RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7735
(120 letters)
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S;
HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1
PDB: 1mvn_A* 1e20_A*
Length = 209
Score = 137 bits (348), Expect = 2e-42
Identities = 42/74 (56%), Positives = 51/74 (68%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
GLCDNLLTCI+RAWD++KP+ PAMNT MWN+P T+ H+ +L G IP + K L
Sbjct: 116 GLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLAS 175
Query: 62 GDTGLGAMAEVDTI 75
GD G GAMAE I
Sbjct: 176 GDYGNGAMAEPSLI 189
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN;
2.91A {Homo sapiens} SCOP: c.34.1.1
Length = 206
Score = 135 bits (343), Expect = 1e-41
Identities = 53/74 (71%), Positives = 63/74 (85%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT ++ LK++GY EIPCV+K L+C
Sbjct: 116 GICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVC 175
Query: 62 GDTGLGAMAEVDTI 75
GD GLGAMAEV TI
Sbjct: 176 GDEGLGAMAEVGTI 189
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP:
c.34.1.1
Length = 194
Score = 85.0 bits (211), Expect = 5e-22
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIP---CVSKT 58
G+ NL+ + A +F P MN MWN + +I L+ G+ I ++
Sbjct: 101 GVAMNLVATTVLAHP--HNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMAFE 158
Query: 59 LMCGDTGLG-AMAEVDTI 75
+ G + D
Sbjct: 159 IATGTRKPNRGLITPDKA 176
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center
for structural genomics of infec diseases, csgid,
oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus}
Length = 175
Score = 84.5 bits (210), Expect = 5e-22
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIP---CVSKT 58
G+CDNLL I + + P MN +MW +P+T+++I LK +G P S
Sbjct: 96 GICDNLLLTICHTAF--EKLSIFPNMNLRMWENPVTQNNIRLLKDYGVSIYPANISESYE 153
Query: 59 LMCGDTGLGAMA-EVDTI 75
L +A E +
Sbjct: 154 LASKTFKKNVVAPEPYKV 171
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like
fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus
epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Length = 181
Score = 84.2 bits (209), Expect = 7e-22
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
G+CDNLLT + + + P MN +MW +P + +I+ LK+ +
Sbjct: 93 GICDNLLTTVCLTGY--QKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFE 150
Query: 62 GDTG----LGAMAEVDTIKYGFVPNTIRKSTEPQD 92
+G M ++ + FV N ++ P D
Sbjct: 151 ISSGRYKNNITMPNIENV-LNFVLNNEKR---PLD 181
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Bacillus cereus}
Length = 207
Score = 47.0 bits (112), Expect = 1e-07
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 2 GLCDNLLT-CILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI 52
+ D+ + KP++ + N + + + + L +
Sbjct: 104 AMTDSPVLMAAKATLRNGKPVVLAVSTNDALGLNGVN---LMRLMATKNIYF 152
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG,
structural protein structure initiative, midwest center
for structural genomics; 2.10A {Bacillus halodurans}
Length = 201
Score = 37.0 bits (86), Expect = 5e-04
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 2 GLCDNLLTCILRAW-DFSKPILFCPAMNTKMWNHPITKSHINTLKSWG 48
+ D+ + +A KP++ + N + +I L +
Sbjct: 106 AMTDSPVLMGAKATLRNGKPVVVGISTNDALGL---NGINIMRLMATK 150
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A
{Pseudomonas aeruginosa}
Length = 209
Score = 31.9 bits (72), Expect = 0.028
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV 55
G C+NL+ A K + + I ++ L + G +P
Sbjct: 113 TGACNNLIERA--ADVALKERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAA 165
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX,
montreal-kingston bacterial structu genomics initiative,
BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Length = 197
Score = 31.4 bits (71), Expect = 0.049
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV 55
G D L+ K + +M I ++ L G +P +
Sbjct: 96 AGYADGLVGRAADV--VLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPM 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.67
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 15/52 (28%)
Query: 69 MAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYSLTGFLYFSLRDDL 120
+ EV I Y F+ + I+ TE + P S+ +Y RD L
Sbjct: 83 VEEVLRINYKFLMSPIK--TEQRQP-------------SMMTRMYIEQRDRL 119
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl
hydrolases, cellulose degradation; 1.90A {Clostridium
thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A
Length = 343
Score = 26.1 bits (57), Expect = 3.9
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 32 WNHPITKSHINTLKSWG 48
++ IT+ I T+ G
Sbjct: 25 FDTFITEKDIETIAEAG 41
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel,
hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga
maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A
3azs_A* 3azr_A* 3azt_A*
Length = 317
Score = 25.6 bits (56), Expect = 4.0
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 26 AMNTKMWNHPITKSHINTLKSWGY 49
A N W I + +K G+
Sbjct: 24 APNEGDWGVVIKDEFFDIIKEAGF 47
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase;
1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Length = 320
Score = 25.6 bits (56), Expect = 5.1
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 32 WNHPITKSHINTLKSWGY 49
W I + +K G+
Sbjct: 38 WGVYIEDEYFKIIKERGF 55
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 25.6 bits (56), Expect = 5.1
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 52 IPCVSKTLMCGDTGLGA------MAEVDTIKYGFVPNTIRKSTEPQDP 93
+ V + + G GA + + G +P + + D
Sbjct: 1373 VIGVFQKFLTGHP-KGAAGAWMMNGALQILNSGIIPGNR--NADNVDK 1417
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 25.7 bits (55), Expect = 5.5
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 50 EEIPCVSKTLMCGDTGLGAMAEV-DTIKYGFVPNTIRKSTEPQDPN 94
+E P SK + GD G A V + T++K + +PN
Sbjct: 899 KEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPN 944
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 24.9 bits (55), Expect = 8.3
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 99 NNAGITEYSLTGFLYFSLRD 118
NNAGI FL +
Sbjct: 113 NNAGIASIVRDDFLDLKPEN 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.450
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,834,238
Number of extensions: 91580
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 23
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)