RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7738
(307 letters)
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily.
Length = 190
Score = 49.6 bits (119), Expect = 3e-07
Identities = 45/183 (24%), Positives = 67/183 (36%), Gaps = 25/183 (13%)
Query: 58 LFSHEECLALERNIDEVSSLAEQGQY-----KPCTVDRAPLRNKYFFGEGYTYGSQLVRK 112
S EE AL + E+ + A Q KP +V + +G Y
Sbjct: 8 FLSAEEQAAL---LRELLAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTDGPGYRYS---- 60
Query: 113 GLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPP 172
P PA + L +L P N+ ++N Y+PG + H D
Sbjct: 61 ----GTPVTGEPWPPFPAVLLQLA-ERLAAAAGPPGFEPNACLVNFYRPGARMGLHQDKD 115
Query: 173 HI-FDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHC 231
+ F PI+S+SL D AL F F +P + LP++ G V L+ + H
Sbjct: 116 ELDFGAPIVSVSL-GDPAL-----FRFGGKTRDDPTIALPLESGDV-LVMGGPSRLAYHG 168
Query: 232 VRP 234
V
Sbjct: 169 VPR 171
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication,
recombination, and repair].
Length = 194
Score = 40.9 bits (96), Expect = 2e-04
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 147 PPNYINSAVINDYQPGGCIVSHIDPPHIFDR-PIISLSLFSDSALCFGCKFNFKPIRVSE 205
P + ++N Y+PG I H D DR P+ SLSL + C F + R
Sbjct: 101 PFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAP------CIFRLRGRRRRG 154
Query: 206 PVLYLPVQRGCVTLLRDFAANGIT----HCVRPQDTQHRRAVILL 246
P L L ++ G V ++ G + H + P+ ++ I L
Sbjct: 155 PGLRLRLEHGDVVVMG-----GPSRLAWHHIIPKTSRLTGQRINL 194
>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 388
Score = 34.9 bits (80), Expect = 0.039
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 33 YDIGQSKHHARELRQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKP 85
YDIGQ + + + ++KILQ + + EE ++E + EV SL + +K
Sbjct: 57 YDIGQQQINVEDEKRKILQSIKK------EENSSIEDVLKEVKSLKNELAHKK 103
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 34.0 bits (79), Expect = 0.095
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 32 PYDIGQSKHHAREL-RQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKP 85
DI S HAR L +Q IL S EE + +DE+ E G+++
Sbjct: 34 EEDIAGSIAHARMLAKQGIL---------SEEEAEKILAGLDEILEEIEAGKFEF 79
>gnl|CDD|225785 COG3246, COG3246, Uncharacterized conserved protein [Function
unknown].
Length = 298
Score = 29.7 bits (67), Expect = 1.6
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 224 AANGITHC-VRPQDTQHRRAVILLRRVLP 251
A I H VRP+D + R VL
Sbjct: 41 AGAAILHLHVRPEDGRPTLDPEAYREVLE 69
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 29.7 bits (67), Expect = 2.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 66 ALERNIDEVSSLAEQGQYKP 85
A R +DEV L EQ YKP
Sbjct: 101 ASNRGVDEVQQLLEQAVYKP 120
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This
family contains members of the 2-oxoglutarate (2OG) and
Fe(II)-dependent oxygenase superfamily.
Length = 93
Score = 27.8 bits (62), Expect = 2.3
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 154 AVINDYQPGGCIVSHIDPPHIFDRPIISLSLF--SDSALCFGCKFNFKPIRVSEPVLYLP 211
A ++ Y+PGG + H D + ++L L+ D G + P V +
Sbjct: 1 AGLSRYRPGGFLGPHTD--NSKGERRVTLLLYLNDDWWPEEGGELELYPSDDGGVVRVIA 58
Query: 212 VQRGCVTLLRDFAANGITHCVRPQDTQHRRAVI 244
+ G + L F + H V P RR +
Sbjct: 59 PKPGRLVL---FRSGNSLHGVTPVGAGRRRLSL 88
>gnl|CDD|236931 PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA
hydratase; Provisional.
Length = 675
Score = 29.1 bits (66), Expect = 3.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 99 FGEGYTYGSQLVRKGLGNERLYPEGEVDPI 128
G +TY S R+ L N+ + EGEV+P+
Sbjct: 105 IGTLFTYAS-KGRRELPNDTVLVEGEVEPL 133
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 28.3 bits (64), Expect = 4.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 99 FGEGYTYGSQLVRKG 113
FG G T+G+ LVR G
Sbjct: 309 FGGGLTWGAALVRWG 323
>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 28.5 bits (65), Expect = 5.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 99 FGEGYTYGSQLVR 111
FG G T+G+ LVR
Sbjct: 305 FGGGLTWGAALVR 317
>gnl|CDD|192151 pfam08781, DP, Transcription factor DP. DP forms a heterodimer
with E2F and regulates genes involved in cell cycle
progression. The transcriptional activity of E2F is
inhibited by the retinoblastoma protein which binds to
the E2F-DP heterodimer and negatively regulates the
G1-S transition.
Length = 141
Score = 27.3 bits (61), Expect = 7.0
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 2 AAYLSELYKCQVVEQNLKLKNR--YSRNQRSS-----PYDIGQSKHHAR 43
A L EL QV +NL +N+ S S P+ + + A
Sbjct: 21 QAQLQELILQQVALKNLVQRNQELESSGNVPSSGIQLPFILVNTSKKAV 69
>gnl|CDD|240558 cd13115, POLO_box_Plk4_2, Second (cryptic) polo-box domain (PBD) of
polo-like kinase 4 (Plk4/Sak). The polo-like Ser/Thr
kinases (Plk1, Plk2/Snk, Plk3/Prk/Fnk, Plk4/Sak, and the
inactive kinase Plk5) play various roles in cytokinesis
and mitosis. At their C-terminus, they contain a
tandemly repeated polo-box domain (in the case of Plk4,
a tandem repeat of cryptic PBDs is found in the middle
of the protein followed by a C-terminal single repeat),
which appears to be involved in autoinhibition and in
mediating the subcellular localization. The latter may
be controlled via interactions between the polo-box
domain and phospho-peptide motifs. The phosphopeptide
binding site is formed at the interface between the two
tandemly repeated PBDs. The PBDs of Plk4/Sak appear
unique in participating in homodimer interactions,
though it is not clear whether and how they interact
with phosphopeptides.
Length = 108
Score = 26.5 bits (59), Expect = 8.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 47 QKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDRAP 92
+K+L N+ + CL LE + + S + P + R P
Sbjct: 67 RKLLDHFNE----CRQHCLRLESALSSLESSSGSNSCFPVIIGRRP 108
>gnl|CDD|130300 TIGR01233, lacG, 6-phospho-beta-galactosidase. This enzyme is part
of the tagatose-6-phosphate pathway of
galactose-6-phosphate degradation [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 467
Score = 27.8 bits (61), Expect = 9.0
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 77 LAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPE--GEVDP 127
L + Y + YG +R + R++P GEV+
Sbjct: 37 LEDNYWYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNE 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,575,306
Number of extensions: 1482563
Number of successful extensions: 1066
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1063
Number of HSP's successfully gapped: 19
Length of query: 307
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 210
Effective length of database: 6,635,264
Effective search space: 1393405440
Effective search space used: 1393405440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)