RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7738
         (307 letters)



>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB
           {Escherichia coli [TaxId: 562]}
          Length = 200

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 26/180 (14%)

Query: 88  VDRAPLRNKYFFGEGYTYGSQLVRKGLG---NERLYPEGEVDP--------IPAWIQSLV 136
             ++P R     G      +      LG   + + Y    +DP        +P    +L 
Sbjct: 27  ASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 86

Query: 137 ITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDP-PHIFDRPIISLSLFSDSALCFGCK 195
                  G  P    ++ +IN Y PG  +  H D        PI+S+SL           
Sbjct: 87  QRAATAAGY-PDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGL------PAI 139

Query: 196 FNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRP------QDTQHRRAVILLRRV 249
           F F  ++ ++P+  L ++ G V +     +    H ++P        T   R  +  R+ 
Sbjct: 140 FQFGGLKRNDPLKRLLLEHGDVVVWGGE-SRLFYHGIQPLKAGFHPLTIDCRYNLTFRQA 198


>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 210

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 5/137 (3%)

Query: 120 YPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHID--PPHIFDR 177
           Y    ++P P W   L   K          + +            +  H D  P      
Sbjct: 74  YSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCP 133

Query: 178 PIISLSLFSDSALCFGCKFNFKP--IRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQ 235
            I SLS  +        K   +          + +P+  G + ++         H V  +
Sbjct: 134 IIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKE 193

Query: 236 -DTQHRRAVILLRRVLP 251
             ++  R  +  R V P
Sbjct: 194 YHSREPRVNLTFRTVYP 210


>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 459

 Score = 28.7 bits (63), Expect = 0.88
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 32 PYDIGQSKHHAREL-RQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKP 85
            D+  SK ++R L +  +L         +  E   +   +D+V+    QG +K 
Sbjct: 31 EVDVQGSKAYSRGLEKAGLL---------TKAEMDQILHGLDKVAEEWAQGTFKL 76


>d1prtb1 b.40.2.1 (B:90-199) Pertussis toxin S2/S3 subunits,
           C-terminal domain {Bordetella pertussis [TaxId: 520]}
          Length = 110

 Score = 26.5 bits (58), Expect = 2.1
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 207 VLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVL 250
           +L     R C   +R      I  C  P D ++      LR++L
Sbjct: 22  LLSSTNSRLCAVFVRS-GQPVIGACTSPYDGKYWSMYSRLRKML 64


>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
          {Escherichia coli [TaxId: 562]}
          Length = 455

 Score = 27.5 bits (60), Expect = 2.4
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 10/59 (16%)

Query: 32 PYDIGQSKHHAREL-RQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVD 89
            DI  S   ++ L    +L         + EE   LE  ++ +         +    D
Sbjct: 29 EQDIVGSVAWSKALVTVGVL---------TAEEQAQLEEALNVLLEDVRARPQQILESD 78


>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 148

 Score = 25.8 bits (56), Expect = 4.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 99  FGEGYTYGSQLVR 111
           +G G +Y +Q+VR
Sbjct: 135 YGAGLSYAAQVVR 147


>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 119

 Score = 25.5 bits (56), Expect = 5.2
 Identities = 9/69 (13%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 12 QVVEQNLKLKNRYSRNQRSSPYDIGQSKHHARELRQKILQGVNQMSLFSHEECLALERNI 71
           +++  +     + R+  + P D G+     + +RQ + +      L + +E   +    
Sbjct: 19 ALIDSKMNQAKGWLRDPNAPPGDAGE-----QAIRQILDEAGKAGELCAGKERREILGTC 73

Query: 72 DEVSSLAEQ 80
            +  + +Q
Sbjct: 74 KTLGQMTDQ 82


>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
           {Escherichia coli [TaxId: 562]}
          Length = 143

 Score = 25.6 bits (55), Expect = 5.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 99  FGEGYTYGSQLVR 111
           FG G+T+GS LVR
Sbjct: 130 FGGGFTWGSALVR 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,131,688
Number of extensions: 52670
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 10
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)