BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7739
(142 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|405970011|gb|EKC34950.1| Myosin-10 [Crassostrea gigas]
Length = 6274
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 28 YQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVT 87
Y +Q+ T R+ + + K + L ++K + K +Q+M EEL+K + +Q +
Sbjct: 5628 YAKQLEKDTTREKEQQDRKLEQLNKRKEDMVKEKKQKMNEELEKIR---------QQGAS 5678
Query: 88 QGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELE 138
+ E R+ +Q E+ + NKM + M+ +L+ R + ++ E+L+N++ E
Sbjct: 5679 EDEQKRLIEQHERDLQNILNKMDADKMRMQSNLQERLKKKKDERLKNKQEE 5729
Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 28/138 (20%)
Query: 25 DRYYQEQMYSATQRQM-----LEAES---------------KEQALQRQKVEYRKALEQQ 64
D Q+++ S RQM +E E +EQALQ+++ R ++++
Sbjct: 5231 DEEEQQRLISEQNRQMQQGGQVEEEETDLAHVPKVQYSQSIEEQALQKEQERIRDEMKKR 5290
Query: 65 MQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKM---MKLRQDMEESLK 121
++E +K E + +E+RV ++D + EK EK+N+ + R+D+ E +
Sbjct: 5291 HKQEREKVAERLDAEEDKEERVLTKDLD---SEREKLLREKRNRQATELSSRKDLTEE-Q 5346
Query: 122 SREQMRQHEKLQNQELEK 139
R+ M HE+ + Q+LE+
Sbjct: 5347 IRDLMASHEQ-ELQDLEE 5363
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 11 KTSKTCSRNMFTIIDRYYQEQMYSATQRQM----LEAESKEQALQRQKVEYRKALEQQMQ 66
+ SK +F I EQ +A QR + + E+ +Q L Q+ + LE ++
Sbjct: 5157 QESKKKRNEIFKKIAEQCPEQQQTAMQRLLDNYHHDTETLDQELAVQRSRHLADLEAKLA 5216
Query: 67 EELDKK-KELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQN----KMMKLRQDMEESLK 121
+K E + +Q +EEQ+ E +R +Q + EE+ + ++ Q +EE
Sbjct: 5217 ARRARKLAEARRKQDEEEQQRLISEQNRQMQQGGQVEEEETDLAHVPKVQYSQSIEEQAL 5276
Query: 122 SREQMR---QHEKLQNQELEK 139
+EQ R + +K QE EK
Sbjct: 5277 QKEQERIRDEMKKRHKQEREK 5297
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 28 YQEQMYSATQRQMLEAESKEQAL--QRQKVEYRKALEQQMQEELDKKKELKYRQYQE-EQ 84
YQ Q +Q LE E+ L + Q +E R AL + K +LK + Y+E +
Sbjct: 5508 YQHQRTQLLNKQQLEMSDLERRLSEEEQDIE-RGALTDWEVQYARAKLDLKEKHYKEFAE 5566
Query: 85 RVTQGEIDRMTKQDEKYREEKQNKM-----MKLRQDMEESLKSREQMRQHEK 131
+ + D QD K+ E+ K+ K + +EE+ K +E+ ++EK
Sbjct: 5567 ALKEFSPDHEGIQDAKHSVEELEKLKHELEQKRKSQLEEAKKQQEEFEKNEK 5618
>gi|159491050|ref|XP_001703486.1| centriole proteome protein [Chlamydomonas reinhardtii]
gi|158280410|gb|EDP06168.1| centriole proteome protein [Chlamydomonas reinhardtii]
Length = 3124
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 42 EAESKEQALQRQKVEYRKALEQQMQEELDKKK---ELKYRQYQEEQRVTQGEIDRMTKQD 98
E + ++ LQRQK E +A QQ+++E ++K E K +Q ++EQ+ + E R +
Sbjct: 1816 EQQRQKDELQRQKQE-AEAKMQQLEDEQQRQKQEAEAKMQQLEDEQQRQKDEQQRQKDEL 1874
Query: 99 EKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELE 138
++ ++E + KM +L E+ + EQ RQ ++LQ Q+ E
Sbjct: 1875 QRQKQEAEAKMQQLED--EQQRQKDEQQRQKDELQRQKQE 1912
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 30 EQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKK---ELKYRQYQEEQRV 86
+Q+ QRQ EAE+K Q L+ ++ + +K +Q+ ++EL ++K E K +Q ++EQ+
Sbjct: 1836 QQLEDEQQRQKQEAEAKMQQLEDEQ-QRQKDEQQRQKDELQRQKQEAEAKMQQLEDEQQR 1894
Query: 87 TQGEIDRMTKQDEKYREEKQNKMMKLRQD 115
+ E R + ++ ++E + KM K R +
Sbjct: 1895 QKDEQQRQKDELQRQKQEAEAKMQKFRAE 1923
Score = 39.7 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 26 RYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQR 85
R +Q++S + E + ++ QRQK E ++Q E+ +K E + RQ E QR
Sbjct: 1768 RRLVDQLHSDVVQLQDEQQRQKDEQQRQKQEVWAKMQQLQDEQQRQKDE-QQRQKDELQR 1826
Query: 86 VTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSR-EQMRQHEKLQNQELE 138
Q +M + +++ + +KQ K++Q +E + + EQ RQ ++LQ Q+ E
Sbjct: 1827 QKQEAEAKMQQLEDEQQRQKQEAEAKMQQLEDEQQRQKDEQQRQKDELQRQKQE 1880
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 30 EQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQG 89
+Q+ QRQ E + ++ LQRQK E +A QQ+++E ++K+ + RQ E QR Q
Sbjct: 1854 QQLEDEQQRQKDEQQRQKDELQRQKQE-AEAKMQQLEDEQQRQKDEQQRQKDELQRQKQE 1912
Query: 90 EIDRMTKQDEKYREEK 105
+M +K+R E+
Sbjct: 1913 AEAKM----QKFRAER 1924
>gi|340522683|gb|EGR52916.1| predicted protein [Trichoderma reesei QM6a]
Length = 1235
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 46 KEQALQRQKVEYR---KALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYR 102
K+ A Q+QK E + K +++ +E+ KKE + ++ EQ+ Q E++R ++ K R
Sbjct: 587 KKIAEQKQKAEEKRRQKEAQKKAEEDARLKKEAERQRRIHEQKEKQAELERKARE-AKER 645
Query: 103 EEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
E+K ++++ K RE + EK + + EK
Sbjct: 646 EKKLKDEQRIKEREAREQKEREAQERKEKQERDKREK 682
>gi|358399860|gb|EHK49197.1| hypothetical protein TRIATDRAFT_171742, partial [Trichoderma
atroviride IMI 206040]
Length = 1239
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 25 DRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQ 84
++ +E +A +EAE K+ A Q+QK E E++ Q+E KK E + R +E
Sbjct: 586 EKARKEAEKAAEDTARIEAERKKIAEQKQKAE-----EKRRQKEAQKKAEEEARLKKEAD 640
Query: 85 RVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
R+ + ++ KQ E+ R+ ++ K + + E+ LK +E Q E+ + EK
Sbjct: 641 RLRRLH-EQKEKQAEQERKAREAKEREKKLKEEQRLKEQEAREQKEREAKERKEK 694
>gi|225620495|ref|YP_002721752.1| MATE efflux family protein [Brachyspira hyodysenteriae WA1]
gi|225215314|gb|ACN84048.1| MATE efflux family protein [Brachyspira hyodysenteriae WA1]
Length = 615
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 62 EQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLK 121
E +MQ L++ KEL+ ++ QE + + +E ++EK+ K ++++Q+++ +
Sbjct: 536 EWRMQ--LEEMKELREKKNQERK-----------EYNENRKKEKEAKKLQMKQEVQSRRE 582
Query: 122 SREQMRQHEKLQNQE 136
+R ++R+ +K+++Q+
Sbjct: 583 ARHRLREEKKIESQK 597
>gi|374339075|ref|YP_005095811.1| DNA repair ATPase [Marinitoga piezophila KA3]
gi|372100609|gb|AEX84513.1| ATPase involved in DNA repair [Marinitoga piezophila KA3]
Length = 932
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 23/130 (17%)
Query: 23 IIDRYYQEQMYSATQ-------RQMLEAESKEQALQRQKVEYR-KALE--------QQMQ 66
I D EQ+YS Q Q+L ESK + L++Q EY K LE + ++
Sbjct: 159 IFDTEVYEQLYSILQLSEKKYNEQILSFESKVEILEKQIEEYAGKDLELEKVKKEIENLE 218
Query: 67 EELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEK------QNKMMKLRQDMEESL 120
EL K KE K +Y E+++ + +I+R+ + + K K Q K++KL +D+++SL
Sbjct: 219 NELSKLKE-KAARYDEKKKSLEEKINRLKEYEHKLDSLKLKEEVLQEKILKLEKDIDQSL 277
Query: 121 KSREQMRQHE 130
K++E + + E
Sbjct: 278 KAKEIVMKSE 287
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.123 0.322
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,813,011,079
Number of Sequences: 23463169
Number of extensions: 67661369
Number of successful extensions: 1511485
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10307
Number of HSP's successfully gapped in prelim test: 29707
Number of HSP's that attempted gapping in prelim test: 1018757
Number of HSP's gapped (non-prelim): 315618
length of query: 142
length of database: 8,064,228,071
effective HSP length: 106
effective length of query: 36
effective length of database: 9,872,099,453
effective search space: 355395580308
effective search space used: 355395580308
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 71 (32.0 bits)