BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7739
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JTZ|A Chain A, Structure Of The Arm-type Binding Domain Of Hpi Integrase
 pdb|3RMP|A Chain A, Structural Basis For The Recognition Of Attp Substrates By
           P4-Like Integrases
 pdb|3RMP|C Chain C, Structural Basis For The Recognition Of Attp Substrates By
           P4-Like Integrases
          Length = 88

 Score = 26.9 bits (58), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 75  LKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDME 117
           LKYR   +E R+  G    ++  D + + E   KM+ L  ++E
Sbjct: 40  LKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNINLE 82


>pdb|2ZOV|A Chain A, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form I)
          Length = 210

 Score = 26.9 bits (58), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 27/40 (67%)

Query: 88  QGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMR 127
           QGE+++    DE  +  +Q+++ KLR D+++ ++S  ++R
Sbjct: 8   QGEVEKQPNIDELKKRXEQSRLNKLRGDLDQLIESDPKLR 47


>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
          Length = 599

 Score = 26.2 bits (56), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 22  TIIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQ 81
           + ID Y Q+  + ATQ  +  A + E    R   E++      + E  +++++  Y+ + 
Sbjct: 380 SFIDGYRQKDYFIATQGPL--AHTVED-FWRMIWEWKSHTIVMLTEVQEREQDKCYQYWP 436

Query: 82  EEQRVTQGEIDRMTKQD 98
            E  VT GEI    K D
Sbjct: 437 TEGSVTHGEITIEIKND 453


>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
           MUTANT
          Length = 554

 Score = 25.8 bits (55), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 73  KELKYRQYQEEQRVTQGEIDRMTKQDEKYR--EEKQNKMMKLRQDME 117
           KE K     ++ R+++ +I+RM ++ EKY+  +EKQ   +  +  +E
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 543


>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
          Length = 554

 Score = 25.8 bits (55), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 73  KELKYRQYQEEQRVTQGEIDRMTKQDEKYR--EEKQNKMMKLRQDME 117
           KE K     ++ R+++ +I+RM ++ EKY+  +EKQ   +  +  +E
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 543


>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
           From Rattus Norvegicus In Post-Atp Hydrolysis State
 pdb|2V7Z|B Chain B, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
           From Rattus Norvegicus In Post-Atp Hydrolysis State
          Length = 543

 Score = 25.8 bits (55), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 73  KELKYRQYQEEQRVTQGEIDRMTKQDEKYR--EEKQNKMMKLRQDME 117
           KE K     ++ R+++ +I+RM ++ EKY+  +EKQ   +  +  +E
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 543


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.123    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,409,941
Number of Sequences: 62578
Number of extensions: 116132
Number of successful extensions: 642
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 136
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)