Query psy7739
Match_columns 142
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 17:33:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13868 Trichoplein: Tumour s 94.6 1.6 3.5E-05 33.8 15.1 112 25-137 40-151 (350)
2 PF10669 Phage_Gp23: Protein g 69.2 29 0.00062 26.7 6.9 62 58-121 41-102 (121)
3 PF06936 Selenoprotein_S: Sele 67.8 54 0.0012 25.8 8.3 19 56-74 83-101 (190)
4 KOG1029|consensus 63.6 1.6E+02 0.0036 29.3 13.5 95 32-138 503-614 (1118)
5 PF05529 Bap31: B-cell recepto 58.3 70 0.0015 23.3 9.1 26 76-101 162-187 (192)
6 PF09731 Mitofilin: Mitochondr 55.0 1.3E+02 0.0028 25.4 12.3 26 96-121 307-332 (582)
7 PF06336 Corona_5a: Coronaviru 43.5 15 0.00033 25.8 1.5 25 4-28 29-54 (65)
8 KOG4657|consensus 37.3 2.6E+02 0.0056 23.8 13.1 85 18-106 25-117 (246)
9 PF04799 Fzo_mitofusin: fzo-li 36.8 2.1E+02 0.0046 22.6 7.2 73 41-114 67-151 (171)
10 COG1293 Predicted RNA-binding 25.8 4.7E+02 0.01 23.1 8.1 56 23-80 266-322 (564)
11 KOG1580|consensus 25.7 33 0.00072 30.0 1.0 25 2-26 259-285 (337)
12 PF12923 RRP7: Ribosomal RNA-p 25.2 1.4E+02 0.003 21.4 4.0 30 101-130 97-126 (131)
13 KOG0100|consensus 24.5 91 0.002 29.3 3.6 23 83-105 537-559 (663)
14 PF12230 PRP21_like_P: Pre-mRN 23.4 2.4E+02 0.0052 21.3 5.1 32 12-43 8-39 (229)
15 PF07129 DUF1381: Protein of u 22.9 26 0.00056 23.1 -0.2 13 40-52 30-42 (44)
16 PF05546 She9_MDM33: She9 / Md 22.6 1E+02 0.0022 25.2 3.1 21 20-40 130-150 (207)
17 PF13942 Lipoprotein_20: YfhG 22.1 1.2E+02 0.0026 24.6 3.4 47 80-126 121-169 (179)
18 PF15122 TMEM206: TMEM206 prot 21.8 34 0.00073 29.7 0.3 16 12-27 4-19 (298)
19 PF06034 DUF919: Nucleopolyhed 21.6 2.7E+02 0.0058 18.8 6.0 50 61-117 6-55 (62)
20 PF07058 Myosin_HC-like: Myosi 20.6 2.3E+02 0.0049 25.2 5.1 48 46-95 78-128 (351)
21 COG4224 Uncharacterized protei 20.4 2.8E+02 0.0061 20.0 4.7 50 21-73 3-52 (77)
No 1
>PF13868 Trichoplein: Tumour suppressor, Mitostatin
Probab=94.64 E-value=1.6 Score=33.79 Aligned_cols=112 Identities=27% Similarity=0.438 Sum_probs=80.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHhhhhhhhhhhhhhhhHHhHHH
Q psy7739 25 DRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREE 104 (142)
Q Consensus 25 dryyqeqmysatqrqmleaeskeqalqrqkveyrkaleqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtkqdekyree 104 (142)
++.|...|-..-..-.-+.+.++.........++.+|..||.+ ....+...+.....|...-...+-+....+..-...
T Consensus 40 e~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~L~~Qi~e-~~~~r~~e~e~~~~E~~~~~~~~~~~~~Ee~~~~~~ 118 (350)
T PF13868_consen 40 ERRYDEQMEEEREKAEEEEEEKEEERKEKRQEQRQALQEQIEE-RERRRQEEKEEKEREAEQLKEQIKQIQEEEEAEEEE 118 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444444445555556778899999999944 455555666677777777677777777778888888
Q ss_pred HHHHHHHhhHHHHHhHHhHHHHHHHHHhhhhhh
Q psy7739 105 KQNKMMKLRQDMEESLKSREQMRQHEKLQNQEL 137 (142)
Q Consensus 105 kqnkmmklrqdmeeslksreqmrqheklqnqel 137 (142)
+..+...+++++..+...+..++..++....+.
T Consensus 119 k~~k~~~~~~e~~~~~~~~~~~k~~e~~~e~ee 151 (350)
T PF13868_consen 119 KREKQKELRQELDEFNEERKERKAREKEREKEE 151 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888877665543
No 2
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=69.15 E-value=29 Score=26.74 Aligned_cols=62 Identities=34% Similarity=0.393 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhHhhhHHHHHHHHhhhhhhhhhhhhhhhHHhHHHHHHHHHHhhHHHHHhHH
Q psy7739 58 RKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLK 121 (142)
Q Consensus 58 rkaleqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtkqdekyreekqnkmmklrqdmeeslk 121 (142)
|+.+.-.|.||-.|+.+-.-..-.|..|-.|.-|-.|.++..- -.+||.||+-.|.--.||.
T Consensus 41 ~r~~r~~MKEER~K~E~~~q~r~rES~~Er~K~~~s~~~~q~L--m~rQN~mm~~qqqsidsls 102 (121)
T PF10669_consen 41 SRQVRIRMKEERSKKEEKRQKRNRESKRERQKFIWSMNKQQSL--MNRQNNMMKQQQQSIDSLS 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHH--HHHHhHHHHHHHHhHHHHH
Confidence 3444445555444433322111222223334445555555443 5789999998887666663
No 3
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=67.81 E-value=54 Score=25.77 Aligned_cols=19 Identities=53% Similarity=0.604 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhHhh
Q psy7739 56 EYRKALEQQMQEELDKKKE 74 (142)
Q Consensus 56 eyrkaleqqmqeeldkkke 74 (142)
|-..|..+.||||+|++-+
T Consensus 83 Ea~eaAR~RmQEE~dakA~ 101 (190)
T PF06936_consen 83 EAMEAARRRMQEELDAKAE 101 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445677889999999865
No 4
>KOG1029|consensus
Probab=63.63 E-value=1.6e+02 Score=29.32 Aligned_cols=95 Identities=27% Similarity=0.342 Sum_probs=62.8
Q ss_pred HhHHHHHHHHHHhhHH---------------HHHHHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHhhhhhhhhhhhhh
Q psy7739 32 MYSATQRQMLEAESKE---------------QALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTK 96 (142)
Q Consensus 32 mysatqrqmleaeske---------------qalqrqkveyrkaleqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtk 96 (142)
.+-+-.+|.|++.+|. .|+-+.|-..|++|+.|+ ++|.|.++-|| .+||-...
T Consensus 503 ~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdql-delskE~esk~-----------~eidi~n~ 570 (1118)
T KOG1029|consen 503 QKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQL-DELSKETESKL-----------NEIDIFNN 570 (1118)
T ss_pred HhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----------HhhhhHHH
Confidence 4555667777765542 244556666777777665 45666666665 46888999
Q ss_pred hhHHhHHHHHHHHHHhhHHHH-HhHHhHHHHHH-HHHhhhhhhh
Q psy7739 97 QDEKYREEKQNKMMKLRQDME-ESLKSREQMRQ-HEKLQNQELE 138 (142)
Q Consensus 97 qdekyreekqnkmmklrqdme-eslksreqmrq-heklqnqele 138 (142)
|-++|++.--.+..+.++-++ +-.+-+++-+. -|...+.+.+
T Consensus 571 qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~e 614 (1118)
T KOG1029|consen 571 QLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEAE 614 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999998888888888887 55555554332 2344454444
No 5
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.34 E-value=70 Score=23.34 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhHHh
Q psy7739 76 KYRQYQEEQRVTQGEIDRMTKQDEKY 101 (142)
Q Consensus 76 kyrqyqeeqrvtqgeidrmtkqdeky 101 (142)
.+....+|-...+.+++.|.+|-+..
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444666666666665543
No 6
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=54.96 E-value=1.3e+02 Score=25.35 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=14.2
Q ss_pred hhhHHhHHHHHHHHHHhhHHHHHhHH
Q psy7739 96 KQDEKYREEKQNKMMKLRQDMEESLK 121 (142)
Q Consensus 96 kqdekyreekqnkmmklrqdmeeslk 121 (142)
++.+.++.+-+.....|++.+++.|+
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556655555443
No 7
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=43.45 E-value=15 Score=25.80 Aligned_cols=25 Identities=36% Similarity=0.829 Sum_probs=18.5
Q ss_pred hhhhhCCCCcccccchhhHH-HHHHH
Q psy7739 4 TLLEFGPKTSKTCSRNMFTI-IDRYY 28 (142)
Q Consensus 4 tllefgpktsktcsrnmfti-idryy 28 (142)
-+|+.||+..-||+|..+-+ +|-.|
T Consensus 29 lil~hgp~r~ltc~rrvll~qldlvy 54 (65)
T PF06336_consen 29 LILDHGPKRTLTCARRVLLVQLDLVY 54 (65)
T ss_pred HHHhcCCcceehhhHHHHHHHHHHHH
Confidence 35899999999999987643 34433
No 8
>KOG4657|consensus
Probab=37.31 E-value=2.6e+02 Score=23.76 Aligned_cols=85 Identities=24% Similarity=0.287 Sum_probs=39.5
Q ss_pred chhhHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------HHHHHHhhhHhhhHHHHHHHHh--hhhhh
Q psy7739 18 RNMFTIIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALE------QQMQEELDKKKELKYRQYQEEQ--RVTQG 89 (142)
Q Consensus 18 rnmftiidryyqeqmysatqrqmleaeskeqalqrqkveyrkale------qqmqeeldkkkelkyrqyqeeq--rvtqg 89 (142)
-|.+.+||++.|+- |...-+.. -.--++|.+-++|-.++++ .+|++-..-+.+-+-+|---+| .-+|.
T Consensus 25 ~n~~s~~D~f~q~~-r~~~~nS~---~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~ 100 (246)
T KOG4657|consen 25 HNQRSKIDSFIQSP-RRRSMNSL---VEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS 100 (246)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999998876 22111111 1111244444444433322 2233222111112223333333 34677
Q ss_pred hhhhhhhhhHHhHHHHH
Q psy7739 90 EIDRMTKQDEKYREEKQ 106 (142)
Q Consensus 90 eidrmtkqdekyreekq 106 (142)
++++|++.-....+|+-
T Consensus 101 elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 101 ELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888876665555554
No 9
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=36.84 E-value=2.1e+02 Score=22.60 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=22.3
Q ss_pred HHHhhHHHHHHHHHHHHHH------------HHHHHHHHHhhhHhhhHHHHHHHHhhhhhhhhhhhhhhhHHhHHHHHHH
Q psy7739 41 LEAESKEQALQRQKVEYRK------------ALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNK 108 (142)
Q Consensus 41 leaeskeqalqrqkveyrk------------aleqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtkqdekyreekqnk 108 (142)
--...||+++.+|-|+|-- ...+|+|.||+.--.---.+-.+-.+--..||+++.+.-+.. |.-+++
T Consensus 67 WT~~AKER~fK~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~l-e~~~~~ 145 (171)
T PF04799_consen 67 WTNKAKERAFKRQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRL-EEIQSK 145 (171)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3456789999999888842 346788988876543333344444444567888887766554 344555
Q ss_pred HHHhhH
Q psy7739 109 MMKLRQ 114 (142)
Q Consensus 109 mmklrq 114 (142)
.-.||.
T Consensus 146 ~k~Lrn 151 (171)
T PF04799_consen 146 SKTLRN 151 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 10
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=25.82 E-value=4.7e+02 Score=23.14 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-HHHHH
Q psy7739 23 IIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKEL-KYRQY 80 (142)
Q Consensus 23 iidryyqeqmysatqrqmleaeskeqalqrqkveyrkaleqqmqeeldkkkel-kyrqy 80 (142)
.+|++|.+....-.--+.-. ..++-+.+..-.+++.++.|.++..+-.+.. .||++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~ 322 (564)
T COG1293 266 LFNEALDEKFERDKIKQLAS--ELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322 (564)
T ss_pred HHHHHHHHHhhhhhHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777654433322211 2455566666667777777777655544444 55554
No 11
>KOG1580|consensus
Probab=25.68 E-value=33 Score=30.01 Aligned_cols=25 Identities=48% Similarity=0.733 Sum_probs=19.3
Q ss_pred hhhhhhhCCCCcc--cccchhhHHHHH
Q psy7739 2 LKTLLEFGPKTSK--TCSRNMFTIIDR 26 (142)
Q Consensus 2 lktllefgpktsk--tcsrnmftiidr 26 (142)
.+|..+|||-|.. |-.|..|||+-.
T Consensus 259 F~tv~~FgPLtCSivTTTRKfFTil~S 285 (337)
T KOG1580|consen 259 FKTVEEFGPLTCSIVTTTRKFFTILIS 285 (337)
T ss_pred HHHHHHhCCeeEEEEeehHHHHHHHHH
Confidence 4788999998743 445999999854
No 12
>PF12923 RRP7: Ribosomal RNA-processing protein 7 (RRP7); InterPro: IPR024326 Ribosomal RNA-processing protein 7 (RRP7) is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly []. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [, ]. This entry includes RRP7 and homologous sequences from other organisms.
Probab=25.23 E-value=1.4e+02 Score=21.41 Aligned_cols=30 Identities=40% Similarity=0.593 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhhHHHHHhHHhHHHHHHHH
Q psy7739 101 YREEKQNKMMKLRQDMEESLKSREQMRQHE 130 (142)
Q Consensus 101 yreekqnkmmklrqdmeeslksreqmrqhe 130 (142)
-||.|.|.+..||.-.|+--+.-++|+.--
T Consensus 97 ~RE~kk~~l~eLrkkFeeDK~ki~~mk~~R 126 (131)
T PF12923_consen 97 IREKKKNELAELRKKFEEDKKKIEQMKAAR 126 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 368899999999999999999999988643
No 13
>KOG0100|consensus
Probab=24.54 E-value=91 Score=29.32 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.5
Q ss_pred HhhhhhhhhhhhhhhhHHhHHHH
Q psy7739 83 EQRVTQGEIDRMTKQDEKYREEK 105 (142)
Q Consensus 83 eqrvtqgeidrmtkqdekyreek 105 (142)
.-|+|+.+|+||.+..|++.+|-
T Consensus 537 ~~rLt~EdIerMv~eAekFAeeD 559 (663)
T KOG0100|consen 537 KGRLTPEDIERMVNEAEKFAEED 559 (663)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhh
Confidence 45899999999999999999874
No 14
>PF12230 PRP21_like_P: Pre-mRNA splicing factor PRP21 like protein; InterPro: IPR022030 This domain family is found in eukaryotes, and is typically between 212 and 238 amino acids in length. The family is found in association with PF01805 from PFAM. There are two completely conserved residues (W and H) that may be functionally important. PRP21 is required for assembly of the prespliceosome and it interacts with U2 snRNP and/or pre-mRNA in the prespliceosome. This family also contains proteins similar to PRP21, such as the mammalian SF3a. SF3a also interacts with U2 snRNP from the prespliceosome, converting it to its active form. ; PDB: 4DGW_B.
Probab=23.41 E-value=2.4e+02 Score=21.27 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=18.5
Q ss_pred CcccccchhhHHHHHHHHHHHhHHHHHHHHHH
Q psy7739 12 TSKTCSRNMFTIIDRYYQEQMYSATQRQMLEA 43 (142)
Q Consensus 12 tsktcsrnmftiidryyqeqmysatqrqmlea 43 (142)
.-+-|+.|-++|++|-|+---|...|+..-..
T Consensus 8 L~~~~~~~k~~iL~r~~~Raew~k~~~~~k~k 39 (229)
T PF12230_consen 8 LKKDSSDNKQEILERCKQRAEWEKYQEEEKKK 39 (229)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999888887766655443
No 15
>PF07129 DUF1381: Protein of unknown function (DUF1381); InterPro: IPR009812 This entry is represented by Bacteriophage 92, Orf59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=22.95 E-value=26 Score=23.08 Aligned_cols=13 Identities=62% Similarity=0.879 Sum_probs=10.4
Q ss_pred HHHHhhHHHHHHH
Q psy7739 40 MLEAESKEQALQR 52 (142)
Q Consensus 40 mleaeskeqalqr 52 (142)
..||||||+|+..
T Consensus 30 vVeAeskeeA~~k 42 (44)
T PF07129_consen 30 VVEAESKEEALKK 42 (44)
T ss_pred EEEecchHHHHhh
Confidence 4689999999753
No 16
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.59 E-value=1e+02 Score=25.17 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHH
Q psy7739 20 MFTIIDRYYQEQMYSATQRQM 40 (142)
Q Consensus 20 mftiidryyqeqmysatqrqm 40 (142)
|-.|..||.-||++|..-|.+
T Consensus 130 ~~~Il~RYHEEQiWSDKIRr~ 150 (207)
T PF05546_consen 130 MRAILTRYHEEQIWSDKIRRA 150 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 456899999999999888765
No 17
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=22.10 E-value=1.2e+02 Score=24.60 Aligned_cols=47 Identities=30% Similarity=0.480 Sum_probs=34.5
Q ss_pred HHHHhhhhhhhhhhhhhhhHHhHHHHHHHHHHhh--HHHHHhHHhHHHH
Q psy7739 80 YQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLR--QDMEESLKSREQM 126 (142)
Q Consensus 80 yqeeqrvtqgeidrmtkqdekyreekqnkmmklr--qdmeeslksreqm 126 (142)
|+.-|--+.++||+|-.|....+.+-..---||- -|+|.-|.||.++
T Consensus 121 y~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSRK~~ 169 (179)
T PF13942_consen 121 YQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSRKQA 169 (179)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccCCC
Confidence 4555566889999999888887776655444543 4899999998764
No 18
>PF15122 TMEM206: TMEM206 protein family
Probab=21.83 E-value=34 Score=29.65 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=12.7
Q ss_pred CcccccchhhHHHHHH
Q psy7739 12 TSKTCSRNMFTIIDRY 27 (142)
Q Consensus 12 tsktcsrnmftiidry 27 (142)
-||||-+|.|++|=-+
T Consensus 4 fsk~clkn~fsvlLi~ 19 (298)
T PF15122_consen 4 FSKTCLKNVFSVLLIF 19 (298)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4899999999987543
No 19
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=21.63 E-value=2.7e+02 Score=18.85 Aligned_cols=50 Identities=30% Similarity=0.409 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhHhhhHHHHHHHHhhhhhhhhhhhhhhhHHhHHHHHHHHHHhhHHHH
Q psy7739 61 LEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDME 117 (142)
Q Consensus 61 leqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtkqdekyreekqnkmmklrqdme 117 (142)
|.+|+.+-..-|+++.-...-.| -|.++||-. +-..+-+.+++++|++.-
T Consensus 6 L~~QLd~I~~~K~~l~ik~~H~E------kl~kitK~p-~El~~i~~kl~~~R~~FL 55 (62)
T PF06034_consen 6 LTQQLDEINQMKRQLTIKSQHWE------KLKKITKNP-KELQEIEKKLQELRQNFL 55 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHhccCCH-HHHHHHHHHHHHHHHHHH
Confidence 45566655555666544333222 367777644 233556778999998764
No 20
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=20.62 E-value=2.3e+02 Score=25.18 Aligned_cols=48 Identities=33% Similarity=0.500 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHH-HHH--HHHHHHhhhHhhhHHHHHHHHhhhhhhhhhhhh
Q psy7739 46 KEQALQRQKVEYRK-ALE--QQMQEELDKKKELKYRQYQEEQRVTQGEIDRMT 95 (142)
Q Consensus 46 keqalqrqkveyrk-ale--qqmqeeldkkkelkyrqyqeeqrvtqgeidrmt 95 (142)
-|..|.|.||---. |.- ..-..+-| |-.--.|+-||.|+-|||+.++.
T Consensus 78 LeRELARaKV~aNRVA~vvANEWKD~nD--kvMPVKqWLEERR~lQgEmQ~Lr 128 (351)
T PF07058_consen 78 LERELARAKVSANRVATVVANEWKDEND--KVMPVKQWLEERRFLQGEMQQLR 128 (351)
T ss_pred HHHHHHHhhhhhhhhhhhhcccccccCC--ccccHHHHHHHHHHHHHHHHHHH
Confidence 34556777765432 221 11111222 34567899999999999998874
No 21
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.45 E-value=2.8e+02 Score=20.01 Aligned_cols=50 Identities=30% Similarity=0.377 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q psy7739 21 FTIIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKK 73 (142)
Q Consensus 21 ftiidryyqeqmysatqrqmleaeskeqalqrqkveyrkaleqqmqeeldkkk 73 (142)
-.+|+| ..|----+--.-+-++|-+||+.-|+ +|-+.+..++...|+.-+
T Consensus 3 ~~~i~r-INeLAkk~K~~gLTeeEk~eQ~~LR~--eYl~~fr~~vk~~l~~ik 52 (77)
T COG4224 3 KKKIAR-INELAKKKKEEGLTEEEKKEQAKLRR--EYLESFRGQVKNQLENIK 52 (77)
T ss_pred HHHHHH-HHHHHHHhcccCCCHHHHHHHHHHHH--HHHHHHHHHHHHhhccee
Confidence 345666 33322223334456788889988775 788888888888876544
Done!