Query psy7739
Match_columns 142
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 17:33:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_A Leucine-rich immune mol 49.9 83 0.0028 24.0 11.0 26 95-120 416-441 (487)
2 2q2f_A Selenoprotein S; anti-p 42.7 87 0.003 22.1 7.0 30 44-75 37-66 (89)
3 3obv_E Protein diaphanous homo 25.6 2.6E+02 0.009 22.5 8.4 47 7-55 352-398 (457)
4 3mq9_A Bone marrow stromal ant 23.1 2.4E+02 0.0083 21.2 13.4 11 45-55 370-380 (471)
5 3lvh_D LCB, clathrin light cha 22.5 2.5E+02 0.0085 22.0 6.5 54 77-136 102-155 (205)
6 1ezj_A Nucleocapsid phosphopro 20.7 1.5E+02 0.0051 21.7 4.6 32 53-84 66-99 (115)
7 3bhp_A UPF0291 protein YNZC; N 18.8 1.5E+02 0.0051 19.2 3.8 32 38-71 20-51 (60)
8 3dob_A Heat shock 70 kDa prote 17.1 57 0.002 22.6 1.6 22 85-106 118-139 (152)
9 3lvg_D LCB, clathrin light cha 16.5 3.9E+02 0.013 20.9 6.5 54 77-136 87-140 (190)
10 3dqg_A Heat shock 70 kDa prote 14.8 74 0.0025 22.0 1.7 22 84-105 116-137 (151)
No 1
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.89 E-value=83 Score=23.95 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=12.8
Q ss_pred hhhhHHhHHHHHHHHHHhhHHHHHhH
Q psy7739 95 TKQDEKYREEKQNKMMKLRQDMEESL 120 (142)
Q Consensus 95 tkqdekyreekqnkmmklrqdmeesl 120 (142)
-++-|.-..+.|+.+.+.++||+..-
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (487)
T 3oja_A 416 VKRYEEMYVEQQSVQNNAIRDWDMYQ 441 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhh
Confidence 33333333444555555666665553
No 2
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=42.65 E-value=87 Score=22.08 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Q psy7739 44 ESKEQALQRQKVEYRKALEQQMQEELDKKKEL 75 (142)
Q Consensus 44 eskeqalqrqkveyrkaleqqmqeeldkkkel 75 (142)
-+.+..+.||. --.|-...|||+||.+.++
T Consensus 37 ~dPd~vv~RQE--Al~aaRlRMQEeldAqAe~ 66 (89)
T 2q2f_A 37 VEPDVVVKRQE--ALAAARLKMQEELNAQVEK 66 (89)
T ss_dssp TSHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 34556666663 2345567899999988764
No 3
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=25.60 E-value=2.6e+02 Score=22.49 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=23.1
Q ss_pred hhCCCCcccccchhhHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHH
Q psy7739 7 EFGPKTSKTCSRNMFTIIDRYYQEQMYSATQRQMLEAESKEQALQRQKV 55 (142)
Q Consensus 7 efgpktsktcsrnmftiidryyqeqmysatqrqmleaeskeqalqrqkv 55 (142)
-||-...++-....|.||..|... |..........+..|+...|.+.
T Consensus 352 yFgedp~~~~~~eFF~~~~~F~~~--fkkA~~eN~~r~e~eek~~r~~~ 398 (457)
T 3obv_E 352 YFVFDPKKLSVEEFFMDLHNFRNM--FLQAVKENQKRRETEEKMRRAKL 398 (457)
T ss_dssp HTTCCTTTSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456433333345788899888653 43333333333333343444443
No 4
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.14 E-value=2.4e+02 Score=21.21 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=4.5
Q ss_pred hHHHHHHHHHH
Q psy7739 45 SKEQALQRQKV 55 (142)
Q Consensus 45 skeqalqrqkv 55 (142)
+.++||..-..
T Consensus 370 t~eeal~~~~~ 380 (471)
T 3mq9_A 370 TVDEALKDAQT 380 (471)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44444443333
No 5
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=22.46 E-value=2.5e+02 Score=22.04 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=34.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHhHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHhhhhh
Q psy7739 77 YRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQE 136 (142)
Q Consensus 77 yrqyqeeqrvtqgeidrmtkqdekyreekqnkmmklrqdmeeslksreqmrqheklqnqe 136 (142)
.|.+.|+|+ .|+.+.|+.-+..++.-.-+-++++++-.+++..-..--|.+|..
T Consensus 102 IRkWREEq~------kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~ 155 (205)
T 3lvh_D 102 IRKWREEQR------KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 155 (205)
T ss_dssp HHHHHHHHT------TTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455666665 345556677677777777777788887777766655555555543
No 6
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=20.71 E-value=1.5e+02 Score=21.73 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhHH--HHHHHHh
Q psy7739 53 QKVEYRKALEQQMQEELDKKKELKY--RQYQEEQ 84 (142)
Q Consensus 53 qkveyrkaleqqmqeeldkkkelky--rqyqeeq 84 (142)
.||+-.+.+-.|+|+|...-+++-- -.||.||
T Consensus 66 ~kv~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ 99 (115)
T 1ezj_A 66 RKVDENKQLLKQIQESVESFRDIYKRFSEYQKEQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4777777888899999988887632 2455555
No 7
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=18.80 E-value=1.5e+02 Score=19.16 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=23.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7739 38 RQMLEAESKEQALQRQKVEYRKALEQQMQEELDK 71 (142)
Q Consensus 38 rqmleaeskeqalqrqkveyrkaleqqmqeeldk 71 (142)
+-+-++|.+||+.-|+ +|-+++..++...|+.
T Consensus 20 ~gLT~eEk~EQ~~LR~--eYl~~fR~~~r~~L~~ 51 (60)
T 3bhp_A 20 GVITEEEKAEQQKLRQ--EYLKGFRSSMKNTLKS 51 (60)
T ss_dssp TCCCHHHHHHHHHHHH--HHHHHHHHHHHHHSSC
T ss_pred cCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 4456778888887765 7888888888777764
No 8
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=17.09 E-value=57 Score=22.56 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=16.7
Q ss_pred hhhhhhhhhhhhhhHHhHHHHH
Q psy7739 85 RVTQGEIDRMTKQDEKYREEKQ 106 (142)
Q Consensus 85 rvtqgeidrmtkqdekyreekq 106 (142)
+++..||++|.+..++|.++-.
T Consensus 118 ~Ls~~ei~~~~~~a~~~~~~D~ 139 (152)
T 3dob_A 118 RLTQSDIDRMVHEAKQFEKEDG 139 (152)
T ss_dssp --CHHHHHHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhH
Confidence 5788899999999998887643
No 9
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=16.51 E-value=3.9e+02 Score=20.88 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHhHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHhhhhh
Q psy7739 77 YRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQE 136 (142)
Q Consensus 77 yrqyqeeqrvtqgeidrmtkqdekyreekqnkmmklrqdmeeslksreqmrqheklqnqe 136 (142)
.|.+.|||+ .|+.+-|+.-...++.-.-+-.+++++-..++..-..--+.+|..
T Consensus 87 IRKWREEQk------kRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR~ 140 (190)
T 3lvg_D 87 IRKWREEQR------KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140 (190)
T ss_dssp HHHHHHHHT------TTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHH------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345555554 244455666666666666777777777777666555555555543
No 10
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=14.79 E-value=74 Score=21.97 Aligned_cols=22 Identities=27% Similarity=0.438 Sum_probs=18.1
Q ss_pred hhhhhhhhhhhhhhhHHhHHHH
Q psy7739 84 QRVTQGEIDRMTKQDEKYREEK 105 (142)
Q Consensus 84 qrvtqgeidrmtkqdekyreek 105 (142)
-+++..||++|.+..++|.++-
T Consensus 116 ~~Ls~~ei~~~~~~a~~~~~~D 137 (151)
T 3dqg_A 116 GGLSKDQIENMIKEAEKNAAED 137 (151)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 3678889999999988888764
Done!