Query psy7739
Match_columns 142
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 17:33:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7739.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7739hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dkza1 a.8.4.1 (A:507-603) Dn 34.7 36 0.0026 20.2 4.7 34 87-120 2-37 (97)
2 d1o4va_ c.23.8.1 (A:) N5-CAIR 13.0 1.8E+02 0.013 19.7 5.2 33 50-82 135-167 (169)
3 d1o0pa_ d.58.7.1 (A:) Splicing 12.6 19 0.0014 21.2 -0.1 16 9-24 1-16 (104)
4 d1u00a1 a.8.4.1 (A:504-615) Ch 11.2 1.6E+02 0.012 17.5 5.6 20 87-106 2-21 (112)
5 d1jhfa1 a.4.5.2 (A:2-72) LexA 9.6 47 0.0034 19.0 0.9 27 18-44 8-34 (71)
6 d1lrza1 a.2.7.4 (A:245-309) Me 7.0 2.4E+02 0.018 16.3 3.8 31 105-135 15-45 (65)
7 d1ux5a_ a.207.1.1 (A:) Bni1 {B 6.5 2.2E+02 0.016 19.9 3.7 23 7-29 366-389 (411)
8 d1j7ja_ c.61.1.1 (A:) Hypoxant 5.1 94 0.0068 19.5 0.7 15 3-17 111-125 (172)
9 d1cjba_ c.61.1.1 (A:) Hypoxant 5.1 1E+02 0.0074 20.8 0.9 16 2-17 156-171 (228)
10 d1ot8a_ d.211.1.1 (A:) Neuroge 4.9 20 0.0015 20.8 -2.6 24 1-24 4-27 (209)
No 1
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=34.74 E-value=36 Score=20.20 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=22.2
Q ss_pred hhhhhhhhhhhhHHhHHHHHH--HHHHhhHHHHHhH
Q psy7739 87 TQGEIDRMTKQDEKYREEKQN--KMMKLRQDMEESL 120 (142)
Q Consensus 87 tqgeidrmtkqdekyreekqn--kmmklrqdmeesl 120 (142)
|..||+||-+--++|.++-.. .+...|...+.-+
T Consensus 2 S~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i 37 (97)
T d1dkza1 2 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLL 37 (97)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999998988876433 2344444444443
No 2
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=13.03 E-value=1.8e+02 Score=19.72 Aligned_cols=33 Identities=18% Similarity=0.569 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHH
Q psy7739 50 LQRQKVEYRKALEQQMQEELDKKKELKYRQYQE 82 (142)
Q Consensus 50 lqrqkveyrkaleqqmqeeldkkkelkyrqyqe 82 (142)
+...-.+||+.+.+...+.-++-.++.|..|-+
T Consensus 135 i~~kl~~~r~~~~~~v~~~~~~l~~~~~~~y~~ 167 (169)
T d1o4va_ 135 IARKVKEYKERMKREVLEKAQRLEQIGYKEYLN 167 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 445556799998888888777778888888865
No 3
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.61 E-value=19 Score=21.18 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.1
Q ss_pred CCCCcccccchhhHHH
Q psy7739 9 GPKTSKTCSRNMFTII 24 (142)
Q Consensus 9 gpktsktcsrnmftii 24 (142)
||.|.--|-+|||+.-
T Consensus 1 g~Ps~vl~l~N~~~~~ 16 (104)
T d1o0pa_ 1 GHPTEVLCLMNMVLPE 16 (104)
T ss_dssp CCCCSEEEEESSCCTT
T ss_pred CCCCcEEEEeCCCCHH
Confidence 7888888999998754
No 4
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=11.15 E-value=1.6e+02 Score=17.48 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=14.8
Q ss_pred hhhhhhhhhhhhHHhHHHHH
Q psy7739 87 TQGEIDRMTKQDEKYREEKQ 106 (142)
Q Consensus 87 tqgeidrmtkqdekyreekq 106 (142)
+.-||+||-+.-++|.++-.
T Consensus 2 S~eEIerMi~eA~~~a~eD~ 21 (112)
T d1u00a1 2 TDSEIASMIKDSMSYAEQDV 21 (112)
T ss_dssp CHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 56688888888888876543
No 5
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=9.61 E-value=47 Score=18.96 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHHhHHHHHHHHHHh
Q psy7739 18 RNMFTIIDRYYQEQMYSATQRQMLEAE 44 (142)
Q Consensus 18 rnmftiidryyqeqmysatqrqmleae 44 (142)
+..+..|..|+.+.=|+.+.|.+.++-
T Consensus 8 ~~vL~~I~~~~~~~G~~Ps~rei~~~~ 34 (71)
T d1jhfa1 8 QEVFDLIRDHISQTGMPPTRAEIAQRL 34 (71)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHc
Confidence 356788999999999999999987764
No 6
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=6.99 E-value=2.4e+02 Score=16.35 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=21.1
Q ss_pred HHHHHHHhhHHHHHhHHhHHHHHHHHHhhhh
Q psy7739 105 KQNKMMKLRQDMEESLKSREQMRQHEKLQNQ 135 (142)
Q Consensus 105 kqnkmmklrqdmeeslksreqmrqheklqnq 135 (142)
-.+++.++..|+++.-.|.-.-+++.-|..|
T Consensus 15 L~~~i~k~~~~leknP~skK~~nk~~el~~Q 45 (65)
T d1lrza1 15 LNKDLNKALKDIEKRPENKKAHNKRDNLQQQ 45 (65)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 3456778888888877777666666655544
No 7
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.52 E-value=2.2e+02 Score=19.90 Aligned_cols=23 Identities=9% Similarity=0.437 Sum_probs=13.1
Q ss_pred hhCCCCcccccc-hhhHHHHHHHH
Q psy7739 7 EFGPKTSKTCSR-NMFTIIDRYYQ 29 (142)
Q Consensus 7 efgpktsktcsr-nmftiidryyq 29 (142)
=||-..+.+++. ..|.||..|..
T Consensus 366 yfGEd~~~~~~~~~fF~~~~~F~~ 389 (411)
T d1ux5a_ 366 TYGEDSGDKFAKISFFKKFADFIN 389 (411)
T ss_dssp HTTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCCHHHHHHHHHHHHH
Confidence 366544444543 47777776654
No 8
>d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium [TaxId: 90371]}
Probab=5.10 E-value=94 Score=19.49 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.1
Q ss_pred hhhhhhCCCCccccc
Q psy7739 3 KTLLEFGPKTSKTCS 17 (142)
Q Consensus 3 ktllefgpktsktcs 17 (142)
..|+++||+..++|.
T Consensus 111 ~~l~~~~p~~i~~av 125 (172)
T d1j7ja_ 111 EILGLREPKSLAICT 125 (172)
T ss_dssp HHHHTTCBSEEEEEE
T ss_pred HHHHhhCCCceEEEE
Confidence 457899999988875
No 9
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=5.09 E-value=1e+02 Score=20.81 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.2
Q ss_pred hhhhhhhCCCCccccc
Q psy7739 2 LKTLLEFGPKTSKTCS 17 (142)
Q Consensus 2 lktllefgpktsktcs 17 (142)
++.|.++||+.-++|.
T Consensus 156 ~~~L~~~gp~sv~~av 171 (228)
T d1cjba_ 156 CEYLKKFEIKTVAIAC 171 (228)
T ss_dssp HHHHGGGCBSEEEEEE
T ss_pred HHHHHhhCcceeEEEE
Confidence 4568899999998885
No 10
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=4.94 E-value=20 Score=20.82 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred ChhhhhhhCCCCcccccchhhHHH
Q psy7739 1 MLKTLLEFGPKTSKTCSRNMFTII 24 (142)
Q Consensus 1 mlktllefgpktsktcsrnmftii 24 (142)
+++.|++-|+-...+|.++-.|.+
T Consensus 4 ~v~~Ll~~g~din~~~d~~G~t~L 27 (209)
T d1ot8a_ 4 VISDLLAQGAELNATMDKTGETSL 27 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHCCCCcCcCcCCCCCCHH
Done!