RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7739
(142 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 38.2 bits (89), Expect = 4e-04
Identities = 17/126 (13%), Positives = 47/126 (37%), Gaps = 15/126 (11%)
Query: 29 QEQMYSATQRQMLEAESKEQALQRQKVEY---RKALEQQMQEELDK---------KKELK 76
++++ + ++++ + K ++ LE E +K E +
Sbjct: 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Query: 77 YRQYQEEQRVTQGEIDRMTKQDEKYREEK---QNKMMKLRQDMEESLKSREQMRQHEKLQ 133
+ Q EI ++ K+ + + EK + K + + E+ + ++ K +
Sbjct: 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE 1038
Query: 134 NQELEK 139
+EL +
Sbjct: 1039 KEELNR 1044
Score = 33.5 bits (77), Expect = 0.017
Identities = 10/108 (9%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 37 QRQMLEAESKEQALQRQKVEYR---KALEQQMQEELDKKKEL--KYRQYQEEQRVTQGEI 91
+++ + ++ + L++++ E+ + K L K + ++
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965
Query: 92 DRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
++ EE +N ++ ++E + + + + + +E+
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLS-LQEEIAKLRKELHQTQTEKKTIEE 1012
Score = 32.8 bits (75), Expect = 0.027
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 22 TIIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKK-------E 74
II ++ + + + L+A Q R+ + EL K K
Sbjct: 868 IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM---------MAKRELKKLKIEARSVER 918
Query: 75 LKYRQYQEEQRVTQGEIDRMTKQDEKYRE--EKQNKMMKLRQDMEESLKSREQMRQHEKL 132
K E ++ Q + ++ +Q+++Y+ EK N + E L+S + + +
Sbjct: 919 YKKLHIGLENKIMQLQ-RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE 977
Query: 133 QNQELEK 139
+ +
Sbjct: 978 EAKNATN 984
Score = 28.5 bits (64), Expect = 0.71
Identities = 8/71 (11%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 29 QEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQ 88
Y Q++ ++ L + + E L +++ ++ + E ++ EE + +
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKE---ELNRRIHDQAKEITETMEKKLVEETKQLE 1069
Query: 89 GEIDRMTKQDE 99
+++ + +
Sbjct: 1070 LDLNDERLRYQ 1080
Score = 27.8 bits (62), Expect = 1.5
Identities = 9/90 (10%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 30 EQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELD-------KKKELKYRQYQE 82
++ + ++++ + +++++ ++ +Y+ EQ + E + +K+EL R + +
Sbjct: 990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Query: 83 EQRVTQGEIDRMTKQDEKYREEKQNKMMKL 112
+ +T+ ++ ++ ++ + ++ ++
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDERLRY 1079
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 37.1 bits (86), Expect = 9e-04
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 30 EQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQG 89
+Q + Q+ E E+ Q LQ +KV + ++M++++ ++ + + +E+++ +
Sbjct: 954 QQQMLDLEEQLEEEEAARQKLQLEKVTADGKI-KKMEDDILIMED-QNNKLTKERKLLEE 1011
Query: 90 EIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
+ + EEK + KL+ E + E + E+ QELEK
Sbjct: 1012 RV-SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Score = 34.8 bits (80), Expect = 0.006
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 29 QEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELK--YRQYQEEQRV 86
++Q +M +E+ +Q +K ++QQM + ++ +E + ++ Q E+
Sbjct: 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 87 TQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
G+I +M E++ NK+ K R+ +EE + E+ + + L K
Sbjct: 981 ADGKIKKMEDDILIM-EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Score = 34.0 bits (78), Expect = 0.012
Identities = 20/110 (18%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 35 ATQRQMLEAESKEQALQRQKVEYRKALEQ-----QMQEELDKKKELKYRQYQEEQRVTQG 89
A EAE L +K E + L + + +EE ++ + + ++ Q++ +
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
Query: 90 EIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
+++ +K + EK K+++ ME+ + E + + LE+
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKK-MEDDILIMEDQNNKLTKERKLLEE 1011
Score = 32.1 bits (73), Expect = 0.044
Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 4/134 (2%)
Query: 11 KTSKTCSRNMFTIIDRYYQEQMYSATQRQMLEAESK---EQALQRQKVEYRKALEQQMQE 67
+ +T R + EQ ++ + + K E L + E R L + QE
Sbjct: 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQE 924
Query: 68 ELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKL-RQDMEESLKSREQM 126
+ E++ R +EE+R Q + ++ Q + E+Q + + RQ ++ + +
Sbjct: 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Query: 127 RQHEKLQNQELEKT 140
+ + +E
Sbjct: 985 IKKMEDDILIMEDQ 998
Score = 31.7 bits (72), Expect = 0.078
Identities = 15/112 (13%), Positives = 42/112 (37%), Gaps = 1/112 (0%)
Query: 25 DRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQ 84
++ + Q A + L + +E ++E + + +++ ++ E QE+
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI-RELESHISDLQEDL 1132
Query: 85 RVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQE 136
+ ++ KQ EE + +L ++ + +E K + +
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 31.3 bits (71), Expect = 0.10
Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 30 EQMYSATQRQMLEAESKEQALQRQKVEYRKALEQ---QMQEELDKKKELKYRQYQEEQRV 86
+ + +L E + L +++ + + + EE +K K L + + E +
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041
Query: 87 TQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
+ E++ K++EK R+E + KL + + + +++ +L K
Sbjct: 1042 S--ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Score = 31.3 bits (71), Expect = 0.11
Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 29 QEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQ 88
E M S + ++ + E Q L++ K + ++ + + ++ + + + +
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA--ELKAQLAKKE 1094
Query: 89 GEIDRMTKQDEKYREEKQNKMMKLR------QDMEESLKSREQMRQHEKLQNQELEK 139
E+ + E +K N + K+R D++E L+S + R + Q ++L +
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151
Score = 30.2 bits (68), Expect = 0.24
Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 38 RQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKEL--KYRQYQEEQRVTQGEIDRMT 95
+ E + + Q++ K LEQ+ + ++K L K + E + R+
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 96 KQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
+ ++ EE ++M ++ EE + + ++ + Q +LE+
Sbjct: 920 AK-KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.003
Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 60 ALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEES 119
A ++ +E + R+++EEQR R+ + D + +Q K ++D+EE
Sbjct: 75 AQADRLTQEPESI-----RKWREEQR------KRLQELDAASKVMEQEWREKAKKDLEEW 123
Query: 120 LKSREQMRQHEKLQNQELEK 139
+ + + + K+ N+ +K
Sbjct: 124 NQRQSEQVEKNKINNRIADK 143
Score = 25.9 bits (56), Expect = 5.0
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 20/93 (21%)
Query: 34 SATQRQMLEAES-----KEQALQ-RQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVT 87
+ R E ES +EQ + ++ K +EQ+ +E+ K E ++ E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE----- 129
Query: 88 QGEIDRMTKQDEKYREEKQNKMMKLRQDMEESL 120
Q EK + + Q + +
Sbjct: 130 ---------QVEKNKINNRIADKAFYQQPDADI 153
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 33.5 bits (77), Expect = 0.018
Identities = 12/114 (10%), Positives = 42/114 (36%)
Query: 26 RYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQR 85
++ ++ S R ++ Q+ EY+K + +E+ + + + + +
Sbjct: 780 QWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRL 839
Query: 86 VTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
+ + + + + K Q+ E+L+ + ++ + Q+ +
Sbjct: 840 IKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNR 893
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.4 bits (73), Expect = 0.035
Identities = 11/97 (11%), Positives = 41/97 (42%)
Query: 44 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYRE 103
Q K Q+ +EE+ + + ++ + E + + E+ + +K +
Sbjct: 317 PFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQ 376
Query: 104 EKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKT 140
+++ K+ ++ +++ + + +Q + +L + +
Sbjct: 377 DEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQA 413
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 31.7 bits (73), Expect = 0.065
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 85 RVTQGEIDRMTKQDEKYREE--KQNKMMKLRQDME 117
R+++ +I+RM ++ EKY+ E KQ + + +E
Sbjct: 509 RLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.18
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 22/98 (22%)
Query: 50 LQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKM 109
L +Q+ +K +E E L + + EQR T+ + R+ N
Sbjct: 72 LSKQEEMVQKFVE----EVLRINYKFLMSPIKTEQRQPSMM----TRMYIEQRDRLYN-- 121
Query: 110 MKLRQDMEESLK---SREQMRQHEKLQN--QELEKTPW 142
D + K SR Q + KL+ EL
Sbjct: 122 -----DNQVFAKYNVSRLQP--YLKLRQALLELRPAKN 152
Score = 25.6 bits (55), Expect = 7.7
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 24 IDRYYQEQMYS--ATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKY 77
+++ +E S + ++ E AL R V++ + ++L +Y
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 29.6 bits (67), Expect = 0.23
Identities = 8/47 (17%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 39 QMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQR 85
+L + E + R+ EY++ +++++ E+ + +++ Y++Y ++
Sbjct: 139 SILGIKYPE--IARKVKEYKERMKREVLEKAQRLEQIGYKEYLNQKE 183
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 29.5 bits (67), Expect = 0.26
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 85 RVTQGEIDRMTKQDEKYREE 104
R+TQ +IDRM + +++ +E
Sbjct: 118 RLTQSDIDRMVHEAKQFEKE 137
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 29.1 bits (66), Expect = 0.29
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 85 RVTQGEIDRMTKQDEKYREE 104
R+TQ EIDRM ++ EK+ E
Sbjct: 118 RLTQEEIDRMVEEAEKFASE 137
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.8 bits (66), Expect = 0.35
Identities = 18/112 (16%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 29 QEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKE-LKYRQYQEEQRVT 87
++ + + Q LE E++ + L+RQK+ + E+ +E L+ + + +
Sbjct: 668 SQEAAAKHEAQRLEQEARGR-LERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEA 726
Query: 88 QGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
+ + + E + + K L + E L+ +++R+ E + + +
Sbjct: 727 ESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLE 778
Score = 26.3 bits (57), Expect = 4.3
Identities = 16/104 (15%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 40 MLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQD- 98
++ +S E QR + +++++ ++ + ++ + Q ++ +G ++R D
Sbjct: 637 SVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQ 696
Query: 99 ---EKYREE-KQNKMMKLRQDMEESLKSREQMRQHEKLQNQELE 138
EK R+E + + M + + + K+ + R E
Sbjct: 697 SEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGS 740
Score = 25.9 bits (56), Expect = 6.2
Identities = 16/116 (13%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 26 RYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQM--QEELDKKKELKYRQYQEE 83
R QE ++++L+ E+A + ++ + + + + + + + E
Sbjct: 679 RLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGE 738
Query: 84 QRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
V Q ++ E E ++ K ++ + + + ++ + ++L N E +K
Sbjct: 739 GSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKK 794
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta
barrel, nucleotidyltransferase; 3.57A {Homo sapiens}
PDB: 3r2w_A
Length = 528
Score = 29.4 bits (65), Expect = 0.38
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 34 SATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDR 93
S + + +A S++ A Q Q+ R+ LE +++EL+K + E T+ ++D
Sbjct: 22 SRFVQDLSKAMSQDGASQFQE-VIRQELELSVKKELEK---ILTTASSHEFEHTKKDLDG 77
Query: 94 MTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
K ++ +EK + + + ++ +EK++ + L
Sbjct: 78 FRKLFHRFLQEKGP---SVDWGKIQRPP-EDSIQPYEKIKARGLPD 119
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 28.7 bits (65), Expect = 0.40
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 85 RVTQGEIDRMTKQDEKYREE 104
R++ +I+RM +K+ +
Sbjct: 118 RLSPEDIERMINDADKFAAD 137
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 28.4 bits (64), Expect = 0.57
Identities = 7/44 (15%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 39 QMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQE 82
+ML A + + L+ + V ++ L + + + + L + ++
Sbjct: 133 RMLGAANPQ--LRARIVAFQDRLADVVAAKDAELQRLAGKLTRD 174
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.7 bits (65), Expect = 0.71
Identities = 18/115 (15%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 37 QRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYR----QYQEEQRVTQG--- 89
+R+ L+ E + +AL+++K + + ++ E+ K E + +++ E+ + +
Sbjct: 407 ERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTE-EIAKLRAEWEREREILRKLRE 465
Query: 90 ---EIDRMTKQDEKY-REEKQNKMMKLR----QDMEESLKSREQMRQHEKLQNQE 136
+D + ++ E R+ N+ +LR +E +++ + + + E
Sbjct: 466 AQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLE 520
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 28.2 bits (63), Expect = 0.83
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 44 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEID 92
E + ++ + +++ + L E++ + E+ V GE
Sbjct: 267 EIAGKRREQDVKWMWALVHERLHQRLVGSAEVRQATAEAERAVAGGEHS 315
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.2
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 5/18 (27%)
Query: 104 EKQNKMMKLRQDMEESLK 121
EKQ + KL + SLK
Sbjct: 18 EKQ-ALKKL----QASLK 30
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 28.1 bits (63), Expect = 1.3
Identities = 5/60 (8%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 85 RVTQGEIDRMTKQDEKYREE--KQNKMMKLRQDMEE---SLKSREQMRQHEKLQNQELEK 139
+ +++ + +++ + + + + +EE +L+ + + + E K
Sbjct: 523 GLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTK 582
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 27.4 bits (60), Expect = 1.9
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 47 EQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQ 106
E++ + R ++++ EL + + L+ + E+ + ++ E
Sbjct: 896 EKSARALIDAARNEADEKLSAELSRLEALRAVN----PNIRDDELTAIESNRQQVMESLD 951
Query: 107 NKMMKL 112
+L
Sbjct: 952 QAGWRL 957
>2ksd_A Aerobic respiration control sensor protein ARCB; methods
development, histidine kinase receptor, membrane domain,
two-helical hairpin; NMR {Escherichia coli}
Length = 115
Score = 26.4 bits (58), Expect = 2.1
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 113 RQDMEESLKSREQMRQHEKLQNQELEK 139
RQ + ++ E+MR+ + N +L+
Sbjct: 84 RQRLSRLVQKLEEMRERDLSLNVQLKD 110
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 26.8 bits (59), Expect = 2.7
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 46 KEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEID 92
+ ++QKV +++ + E ++ + EQ+V G +
Sbjct: 287 TAKRRKQQKVWMWNLIQESVLEHFRTHPTVREQIPLLEQKVLIGALS 333
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 26.7 bits (59), Expect = 3.3
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 44 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEID 92
++ Q+ RK E+++ L ++ Q V +
Sbjct: 267 RLQQVRQQQSVEWLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLS 315
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 26.4 bits (58), Expect = 4.3
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 46 KEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEID 92
+ +Q + + + + + ++ + + E+RV GE+
Sbjct: 292 DARRRDQQVDWTWQLVRDAVLDRVWSNPTVRKVRSELERRVRAGELT 338
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 25.8 bits (56), Expect = 6.5
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 26 RYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQE 67
+Y +YS QR ++ ++ K K +E Q
Sbjct: 212 DHYTNGLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSY 253
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.9 bits (56), Expect = 6.6
Identities = 16/105 (15%), Positives = 47/105 (44%)
Query: 34 SATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDR 93
+ + A ++ A ++M+ E+++ E+K ++ ++ + ++ E+ R
Sbjct: 303 VDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQR 362
Query: 94 MTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELE 138
+Q +K E + ++ + R+ E+ + E ++ + QN
Sbjct: 363 RHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRT 407
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L
structural genomics, center for structural genomics of
INFE diseases; 2.70A {Salmonella enterica subsp}
Length = 175
Score = 25.1 bits (54), Expect = 9.0
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 44 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYRE 103
++ Q+ +Y Q+ + K+ E +I+ + K+ E +
Sbjct: 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEY--NALLTASSPDTAKINAVAKEMESLGQ 127
Query: 104 EKQNKMMKLRQDMEESLKSREQMRQHEK 131
+ + +K M ++ R +
Sbjct: 128 KLDEQRVKRDVAMAQAGIPRGAGMGYGG 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.123 0.322
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,943,721
Number of extensions: 102805
Number of successful extensions: 698
Number of sequences better than 10.0: 1
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 269
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.4 bits)