RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7739
         (142 letters)



>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
          Length = 169

 Score = 26.7 bits (59), Expect = 0.71
 Identities = 6/36 (16%), Positives = 24/36 (66%)

Query: 49  ALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQ 84
            + R+  EY++ +++++ E+  + +++ Y++Y  ++
Sbjct: 134 EIARKVKEYKERMKREVLEKAQRLEQIGYKEYLNQK 169


>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
           extorquens [TaxId: 408]}
          Length = 323

 Score = 25.6 bits (55), Expect = 2.8
 Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 24  IDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEE 83
           +    ++     T    +  + +EQ ++       + L Q++    + ++       + E
Sbjct: 247 LWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHERLHQRLVGSAEVRQATA----EAE 302

Query: 84  QRVTQGEID 92
           + V  GE  
Sbjct: 303 RAVAGGEHS 311


>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 653

 Score = 25.1 bits (54), Expect = 4.8
 Identities = 5/63 (7%), Positives = 19/63 (30%)

Query: 76  KYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQ 135
           K  +   ++      ++       +   +  +   ++ QD   +      +   +  +  
Sbjct: 377 KLPELTAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPGSTKTRSRFLDILKDGKTN 436

Query: 136 ELE 138
            LE
Sbjct: 437 NLE 439


>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate
           decarboxylase {Plasmodium falciparum (isolate 3D7)
           (Plasmodium falciparum 3D7) [TaxId: 36329]}
          Length = 323

 Score = 24.6 bits (52), Expect = 5.6
 Identities = 6/29 (20%), Positives = 13/29 (44%)

Query: 38  RQMLEAESKEQALQRQKVEYRKALEQQMQ 66
           R + +    ++A Q    +    L+Q M+
Sbjct: 294 RAITKNPYPQKAAQMYYDQINAILKQNME 322


>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
           KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 433

 Score = 23.8 bits (51), Expect = 9.6
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 88  QGEIDRMTKQDEKYR-EEKQNKMMKLRQDMEESLKSR 123
            G+ + + K   K   EE Q ++ K  +    S + R
Sbjct: 325 LGDFNLIAK--TKTELEETQRELRKEEEAKGISWQRR 359


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.123    0.322 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,794
Number of extensions: 20050
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 75
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (22.7 bits)