BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7740
         (184 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s
 pdb|1MVN|A Chain A, Ppc Decarboxylase Mutant C175s Complexed With
           Pantothenoylaminoethenethiol
          Length = 209

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 47/67 (70%)

Query: 114 LNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDA 173
           +  V+TK + HF+  L     +  Y+D+DEW SW K GDPVLHIEL +W D++V+APL A
Sbjct: 48  VRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSA 107

Query: 174 NTLAKLA 180
           NTL K+A
Sbjct: 108 NTLGKIA 114


>pdb|1E20|A Chain A, The Fmn Binding Protein Athal3
          Length = 209

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 47/67 (70%)

Query: 114 LNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDA 173
           +  V+TK + HF+  L     +  Y+D+DEW SW K GDPVLHIEL +W D++V+APL A
Sbjct: 48  VRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSA 107

Query: 174 NTLAKLA 180
           NTL K+A
Sbjct: 108 NTLGKIA 114


>pdb|1QZU|A Chain A, Crystal Structure Of Human Phosphopantothenoylcysteine
           Decarboxylase
 pdb|1QZU|B Chain B, Crystal Structure Of Human Phosphopantothenoylcysteine
           Decarboxylase
 pdb|1QZU|C Chain C, Crystal Structure Of Human Phosphopantothenoylcysteine
           Decarboxylase
 pdb|1QZU|D Chain D, Crystal Structure Of Human Phosphopantothenoylcysteine
           Decarboxylase
          Length = 206

 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 9/106 (8%)

Query: 76  EFNILLCCTGSVATXXXXXXXXXXXXXXYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNI 135
           +F++L+  TGSVA                +   I  + + VV T+ A HF    P    +
Sbjct: 19  KFHVLVGVTGSVAALKLPLLVS-------KLLDIPGLEVAVVTTERAKHFYS--PQDIPV 69

Query: 136 RFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
             YSD DEW  W+ R DPVLHI+L +W D++++APLDANTL K+A+
Sbjct: 70  TLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVAS 115


>pdb|1P3Y|1 Chain 1, Mrsd From Bacillus Sp. Hil-y85/54728
          Length = 194

 Score = 32.0 bits (71), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 114 LNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDA 173
           + VVMTK A   +P      +   Y  D  +    + G    H+E+ +W DI  + P  A
Sbjct: 38  IRVVMTKTAEDLIP-----AHTVSYFCDHVYSEHGENGKRHSHVEIGRWADIYCIIPATA 92

Query: 174 NTLAKLA 180
           N L + A
Sbjct: 93  NILGQTA 99


>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
           Archaeoglobus Fulgidus
 pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
           Archaeoglobus Fulgidus
          Length = 313

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 2   SSMTFGQKKFIPTAPDKGSFPLDHYG----DCKAFMTKY 36
           +S  +G+ K IPT  D  + P+  YG     C+A +  Y
Sbjct: 114 TSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESY 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,557,106
Number of Sequences: 62578
Number of extensions: 212176
Number of successful extensions: 383
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 5
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)