BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7740
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8E4L1|COX19_BOVIN Cytochrome c oxidase assembly protein COX19 OS=Bos taurus
GN=COX19 PE=2 SV=1
Length = 89
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
++M FG K F P PDKGSFPLDH+G+CK+F K+M C++ NN +++ CR+E K+YL CR
Sbjct: 3 TAMNFGSKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDNNFENALCRNESKEYLECR 62
Query: 62 MEKELMAKEDWEKLEFNILL 81
ME++LMA+E EKL F L+
Sbjct: 63 MERQLMAQEPLEKLGFGDLI 82
>sp|Q8K0C8|COX19_MOUSE Cytochrome c oxidase assembly protein COX19 OS=Mus musculus
GN=Cox19 PE=3 SV=1
Length = 92
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 59/80 (73%)
Query: 2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
++M FG K F P PDKGSFPLDH+G+CK+F K+M C++ N +++ CR+E K+YL CR
Sbjct: 3 TAMNFGTKSFQPRPPDKGSFPLDHFGECKSFKEKFMRCLRDKNYENALCRNESKEYLMCR 62
Query: 62 MEKELMAKEDWEKLEFNILL 81
M+++LMA E EKL F L+
Sbjct: 63 MQRQLMAPEPLEKLGFRDLM 82
>sp|Q49B96|COX19_HUMAN Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens
GN=COX19 PE=1 SV=1
Length = 90
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 56/79 (70%)
Query: 2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
++M FG K F P PDKGSFPLDH G+CK+F K+M C+ NN +++ CR E K+YL CR
Sbjct: 3 TAMNFGTKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
Query: 62 MEKELMAKEDWEKLEFNIL 80
ME++LM +E EKL F L
Sbjct: 63 MERKLMLQEPLEKLGFGDL 81
>sp|Q8BZB2|COAC_MOUSE Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc
PE=2 SV=1
Length = 204
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 9/109 (8%)
Query: 73 EKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK 132
E+ +F +L+ TGSVA +KLP L+ ++ + + + VV T+ A HF P
Sbjct: 14 EERKFRVLVGVTGSVAALKLPLLVSKLLDVPG-------LEVTVVTTERAKHFYS--PQD 64
Query: 133 PNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
+ YSD DEW W++R DPVLHI+L +W D++++APLDANTL K+A+
Sbjct: 65 VPVTLYSDADEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVAS 113
>sp|Q9SWE5|HAL3A_ARATH Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana
GN=HAL3A PE=1 SV=1
Length = 209
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 68 AKEDWEKLEFN-------ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTK 120
K D + +E N +LL +GSVA IK L + + V+TK
Sbjct: 4 GKRDRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWA---------EVRAVVTK 54
Query: 121 HAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
+ HF+ L + Y+D+DEW SW K GDPVLHIEL +W D++V+APL ANTL K+A
Sbjct: 55 SSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIA 114
>sp|P94063|HAL3B_ARATH Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis
thaliana GN=HAL3B PE=2 SV=2
Length = 201
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFV--PDLPHKPNIR 136
ILL +GSVA+IK L + + V +K + +FV P LP N+
Sbjct: 14 ILLAASGSVASIKFSNLCHCFSEWA---------EVKAVASKSSLNFVDKPSLPQ--NVT 62
Query: 137 FYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
Y+D+DEW SW K GDPVLHIEL +W D++++APL ANTLAK+A
Sbjct: 63 LYTDEDEWSSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIA 106
>sp|Q96CD2|COAC_HUMAN Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC
PE=1 SV=2
Length = 204
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 9/106 (8%)
Query: 76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNI 135
+F++L+ TGSVA +KLP L+ ++ + + + VV T+ A HF P +
Sbjct: 17 KFHVLVGVTGSVAALKLPLLVSKLLDIPG-------LEVAVVTTERAKHFYS--PQDIPV 67
Query: 136 RFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
YSD DEW W+ R DPVLHI+L +W D++++APLDANTL K+A+
Sbjct: 68 TLYSDADEWEIWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVAS 113
>sp|P0CM86|COX19_CRYNJ Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=COX19 PE=3 SV=1
Length = 115
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 4 MTFGQKKFI----PTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLG 59
M+FG+ F P+ P +GSFPLDH G+CKAFM Y+ C+K+N +D+ CR K YL
Sbjct: 1 MSFGRPGFADVFKPSPPARGSFPLDHDGECKAFMISYLKCMKENANDNGKCRLFSKQYLE 60
Query: 60 CRMEKELMAKEDWEKL 75
CRM+K LMA++D L
Sbjct: 61 CRMDKGLMARDDMANL 76
>sp|P0CM87|COX19_CRYNB Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=COX19 PE=3 SV=1
Length = 115
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 4 MTFGQKKFI----PTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLG 59
M+FG+ F P+ P +GSFPLDH G+CKAFM Y+ C+K+N +D+ CR K YL
Sbjct: 1 MSFGRPGFADVFKPSPPARGSFPLDHDGECKAFMISYLKCMKENANDNGKCRLFSKQYLE 60
Query: 60 CRMEKELMAKEDWEKL 75
CRM+K LMA++D L
Sbjct: 61 CRMDKGLMARDDMANL 76
>sp|Q5AL10|COX19_CANAL Cytochrome c oxidase assembly protein COX19 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=COX19 PE=3 SV=1
Length = 133
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 9 KKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIK-KNNSDSSACRDEIKDYLGCRMEKELM 67
+ + PT P++GSFPLDH G+CK +MTKY+ C+K N ++ CR K YL CRM+ +LM
Sbjct: 12 RTWTPTPPERGSFPLDHDGECKEYMTKYLTCMKFTENKNAPNCRILAKQYLKCRMDNQLM 71
Query: 68 AKEDWEKL 75
K DW+ L
Sbjct: 72 EKSDWDSL 79
>sp|P36076|CAB3_YEAST Coenzyme A biosynthesis protein 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CAB3 PE=1 SV=1
Length = 571
Score = 77.4 bits (189), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 75/123 (60%), Gaps = 13/123 (10%)
Query: 65 ELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFH 124
E KED +K F+IL+ TGSVATIK+P +I+++ ++ Y KI I +++TK A H
Sbjct: 299 EFFQKEDDKK--FHILIGATGSVATIKVPLIIDKLFKI-YGPEKISI---QLIVTKPAEH 352
Query: 125 FVPDLPHKPNIRFYSDDDEWI-SWEKRGDP------VLHIELSKWCDIIVLAPLDANTLA 177
F+ L +++ + ++D W+ + D +LH EL KW DI ++APL ANTLA
Sbjct: 353 FLKGLKMSTHVKIWREEDAWVFDAVNKNDTSLSLNLILHHELRKWADIFLIAPLSANTLA 412
Query: 178 KLA 180
KLA
Sbjct: 413 KLA 415
>sp|Q08438|VHS3_YEAST Phosphopantothenoylcysteine decarboxylase subunit VHS3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=VHS3 PE=1 SV=1
Length = 674
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
Query: 113 NLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLD 172
N + V+++H P + +I+F++D DEW W +R DPVLHIEL +W DI+V+APL
Sbjct: 421 NSSNVVSQH-----PQIELPAHIQFWTDQDEWDVWRQRTDPVLHIELRRWADILVVAPLT 475
Query: 173 ANTLAKLA 180
ANTLAK+A
Sbjct: 476 ANTLAKIA 483
>sp|Q4P821|COX19_USTMA Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=COX19 PE=3 SV=1
Length = 197
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 4 MTFGQ----KKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLG 59
M+FG+ F + P++GSFPLDH G+CK+ M +YM CIK N +D+ CR + YL
Sbjct: 1 MSFGRPPTFSDFKVSPPERGSFPLDHDGECKSVMQEYMNCIKYNRNDNGKCRHLSRAYLQ 60
Query: 60 CRMEKELMAKEDWEKLEF 77
CRM+K LM +++ + L F
Sbjct: 61 CRMDKGLMEQDNMDNLGF 78
>sp|P36024|SIS2_YEAST Phosphopantothenoylcysteine decarboxylase subunit SIS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SIS2 PE=1 SV=1
Length = 562
Score = 75.9 bits (185), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 47/146 (32%)
Query: 76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHF---------- 125
+ ++L TGS++ K+ +I+++E++ Y ++I I V++T+ A F
Sbjct: 263 KLHVLFGATGSLSVFKIKPMIKKLEEI-YGRDRISI---QVILTQSATQFFEQRYTKKII 318
Query: 126 -------------------------------VPDLPHKPNIRFYSDDDEWISWEKRGDPV 154
V +LP P+I+ ++D DEW +W++R DPV
Sbjct: 319 KSSEKLNKMSQYESTPATPVTPTPGQCNMAQVVELP--PHIQLWTDQDEWDAWKQRTDPV 376
Query: 155 LHIELSKWCDIIVLAPLDANTLAKLA 180
LHIEL +W DI+V+APL ANTL+K+A
Sbjct: 377 LHIELRRWADILVVAPLTANTLSKIA 402
>sp|Q12600|SIS2_CANTR Protein SIS2 OS=Candida tropicalis GN=SIS2 PE=3 SV=1
Length = 531
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNI 135
+F++L+ G+++ K+ ++ ++ ++ Y +KI I V++TK + +F+ LP N+
Sbjct: 267 KFHVLIGVCGALSVGKVKLIVNKLLEI-YTSDKISI---QVILTKSSENFL--LPETLNV 320
Query: 136 -------RFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
R ++D DEW +W+ R DPVLHIEL +W DI+++ PL ANTLAK++
Sbjct: 321 LENVKKVRVWTDIDEWTTWKTRLDPVLHIELRRWADILLVCPLTANTLAKIS 372
>sp|Q6FVQ3|COX19_CANGA Cytochrome c oxidase assembly protein COX19 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=COX19 PE=3 SV=1
Length = 86
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 1 MSSMTFGQ--KKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIK-KNNSDSSACRDEIKDY 57
MSS G + PT P++GSFPLDH G+C +M KY+ C++ N ++ CR KDY
Sbjct: 1 MSSGNPGGALRALSPTPPERGSFPLDHDGECAEYMQKYLQCMRLAANENAHNCRLLAKDY 60
Query: 58 LGCRMEKELMAKEDWEKL 75
L CRM+ +LM K++W+ L
Sbjct: 61 LKCRMDHQLMDKDEWKNL 78
>sp|Q54IA0|COX19_DICDI Cytochrome c oxidase assembly protein COX19 OS=Dictyostelium
discoideum GN=cox19 PE=3 SV=1
Length = 106
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 4 MTFGQKKFI--PTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
M F I PT PDKGSFPLDH +C M Y+ C+ +NN S C + K+YL CR
Sbjct: 1 MQFAHNSSIQKPTPPDKGSFPLDHDSECSKPMLAYVNCLSENNGLSRFCMEFSKEYLKCR 60
Query: 62 MEKELMAKEDWEKLEF 77
M+ LMAKED + F
Sbjct: 61 MDNNLMAKEDMDNFGF 76
>sp|Q6CS47|COX19_KLULA Cytochrome c oxidase assembly protein COX19 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=COX19 PE=3 SV=1
Length = 99
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 9 KKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIK-KNNSDSSACRDEIKDYLGCRMEKELM 67
K PT P++GSFPLDH GDC M +Y+ CIK ++ CR K+YL CRM+ +LM
Sbjct: 10 KALSPTPPERGSFPLDHDGDCTKQMQEYLSCIKLVKGENAPNCRLLAKEYLKCRMDNKLM 69
Query: 68 AKEDWEKL 75
++DW+ L
Sbjct: 70 DRDDWKHL 77
>sp|Q9UTI7|TYSY_SCHPO Probable thymidylate synthase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC15E1.04 PE=3 SV=1
Length = 625
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 67/107 (62%), Gaps = 10/107 (9%)
Query: 76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVP--DLPHKP 133
+++IL+ TGSVA IKL +++ + L Y+ +++ VV+T A +FV DL
Sbjct: 30 KYHILVAATGSVAAIKLTLIVKSL--LTYKG-----VDVQVVLTDPARNFVEKEDLTAL- 81
Query: 134 NIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
+ Y++ D+W +W+ P+ HIEL +W ++++APL ANT+AK+A
Sbjct: 82 GVNVYNNADDWKNWDGLECPITHIELRRWAHLLLIAPLSANTMAKMA 128
>sp|Q3E731|COX19_YEAST Cytochrome c oxidase assembly protein COX19 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX19 PE=1
SV=1
Length = 98
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 13 PTAPDKGSFPLDHYGDCKAFMTKYMICIK-KNNSDSSACRDEIKDYLGCRMEKELMAKED 71
PT P++GSFPLDH G+C +M +Y+ C++ N ++ CR KDYL CRM+ +LM ++
Sbjct: 14 PTPPERGSFPLDHDGECTKYMQEYLKCMQLVQNENAMNCRLLAKDYLRCRMDHQLMDYDE 73
Query: 72 WEKL 75
W L
Sbjct: 74 WSHL 77
>sp|Q462Q7|COX19_PARBR Cytochrome c oxidase assembly protein COX19 OS=Paracoccidioides
brasiliensis GN=COX19 PE=3 SV=1
Length = 107
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 4 MTFGQK-----KFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNS-DSSACRDEIKDY 57
M+FG P P++GSFPLDH G+CK ++ Y+ C+KK + CR K Y
Sbjct: 1 MSFGSPGGRSVNIKPKPPERGSFPLDHDGECKFIISSYLQCLKKGGGVNDETCRKLAKSY 60
Query: 58 LGCRMEKELMAKEDWEKL 75
L CRM+ LMA E +E L
Sbjct: 61 LSCRMDHNLMAPECFENL 78
>sp|O14056|COX19_SCHPO Cytochrome c oxidase assembly protein cox19, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox19 PE=3 SV=2
Length = 112
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 16 PDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMAKEDWEKL 75
P++GSFPLDH+G+C M +Y+ CIK + CR K YL CRM+ L K+D + L
Sbjct: 18 PERGSFPLDHFGECTHVMKQYLECIKVKRENQEECRLLAKKYLQCRMDTGLFGKDDMKNL 77
Query: 76 EFN 78
F+
Sbjct: 78 GFH 80
>sp|Q75AF9|COX19_ASHGO Cytochrome c oxidase assembly protein COX19 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=COX19 PE=3 SV=2
Length = 99
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 9 KKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIK-KNNSDSSACRDEIKDYLGCRMEKELM 67
+ PT P++GSFPLDH G+C A M +Y+ C+K ++ CR ++YL CRM+ LM
Sbjct: 10 QALSPTPPERGSFPLDHEGECTAQMMEYLNCMKLVRGENAPNCRLLARNYLKCRMDHRLM 69
Query: 68 AKEDWEKL 75
+++W L
Sbjct: 70 DRDEWAHL 77
>sp|Q54433|COAC_STRMU Probable phosphopantothenoylcysteine decarboxylase OS=Streptococcus
mutans serotype c (strain ATCC 700610 / UA159) GN=coaC
PE=3 SV=2
Length = 179
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 14/104 (13%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
ILL +GS+A K +L Q+ +L Y ++NV+MT A F+P L ++
Sbjct: 5 ILLAVSGSIAAYKAADLSHQLTKLGY--------HVNVLMTNAAKQFIPPL----TLQVL 52
Query: 139 SDDDEWISWEKRGDP--VLHIELSKWCDIIVLAPLDANTLAKLA 180
S + + + K DP + HI L+K D+ +LAP ANTLA LA
Sbjct: 53 SKNPVYSNVMKEDDPQVINHIALAKQADLFLLAPASANTLAHLA 96
>sp|Q54Y51|COAC_DICDI Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium
discoideum GN=ppcdc PE=3 SV=1
Length = 197
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK---PN 134
N++L TGSVATIK L+EQ+ Q FN I V+ T+ + F+ D +
Sbjct: 14 NLILGLTGSVATIKAKLLVEQLIQ---HFNLI------VIPTETSLKFLSDQDFEFISSK 64
Query: 135 IRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
+ Y D DEW + + LHI+L W + I+++P ANTL K++
Sbjct: 65 CKIYKDKDEWENVDLLKRSALHIDLRNWANSILISPCSANTLGKIS 110
>sp|P73881|COABC_SYNY3 Coenzyme A biosynthesis bifunctional protein CoaBC OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=coaBC PE=3 SV=1
Length = 402
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
IL+ G +A K+ E++ Q+ Q E + V++T A FV L R
Sbjct: 6 RILIGVGGGIAAYKICEVVSQLFQQGAE--------VRVILTAEAEKFVTPLTFTTLARH 57
Query: 138 --YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
Y D D W R LHI+L +W DI ++APL A+TLAKL
Sbjct: 58 PAYGDADFWQPIHHR---PLHIDLGEWADIFLIAPLTAHTLAKLG 99
>sp|O35033|COABC_BACSU Probable coenzyme A biosynthesis bifunctional protein CoaBC
OS=Bacillus subtilis (strain 168) GN=coaBC PE=3 SV=1
Length = 406
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
N+LLC +G +A K L ++ Q N+ V+MT+ A FV L + R
Sbjct: 6 NVLLCVSGGIAVYKACALTSKLVQAGA--------NVKVIMTESACRFVSPLTFQALSRH 57
Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
D + E+ + HI+ + W D+I++AP AN + KLA
Sbjct: 58 EVYTDTF--KEQNPSVISHIDAADWADLIIVAPATANVIGKLA 98
>sp|Q5E8M6|COABC_VIBF1 Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=coaBC PE=3 SV=1
Length = 409
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
ILL +G +A K EL ++ + E + VVMTK A F+ L + + +
Sbjct: 9 ILLGISGGIAAYKCAELTRRLIERGAE--------VRVVMTKAAKEFITPLTMQA-VSGH 59
Query: 139 SDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
D + + HIEL+KW DI++LAP A+ +A++A
Sbjct: 60 PVADSLLDPAAEAS-MGHIELAKWADIVLLAPATADLIARMAA 101
>sp|P0ABQ0|COABC_ECOLI Coenzyme A biosynthesis bifunctional protein CoaBC OS=Escherichia
coli (strain K12) GN=coaBC PE=1 SV=2
Length = 406
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
I+L +G +A K PEL+ ++ + + V MT+ A F+ L + + Y
Sbjct: 8 IVLGVSGGIAAYKTPELVRRLRDRGAD--------VRVAMTEAAKAFITPLSLQ-AVSGY 58
Query: 139 SDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
D + + HIEL KW D+++LAP A+ +A++A
Sbjct: 59 PVSDSLLDPAAEA-AMGHIELGKWADLVILAPATADLIARVAA 100
>sp|P0ABQ1|COABC_ECOL6 Coenzyme A biosynthesis bifunctional protein CoaBC OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=coaBC
PE=3 SV=2
Length = 406
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
I+L +G +A K PEL+ ++ + + V MT+ A F+ L + + Y
Sbjct: 8 IVLGVSGGIAAYKTPELVRRLRDRGAD--------VRVAMTEAAKAFITPLSLQ-AVSGY 58
Query: 139 SDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
D + + HIEL KW D+++LAP A+ +A++A
Sbjct: 59 PVSDSLLDPAAEA-AMGHIELGKWADLVILAPATADLIARVAA 100
>sp|Q8DDX8|COABC_VIBVU Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
vulnificus (strain CMCP6) GN=coaBC PE=3 SV=1
Length = 401
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKP-NIRF 137
ILL +G +A K +L ++++ E + VVMTK A F+ L + + R
Sbjct: 9 ILLGISGGIAAYKCADLTRRLKERGAE--------VQVVMTKAAKEFITPLTMQAVSGRP 60
Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
SD + E + HIEL+KW D+I+LAP A+ +A++A
Sbjct: 61 VSDSLLDPAAEAS---MGHIELAKWADLILLAPATADLIARMA 100
>sp|Q7MPS9|COABC_VIBVY Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
vulnificus (strain YJ016) GN=coaBC PE=3 SV=2
Length = 401
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKP-NIRF 137
ILL +G +A K +L ++++ E + VVMTK A F+ L + + R
Sbjct: 9 ILLGISGGIAAYKCADLTRRLKERGAE--------VQVVMTKAAKEFITPLTMQAVSGRP 60
Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
SD + E + HIEL+KW D+I+LAP A+ +A++A
Sbjct: 61 VSDSLLDPAAEAS---MGHIELAKWADLILLAPATADLIARMA 100
>sp|Q87T89|COABC_VIBPA Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=coaBC PE=3 SV=1
Length = 399
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 20/108 (18%)
Query: 79 ILLCCTGSVATIKLPEL----IEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKP- 133
ILL +G +A K EL IE+ Q+Q VVMTK A F+ L +
Sbjct: 9 ILLGISGGIAAYKCAELTRRLIERGAQVQ------------VVMTKAAKEFITPLTMQAV 56
Query: 134 NIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
+ R SD + E + HIEL+KW D+++LAP A+ +A+++
Sbjct: 57 SGRPVSDSLLDPAAEAS---MGHIELAKWADLVLLAPATADLIARMSA 101
>sp|Q9KVD1|COABC_VIBCH Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=coaBC PE=3 SV=1
Length = 399
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKP-NIRF 137
ILL +G +A K EL ++ + + VVMT A F+ L + + R
Sbjct: 9 ILLGISGGIAAYKCAELTRRLVERGA--------TVQVVMTHAAKEFITPLTMQAVSGRP 60
Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
SD + E + HIEL+KW D+++LAP A+ +A++A
Sbjct: 61 VSDSLLDPAAEAS---MGHIELAKWADLVLLAPATADLIARMA 100
>sp|P44953|COABC_HAEIN Coenzyme A biosynthesis bifunctional protein CoaBC OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=coaBC PE=3 SV=1
Length = 400
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 20/107 (18%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
+I++ TG +A K ELI + + + E + VV+T A FV L
Sbjct: 7 HIVVGITGGIAAYKTIELIRLLRKAEAE--------VRVVLTPAAAEFVTPLT------L 52
Query: 138 YSDDDEWISWEKRGDP-----VLHIELSKWCDIIVLAPLDANTLAKL 179
+ +S + DP + HIEL+KW D I++AP A+ +A+L
Sbjct: 53 QAISGNAVS-QSLLDPQAELAMGHIELAKWADAIIIAPASADFIARL 98
>sp|O51752|COABC_BORBU Coenzyme A biosynthesis bifunctional protein CoaBC OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=coaBC PE=3 SV=1
Length = 390
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
IL+ G +A+ K ++ + +L Y+ + V+MT++A F+ L +
Sbjct: 7 ILIGICGGIASYKSVYIVSSLVKLGYK--------VKVIMTQNATKFITPLTLET----- 53
Query: 139 SDDDEWIS--WEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
++ I+ W+ + V HI+++KW +I++ P NT++K+A+
Sbjct: 54 ISKNKIITNLWDLDHNEVEHIKIAKWAHLILVIPATYNTISKIAS 98
>sp|Q8T8C0|NOS_BOMMO Nitric oxide synthase OS=Bombyx mori GN=NOS PE=2 SV=1
Length = 1209
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 16 PDKGSFPL---DHYGDCKAFMTKYMICIKKNNSDSSACR-DEIKDYLGCRMEKELMAKE- 70
P +G P + + D +AF+T+Y IK+ NS++ R DE+K L R +L E
Sbjct: 108 PGRGDTPRTAEEVFKDAQAFLTQYYASIKRENSEAHKARLDEVKRELKERGTYQLKTSEL 167
Query: 71 -DWEKLEFNILLCCTGSVATIKL 92
KL + C G + KL
Sbjct: 168 VFGAKLAWRNATRCIGRIQWKKL 190
>sp|O66811|PAAD_AQUAE Probable aromatic acid decarboxylase OS=Aquifex aeolicus (strain
VF5) GN=aq_528 PE=1 SV=1
Length = 189
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMT-KHAFHFVPDLPHKPNIRF 137
I LC TG+ I +L++ +E+L + + ++ N VV+ +H+ F L N+R
Sbjct: 4 IALCITGASGVIYGIKLLQVLEELDFSVDLVISRNAKVVLKEEHSLTFEEVLKGLKNVRI 63
Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
+ ++D + S G ++H + + P NTL+ +A
Sbjct: 64 HEEND-FTSPLASGSRLVHYRG------VYVVPCSTNTLSCIA 99
>sp|Q9RC23|MRSD_BACSY Mersacidin decarboxylase OS=Bacillus sp. (strain HIL-Y85/54728)
GN=mrsD PE=1 SV=1
Length = 194
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 114 LNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDA 173
+ VVMTK A +P + Y D + + G H+E+ +W DI + P A
Sbjct: 38 IRVVMTKTAEDLIP-----AHTVSYFCDHVYSEHGENGKRHSHVEIGRWADIYCIIPATA 92
Query: 174 NTLAKLA 180
N L + A
Sbjct: 93 NILGQTA 99
>sp|Q208S3|COX23_PARBR Cytochrome c oxidase-assembly factor COX23, mitochondrial
OS=Paracoccidioides brasiliensis GN=COX23 PE=3 SV=1
Length = 76
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 25 HYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME 63
+Y C+ F + + C+++N +D + C D + Y C+ E
Sbjct: 29 YYDPCQDFADRSIKCMRRNGNDKTMCSDYFQAYRDCKKE 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,990,580
Number of Sequences: 539616
Number of extensions: 2947540
Number of successful extensions: 5879
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5815
Number of HSP's gapped (non-prelim): 53
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)