Query psy7740
Match_columns 184
No_of_seqs 187 out of 1092
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 17:37:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mvl_A PPC decarboxylase athal 99.9 7E-27 2.4E-31 193.9 5.4 99 75-182 18-116 (209)
2 1qzu_A Hypothetical protein MD 99.9 1.9E-26 6.4E-31 190.8 3.3 99 74-182 17-116 (206)
3 1g63_A Epidermin modifying enz 99.9 1.1E-24 3.9E-29 176.9 4.9 89 77-182 3-93 (181)
4 3qjg_A Epidermin biosynthesis 99.9 6.4E-25 2.2E-29 177.6 3.0 90 76-182 5-96 (175)
5 1p3y_1 MRSD protein; flavoprot 99.9 5.8E-25 2E-29 180.3 2.5 92 76-182 8-101 (194)
6 3zqu_A Probable aromatic acid 99.9 1.2E-24 4.2E-29 180.4 3.4 99 76-182 4-114 (209)
7 3lqk_A Dipicolinate synthase s 99.9 6.4E-24 2.2E-28 175.1 3.0 90 75-182 6-106 (201)
8 3mcu_A Dipicolinate synthase, 99.9 2E-23 6.8E-28 172.9 2.6 90 75-182 4-104 (207)
9 2ejb_A Probable aromatic acid 99.9 1.4E-22 4.8E-27 165.5 5.5 88 77-182 2-101 (189)
10 1sbz_A Probable aromatic acid 99.8 9E-22 3.1E-26 161.9 4.1 88 78-182 2-97 (197)
11 1ei0_A P8MTCP1; helix-turn-hel 94.1 0.058 2E-06 32.8 3.7 34 28-61 2-35 (38)
12 1hp8_A HU-P8; leukemia, cystei 92.7 0.086 2.9E-06 36.1 3.1 37 27-63 5-41 (68)
13 2lql_A Coiled-coil-helix-coile 92.6 0.055 1.9E-06 40.3 2.3 36 27-62 59-94 (113)
14 2lql_A Coiled-coil-helix-coile 82.9 0.33 1.1E-05 36.0 0.7 42 22-63 7-50 (113)
15 2lqt_A Coiled-coil-helix-coile 80.4 1.6 5.5E-05 30.9 3.5 37 27-63 14-50 (85)
16 1u96_A Cytochrome C oxidase co 59.0 6.7 0.00023 26.7 2.6 34 28-61 25-58 (69)
17 1u96_A Cytochrome C oxidase co 49.4 18 0.00062 24.5 3.5 21 27-47 45-65 (69)
18 2l48_A N-acetylmuramoyl-L-alan 37.5 11 0.00038 26.6 1.1 37 82-126 22-58 (85)
19 3h4t_A Glycosyltransferase GTF 30.7 31 0.001 29.1 2.9 46 78-131 2-48 (404)
20 1kjn_A MTH0777; hypotethical p 30.2 53 0.0018 25.5 3.9 31 90-128 23-53 (157)
21 3ia7_A CALG4; glycosysltransfe 29.7 39 0.0013 27.5 3.4 43 78-128 6-49 (402)
22 4amg_A Snogd; transferase, pol 29.2 33 0.0011 28.1 2.9 40 78-125 24-64 (400)
23 4b4o_A Epimerase family protei 27.2 36 0.0012 27.0 2.7 29 82-119 4-32 (298)
24 3tsa_A SPNG, NDP-rhamnosyltran 27.2 37 0.0012 27.9 2.8 41 78-126 3-44 (391)
25 3hhf_B Transcriptional regulat 26.8 34 0.0012 24.6 2.3 41 78-124 8-48 (213)
26 4fzr_A SSFS6; structural genom 26.8 36 0.0012 28.1 2.7 44 77-128 16-60 (398)
27 2yjn_A ERYCIII, glycosyltransf 25.3 48 0.0016 28.0 3.2 47 77-131 21-68 (441)
28 2iya_A OLEI, oleandomycin glyc 25.3 56 0.0019 27.2 3.6 43 77-127 13-56 (424)
29 1v54_H AED, cytochrome C oxida 25.2 67 0.0023 22.3 3.4 33 27-59 27-62 (85)
30 1i6a_A OXYR, hydrogen peroxide 25.1 60 0.002 23.7 3.4 35 78-118 6-40 (219)
31 3s2u_A UDP-N-acetylglucosamine 24.8 50 0.0017 27.5 3.3 38 77-122 3-41 (365)
32 1ejp_A Syndecan-4; symmetric-p 24.6 28 0.00095 19.5 1.0 11 16-26 5-15 (28)
33 3rsc_A CALG2; TDP, enediyne, s 24.5 48 0.0016 27.4 3.0 44 77-128 21-65 (415)
34 3ulk_A Ketol-acid reductoisome 24.0 1.1E+02 0.0037 28.0 5.4 62 49-122 9-71 (491)
35 2p6p_A Glycosyl transferase; X 23.3 67 0.0023 26.2 3.7 42 78-127 2-44 (384)
36 2y7p_A LYSR-type regulatory pr 22.9 47 0.0016 24.7 2.5 37 77-119 8-44 (218)
37 3otg_A CALG1; calicheamicin, T 22.4 47 0.0016 27.2 2.6 42 77-126 21-63 (412)
38 1iir_A Glycosyltransferase GTF 21.5 75 0.0026 26.5 3.7 43 78-128 2-45 (415)
39 2ql3_A Probable transcriptiona 20.5 53 0.0018 23.6 2.2 38 78-121 6-43 (209)
40 1dtd_B Metallocarboxypeptidase 20.0 22 0.00074 22.8 -0.0 13 18-30 18-30 (61)
No 1
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=99.93 E-value=7e-27 Score=193.89 Aligned_cols=99 Identities=44% Similarity=0.803 Sum_probs=91.2
Q ss_pred hhhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCCCCCeeeeCCccchhcccCCCCc
Q psy7740 75 LEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPV 154 (184)
Q Consensus 75 LGf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~~~~~V~~d~de~~~~~~~~~~~ 154 (184)
.+++|++|+|||++++|++++++.|++.| +|+||+|++|++|++++.++++.+||++.++|..|.+.++++
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~~g---------~V~vv~T~~A~~fv~~~~~~~~~~v~~d~~~~~~~~~~~~~i 88 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTEWA---------EVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPV 88 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHTTS---------EEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHHCSSTTSCC
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhcCC---------CEEEEEcchHHHhcCHHHhhcCCeEEeCccccccccccCCCc
Confidence 36799999999999999999999999976 999999999999999999887889999987787776667789
Q ss_pred ccccccccccEEEEcccccHHHHHHhcC
Q psy7740 155 LHIELSKWCDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 155 ~Hi~l~~~aD~~VVaPaSaNTlAKiA~~ 182 (184)
.|+++.+|+|+|||||||||||||||+|
T Consensus 89 ~hi~l~~~aD~mvIaPaTanTlAKiA~G 116 (209)
T 1mvl_A 89 LHIELRRWADVLVIAPLSANTLGKIAGG 116 (209)
T ss_dssp HHHHHHHHCSEEEEEEECHHHHHHHHHT
T ss_pred cchhhcccCCEEEEecCCHHHHHHHHcc
Confidence 9999999999999999999999999997
No 2
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=99.92 E-value=1.9e-26 Score=190.81 Aligned_cols=99 Identities=44% Similarity=0.799 Sum_probs=88.0
Q ss_pred hhhhhhhhcCCCchHHhHHHHHHHHHHh-ccccccccccceEEEEcCchHHHhcCcCCCCCCCeeeeCCccchhcccCCC
Q psy7740 74 KLEFNILLCCTGSVATIKLPELIEQIEQ-LQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGD 152 (184)
Q Consensus 74 ~LGf~illg~tGSiaa~k~~~li~~L~~-~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~~~~~V~~d~de~~~~~~~~~ 152 (184)
..+++|++|+|||++++|++++++.|++ .| + +|+||+|++|++|++++.++ .+||+|.|+|..|.+.+.
T Consensus 17 l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g--~------~V~vv~T~~A~~fi~~~~~~--~~v~~d~d~~~~~~~~~~ 86 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALKLPLLVSKLLDIPG--L------EVAVVTTERAKHFYSPQDIP--VTLYSDADEWEMWKSRSD 86 (206)
T ss_dssp CSSEEEEEEECSSGGGGTHHHHHHHHC---C--E------EEEEEECTGGGGSSCGGGSC--SCEECHHHHHHTCSSTTS
T ss_pred cCCCEEEEEEeChHHHHHHHHHHHHHhcccC--C------EEEEEECHhHHHHhCHHHcC--ceEEecCcccccccCCCC
Confidence 3467999999999999999999999998 77 7 99999999999999999875 589998888877765556
Q ss_pred CcccccccccccEEEEcccccHHHHHHhcC
Q psy7740 153 PVLHIELSKWCDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 153 ~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~ 182 (184)
++.||+|++|+|+|||||||||||||||+|
T Consensus 87 ~~~Hi~l~~~aD~~vIaPaTanTlAKiA~G 116 (206)
T 1qzu_A 87 PVLHIDLRRWADLLLVAPLDANTLGKVASG 116 (206)
T ss_dssp CCHHHHHHTTCSEEEEEEECHHHHHHHHTT
T ss_pred ccchhhcccccCEEEEecCCHHHHHHHHcc
Confidence 789999999999999999999999999997
No 3
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=99.90 E-value=1.1e-24 Score=176.88 Aligned_cols=89 Identities=24% Similarity=0.310 Sum_probs=79.4
Q ss_pred hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCCc
Q psy7740 77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDPV 154 (184)
Q Consensus 77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~~ 154 (184)
+||++|+|||++++|++++++.|++.| + +|+||+|++|++|++++.++ +++ ++| .|..| ++
T Consensus 3 k~IllgvTGs~aa~k~~~l~~~L~~~g--~------~V~vv~T~~A~~fi~~~~l~~l~~~--~~d--~~~~~-----~~ 65 (181)
T 1g63_A 3 GKLLICATASINVININHYIVELKQHF--D------EVNILFSPSSKNFINTDVLKLFCDN--LYD--EIKDP-----LL 65 (181)
T ss_dssp CCEEEEECSCGGGGGHHHHHHHHTTTS--S------CEEEEECGGGGGTSCGGGGGGTSSC--EEC--TTTCT-----TC
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCC--C------EEEEEEchhHHHHHHHHHHHHHhCC--ccc--ccCCC-----CC
Confidence 589999999999999999999999988 7 99999999999999999887 455 555 34322 58
Q ss_pred ccccccccccEEEEcccccHHHHHHhcC
Q psy7740 155 LHIELSKWCDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 155 ~Hi~l~~~aD~~VVaPaSaNTlAKiA~~ 182 (184)
+|+++++|+|+|||||||+|||||||+|
T Consensus 66 ~hi~l~~~aD~~vIaPaTantlAKiA~G 93 (181)
T 1g63_A 66 NHINIVENHEYILVLPASANTINKIANG 93 (181)
T ss_dssp CHHHHHHTCSEEEEEEECHHHHHHHHTT
T ss_pred ccccccccCCEEEEecCCHHHHHHHHcc
Confidence 9999999999999999999999999997
No 4
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=99.90 E-value=6.4e-25 Score=177.64 Aligned_cols=90 Identities=23% Similarity=0.404 Sum_probs=81.3
Q ss_pred hhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCC
Q psy7740 76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDP 153 (184)
Q Consensus 76 Gf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~ 153 (184)
++||++|+|||++++|++++++.|++.| + +|+|++|++|++|++++.++ ++ +||+|.+ +..
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~~g--~------~V~vv~T~~A~~fi~~~~l~~l~~-~v~~~~~--------~~~ 67 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKSKF--D------EVNVIASTNGRKFINGEILKQFCD-NYYDEFE--------DPF 67 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTTTC--S------EEEEEECTGGGGGSCHHHHHHHCS-CEECTTT--------CTT
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCC--C------EEEEEECcCHHHHhhHHHHHHhcC-CEEecCC--------CCc
Confidence 4689999999999999999999999988 8 99999999999999999876 56 8988742 123
Q ss_pred cccccccccccEEEEcccccHHHHHHhcC
Q psy7740 154 VLHIELSKWCDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 154 ~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~ 182 (184)
++|+++++|+|+|||||||+|||||||+|
T Consensus 68 ~~hi~l~~~aD~~vVaPaTanTlakiA~G 96 (175)
T 3qjg_A 68 LNHVDIANKHDKIIILPATSNTINKIANG 96 (175)
T ss_dssp CCHHHHHHTCSEEEEEEECHHHHHHHHTT
T ss_pred cccccccchhCEEEEeeCCHHHHHHHHcc
Confidence 78999999999999999999999999997
No 5
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=99.90 E-value=5.8e-25 Score=180.35 Aligned_cols=92 Identities=24% Similarity=0.384 Sum_probs=82.1
Q ss_pred hhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCC
Q psy7740 76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDP 153 (184)
Q Consensus 76 Gf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~ 153 (184)
|++|++|+|||++++|++++++.|++.| + +|+||+|++|++|++++.++ +++ ||+| .|..+ .+
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~~g--~------~V~vv~T~~A~~fi~~~~~~~l~~~-v~~~--~~~~~----~~ 72 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKSFF--K------EIRVVMTKTAEDLIPAHTVSYFCDH-VYSE--HGENG----KR 72 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTTTS--S------EEEEEECHHHHHHSCHHHHGGGSSE-EECT--TCSSS----CC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHCC--C------EEEEEEchhHHHHHHHHHHHHhcCC-Eecc--ccccC----CC
Confidence 6799999999999999999999999987 7 99999999999999999876 455 8877 34321 26
Q ss_pred cccccccccccEEEEcccccHHHHHHhcC
Q psy7740 154 VLHIELSKWCDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 154 ~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~ 182 (184)
++|+++.+|+|+|||||||||||||||+|
T Consensus 73 ~~hi~l~~~aD~~vIaPaTanTlAKiA~G 101 (194)
T 1p3y_1 73 HSHVEIGRWADIYCIIPATANILGQTANG 101 (194)
T ss_dssp CCHHHHHHHCSEEEEEEECHHHHHHHHTT
T ss_pred cCcccccccCCEEEEeCCCHHHHHHHHhh
Confidence 89999999999999999999999999997
No 6
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=99.89 E-value=1.2e-24 Score=180.44 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=83.5
Q ss_pred hhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCee-----eeCCccch---
Q psy7740 76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRF-----YSDDDEWI--- 145 (184)
Q Consensus 76 Gf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V-----~~d~de~~--- 145 (184)
+++|++|+|||+|++|++++++.|++.| + +|+||+|++|++|++++.+. +++++ ++|..++.
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~~g--~------eV~vv~T~~A~~fi~~et~~~ls~~~v~~~~~~~~~~~~~~~~ 75 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQEE--R------EVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQ 75 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHTT--C------EEEEEECHHHHHHHHHHCSCCCCSSHHHHHHHHHHHHTCCTTT
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHCC--C------EEEEEECccHHHHHHHHhCCcccCCccchhhhhhhhhhccccc
Confidence 3689999999999999999999999998 8 99999999999999999876 57777 55432210
Q ss_pred -hcccCCCCccccccccc-ccEEEEcccccHHHHHHhcC
Q psy7740 146 -SWEKRGDPVLHIELSKW-CDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 146 -~~~~~~~~~~Hi~l~~~-aD~~VVaPaSaNTlAKiA~~ 182 (184)
.|...++..+||++++| +|+|||||||||||||||+|
T Consensus 76 ~~~~~~~d~~~hI~~~~~~aD~mvIaPaSanTlakiA~G 114 (209)
T 3zqu_A 76 IRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATG 114 (209)
T ss_dssp EEECCTTCTTSGGGCTTSCCCEEEEEEECHHHHHHHHHT
T ss_pred ceecccccccCCccccCcccCEEEEeeCCHhHHHHHHcc
Confidence 12233456889999999 99999999999999999997
No 7
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=99.88 E-value=6.4e-24 Score=175.07 Aligned_cols=90 Identities=17% Similarity=0.119 Sum_probs=79.8
Q ss_pred hhhhhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcC--------CCC--CCCeeeeCCcc
Q psy7740 75 LEFNILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDL--------PHK--PNIRFYSDDDE 143 (184)
Q Consensus 75 LGf~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~--------~l~--~~~~V~~d~de 143 (184)
.|+||++|+|||++++ |++++++.|++.| + +|+||+|++|++|++++ .++ ++++|+++.
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g--~------eV~vv~T~~A~~~i~~~~~~~~~~~~l~~l~g~~v~~~~-- 75 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVELG--A------KVTPFVTHTVQTTDTKFGESSEWINKIKQITEEPIVDSM-- 75 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHTT--C------EEEEECSSCSCCTTCCTTCSCHHHHHHHHHCCSCCBCSH--
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhCC--C------EEEEEEChhHHHHHHHhhchhHHHHHHHHHhCCCeEeec--
Confidence 4679999999999999 9999999999998 8 99999999999999998 443 567777662
Q ss_pred chhcccCCCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740 144 WISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 144 ~~~~~~~~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~ 182 (184)
| ..+||++++|+|+|||||||||||||||+|
T Consensus 76 ~--------~~~hi~~s~~aD~mvIaP~TanTlAkiA~G 106 (201)
T 3lqk_A 76 V--------KAEPFGPKTPLDCMVIAPMTGNSTSKFANA 106 (201)
T ss_dssp H--------HHGGGTTTSCCSEEEEEEECHHHHHHHHTT
T ss_pred C--------cccccccccccCEEEEccCCHHHHHHHHCc
Confidence 2 257999999999999999999999999997
No 8
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=99.87 E-value=2e-23 Score=172.94 Aligned_cols=90 Identities=18% Similarity=0.118 Sum_probs=71.8
Q ss_pred hhhhhhhcCCCchHHhH-HHHHHHHHHhccccccccccceEEEEcCchHH----HhcCc----CCCC--CCCeeeeCCcc
Q psy7740 75 LEFNILLCCTGSVATIK-LPELIEQIEQLQYEFNKIMIINLNVVMTKHAF----HFVPD----LPHK--PNIRFYSDDDE 143 (184)
Q Consensus 75 LGf~illg~tGSiaa~k-~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~----~fv~~----~~l~--~~~~V~~d~de 143 (184)
.|++|++|+|||+++|| ++++++.|++.| + +|+||+|++|+ +|+++ ..++ ++.+|++|.
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~g--~------eV~vv~T~~A~~vl~~f~~~~~~~~~l~~ltg~~v~~~~-- 73 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAEG--A------EVRPVVSYTVQSTNTRFGEGAEWIKKIEEITGFKAINSI-- 73 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHHTT--C------EEEEEECC------------CHHHHHHHHHSSSCCBCSH--
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHhCC--C------EEEEEEehHHHHHHHHhcCchhHHHHHHHHhCCceEeec--
Confidence 35799999999999998 999999999998 8 99999999999 77777 3444 678888662
Q ss_pred chhcccCCCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740 144 WISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 144 ~~~~~~~~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~ 182 (184)
| ..+|+++++|+|+|||||||||||||||+|
T Consensus 74 ~--------~~~hi~ls~~aD~mvIaPaTanTlAKiA~G 104 (207)
T 3mcu_A 74 V--------GAEPLGPKIPLDCMVIAPLTGNSMSKFANA 104 (207)
T ss_dssp H--------HHGGGTTTSCCSEEEEEEECHHHHHHHHTT
T ss_pred C--------cccccccchhcCEEEEecCCHHHHHHHHcc
Confidence 2 146999999999999999999999999997
No 9
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=99.86 E-value=1.4e-22 Score=165.49 Aligned_cols=88 Identities=23% Similarity=0.349 Sum_probs=74.8
Q ss_pred hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCC---CC------CCCeeeeCCccchhc
Q psy7740 77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLP---HK------PNIRFYSDDDEWISW 147 (184)
Q Consensus 77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~---l~------~~~~V~~d~de~~~~ 147 (184)
+||++|+|||+|++|++++++.|++.| + +|+||+|++|++|++++. ++ ++.+||++.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~g--~------~V~vv~T~~A~~~i~~e~~~~~~~l~~~l~~~~v~~~~------ 67 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEELD--F------SVDLVISRNAKVVLKEEHSLTFEEVLKGLKNVRIHEEN------ 67 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHTT--C------EEEEEECHHHHHHHHHC-------CCCCCSSEEEEETT------
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCC--C------EEEEEEChhHHHHhhHHhCCCHHHHHHHhCCCeEecCC------
Confidence 479999999999999999999999988 7 999999999999999952 22 134555442
Q ss_pred ccCCCCccccccc---ccccEEEEcccccHHHHHHhcC
Q psy7740 148 EKRGDPVLHIELS---KWCDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 148 ~~~~~~~~Hi~l~---~~aD~~VVaPaSaNTlAKiA~~ 182 (184)
+..+||+++ +|+|+|||||||||||||||+|
T Consensus 68 ----~~~~hi~~~s~~~~aD~mvIaPaTanTlAkiA~G 101 (189)
T 2ejb_A 68 ----DFTSPLASGSRLVHYRGVYVVPCSTNTLSCIANG 101 (189)
T ss_dssp ----CTTSGGGCHHHHTTEEEEEEEEECHHHHHHHHHT
T ss_pred ----CCcCCccccccccccCEEEEecCCHHHHHHHHcC
Confidence 346899998 9999999999999999999997
No 10
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=99.83 E-value=9e-22 Score=161.88 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=71.8
Q ss_pred hhhhcCCCchHHhHHHHHHHHHHhc-cccccccccceEEEEcCchHHHhcCcCC------CC-CCCeeeeCCccchhccc
Q psy7740 78 NILLCCTGSVATIKLPELIEQIEQL-QYEFNKIMIINLNVVMTKHAFHFVPDLP------HK-PNIRFYSDDDEWISWEK 149 (184)
Q Consensus 78 ~illg~tGSiaa~k~~~li~~L~~~-g~~~~~~~~~~V~VilT~sA~~fv~~~~------l~-~~~~V~~d~de~~~~~~ 149 (184)
||++|+|||+|++|++++++.|++. | + +|+||+|++|++|++++. +. ....++... +|
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~L~~~~g--~------~V~vv~T~~A~~fi~~~tg~~v~~~~~l~~~~~~~~-~l----- 67 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALREMPN--V------ETHLVMSKWAKTTIELETPYSARDVAALADFSHNPA-DQ----- 67 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTCTT--C------EEEEEECHHHHHHHHHHSSCCHHHHHHTSSEEECTT-CT-----
T ss_pred EEEEEEeChHHHHHHHHHHHHHHhccC--C------EEEEEECchHHHHhHHHHCCCHHHHHHhcCcccCch-hh-----
Confidence 7899999999999999999999998 7 7 999999999999999874 11 112233222 22
Q ss_pred CCCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740 150 RGDPVLHIELSKWCDIIVLAPLDANTLAKLATY 182 (184)
Q Consensus 150 ~~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~ 182 (184)
++++.|++ +|+|+|||||||||||||||+|
T Consensus 68 -~api~sgs--~~aD~mvIaPaTanTlAkiA~G 97 (197)
T 1sbz_A 68 -AATISSGS--FRTDGMIVIPCSMKTLAGIRAG 97 (197)
T ss_dssp -TSGGGSTT--SCCSEEEEEEECHHHHHHHHHT
T ss_pred -cccccCCC--cccCEEEEecCCHhHHHHHHcc
Confidence 45666664 7999999999999999999997
No 11
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=94.11 E-value=0.058 Score=32.77 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhcc
Q psy7740 28 DCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61 (184)
Q Consensus 28 ~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~cr 61 (184)
-|+.....+..||.+|+++.++|......|=+|-
T Consensus 2 pC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp CSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999988773
No 12
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=92.72 E-value=0.086 Score=36.08 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=34.4
Q ss_pred CccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccch
Q psy7740 27 GDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME 63 (184)
Q Consensus 27 ~~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm~ 63 (184)
.-|+.+.-.+..||.+|+++.++|.....+|=+|+-.
T Consensus 5 dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~ 41 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQ 41 (68)
T ss_dssp CTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999863
No 13
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=92.63 E-value=0.055 Score=40.30 Aligned_cols=36 Identities=17% Similarity=0.614 Sum_probs=33.3
Q ss_pred CccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccc
Q psy7740 27 GDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRM 62 (184)
Q Consensus 27 ~~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm 62 (184)
..|.+.+..|-.||+.|+.+-..||.+-+++..|-=
T Consensus 59 ~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae 94 (113)
T 2lql_A 59 QACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAE 94 (113)
T ss_dssp HHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 469999999999999999988999999999999973
No 14
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=82.89 E-value=0.33 Score=36.03 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=31.1
Q ss_pred CCCCCCc-cHHHHHHHHHHHhhcCC-CChhhHHHhhhhhhccch
Q psy7740 22 PLDHYGD-CKAFMTKYMICIKKNNS-DSSACRDEIKDYLGCRME 63 (184)
Q Consensus 22 pldh~~~-c~~~~~~y~~cl~~~~~-~~~~cr~~~k~yl~crm~ 63 (184)
-++|-+- |...+..||.|..+|+. +..+|..+.++--.|-.+
T Consensus 7 a~~~vak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~ 50 (113)
T 2lql_A 7 ALEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSS 50 (113)
T ss_dssp -------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHT
T ss_pred HHHHHHHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhc
Confidence 3567774 99999999999998875 578999999999999755
No 15
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=80.39 E-value=1.6 Score=30.92 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=33.9
Q ss_pred CccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccch
Q psy7740 27 GDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME 63 (184)
Q Consensus 27 ~~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm~ 63 (184)
.-|.+.-..-++||.+|+.+-++|-+.=.+|=.|+=.
T Consensus 14 nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk~ 50 (85)
T 2lqt_A 14 NPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRF 50 (85)
T ss_dssp CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999999999643
No 16
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=58.95 E-value=6.7 Score=26.67 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhcc
Q psy7740 28 DCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61 (184)
Q Consensus 28 ~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~cr 61 (184)
-|...+..-=.|+=.++.++.+|..+..+|.+|-
T Consensus 25 aCpetK~aRDeCil~~gee~~~C~~lIeahk~CM 58 (69)
T 1u96_A 25 VCKPEKEERDTCILFNGQDSEKCKEFIEKYKECM 58 (69)
T ss_dssp TSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHHH
T ss_pred eCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 4666777777777777766667777777777663
No 17
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=49.41 E-value=18 Score=24.51 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=18.8
Q ss_pred CccHHHHHHHHHHHhhcCCCC
Q psy7740 27 GDCKAFMTKYMICIKKNNSDS 47 (184)
Q Consensus 27 ~~c~~~~~~y~~cl~~~~~~~ 47 (184)
+.|++++..|-.|||.-+++.
T Consensus 45 ~~C~~lIeahk~CMr~~GF~v 65 (69)
T 1u96_A 45 EKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp GGGHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999988764
No 18
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=37.50 E-value=11 Score=26.56 Aligned_cols=37 Identities=8% Similarity=0.408 Sum_probs=30.0
Q ss_pred cCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhc
Q psy7740 82 CCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFV 126 (184)
Q Consensus 82 g~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv 126 (184)
..||+.+...+++++..|.+.+ . .-++++-+.|..++
T Consensus 22 V~TGgfg~~~v~ev~~am~~~g--~------~gkii~~~dGl~y~ 58 (85)
T 2l48_A 22 IQSGAFSPYETPDVMGALTSLK--M------TADFILQSDGLTYF 58 (85)
T ss_dssp EEECCBCTTTHHHHHHHHHHTT--C------CEEEEECTTSCEEE
T ss_pred EEecccCHHHHHHHHHHHHHcC--c------eEEEEECCCceEEE
Confidence 4799999999999999999998 6 67777666555554
No 19
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=30.68 E-value=31 Score=29.06 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=33.5
Q ss_pred hhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCC
Q psy7740 78 NILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPH 131 (184)
Q Consensus 78 ~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l 131 (184)
||++...|+.+-+ ....+.+.|++.| + +|.|+.++....++....+
T Consensus 2 rIli~~~gt~Ghv~p~~~La~~L~~~G--h------~V~v~~~~~~~~~v~~~g~ 48 (404)
T 3h4t_A 2 GVLITGCGSRGDTEPLVALAARLRELG--A------DARMCLPPDYVERCAEVGV 48 (404)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHTT--C------CEEEEECGGGHHHHHHTTC
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHCC--C------eEEEEeCHHHHHHHHHcCC
Confidence 4555555665544 4788999999999 8 9999998877777655444
No 20
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=30.15 E-value=53 Score=25.55 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCc
Q psy7740 90 IKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPD 128 (184)
Q Consensus 90 ~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~ 128 (184)
..+..+...|++.| + +|.|.-||+|.+.+.-
T Consensus 23 p~~lYl~~~Lk~~G--~------~v~VA~npAAlkLlev 53 (157)
T 1kjn_A 23 PLAIYTSHKLKKKG--F------RVTVTANPAALRLVQV 53 (157)
T ss_dssp HHHHHHHHHHHHTT--C------EEEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC--C------eeEEecCHHHHhheec
Confidence 34788899999999 8 9999999999988653
No 21
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=29.74 E-value=39 Score=27.55 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=31.3
Q ss_pred hhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhcCc
Q psy7740 78 NILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPD 128 (184)
Q Consensus 78 ~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~ 128 (184)
||++...|+.+-+ ....+.+.|++.| + +|.++.++.....+..
T Consensus 6 ~il~~~~~~~Ghv~~~~~La~~L~~~G--h------eV~v~~~~~~~~~~~~ 49 (402)
T 3ia7_A 6 HILFANVQGHGHVYPSLGLVSELARRG--H------RITYVTTPLFADEVKA 49 (402)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHTT--C------EEEEEECHHHHHHHHH
T ss_pred EEEEEeCCCCcccccHHHHHHHHHhCC--C------EEEEEcCHHHHHHHHH
Confidence 6766666654444 5788999999998 8 9999998766555543
No 22
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=29.16 E-value=33 Score=28.09 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=30.4
Q ss_pred hhhhcCCCchHHhH-HHHHHHHHHhccccccccccceEEEEcCchHHHh
Q psy7740 78 NILLCCTGSVATIK-LPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHF 125 (184)
Q Consensus 78 ~illg~tGSiaa~k-~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~f 125 (184)
|||+...|+.|=+. ...+.+.|+++| + +|+++.++.....
T Consensus 24 RIL~~~~p~~GHv~P~l~LA~~L~~rG--h------~Vt~~t~~~~~~~ 64 (400)
T 4amg_A 24 RALFITSPGLSHILPTVPLAQALRALG--H------EVRYATGGDIRAV 64 (400)
T ss_dssp EEEEECCSSHHHHGGGHHHHHHHHHTT--C------EEEEEECSSTHHH
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHCC--C------EEEEEeCcchhhH
Confidence 78887666655443 888999999999 8 9999887654443
No 23
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=27.20 E-value=36 Score=27.02 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=20.7
Q ss_pred cCCCchHHhHHHHHHHHHHhccccccccccceEEEEcC
Q psy7740 82 CCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMT 119 (184)
Q Consensus 82 g~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT 119 (184)
-|||+.|. -.-.+++.|.+.| + +|+++..
T Consensus 4 LVTGatGf-IG~~L~~~L~~~G--~------~V~~l~R 32 (298)
T 4b4o_A 4 LVGGGTGF-IGTALTQLLNARG--H------EVTLVSR 32 (298)
T ss_dssp EEETTTSH-HHHHHHHHHHHTT--C------EEEEEES
T ss_pred EEECCCCH-HHHHHHHHHHHCC--C------EEEEEEC
Confidence 36777553 3567888999998 7 8887643
No 24
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=27.19 E-value=37 Score=27.87 Aligned_cols=41 Identities=5% Similarity=-0.017 Sum_probs=29.1
Q ss_pred hhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhc
Q psy7740 78 NILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFV 126 (184)
Q Consensus 78 ~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv 126 (184)
||++.+.|+.+-+ .+..+++.|++.| + +|.|+.++.....+
T Consensus 3 rIl~~~~~~~gh~~~~~~la~~L~~~G--h------eV~v~~~~~~~~~~ 44 (391)
T 3tsa_A 3 RVLVVPLPYPTHLMAMVPLCWALQASG--H------EVLIAAPPELQATA 44 (391)
T ss_dssp EEEEECCSCHHHHHTTHHHHHHHHHTT--C------EEEEEECHHHHHHH
T ss_pred EEEEEcCCCcchhhhHHHHHHHHHHCC--C------EEEEecChhhHHHH
Confidence 5666665554444 4677999999998 7 99998876654443
No 25
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=26.84 E-value=34 Score=24.59 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=31.5
Q ss_pred hhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHH
Q psy7740 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFH 124 (184)
Q Consensus 78 ~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~ 124 (184)
++-+|++.+++...++.++..+.+..++. +|++..+.....
T Consensus 8 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v------~l~i~~~~~~~~ 48 (213)
T 3hhf_B 8 VLSVDSAMPMVLHLLAPLAAKFNERYPHI------RLSLVSSEGYIN 48 (213)
T ss_dssp EEEEEECHHHHHHTHHHHHHHHHHHCTTE------EEEEECCSTTHH
T ss_pred eEEEecCHHHHHHHHHHHHHHHHHHCCCc------EEEEEeCCcHHH
Confidence 56778888888889999999999876556 777775554444
No 26
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=26.81 E-value=36 Score=28.12 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=30.9
Q ss_pred hhhhhcCCCchHH-hHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCc
Q psy7740 77 FNILLCCTGSVAT-IKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPD 128 (184)
Q Consensus 77 f~illg~tGSiaa-~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~ 128 (184)
.||++...|+.+- .....+++.|++.| + +|.|+.++.....+..
T Consensus 16 MrIl~~~~~~~gh~~~~~~La~~L~~~G--h------eV~v~~~~~~~~~~~~ 60 (398)
T 4fzr_A 16 MRILVIAGCSEGFVMPLVPLSWALRAAG--H------EVLVAASENMGPTVTG 60 (398)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTT--C------EEEEEEEGGGHHHHHH
T ss_pred eEEEEEcCCCcchHHHHHHHHHHHHHCC--C------EEEEEcCHHHHHHHHh
Confidence 4777665555444 34778999999999 7 9999887665544443
No 27
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=25.34 E-value=48 Score=28.03 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=33.8
Q ss_pred hhhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCC
Q psy7740 77 FNILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPH 131 (184)
Q Consensus 77 f~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l 131 (184)
.||++...|+.+=+ -...+.+.|++.| + +|.++.++.....+....+
T Consensus 21 mrIl~~~~~~~GHv~p~l~la~~L~~~G--h------eV~~~~~~~~~~~v~~~G~ 68 (441)
T 2yjn_A 21 MRVVFSSMASKSHLFGLVPLAWAFRAAG--H------EVRVVASPALTEDITAAGL 68 (441)
T ss_dssp CEEEEECCSCHHHHTTTHHHHHHHHHTT--C------EEEEEECGGGHHHHHTTTC
T ss_pred cEEEEEcCCCcchHhHHHHHHHHHHHCC--C------eEEEEeCchhHHHHHhCCC
Confidence 46777755554433 4788999999998 8 9999998876666554433
No 28
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=25.32 E-value=56 Score=27.23 Aligned_cols=43 Identities=7% Similarity=0.021 Sum_probs=30.6
Q ss_pred hhhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhcC
Q psy7740 77 FNILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVP 127 (184)
Q Consensus 77 f~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~ 127 (184)
.||++...|+-|=+ -...+.+.|++.| + +|.++.++.....+.
T Consensus 13 ~~Il~~~~~~~GHv~p~l~la~~L~~~G--h------~V~~~~~~~~~~~~~ 56 (424)
T 2iya_A 13 RHISFFNIPGHGHVNPSLGIVQELVARG--H------RVSYAITDEFAAQVK 56 (424)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTT--C------EEEEEECGGGHHHHH
T ss_pred ceEEEEeCCCCcccchHHHHHHHHHHCC--C------eEEEEeCHHHHHHHH
Confidence 36777555544433 3788999999998 8 999999887655443
No 29
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=25.20 E-value=67 Score=22.27 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=27.5
Q ss_pred CccHHHHHHHHHHHhh---cCCCChhhHHHhhhhhh
Q psy7740 27 GDCKAFMTKYMICIKK---NNSDSSACRDEIKDYLG 59 (184)
Q Consensus 27 ~~c~~~~~~y~~cl~~---~~~~~~~cr~~~k~yl~ 59 (184)
-.|=.--..|-.|++. ++.+.+.|..+-+.|-+
T Consensus 27 k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~s 62 (85)
T 1v54_H 27 RNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKS 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 4587888899999665 88899999999999853
No 30
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=25.05 E-value=60 Score=23.75 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=27.1
Q ss_pred hhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEc
Q psy7740 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVM 118 (184)
Q Consensus 78 ~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~Vil 118 (184)
++-+|++.+.+...++.++..+++..++. +|++..
T Consensus 6 ~lrIg~~~~~~~~~l~~~l~~f~~~~P~v------~l~l~~ 40 (219)
T 1i6a_A 6 PLHIGLIPTVGPYLLPHIIPMLHQTFPKL------EMYLHE 40 (219)
T ss_dssp EEEEEECTTTHHHHHHHHHHHHHHHCTTE------EEEEEE
T ss_pred EEEEEeccchhhhhhhHHHHHHHHHCCCe------EEEEEE
Confidence 46678889999999999999999876544 555553
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=24.83 E-value=50 Score=27.53 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=26.2
Q ss_pred hhhhhcCCCchH-HhHHHHHHHHHHhccccccccccceEEEEcCchH
Q psy7740 77 FNILLCCTGSVA-TIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHA 122 (184)
Q Consensus 77 f~illg~tGSia-a~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA 122 (184)
.||++...|..| .+-+.-+.++|++.| + +|..+-|+.+
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g--~------~V~~vg~~~g 41 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG--Y------AVHWLGTPRG 41 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT--C------EEEEEECSSS
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC--C------EEEEEECCch
Confidence 467765444322 233777899999998 7 9998877665
No 32
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=24.65 E-value=28 Score=19.49 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=9.0
Q ss_pred CCCCCCCCCCC
Q psy7740 16 PDKGSFPLDHY 26 (184)
Q Consensus 16 p~~g~fpldh~ 26 (184)
-|-||+.||.-
T Consensus 5 KDEGSY~Lde~ 15 (28)
T 1ejp_A 5 KDEGSYDLGKK 15 (28)
T ss_dssp CCCCCCCCCSC
T ss_pred ccccccccCCC
Confidence 47899999964
No 33
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=24.46 E-value=48 Score=27.39 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=32.6
Q ss_pred hhhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhcCc
Q psy7740 77 FNILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPD 128 (184)
Q Consensus 77 f~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~ 128 (184)
.||++...|+.+=+ ....+++.|++.| + +|.++.++.....+..
T Consensus 21 ~rIl~~~~~~~GHv~p~l~La~~L~~~G--h------~V~v~~~~~~~~~~~~ 65 (415)
T 3rsc_A 21 AHLLIVNVASHGLILPTLTVVTELVRRG--H------RVSYVTAGGFAEPVRA 65 (415)
T ss_dssp CEEEEECCSCHHHHGGGHHHHHHHHHTT--C------EEEEEECGGGHHHHHH
T ss_pred CEEEEEeCCCccccccHHHHHHHHHHCC--C------EEEEEeCHHHHHHHHh
Confidence 46777666655544 5888999999998 8 9999998776655543
No 34
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*
Probab=23.99 E-value=1.1e+02 Score=27.96 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=39.7
Q ss_pred hhHHHhhhhhhcc-chhhhhhhhhhhhhhhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchH
Q psy7740 49 ACRDEIKDYLGCR-MEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHA 122 (184)
Q Consensus 49 ~cr~~~k~yl~cr-m~~~Lm~k~~~~~LGf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA 122 (184)
.=|..-...-.|| |+++-..+.--...|++|.+.--||-+- -....|+..| + +|.|-+-+.+
T Consensus 9 ~~~~~~~~~~~c~~m~~~eF~~~~~~lkgK~IaVIGyGsQG~----AqAlNLRDSG--v------~V~Vglr~~s 71 (491)
T 3ulk_A 9 NLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGL----NQGLNMRDSG--L------DISYALRKEA 71 (491)
T ss_dssp CHHHHHHHHTCCEECCGGGGTTTTGGGTTSEEEEESCSHHHH----HHHHHHHHTT--C------EEEEEECHHH
T ss_pred cHHHHHHHhccceeccHHHhcchhHHHcCCEEEEeCCChHhH----HHHhHHHhcC--C------cEEEEeCCCC
Confidence 4466666677888 7766444433334467776665677553 4456788888 7 8998887544
No 35
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=23.35 E-value=67 Score=26.20 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=27.8
Q ss_pred hhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhcC
Q psy7740 78 NILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVP 127 (184)
Q Consensus 78 ~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~ 127 (184)
||++...|+.+-+ -+..+.+.|++.| + +|.++.++....++.
T Consensus 2 rIl~~~~~~~Gh~~p~~~la~~L~~~G--h------~V~~~~~~~~~~~~~ 44 (384)
T 2p6p_A 2 RILFVAAGSPATVFALAPLATAARNAG--H------QVVMAANQDMGPVVT 44 (384)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHTT--C------EEEEEECGGGHHHHH
T ss_pred EEEEEeCCccchHhHHHHHHHHHHHCC--C------EEEEEeCHHHHHHHH
Confidence 4555444443333 4678999999988 7 999998876554443
No 36
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=22.94 E-value=47 Score=24.67 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=28.5
Q ss_pred hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcC
Q psy7740 77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMT 119 (184)
Q Consensus 77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT 119 (184)
.++-+|++.+++...++.++..+++..|+. +|++...
T Consensus 8 g~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v------~l~l~~~ 44 (218)
T 2y7p_A 8 RTFNLAMTDIGEMYFMPPLMEALAQRAPHI------QISTLRP 44 (218)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHHHHCTTC------EEEEECC
T ss_pred eEEEEEecHHHHHHHHHHHHHHHHHHCCCC------EEEEEeC
Confidence 356678888888888999999999886655 6666543
No 37
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=22.39 E-value=47 Score=27.25 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=29.4
Q ss_pred hhhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhc
Q psy7740 77 FNILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFV 126 (184)
Q Consensus 77 f~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv 126 (184)
.||++...|+.+-. .+..+++.|++.| + +|.|+.++.....+
T Consensus 21 MrIl~~~~~~~Gh~~~~~~la~~L~~~G--h------eV~v~~~~~~~~~~ 63 (412)
T 3otg_A 21 MRVLFASLGTHGHTYPLLPLATAARAAG--H------EVTFATGEGFAGTL 63 (412)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTT--C------EEEEEECGGGHHHH
T ss_pred eEEEEEcCCCcccHHHHHHHHHHHHHCC--C------EEEEEccHHHHHHH
Confidence 36766655554444 4678999999998 7 99999886544333
No 38
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=21.52 E-value=75 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=29.7
Q ss_pred hhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhcCc
Q psy7740 78 NILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPD 128 (184)
Q Consensus 78 ~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~ 128 (184)
||++...|+.|=+ -...+.+.|++.| + +|.++.|+.....+..
T Consensus 2 ~Il~~~~~~~GHv~P~l~la~~L~~~G--h------~V~~~~~~~~~~~v~~ 45 (415)
T 1iir_A 2 RVLLATCGSRGDTEPLVALAVRVRDLG--A------DVRMCAPPDCAERLAE 45 (415)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHHTT--C------EEEEEECGGGHHHHHH
T ss_pred eEEEEcCCCchhHHHHHHHHHHHHHCC--C------eEEEEcCHHHHHHHHH
Confidence 4555544443333 4788999999998 8 9999999875555543
No 39
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=20.48 E-value=53 Score=23.64 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=28.6
Q ss_pred hhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCch
Q psy7740 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKH 121 (184)
Q Consensus 78 ~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~s 121 (184)
++-+|++.+++...++.++..+++..++. +|++....+
T Consensus 6 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i------~i~l~~~~~ 43 (209)
T 2ql3_A 6 PIAVGCYPALGPTILPSMLYAFTAEYPRA------SVEFREDTQ 43 (209)
T ss_dssp EEEEEECGGGTTTTHHHHHHHHHHHCTTE------EEEEEECCH
T ss_pred eEEEeechhhhhhhHHHHHHHHHHHCCCc------eEEEEECcH
Confidence 45678888888888999999999876545 666665444
No 40
>1dtd_B Metallocarboxypeptidase inhibitor; carboxypeptidase A2, leech carboxypeptidase inhibitor, hydrolase/hydrolase inhibitor complex; HET: GLU; 1.65A {Hirudo medicinalis} SCOP: g.30.1.1 PDB: 1dtv_A 1zfi_A 1zfl_A 2abz_C
Probab=20.01 E-value=22 Score=22.79 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=11.5
Q ss_pred CCCCCCCCCCccH
Q psy7740 18 KGSFPLDHYGDCK 30 (184)
Q Consensus 18 ~g~fpldh~~~c~ 30 (184)
||.-||-.+|||.
T Consensus 18 rgaaplpsegecn 30 (61)
T 1dtd_B 18 RGAAPLPSEGECN 30 (61)
T ss_dssp ESCCCCGGGCEEE
T ss_pred cCCCCCCCCCccC
Confidence 7889999999994
Done!