RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7740
(184 letters)
>gnl|CDD|215274 PLN02496, PLN02496, probable phosphopantothenoylcysteine
decarboxylase.
Length = 209
Score = 95.0 bits (236), Expect = 1e-24
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
ILL +GSVA IK L + + V+TK + HF+ ++ Y
Sbjct: 22 ILLAASGSVAAIKFGNLCHCFSEWA---------EVRAVVTKASLHFIDRASLPKDVTLY 72
Query: 139 SDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
+D+DEW SW K GD VLHIEL +W D++V+APL ANTL K+A
Sbjct: 73 TDEDEWSSWNKIGDSVLHIELRRWADVMVIAPLSANTLGKIA 114
>gnl|CDD|217035 pfam02441, Flavoprotein, Flavoprotein. This family contains
diverse flavoprotein enzymes. This family includes
epidermin biosynthesis protein, EpiD, which has been
shown to be a flavoprotein that binds FMN. This enzyme
catalyzes the removal of two reducing equivalents from
the cysteine residue of the C-terminal meso-lanthionine
of epidermin to form a --C==C-- double bond. This family
also includes the B chain of dipicolinate synthase a
small polar molecule that accumulates to high
concentrations in bacterial endospores, and is thought
to play a role in spore heat resistance, or the
maintenance of heat resistance. dipicolinate synthase
catalyzes the formation of dipicolinic acid from
dihydroxydipicolinic acid. This family also includes
phenyl-acrylic acid decarboxylase (EC:4.1.1.-).
Length = 132
Score = 79.1 bits (196), Expect = 2e-19
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 16/106 (15%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLP--HKPNI 135
ILL TGS A IK L+ ++++ E + V+++K A F+
Sbjct: 2 KILLGITGSSAAIKALRLLRELKKEGAE--------VRVILSKAAKKFITPETLEALSGE 53
Query: 136 RFYSDDDEWISWEKRGDPVLHIEL-SKWCDIIVLAPLDANTLAKLA 180
Y+D +W D + HI L S+W D++V+AP ANTLAK+A
Sbjct: 54 EVYTD-----AWYDEDDIIAHIALGSRWADLMVVAPATANTLAKIA 94
>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated.
Length = 399
Score = 68.6 bits (169), Expect = 4e-14
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
I+L +G +A K EL+ ++ + + + VVMT+ A FV +
Sbjct: 8 RIVLGVSGGIAAYKALELVRRLRKAGAD--------VRVVMTEAAKKFV----TPLTFQA 55
Query: 138 YSD----DDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
S D W + HIEL+KW D++++AP A+ +AKLA
Sbjct: 56 LSGNPVSTDLWD--PAAEAAMGHIELAKWADLVLIAPATADLIAKLA 100
>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase /
phosphopantothenate--cysteine ligase. This model
represents a bifunctional enzyme that catalyzes the
second and third steps (cysteine ligation, EC 6.3.2.5,
and decarboxylation, EC 4.1.1.36) in the biosynthesis of
coenzyme A (CoA) from pantothenate in bacteria. In early
descriptions of this flavoprotein, a ts mutation in one
region of the protein appeared to cause a defect in DNA
metaobolism rather than an increased need for the
pantothenate precursor beta-alanine. This protein was
then called dfp, for DNA/pantothenate metabolism
flavoprotein. The authors responsible for detecting
phosphopantothenate--cysteine ligase activity suggest
renaming this bifunctional protein coaBC for its role in
CoA biosynthesis. This enzyme contains the FMN cofactor,
but no FAD or pyruvoyl group. The amino-terminal region
contains the phosphopantothenoylcysteine decarboxylase
activity [Biosynthesis of cofactors, prosthetic groups,
and carriers, Pantothenate and coenzyme A].
Length = 390
Score = 66.2 bits (162), Expect = 4e-13
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
ILL TG +A K EL+ ++ + E + V+MT+ A F+ L +
Sbjct: 5 KILLGVTGGIAAYKTVELVRELVRQGAE--------VKVIMTEAAKKFITPLTLEALSGH 56
Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
+ W E LHI+L+KW D+I++AP ANT++K+A
Sbjct: 57 KVVTELWGPIEHN---ALHIDLAKWADLILIAPATANTISKIA 96
>gnl|CDD|235986 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase;
Validated.
Length = 182
Score = 61.5 bits (150), Expect = 4e-12
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 20/109 (18%)
Query: 77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPD-----LPH 131
NILL +GS+A K +L Q+ + Y + V+MTK A F+ L
Sbjct: 2 KNILLAVSGSIAAYKAADLTSQLTKRGY--------QVTVLMTKAATKFITPLTLQVLSK 53
Query: 132 KPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
P + D + E + HIEL+K D+ ++AP ANT+AKLA
Sbjct: 54 NP---VHLDVMD----EHDPKLMNHIELAKRADLFLVAPATANTIAKLA 95
>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase
[Coenzyme metabolism].
Length = 392
Score = 63.1 bits (154), Expect = 4e-12
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
ILL TGS+A K EL+ + + E + VVMT+ A F+ +
Sbjct: 6 RILLGVTGSIAAYKSVELVRLLRRSGAE--------VRVVMTESARKFI----TPLTFQA 53
Query: 138 YSDDD--EWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
S + + E G V HIEL++W D++++AP ANT+AKLA
Sbjct: 54 LSGNPVYTLLDEELTG-SVEHIELARWADLLLVAPATANTIAKLA 97
>gnl|CDD|131168 TIGR02113, coaC_strep, phosphopantothenoylcysteine decarboxylase,
streptococcal. In most bacteria, a single bifunctional
protein catalyses phosphopantothenoylcysteine
decarboxylase and phosphopantothenate--cysteine ligase
activities, sequential steps in coenzyme A biosynthesis
(see TIGR00521). These activities reside in separate
proteins encoded by tandem genes in some bacterial
lineages. This model describes proteins from the genera
Streptococcus and Enterococcus homologous to the
N-terminal region of TIGR00521, corresponding to
phosphopantothenoylcysteine decarboxylase activity
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 177
Score = 56.0 bits (135), Expect = 3e-10
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
ILL TGS+A K +L Q+ +L Y ++ V+MT+ A F+ L ++
Sbjct: 2 KILLAVTGSIAAYKAADLTSQLTKLGY--------DVTVLMTQAATQFITPL----TLQV 49
Query: 138 YSDDDEWISWEKRGDP--VLHIELSKWCDIIVLAPLDANTLAKLA 180
S + + DP + HIEL+K D+ ++AP ANT+A LA
Sbjct: 50 LSKNPVHLDVMDEHDPKVINHIELAKKADLFLVAPASANTIAHLA 94
>gnl|CDD|172484 PRK13982, PRK13982, bifunctional
SbtC-like/phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Provisional.
Length = 475
Score = 50.9 bits (122), Expect = 8e-08
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKP--NI 135
+ L G +A K +LI ++++ + V+TK A FV L
Sbjct: 72 RVTLIIGGGIAAYKALDLIRRLKERGAH--------VRCVLTKAAQQFVTPLTASALSGQ 123
Query: 136 RFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
R Y+D E D HI L++ CD+IV+AP A+ +AK+A
Sbjct: 124 RVYTD---LFDPESEFD-AGHIRLARDCDLIVVAPATADLMAKMAN 165
>gnl|CDD|148383 pfam06747, CHCH, CHCH domain. we have identified a conserved
motif in the LOC118487 protein that we have called the
CHCH motif. Alignment of this protein with related
members showed the presence of three subgroups of
proteins, which are called the S (Small), N (N-terminal
extended) and C (C-terminal extended) subgroups. All
three sub-groups of proteins have in common that they
contain a predicted conserved [coiled coil 1]-[helix
1]-[coiled coil 2]-[helix 2] domain (CHCH domain).
Within each helix of the CHCH domain, there are two
cysteines present in a C-X9-C motif. The N-group
contains an additional double helix domain, and each
helix contains the C-X9-C motif. This family contains a
number of characterized proteins: Cox19 protein - a
nuclear gene of Saccharomyces cerevisiae, codes for an
11-kDa protein (Cox19p) required for expression of
cytochrome oxidase. Because cox19 mutants are able to
synthesise the mitochondrial and nuclear gene products
of cytochrome oxidase, Cox19p probably functions
post-translationally during assembly of the enzyme.
Cox19p is present in the cytoplasm and mitochondria,
where it exists as a soluble intermembrane protein.
This dual location is similar to what was previously
reported for Cox17p, a low molecular weight copper
protein thought to be required for maturation of the
CuA centre of subunit 2 of cytochrome oxidase. Cox19p
have four conserved potential metal ligands, these are
three cysteines and one histidine. Mrp10 - belongs to
the class of yeast mitochondrial ribosomal proteins
that are essential for translation. Eukaryotic
NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit.
The CHCH domain was previously called DUF657.
Length = 35
Score = 41.5 bits (98), Expect = 4e-06
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 29 CKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME 63
C ++ C+K+N+ + S CR E + C +
Sbjct: 1 CGEEFKAFLKCLKENSDELSKCRKEFDAFRQCVKK 35
>gnl|CDD|181370 PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed.
Length = 196
Score = 34.1 bits (79), Expect = 0.022
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 33/110 (30%)
Query: 84 TGSVATIKLPELIEQIEQLQYEFNKIM-IINLNVVMTKHAFHFVPDLPHKPNIRFYSDDD 142
TGS T E++ +IE+L E ++ I++ V T + RF ++
Sbjct: 13 TGSHCT--YDEVMPEIEKLVDEGAEVTPIVSYTVQTT--------------DTRFGKAEE 56
Query: 143 EWISWEKR-----GDPVLH-------IELSKWCDIIVLAPLDANTLAKLA 180
W K+ G+ V++ + K D +V+AP NT+AKLA
Sbjct: 57 ----WIKKIEEITGNKVINTIVEAEPLGPKKLLDCMVIAPCTGNTMAKLA 102
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 30.4 bits (69), Expect = 0.51
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 62 MEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNV 116
M L+ E + E + + LPE++E++E+L+ E N I
Sbjct: 565 MILNLLRVEGLQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELFGT 619
>gnl|CDD|198438 cd10288, prolactin_like, Prolactin (PRL or PRL1), chorionic
somatomammotropin, and related pituitary gland hormones.
Prolactin is primarily responsible for stimulating milk
production and breast development in mammals. Aside from
roles in reproduction, various functions have been
attributed to prolactin, more than for other pituitary
gland hormones combined. These are roles in growth and
development, metamorphosis, metabolism of lipids,
carbohydrates, and steroids, brain biochemistry and even
immunoregulation, among others. Most of these roles are
poorly understood, but it has become clear that many
prolactin-like hormones are actually produced in the
placenta and not the pituitary.
Length = 199
Score = 29.2 bits (66), Expect = 0.90
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 88 ATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNI 135
+++ PE EQ +Q++ E +II+L + H V +L
Sbjct: 61 SSLTTPENKEQAQQIKNEDLLKLIISLLRSWNEPLKHLVTELSSMKGA 108
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes
[Energy metabolism, TCA cycle].
Length = 603
Score = 29.8 bits (67), Expect = 0.93
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 36/111 (32%)
Query: 83 CTGSVATIKLPELIEQIEQLQYEFNKIMIIN---------------------LNVVMTKH 121
C S KL + E+I +L+ F K + I L +M
Sbjct: 480 CGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQVLEFARRVADYLELAELMCLD 539
Query: 122 AF--------HFVPDLPHKPNIRFYSDDDEWI---SWEKRGD---PVLHIE 158
A HF P+ P P+ +D+E++ +WE +G+ P H E
Sbjct: 540 ALNRNESCGAHFRPEFP-TPDGEAERNDEEFLKVTAWEFQGENDAPEFHYE 589
>gnl|CDD|188255 TIGR02852, spore_dpaB, dipicolinic acid synthetase, B subunit.
Members of this family represent the B subunit of
dipicolinic acid synthetase, an enzyme that synthesizes
a small molecule that appears to confer heat stability
to bacterial endospores such as those of Bacillus
subtilis. The A and B subunits are together in what was
originally designated the spoVF locus for stage V of
endospore formation [Cellular processes, Sporulation and
germination].
Length = 187
Score = 28.2 bits (63), Expect = 1.8
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 27/107 (25%)
Query: 84 TGSVATIKLPELIEQIEQLQYEFNKIM-IINLNVVMTKHAFHFVPDLPHKPNIRFYSDDD 142
TGS T L ++ Q+E+L E ++ I++ V T N RF +
Sbjct: 8 TGSHCT--LEAVMPQLEKLIAEGAEVRPIVSYTVQST--------------NTRF-GEGA 50
Query: 143 EWISW--EKRGDPVLH-------IELSKWCDIIVLAPLDANTLAKLA 180
EWI E G ++ D +V+APL N+++K A
Sbjct: 51 EWIKKIEEITGFKAINTIVEAEPFGPKIPLDCMVIAPLTGNSMSKFA 97
>gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine
4,6-dehydratase/5-epimerase. The FnlA enzyme is the
first step in the biosynthesis of UDP-FucNAc from
UDP-GlcNAc in E. coli (along with FnlB and FnlC). The
proteins identified by this model include FnlA homologs
in the O-antigen clusters of O4, O25, O26, O29 (Shigella
D11), O118, O145 and O172 serotype strains, all of which
produce O-antigens containing FucNAc (or the further
modified FucNAm). A homolog from Pseudomonas aerugiosa
serotype O11, WbjB, also involved in the biosynthesis of
UDP-FucNAc has been characterized and is now believed to
carry out both the initial 4,6-dehydratase reaction and
the subsequent epimerization of the resulting methyl
group at C-5. A phylogenetic tree of related sequences
shows a distinct clade of enzymes involved in the
biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This
clade appears to be descendant from the common ancestor
of the Pseudomonas and E. coli fucose-biosynthesis
enzymes. It has been hypothesized that the first step in
the biosynthesis of these two compounds may be the same,
and thus that these enzymes all have the same function.
At present, lacking sufficient confirmation of this, the
current model trusted cutoff only covers the tree
segment surrounding the E. coli genes. The clades
containing the Pseudomonas and QuiNAc biosynthesis
enzymes score above the noise cutoff. Immediately below
the noise cutoff are enzymes involved in the
biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again
may or may not produce the same product.
Length = 337
Score = 28.4 bits (63), Expect = 2.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 7 GQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSS 48
G K+ + + DK +P++ G KA M K M+ K N DSS
Sbjct: 115 GVKRVVCLSTDKAVYPINAMGISKAMMEKVMVA-KSRNVDSS 155
>gnl|CDD|218865 pfam06033, DUF918, Nucleopolyhedrovirus protein of unknown function
(DUF918). This family consists of several
Nucleopolyhedrovirus proteins with no known function.
Length = 153
Score = 27.6 bits (62), Expect = 2.8
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLN 115
+ V + P+ +E I +++ NK +II L+
Sbjct: 57 YENARLTVDGVQLPRAPDFVECIVFNEHDRNKSLIIELH 95
>gnl|CDD|182544 PRK10555, PRK10555, aminoglycoside/multidrug efflux system;
Provisional.
Length = 1037
Score = 27.9 bits (62), Expect = 3.8
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQL 102
ILLC TG++A LP +EQ L
Sbjct: 17 ILLCLTGTLAIFSLP--VEQYPDL 38
>gnl|CDD|213628 TIGR01487, Pglycolate_arch, phosphoglycolate phosphatase,
TA0175-type. This group of Archaeal sequences, now
known to be phosphoglycolate phosphatases, is most
closely related to the sucrose-phosphate phosphatases
from plants and cyanobacteria (TIGR01485). Together,
these two models comprise a subfamily model (TIGR01482).
TIGR01482, in turn, is a member of the IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases.
Length = 215
Score = 27.4 bits (61), Expect = 4.3
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 17/89 (19%)
Query: 46 DSSACRDEIKDYLGCRMEKELMAKEDWEKLEFNILL-------CCTGSVATIKLPELIEQ 98
+ +D ME+E E+ +K L + E+ E
Sbjct: 65 NGGVIFYNKEDIFLANMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREI 124
Query: 99 IEQLQYEFNKIMIINLNVVMTKHAFHFVP 127
I++ LN+V + A H +
Sbjct: 125 IKER----------GLNLVASGFAIHIMK 143
>gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves
as an electron donor in several oxygenase systems and is
a component of nitric oxide synthases and methionine
synthase reductases. CYPOR transfers two electrons from
NADPH to the heme of cytochrome p450 via FAD and FMN.
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing
enzyme that catalyzes the reversible electron transfer
between NADP(H) and electron carrier proteins such as
ferredoxin and flavodoxin. Isoforms of these
flavoproteins (i.e. having a non-covalently bound FAD as
a prosthetic group) are present in chloroplasts,
mitochondria, and bacteria in which they participate in
a wide variety of redox metabolic pathways. The
C-terminal domain contains most of the NADP(H) binding
residues and the N-terminal domain interacts
non-covalently with the isoalloxazine rings of the
flavin molecule which lies largely in a large gap
betweed the two domains. Ferredoxin-NADP+ reductase
first accepts one electron from reduced ferredoxin to
form a flavin semiquinone intermediate. The enzyme then
accepts a second electron to form FADH2 which then
transfers two electrons and a proton to NADP+ to form
NADPH.
Length = 382
Score = 27.2 bits (61), Expect = 5.3
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 57 YLGCRME-KELMAKEDWEKLE 76
Y GCR E K+ + KE+ E+ E
Sbjct: 268 YFGCRHEDKDYLYKEELEEYE 288
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 149
Score = 26.4 bits (59), Expect = 7.6
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 159 LSKWCDIIVLA---PLDANTLAKLATYDR 184
+ D+ V+A D LA L YD
Sbjct: 19 ALERPDVEVVAINDLTDPEYLAYLLKYDS 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.436
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,481,083
Number of extensions: 864707
Number of successful extensions: 884
Number of sequences better than 10.0: 1
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 32
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)