RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7740
(184 letters)
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S;
HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1
PDB: 1mvn_A* 1e20_A*
Length = 209
Score = 111 bits (280), Expect = 3e-31
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
+LL +GSVA IK L + + V+TK + HF+ L +
Sbjct: 21 RVLLAASGSVAAIKFGNLCHCFTEW---------AEVRAVVTKSSLHFLDKLSLPQEVTL 71
Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
Y+D+DEW SW K GDPVLHIEL +W D++V+APL ANTL K+A
Sbjct: 72 YTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIA 114
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN;
2.91A {Homo sapiens} SCOP: c.34.1.1
Length = 206
Score = 103 bits (259), Expect = 3e-28
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 9/104 (8%)
Query: 77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIR 136
F++L+ TGSVA +KLP L+ ++ + + + VV T+ A HF P +
Sbjct: 20 FHVLVGVTGSVAALKLPLLVSKLLDIP-------GLEVAVVTTERAKHFYS--PQDIPVT 70
Query: 137 FYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
YSD DEW W+ R DPVLHI+L +W D++++APLDANTL K+A
Sbjct: 71 LYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVA 114
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like
fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus
epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Length = 181
Score = 72.2 bits (178), Expect = 2e-16
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
+L+C T S+ I + I +++Q E +N++ + + +F+ ++
Sbjct: 4 KLLICATASINVININHYIVELKQHFDE--------VNILFSPSSKNFINTD----VLKL 51
Query: 138 YSDD--DEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
+ D+ DE + HI + + + I++ P ANT+ K+A
Sbjct: 52 FCDNLYDEIKDPL-----LNHINIVENHEYILVLPASANTINKIA 91
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP:
c.34.1.1
Length = 194
Score = 71.5 bits (176), Expect = 5e-16
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 23/108 (21%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVP-----DLPHK 132
+L+ GS++++ + + + E + VVMTK A +P
Sbjct: 10 KLLIGICGSISSVGISSYLLYFKSFFKE--------IRVVMTKTAEDLIPAHTVSYFCDH 61
Query: 133 PNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
YS+ E G H+E+ +W DI + P AN L + A
Sbjct: 62 V----YSEHGE------NGKRHSHVEIGRWADIYCIIPATANILGQTA 99
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center
for structural genomics of infec diseases, csgid,
oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus}
Length = 175
Score = 70.7 bits (174), Expect = 6e-16
Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 33/112 (29%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFV-P--------D 128
N+L+C GSV +I + I +++ E +NV+ + + F+ +
Sbjct: 7 NVLICLCGSVNSINISHYIIELKSKFDE--------VNVIASTNGRKFINGEILKQFCDN 58
Query: 129 LPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
+ +D +++ H++++ D I++ P +NT+ K+A
Sbjct: 59 Y-------YDEFEDPFLN---------HVDIANKHDKIIILPATSNTINKIA 94
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG,
structural protein structure initiative, midwest center
for structural genomics; 2.10A {Bacillus halodurans}
Length = 201
Score = 66.7 bits (163), Expect = 3e-14
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 17/108 (15%)
Query: 78 NILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFV----PDLPHK 132
++ TGS T ++ +E++ +L + + +T
Sbjct: 9 HVGFGLTGSHCTYHEVLPQMERLVELGAK--------VTPFVTHTVQTTDTKFGESSEWI 60
Query: 133 PNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
I+ +++ S K D +V+AP+ N+ +K A
Sbjct: 61 NKIKQITEEPIVDSMVK----AEPFGPKTPLDCMVIAPMTGNSTSKFA 104
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Bacillus cereus}
Length = 207
Score = 66.3 bits (162), Expect = 5e-14
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 15/107 (14%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLP----HKP 133
I TGS T + E++ +E+L E + V++
Sbjct: 7 RIGFGFTGSHCTYE--EVMPHLEKLIAEG-----AEVRPVVSYTVQSTNTRFGEGAEWIK 59
Query: 134 NIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
I + S + D +V+APL N+++K A
Sbjct: 60 KIEEITGFKAINSIVG----AEPLGPKIPLDCMVIAPLTGNSMSKFA 102
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX,
montreal-kingston bacterial structu genomics initiative,
BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Length = 197
Score = 33.3 bits (76), Expect = 0.025
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 11/104 (10%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
+++ TG+ L++ + ++ + ++VM+K A + +
Sbjct: 3 LIVGMTGATGAPLGVALLQALREMPN-------VETHLVMSKWAKTT---IELETPYSAR 52
Query: 139 SDDDEWISWEKRGDP-VLHIELSKWCDIIVLAPLDANTLAKLAT 181
D S D +++ P TLA +
Sbjct: 53 DVAALADFSHNPADQAATISSGSFRTDGMIVIPCSMKTLAGIRA 96
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural
genomics, PSI, protein structure initiative; 3.20A
{Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Length = 291
Score = 32.5 bits (73), Expect = 0.057
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 23 LDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMAKEDWEKLEFNIL-- 80
L + + + N ++ I +L ++L+ N++
Sbjct: 170 LKQFDLTPPEIIDRVYRQPFPNRFLASLSPFIAQHLEEPAIRQLVMNSFIAFFRRNVMQY 229
Query: 81 ------LCCTGSVATIKLPELIEQIEQLQYEFNKIM 110
+ GS+A L + Q + KI+
Sbjct: 230 DYKQYPVHFIGSIAYCYKEILQDAARQTGIQIGKIL 265
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome
BC1, membrane protein, heme protein, rieske iron
protein, cytochrome B, complex III; HET: BHG HEM HEC
SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB:
1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H*
1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H*
2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Length = 78
Score = 28.3 bits (63), Expect = 0.36
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 29 CKAFMTKYMICIKKNNSDSSA---CRDEIKDYLGCR 61
C + +C ++ +S S C +E+ D+L R
Sbjct: 30 CVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 65
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 30.1 bits (67), Expect = 0.46
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 12/55 (21%)
Query: 116 VVMTKHAFHFVPDLPH---------KPNIRFYSDD---DEWISWEKRGDPVLHIE 158
+V++ + + + Y D D +S + DP+L+ E
Sbjct: 169 IVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGE 223
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein,
complex III subunit VIII...; cytochrome BC1, membrane
protein, heme protein, rieske iron protein; HET: HEM
WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB:
3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H*
3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Length = 77
Score = 27.5 bits (61), Expect = 0.71
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 29 CKAFMTKYMICIKKNNSDSSA---CRDEIKDYLGCR 61
C + +C + +S S C +E+ D+L R
Sbjct: 29 CVKARERLELCDARVSSRSHTEEQCTEELFDFLHAR 64
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 2.30A
{Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Length = 291
Score = 28.9 bits (64), Expect = 0.78
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 8/96 (8%)
Query: 23 LDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMAKEDWEKLEFNIL-- 80
L YG A + + + N + I +L L+ + L N+L
Sbjct: 172 LQEYGLTSADIIESVYRKPFPNRFLAGFSPFIAQHLDIPAVYSLVQNSFDDFLVRNVLRY 231
Query: 81 ------LCCTGSVATIKLPELIEQIEQLQYEFNKIM 110
L GSVA L I++ ++
Sbjct: 232 NRPDLPLHFIGSVAFHYREVLSSVIKKRGLTLGSVL 267
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress,
MERR family, activator; HET: DNA; 2.80A {Escherichia
coli} PDB: 2zhh_A
Length = 154
Score = 28.1 bits (63), Expect = 1.1
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 52 DEIKDYLGCRMEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQ 103
I + G E ++ ++W++L ++ EL +I L
Sbjct: 71 ATIGEAFGVLPEGHTLSAKEWKQL------------SSQWREELDRRIHTLV 110
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP:
a.17.1.1 PDB: 2hp8_A
Length = 68
Score = 26.6 bits (58), Expect = 1.6
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 29 CKAFMTKYMICIKKNNSDSSACRDEIKDYLGC 60
C+ + C++ N+ S C+ I++ C
Sbjct: 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKC 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.8
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 19/40 (47%)
Query: 69 KEDWEKLEFNILLCCTGSVATIKL------PEL-IE-QIE 100
K+ +KL+ A++KL P L I+ +E
Sbjct: 19 KQALKKLQ-----------ASLKLYADDSAPALAIKATME 47
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein,
enterococcus faecalis V583, PSI-2, MCSG, structural
genomics; 1.60A {Enterococcus faecalis}
Length = 257
Score = 27.3 bits (60), Expect = 3.0
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 134 NIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVL 168
N+R ++ D+ W R + V + + +
Sbjct: 7 NVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCI 41
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein;
alpha-beta protein, structural genomics, PSI-2; 2.50A
{Bacteroides vulgatus atcc 8482}
Length = 267
Score = 27.2 bits (60), Expect = 3.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 134 NIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVL 168
NIR+ + D +W+ R D V DI+ +
Sbjct: 10 NIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGM 44
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 27.0 bits (60), Expect = 3.4
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 67 MAKEDWEKLEFNILLCCTGSVATIKL 92
MA L +L C GS A L
Sbjct: 1 MA---GFPLLLTLLTHCAGSWAQSVL 23
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 25.9 bits (58), Expect = 9.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 134 NIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIV 167
N+RF S EK+ L +++ D+ V
Sbjct: 114 NVRFNSG-------EKKSTDDLSKKIASLGDVFV 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.436
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,936,015
Number of extensions: 166953
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 27
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)