RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7740
(184 letters)
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase
(PPC decarboxylase, halotolerance protein Hal3a)
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 182
Score = 77.1 bits (189), Expect = 9e-19
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
+LL +GSVA IK L + + V+TK + HF+ L + Y
Sbjct: 4 VLLAASGSVAAIKFGNLCHCFTEW---------AEVRAVVTKSSLHFLDKLSLPQEVTLY 54
Query: 139 SDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKL 179
+D+DEW SW K GDPVLHIEL +W D++V+APL ANTL K+
Sbjct: 55 TDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKI 95
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase
(PPC decarboxylase, halotolerance protein Hal3a) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 72.8 bits (178), Expect = 5e-17
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)
Query: 77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIR 136
F++L+ TGSVA +KLP L+ ++ + + + VV T+ A HF P +
Sbjct: 5 FHVLVGVTGSVAALKLPLLVSKLLDIPG-------LEVAVVTTERAKHFYS--PQDIPVT 55
Query: 137 FYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY 182
YSD DEW W+ R DPVLHI+L +W D++++APLDANTL K+A+
Sbjct: 56 LYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASG 101
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId:
69002]}
Length = 183
Score = 66.7 bits (162), Expect = 7e-15
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
+L+ GS++++ + + + E VVMTK A +P
Sbjct: 8 KLLIGICGSISSVGISSYLLYFKSFFKEI--------RVVMTKTAEDLIPAHTVS----- 54
Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY 182
Y D + + G H+E+ +W DI + P AN L + A
Sbjct: 55 YFCDHVYSEHGENGKRHSHVEIGRWADIYCIIPATANILGQTANG 99
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1
{Escherichia coli O157:H7 [TaxId: 83334]}
Length = 186
Score = 60.4 bits (146), Expect = 2e-12
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 79 ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
+++ TG+ L++ + ++ + ++VM+K A +
Sbjct: 3 LIVGMTGATGAPLGVALLQALREMPN-------VETHLVMSKWAKTTIELETPYSARDVA 55
Query: 139 SDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
+ D + + S D +++ P TLA +
Sbjct: 56 ALADFSHNPADQAAT--ISSGSFRTDGMIVIPCSMKTLAGIRA 96
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine
decarboxylase) EpiD {Staphylococcus epidermidis [TaxId:
1282]}
Length = 174
Score = 57.8 bits (139), Expect = 2e-11
Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
+L+C T S+ I + I ++ K +N++ + + +F+ K
Sbjct: 4 KLLICATASINVININHYIVEL--------KQHFDEVNILFSPSSKNFINTDVLKLFCDN 55
Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY 182
D+ + + +I + + + I++ P ANT+ K+A
Sbjct: 56 LYDEIKD-------PLLNNINIVENHEYILVLPASANTINKIANG 93
>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 29.4 bits (66), Expect = 0.18
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 52 DEIKDYLGCRMEKELMAKEDWEKLEFNILLC-CTGSVATIKLPELIEQIEQLQYEFNKIM 110
D I++ + ++ + D + LE + + G+V I+ IE Q Q++ +
Sbjct: 119 DAIQE----WVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKREN 174
Query: 111 IINLNVV 117
N++V
Sbjct: 175 FCNIHVS 181
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1
complex (Ubiquinol-cytochrome c reductase) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 66
Score = 26.2 bits (58), Expect = 0.72
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 27 GDCKAFMTKYMICIKKNNSDSSA---CRDEIKDYLGCR 61
C + +C ++ +S S C +E+ D+L R
Sbjct: 16 EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 53
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 68
Score = 26.0 bits (57), Expect = 0.72
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 29 CKAFMTKYMICIKKNNSDSSACRDEIKDYLGC 60
C+ + C++ N+ S C+ I++ C
Sbjct: 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKC 38
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 24.3 bits (52), Expect = 8.4
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 94 ELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDP 153
EL+ ++ + Q K ++I T+++ F + +
Sbjct: 18 ELMRRVRRFQIAQYKCLVIKYAKD-TRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAV 76
Query: 154 VLHIELSKWCDIIVLAPLDANTLAKLATY 182
+ E + DI+ AN +
Sbjct: 77 IGIDEGQFFPDIVEFCEAMANAGKTVIVA 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.436
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 752,279
Number of extensions: 36191
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 15
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)