BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7743
         (133 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TSM|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
           From Brucella Melitensis
 pdb|3TSM|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
           From Brucella Melitensis
          Length = 272

 Score = 29.3 bits (64), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 5   LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHARELRQKILQGVDQMSLFS 60
           L E++    +E+ LKL +R     +RN RS   ++  S+  A+      L  V +  +F+
Sbjct: 173 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLL-VGESGIFT 231

Query: 61  HEECLVLERN 70
           HE+CL LE++
Sbjct: 232 HEDCLRLEKS 241


>pdb|4EGS|A Chain A, Crystal Structure Analysis Of Low Molecular Weight Protein
           Tyrosine Phosphatase From T. Tengcongensis
 pdb|4EGS|B Chain B, Crystal Structure Analysis Of Low Molecular Weight Protein
           Tyrosine Phosphatase From T. Tengcongensis
          Length = 180

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 33  YDIGQSKHHARELRQKILQGVDQM--SLFSHEECLV 66
           Y I  S H A+ LR++ L+G D +    FSH+  LV
Sbjct: 93  YGIDISDHRAKSLREEDLKGADLVLAMAFSHKRSLV 128


>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
 pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
 pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
 pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
 pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
 pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
          Length = 142

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 72  DEVSSLAEQGQYKPCTVDRAPLRNKYFFGEG 102
           D   SL E G +   +V+ A     YFFGEG
Sbjct: 105 DYADSLTENGTHGSDSVESAAREIAYFFGEG 135


>pdb|2GHR|A Chain A, Crystal Structure Of Homoserine O-Succinyltransferase
           (Np_981826.1) From Bacillus Cereus Atcc 10987 At 2.40 A
           Resolution
          Length = 302

 Score = 25.8 bits (55), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 35  IGQSKHHARELRQKILQGVDQMSLFSHE-ECLVLERNIDEVSSLA 78
            G  +H  RE   K+LQG D++    H     V E +I EV  L 
Sbjct: 166 FGVFEHEVREQHVKLLQGFDELFFAPHSRHTEVRESDIREVKELT 210


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,970,716
Number of Sequences: 62578
Number of extensions: 147442
Number of successful extensions: 401
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 7
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)