BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7743
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GPB5|ALKB5_XENLA RNA demethylase ALKBH5 OS=Xenopus laevis GN=alkbh5 PE=2 SV=1
Length = 360
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 63/80 (78%)
Query: 47 QKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYG 106
+K+ G+ QM LFS +EC +E IDEV S A++G Y+ TVDRAPLRNKYFFGEGYTYG
Sbjct: 51 RKVRSGIRQMRLFSPDECAAIESKIDEVVSRADKGLYQEHTVDRAPLRNKYFFGEGYTYG 110
Query: 107 SQLVRKGLGNERLYPEGEVD 126
+QL R+G G ERLYP+GEVD
Sbjct: 111 AQLQRRGPGQERLYPKGEVD 130
>sp|Q66JG8|ALKB5_XENTR RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1
Length = 358
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 63/80 (78%)
Query: 47 QKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYG 106
+K+ G+ Q+ LFS +EC +E IDEV S AE+G Y+ TVDRAPLRNKYFFGEGYTYG
Sbjct: 49 RKVRSGIRQVRLFSPDECARIEAKIDEVVSRAEKGLYREHTVDRAPLRNKYFFGEGYTYG 108
Query: 107 SQLVRKGLGNERLYPEGEVD 126
+QL R+G G ERLYP+GEVD
Sbjct: 109 AQLQRRGPGQERLYPKGEVD 128
>sp|Q6P6C2|ALKB5_HUMAN RNA demethylase ALKBH5 OS=Homo sapiens GN=ALKBH5 PE=1 SV=2
Length = 394
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 61/80 (76%)
Query: 47 QKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYG 106
+K+ G+ QM LFS +EC +E IDEV S AE+G Y TVDRAPLRNKYFFGEGYTYG
Sbjct: 83 RKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYG 142
Query: 107 SQLVRKGLGNERLYPEGEVD 126
+QL ++G G ERLYP G+VD
Sbjct: 143 AQLQKRGPGQERLYPPGDVD 162
>sp|E1BH29|ALKB5_BOVIN RNA demethylase ALKBH5 OS=Bos taurus GN=ALKBH5 PE=3 SV=1
Length = 394
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 61/80 (76%)
Query: 47 QKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYG 106
+K+ G+ QM LFS +EC +E IDEV S AE+G Y TVDRAPLRNKYFFGEGYTYG
Sbjct: 83 RKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYG 142
Query: 107 SQLVRKGLGNERLYPEGEVD 126
+QL ++G G ERLYP G+VD
Sbjct: 143 AQLQKRGPGQERLYPPGDVD 162
>sp|D3ZKD3|ALKB5_RAT RNA demethylase ALKBH5 OS=Rattus norvegicus GN=Alkbh5 PE=3 SV=1
Length = 395
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 61/80 (76%)
Query: 47 QKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYG 106
+K+ G+ Q+ LFS +EC +E IDEV S AE+G Y TVDRAPLRNKYFFGEGYTYG
Sbjct: 84 RKVKSGIRQIRLFSQDECSKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYG 143
Query: 107 SQLVRKGLGNERLYPEGEVD 126
+QL ++G G ERLYP G+VD
Sbjct: 144 AQLQKRGPGQERLYPPGDVD 163
>sp|Q3TSG4|ALKB5_MOUSE RNA demethylase ALKBH5 OS=Mus musculus GN=Alkbh5 PE=1 SV=2
Length = 395
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 61/80 (76%)
Query: 47 QKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYG 106
+K+ G+ Q+ LFS +EC +E IDEV S AE+G Y TVDRAPLRNKYFFGEGYTYG
Sbjct: 84 RKVKSGIRQIRLFSQDECSKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYG 143
Query: 107 SQLVRKGLGNERLYPEGEVD 126
+QL ++G G ERLYP G+VD
Sbjct: 144 AQLQKRGPGQERLYPPGDVD 163
>sp|Q08BA6|ALKB5_DANRE RNA demethylase ALKBH5 OS=Danio rerio GN=alkbh5 PE=2 SV=1
Length = 352
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 62/80 (77%)
Query: 47 QKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYG 106
+++ G+ Q S+F+ EEC +E IDEV + A++G Y+ TVDRAPLRNKYFFGEGYTYG
Sbjct: 51 RRVKSGIKQASIFTLEECARIEAKIDEVVAKADKGLYREHTVDRAPLRNKYFFGEGYTYG 110
Query: 107 SQLVRKGLGNERLYPEGEVD 126
+QL ++G G ERLY +GEVD
Sbjct: 111 AQLEKRGPGQERLYSKGEVD 130
>sp|Q2J867|ARLY_FRASC Argininosuccinate lyase OS=Frankia sp. (strain CcI3) GN=argH PE=3
SV=1
Length = 464
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 29 RSSPYDIGQSKHHARELRQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTV 88
R +PYD+ SK HAR L + L D+++ + +DE+S QG+++P
Sbjct: 28 RLAPYDLLASKSHARVLHRAGLLDADELA--------AMLAALDELSDAVAQGRFRPTVE 79
Query: 89 D 89
D
Sbjct: 80 D 80
>sp|A0RMK8|FABH_CAMFF 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Campylobacter fetus
subsp. fetus (strain 82-40) GN=fabH PE=3 SV=1
Length = 328
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 6 SELYKCQVVEQNLKLKNRYSRNQRSSPYDIGQSKHHARELRQKILQGVDQMSLFSHEECL 65
+E++K V + + +N SS DI H LR I++ V Q F+ E+C+
Sbjct: 218 NEVFKIAVNTLAKDVVDILEKNSVSSK-DIDLFIPHQANLR--IIEAVKQRLDFTDEQCV 274
Query: 66 VLERNIDEVSS----LAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKG 113
V + SS +A Y+ + + L FG G+T+GS L+R G
Sbjct: 275 VTVVDYGNTSSASIPMAMNDAYEDGRLKQGSLILLDAFGGGFTWGSALLRFG 326
>sp|Q5R7B4|STRA6_PONAB Stimulated by retinoic acid gene 6 protein homolog OS=Pongo abelii
GN=STRA6 PE=2 SV=1
Length = 667
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 101 EGYTYGSQLVRKGLGNERLYPEGEV 125
E Y+YGS + + G E L PEGEV
Sbjct: 16 EDYSYGSWYIDEPQGGEELQPEGEV 40
>sp|Q9BX79|STRA6_HUMAN Stimulated by retinoic acid gene 6 protein homolog OS=Homo sapiens
GN=STRA6 PE=1 SV=1
Length = 667
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 101 EGYTYGSQLVRKGLGNERLYPEGEV 125
E Y+YGS + + G E L PEGEV
Sbjct: 16 EDYSYGSWYIDEPQGGEELQPEGEV 40
>sp|Q6NHG4|ARLY_CORDI Argininosuccinate lyase OS=Corynebacterium diphtheriae (strain
ATCC 700971 / NCTC 13129 / Biotype gravis) GN=argH PE=3
SV=1
Length = 477
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 31 SPYDIGQSKHHARELRQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVD 89
+PYD+ SK HAR L ++ L S + + +D++ G++KP D
Sbjct: 38 APYDVLASKAHARVL--------NKAKLLSDSDLETMLGGLDKLGKAVASGEFKPLPTD 88
>sp|B0CGT9|TRPC_BRUSI Indole-3-glycerol phosphate synthase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=trpC PE=3 SV=1
Length = 268
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHAREL-RQKILQGVDQMSLF 59
L E++ +E+ LKL +R +RN RS ++ S+ A+ ++L G + +F
Sbjct: 169 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVG--ESGIF 226
Query: 60 SHEECLVLERN 70
+HE+CL LE++
Sbjct: 227 THEDCLRLEKS 237
>sp|P66989|TRPC_BRUSU Indole-3-glycerol phosphate synthase OS=Brucella suis biovar 1
(strain 1330) GN=trpC PE=3 SV=1
Length = 268
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHAREL-RQKILQGVDQMSLF 59
L E++ +E+ LKL +R +RN RS ++ S+ A+ ++L G + +F
Sbjct: 169 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVG--ESGIF 226
Query: 60 SHEECLVLERN 70
+HE+CL LE++
Sbjct: 227 THEDCLRLEKS 237
>sp|P66988|TRPC_BRUME Indole-3-glycerol phosphate synthase OS=Brucella melitensis biotype
1 (strain 16M / ATCC 23456 / NCTC 10094) GN=trpC PE=3
SV=1
Length = 268
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHAREL-RQKILQGVDQMSLF 59
L E++ +E+ LKL +R +RN RS ++ S+ A+ ++L G + +F
Sbjct: 169 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVG--ESGIF 226
Query: 60 SHEECLVLERN 70
+HE+CL LE++
Sbjct: 227 THEDCLRLEKS 237
>sp|C0RJB1|TRPC_BRUMB Indole-3-glycerol phosphate synthase OS=Brucella melitensis biotype
2 (strain ATCC 23457) GN=trpC PE=3 SV=1
Length = 268
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHAREL-RQKILQGVDQMSLF 59
L E++ +E+ LKL +R +RN RS ++ S+ A+ ++L G + +F
Sbjct: 169 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVG--ESGIF 226
Query: 60 SHEECLVLERN 70
+HE+CL LE++
Sbjct: 227 THEDCLRLEKS 237
>sp|A9M5F4|TRPC_BRUC2 Indole-3-glycerol phosphate synthase OS=Brucella canis (strain ATCC
23365 / NCTC 10854) GN=trpC PE=3 SV=1
Length = 268
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHAREL-RQKILQGVDQMSLF 59
L E++ +E+ LKL +R +RN RS ++ S+ A+ ++L G + +F
Sbjct: 169 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVG--ESGIF 226
Query: 60 SHEECLVLERN 70
+HE+CL LE++
Sbjct: 227 THEDCLRLEKS 237
>sp|Q57CZ8|TRPC_BRUAB Indole-3-glycerol phosphate synthase OS=Brucella abortus biovar 1
(strain 9-941) GN=trpC PE=3 SV=1
Length = 268
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHAREL-RQKILQGVDQMSLF 59
L E++ +E+ LKL +R +RN RS ++ S+ A+ ++L G + +F
Sbjct: 169 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVG--ESGIF 226
Query: 60 SHEECLVLERN 70
+HE+CL LE++
Sbjct: 227 THEDCLRLEKS 237
>sp|Q2YRR4|TRPC_BRUA2 Indole-3-glycerol phosphate synthase OS=Brucella abortus (strain
2308) GN=trpC PE=1 SV=1
Length = 268
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHAREL-RQKILQGVDQMSLF 59
L E++ +E+ LKL +R +RN RS ++ S+ A+ ++L G + +F
Sbjct: 169 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVG--ESGIF 226
Query: 60 SHEECLVLERN 70
+HE+CL LE++
Sbjct: 227 THEDCLRLEKS 237
>sp|B2S5Z1|TRPC_BRUA1 Indole-3-glycerol phosphate synthase OS=Brucella abortus (strain
S19) GN=trpC PE=3 SV=1
Length = 268
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHAREL-RQKILQGVDQMSLF 59
L E++ +E+ LKL +R +RN RS ++ S+ A+ ++L G + +F
Sbjct: 169 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVG--ESGIF 226
Query: 60 SHEECLVLERN 70
+HE+CL LE++
Sbjct: 227 THEDCLRLEKS 237
>sp|A5VQR5|TRPC_BRUO2 Indole-3-glycerol phosphate synthase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=trpC PE=3 SV=1
Length = 268
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 LSELYKCQVVEQNLKLKNRY----SRNQRSSPYDIGQSKHHAREL-RQKILQGVDQMSLF 59
L E++ +E+ LKL +R +RN RS ++ S+ A+ ++L G + +F
Sbjct: 169 LIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVG--ESGIF 226
Query: 60 SHEECLVLERN 70
+HE+CL LE++
Sbjct: 227 THEDCLRLEKS 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,508,167
Number of Sequences: 539616
Number of extensions: 1853726
Number of successful extensions: 4337
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 4324
Number of HSP's gapped (non-prelim): 38
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)