Query psy7743
Match_columns 133
No_of_seqs 13 out of 15
Neff 1.8
Searched_HMMs 46136
Date Fri Aug 16 17:40:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4176|consensus 97.6 1.1E-05 2.5E-10 68.0 -0.7 81 48-128 97-182 (323)
2 PF10750 DUF2536: Protein of u 65.3 3 6.5E-05 29.5 0.8 35 55-89 11-45 (68)
3 PF04536 TPM: TLP18.3, Psb32 a 60.3 8.2 0.00018 25.5 2.2 34 58-92 1-34 (119)
4 cd08810 CARD_BCL10 Caspase act 56.9 9.2 0.0002 27.1 2.1 23 47-69 19-41 (84)
5 cd08785 CARD_CARD9-like Caspas 52.8 12 0.00025 26.4 2.0 25 47-71 19-43 (86)
6 TIGR01837 PHA_granule_1 poly(h 46.7 35 0.00076 24.7 3.8 33 45-77 79-111 (118)
7 KOG0225|consensus 45.1 52 0.0011 29.7 5.3 49 31-79 293-350 (394)
8 cd08323 CARD_APAF1 Caspase act 42.9 22 0.00048 24.9 2.2 23 48-70 18-40 (86)
9 PF13581 HATPase_c_2: Histidin 41.2 79 0.0017 20.9 4.6 43 42-85 8-50 (125)
10 PF08946 Osmo_CC: Osmosensory 39.5 15 0.00033 24.4 0.9 37 39-75 3-39 (46)
11 cd03211 GST_C_Metaxin2 GST_C f 38.3 1.1E+02 0.0024 21.5 5.2 47 44-104 36-85 (126)
12 PF12243 CTK3: CTD kinase subu 38.2 38 0.00083 25.7 3.0 32 38-73 106-137 (139)
13 PF09082 DUF1922: Domain of un 36.8 27 0.00058 24.5 1.8 45 10-62 22-66 (68)
14 PF06058 DCP1: Dcp1-like decap 36.1 32 0.00069 25.2 2.2 24 52-75 99-122 (122)
15 PF00619 CARD: Caspase recruit 35.8 36 0.00077 21.6 2.2 22 48-69 20-41 (85)
16 PF13532 2OG-FeII_Oxy_2: 2OG-F 33.8 34 0.00074 24.5 2.0 51 57-107 7-61 (194)
17 cd08329 CARD_BIRC2_BIRC3 Caspa 33.5 36 0.00078 23.8 2.1 23 48-70 27-49 (94)
18 TIGR00153 conserved hypothetic 32.7 1.2E+02 0.0026 23.1 4.9 44 37-80 54-99 (216)
19 PF01765 RRF: Ribosome recycli 32.5 77 0.0017 23.7 3.8 40 39-78 107-149 (165)
20 PF09388 SpoOE-like: Spo0E lik 32.3 1.2E+02 0.0025 18.4 4.0 37 40-77 4-40 (45)
21 PF05721 PhyH: Phytanoyl-CoA d 32.2 60 0.0013 22.0 2.9 19 57-75 11-29 (211)
22 COG4332 Uncharacterized protei 31.6 4.2 9.2E-05 33.7 -3.3 48 50-97 55-102 (203)
23 PF11439 CesA: Type III secret 31.4 19 0.00042 26.8 0.4 8 100-107 59-66 (95)
24 PF01865 PhoU_div: Protein of 29.0 1.4E+02 0.003 22.1 4.7 43 37-79 51-95 (214)
25 cd08330 CARD_ASC_NALP1 Caspase 27.3 57 0.0012 22.2 2.2 22 48-69 19-40 (82)
26 PRK05408 oxidative damage prot 26.2 23 0.0005 26.0 0.1 33 49-104 48-80 (90)
27 PF01913 FTR: Formylmethanofur 25.8 25 0.00055 27.7 0.3 13 98-110 123-135 (144)
28 cd00520 RRF Ribosome recycling 25.6 1.2E+02 0.0027 23.3 4.0 38 40-77 122-162 (179)
29 PF14182 YgaB: YgaB-like prote 25.5 1.2E+02 0.0026 22.0 3.6 15 6-20 21-35 (79)
30 cd08326 CARD_CASP9 Caspase act 24.7 67 0.0014 22.2 2.2 22 48-69 20-41 (84)
31 PF10991 DUF2815: Protein of u 24.7 1E+02 0.0022 24.4 3.4 33 63-95 43-78 (181)
32 PF13040 DUF3901: Protein of u 24.2 75 0.0016 20.2 2.1 16 58-73 20-35 (40)
33 COG2511 GatE Archaeal Glu-tRNA 23.5 1.4E+02 0.003 28.6 4.5 83 37-128 356-438 (631)
34 PF04362 Iron_traffic: Bacteri 23.2 29 0.00064 25.3 0.2 35 47-104 46-80 (88)
35 TIGR02408 ectoine_ThpD ectoine 23.1 85 0.0018 24.9 2.7 28 50-77 27-55 (277)
36 PF00676 E1_dh: Dehydrogenase 22.8 2.1E+02 0.0046 23.3 5.0 32 47-78 256-287 (300)
37 COG0332 FabH 3-oxoacyl-[acyl-c 22.6 29 0.00063 29.5 0.0 17 97-113 307-323 (323)
38 PF10957 DUF2758: Protein of u 22.2 67 0.0015 21.7 1.7 23 55-77 3-25 (60)
39 cd08332 CARD_CASP2 Caspase act 21.5 84 0.0018 21.7 2.2 23 48-70 24-46 (90)
40 cd08819 CARD_MDA5_2 Caspase ac 20.9 94 0.002 22.6 2.4 23 48-70 23-45 (88)
41 cd01671 CARD Caspase activatio 20.9 97 0.0021 19.4 2.2 23 48-70 17-39 (80)
42 TIGR00568 alkb DNA alkylation 20.8 1.5E+02 0.0032 22.8 3.5 49 58-106 4-57 (169)
43 PRK12880 3-oxoacyl-(acyl carri 20.6 30 0.00065 28.4 -0.2 18 97-114 323-340 (353)
44 PF04943 Pox_F11: Poxvirus F11 20.2 86 0.0019 27.9 2.4 35 57-91 322-356 (366)
45 smart00114 CARD Caspase recrui 20.1 83 0.0018 20.7 1.8 22 48-69 24-45 (88)
No 1
>KOG4176|consensus
Probab=97.58 E-value=1.1e-05 Score=67.97 Aligned_cols=81 Identities=20% Similarity=0.053 Sum_probs=75.8
Q ss_pred HHHhhhccccccCH-HHHHHHHHhHHHHHhhhhcCCcccccccccc-ccccccccccccc---cchhhhcCCCCccCCCC
Q psy7743 48 KILQGVDQMSLFSH-EECLVLERNIDEVSSLAEQGQYKPCTVDRAP-LRNKYFFGEGYTY---GSQLVRKGLGNERLYPE 122 (133)
Q Consensus 48 kV~~gI~Q~slFs~-eeC~~IE~kIdeVV~~aekGlYrehTVDRAP-LRnKYFFGeGYTY---G~Ql~~rGpGqERLY~~ 122 (133)
.+++.+.|..+|.. .+|.+.++-.++|...++..++.+|+.+.++ .|++.+++|+||| |+..+....|.+.+|..
T Consensus 97 ~i~~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~~~~gk~R~~iq~G~~f~y~~ 176 (323)
T KOG4176|consen 97 AIKGFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFTYQESGKHREVIQLGYPFDYRT 176 (323)
T ss_pred ccccccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhcccccccceeeccccceeeeecCceeccCC
Confidence 68888889999987 8899999999999999999999999999999 9999999999999 99999999999999999
Q ss_pred CCCCcc
Q psy7743 123 GEVDPR 128 (133)
Q Consensus 123 GeVD~I 128 (133)
..+|+.
T Consensus 177 ~~~d~~ 182 (323)
T KOG4176|consen 177 NNVDES 182 (323)
T ss_pred Cccccc
Confidence 888774
No 2
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=65.33 E-value=3 Score=29.53 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=30.7
Q ss_pred cccccCHHHHHHHHHhHHHHHhhhhcCCccccccc
Q psy7743 55 QMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVD 89 (133)
Q Consensus 55 Q~slFs~eeC~~IE~kIdeVV~~aekGlYrehTVD 89 (133)
+..+|.+.+...||.+|++-|...-+=+...|+|-
T Consensus 11 KVEfFEA~~l~~LEkkIneqIe~NkailL~V~sVs 45 (68)
T PF10750_consen 11 KVEFFEANDLQTLEKKINEQIEHNKAILLEVHSVS 45 (68)
T ss_pred eeeEEecchHHHHHHHHHHHHhcCceEEEEEEEec
Confidence 56789999999999999999998888888888774
No 3
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=60.30 E-value=8.2 Score=25.51 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=22.7
Q ss_pred ccCHHHHHHHHHhHHHHHhhhhcCCcccccccccc
Q psy7743 58 LFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAP 92 (133)
Q Consensus 58 lFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAP 92 (133)
|||++|.+.|++.|.++ +..-.......||+..|
T Consensus 1 iLs~~~~~~l~~~l~~~-~~~t~~~i~Vvtv~~~~ 34 (119)
T PF04536_consen 1 ILSQEERERLNQALAKL-EKKTGVQIVVVTVPSLP 34 (119)
T ss_dssp -S-HHHHHHHHHHHHHH-HHHC--EEEEEEESB-T
T ss_pred CCCHHHHHHHHHHHHHH-HHhhCCEEEEEEEcCCC
Confidence 69999999999999998 55555555666776653
No 4
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=56.95 E-value=9.2 Score=27.06 Aligned_cols=23 Identities=4% Similarity=0.296 Sum_probs=20.8
Q ss_pred HHHHhhhccccccCHHHHHHHHH
Q psy7743 47 QKILQGVDQMSLFSHEECLVLER 69 (133)
Q Consensus 47 qkV~~gI~Q~slFs~eeC~~IE~ 69 (133)
++|.+...|..|||.++|++|.+
T Consensus 19 ~~l~d~L~s~~ILt~~d~EeI~~ 41 (84)
T cd08810 19 DRHFDYLRSKRILTRDDCEEISC 41 (84)
T ss_pred HHHHHHHHHcCCCCHHHHHHHhc
Confidence 36899999999999999999976
No 5
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=52.75 E-value=12 Score=26.41 Aligned_cols=25 Identities=4% Similarity=0.030 Sum_probs=21.9
Q ss_pred HHHHhhhccccccCHHHHHHHHHhH
Q psy7743 47 QKILQGVDQMSLFSHEECLVLERNI 71 (133)
Q Consensus 47 qkV~~gI~Q~slFs~eeC~~IE~kI 71 (133)
++|.+...|..|||++++++|.+.-
T Consensus 19 ~~l~d~L~q~~VLt~~d~EeI~~~~ 43 (86)
T cd08785 19 SRLTPYLRQCKVLDEQDEEEVLSSP 43 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCCC
Confidence 3689999999999999999998753
No 6
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=46.71 E-value=35 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=27.9
Q ss_pred HHHHHHhhhccccccCHHHHHHHHHhHHHHHhh
Q psy7743 45 LRQKILQGVDQMSLFSHEECLVLERNIDEVSSL 77 (133)
Q Consensus 45 ~~qkV~~gI~Q~slFs~eeC~~IE~kIdeVV~~ 77 (133)
+.++|.+-+..+-+.|.+|+..|+.+|+.+-.+
T Consensus 79 ~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~ 111 (118)
T TIGR01837 79 FDERVEQALNRLNIPSREEIEALSAKIEQLAVQ 111 (118)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999987654
No 7
>KOG0225|consensus
Probab=45.10 E-value=52 Score=29.75 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=34.7
Q ss_pred CCCCcc---cchHHHHHHHHH------HHhhhccccccCHHHHHHHHHhHHHHHhhhh
Q psy7743 31 SPYDIG---QSKHHARELRQK------ILQGVDQMSLFSHEECLVLERNIDEVSSLAE 79 (133)
Q Consensus 31 ~~~~~~---~~e~ear~~~qk------V~~gI~Q~slFs~eeC~~IE~kIdeVV~~ae 79 (133)
|-+|++ ...+|+.+.||+ ++.-|--..|-+.+|...||.+|+..|+.+-
T Consensus 293 SmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav 350 (394)
T KOG0225|consen 293 SMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAV 350 (394)
T ss_pred ccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 344553 356677766652 4555556678999999999999998887664
No 8
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=42.88 E-value=22 Score=24.87 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=20.6
Q ss_pred HHHhhhccccccCHHHHHHHHHh
Q psy7743 48 KILQGVDQMSLFSHEECLVLERN 70 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~k 70 (133)
.|.+..-|..+||.+|+++|.++
T Consensus 18 ~ild~L~~~gvlt~~~~e~I~~~ 40 (86)
T cd08323 18 YIMDHMISDGVLTLDEEEKVKSK 40 (86)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcC
Confidence 58999999999999999999763
No 9
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=41.24 E-value=79 Score=20.88 Aligned_cols=43 Identities=21% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhccccccCHHHHHHHHHhHHHHHhhhhcCCccc
Q psy7743 42 ARELRQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKP 85 (133)
Q Consensus 42 ar~~~qkV~~gI~Q~slFs~eeC~~IE~kIdeVV~~aekGlYre 85 (133)
++.+|+.+..=..+ .-|+.+++..|+-.+.|++.++=+=-|..
T Consensus 8 i~~~r~~~~~~~~~-~~~~~~~~~~~~lav~E~~~Nav~H~~~~ 50 (125)
T PF13581_consen 8 IREARAFLREFLER-LGLPEEDRDDLELAVSEALTNAVEHGYPG 50 (125)
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44444444444334 78999999999999999999886655554
No 10
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=39.51 E-value=15 Score=24.38 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHhhhccccccCHHHHHHHHHhHHHHH
Q psy7743 39 KHHARELRQKILQGVDQMSLFSHEECLVLERNIDEVS 75 (133)
Q Consensus 39 e~ear~~~qkV~~gI~Q~slFs~eeC~~IE~kIdeVV 75 (133)
.+||+||-|.-++.|-|..===.++.+++|+|=..+|
T Consensus 3 ~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 3 RAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp ------------THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998864222344555555533333
No 11
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=38.28 E-value=1.1e+02 Score=21.46 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=25.5
Q ss_pred HHHHHHHhhhcc--ccccCHHHHHHHHHhHHHHH-hhhhcCCcccccccccccccccccccccc
Q psy7743 44 ELRQKILQGVDQ--MSLFSHEECLVLERNIDEVS-SLAEQGQYKPCTVDRAPLRNKYFFGEGYT 104 (133)
Q Consensus 44 ~~~qkV~~gI~Q--~slFs~eeC~~IE~kIdeVV-~~aekGlYrehTVDRAPLRnKYFFGeGYT 104 (133)
.+|.+|++.+.. +.-++.+|...+-+++=..+ ..-+. .+||||+..|
T Consensus 36 ~~r~~~~~~l~~~G~gr~~~ee~~~~~~~~l~aLs~~Lg~--------------~~~l~Gd~pT 85 (126)
T cd03211 36 QKQREARRKLKAIGWDDKTLDQVIEEVDQCCQALSQRLGT--------------QPYFFGDQPT 85 (126)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHCC--------------CCCCCCCCCc
Confidence 344444444432 34478888766544443333 33222 3699998876
No 12
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=38.19 E-value=38 Score=25.75 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHhhhccccccCHHHHHHHHHhHHH
Q psy7743 38 SKHHARELRQKILQGVDQMSLFSHEECLVLERNIDE 73 (133)
Q Consensus 38 ~e~ear~~~qkV~~gI~Q~slFs~eeC~~IE~kIde 73 (133)
.-..++ +|+.+|+...+|+++..+++++.+++
T Consensus 106 N~~~~~----kvL~~~~~k~~l~~~~~~~~~~~l~~ 137 (139)
T PF12243_consen 106 NLKSVR----KVLKNWSKKKILDPEEYEEIEASLKE 137 (139)
T ss_pred HHHHHH----HHHHHHHHcCCCCHHHHHHHHHHHhc
Confidence 455667 99999999999999999999887764
No 13
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=36.76 E-value=27 Score=24.54 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=25.9
Q ss_pred HHHHHHhhhhcccccccccCCCCCCcccchHHHHHHHHHHHhhhccccccCHH
Q psy7743 10 KCQVVEQNLKLKNRYSRNQRSSPYDIGQSKHHARELRQKILQGVDQMSLFSHE 62 (133)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ear~~~qkV~~gI~Q~slFs~e 62 (133)
|| +.-.++++|.|=- .-.-...+||+|+.+++...+.+...|+.-
T Consensus 22 kC-~CG~~l~vk~~rI-------l~~~~~~~eA~eiVrklQ~e~~G~~~ft~a 66 (68)
T PF09082_consen 22 KC-VCGKTLKVKERRI-------LARAENAEEASEIVRKLQEEKYGGTQFTTA 66 (68)
T ss_dssp EE-TTTEEEE--SSS--------BS--SSHHHHHHHHHHHSS---S-TTSS-T
T ss_pred Ee-cCCCeeeeeeEEE-------EEecCCHHHHHHHHHHHHHHhccccccccC
Confidence 46 6666677765411 112247889999999999999999999853
No 14
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=36.06 E-value=32 Score=25.23 Aligned_cols=24 Identities=4% Similarity=0.120 Sum_probs=20.2
Q ss_pred hhccccccCHHHHHHHHHhHHHHH
Q psy7743 52 GVDQMSLFSHEECLVLERNIDEVS 75 (133)
Q Consensus 52 gI~Q~slFs~eeC~~IE~kIdeVV 75 (133)
-|-++-+|+++||.+|.+.+..+|
T Consensus 99 ~I~GiWf~~~~d~~ri~~~l~~lv 122 (122)
T PF06058_consen 99 EIYGIWFYDDEDRQRIYNLLQRLV 122 (122)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHH-
T ss_pred eEEEEEEEeHHHHHHHHHHHHhcC
Confidence 467788999999999999988775
No 15
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=35.76 E-value=36 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.5
Q ss_pred HHHhhhccccccCHHHHHHHHH
Q psy7743 48 KILQGVDQMSLFSHEECLVLER 69 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~ 69 (133)
.|.+...+..+||.+|++.|..
T Consensus 20 ~ild~L~~~~vlt~~e~e~I~~ 41 (85)
T PF00619_consen 20 DILDHLLSRGVLTEEEYEEIRS 41 (85)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHT
T ss_pred HHHHHHHHCCCCCHHHHHHHHc
Confidence 6778888999999999999976
No 16
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=33.76 E-value=34 Score=24.47 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=21.1
Q ss_pred cccCHHHHHHHHHhHHHHHhhhhcCCccccccccc--cc--cccccccccccccc
Q psy7743 57 SLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRA--PL--RNKYFFGEGYTYGS 107 (133)
Q Consensus 57 slFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRA--PL--RnKYFFGeGYTYG~ 107 (133)
.++|++|..+|=+.|++-........-..+++... -+ ...+++|.+|.|+.
T Consensus 7 ~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~ 61 (194)
T PF13532_consen 7 NFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSG 61 (194)
T ss_dssp TSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTC
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCC
Confidence 35677777777666664433221111112222111 11 11245678888875
No 17
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=33.46 E-value=36 Score=23.83 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.2
Q ss_pred HHHhhhccccccCHHHHHHHHHh
Q psy7743 48 KILQGVDQMSLFSHEECLVLERN 70 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~k 70 (133)
.|.+...+..+|+.+||+.|.++
T Consensus 27 ~ilD~Ll~~~Vlt~ee~e~I~~~ 49 (94)
T cd08329 27 PILDSLLSANVITEQEYDVIKQK 49 (94)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcC
Confidence 47889999999999999999764
No 18
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=32.69 E-value=1.2e+02 Score=23.06 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHHhhhcc--ccccCHHHHHHHHHhHHHHHhhhhc
Q psy7743 37 QSKHHARELRQKILQGVDQ--MSLFSHEECLVLERNIDEVSSLAEQ 80 (133)
Q Consensus 37 ~~e~ear~~~qkV~~gI~Q--~slFs~eeC~~IE~kIdeVV~~aek 80 (133)
.-|++|-+++.+|...+.+ +--|+-+|...|=..+|+|+...+.
T Consensus 54 ~lE~eaD~i~~~i~~~L~~~fitP~dReDi~~L~~~lD~I~D~i~~ 99 (216)
T TIGR00153 54 EIEHEADEIKREIRLNLEKGAFLPNDRRDLLELAELLDEILDSLEH 99 (216)
T ss_pred HHHHHHHHHHHHHHHhCcccccCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999998877 4457778888888889998876653
No 19
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=32.48 E-value=77 Score=23.68 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHhhhcccc---ccCHHHHHHHHHhHHHHHhhh
Q psy7743 39 KHHARELRQKILQGVDQMS---LFSHEECLVLERNIDEVSSLA 78 (133)
Q Consensus 39 e~ear~~~qkV~~gI~Q~s---lFs~eeC~~IE~kIdeVV~~a 78 (133)
+...|.+|+....-|+... ..|.|++..++..|+.+....
T Consensus 107 k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~ 149 (165)
T PF01765_consen 107 KVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKY 149 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHH
Confidence 3456777887777777765 489999999999998887643
No 20
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=32.31 E-value=1.2e+02 Score=18.45 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhccccccCHHHHHHHHHhHHHHHhh
Q psy7743 40 HHARELRQKILQGVDQMSLFSHEECLVLERNIDEVSSL 77 (133)
Q Consensus 40 ~ear~~~qkV~~gI~Q~slFs~eeC~~IE~kIdeVV~~ 77 (133)
.++..+|++...-+.+. =|++.++-++-..+|.++..
T Consensus 4 ~~Ie~~R~~L~~~~~~~-~l~~~~vl~~Sq~LD~lI~~ 40 (45)
T PF09388_consen 4 EEIEELRQELNELAEKK-GLTDPEVLELSQELDKLINE 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHC-CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 56778899999988888 55666778888888888754
No 21
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=32.22 E-value=60 Score=22.00 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.2
Q ss_pred cccCHHHHHHHHHhHHHHH
Q psy7743 57 SLFSHEECLVLERNIDEVS 75 (133)
Q Consensus 57 slFs~eeC~~IE~kIdeVV 75 (133)
.+|++++|+.|.+.|+++.
T Consensus 11 ~~l~~~~~~~l~~~~~~~~ 29 (211)
T PF05721_consen 11 NVLSPEEVERLREELDRLD 29 (211)
T ss_dssp TSS-HHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHH
Confidence 5899999999999999983
No 22
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.60 E-value=4.2 Score=33.70 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=44.4
Q ss_pred HhhhccccccCHHHHHHHHHhHHHHHhhhhcCCccccccccccccccc
Q psy7743 50 LQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKY 97 (133)
Q Consensus 50 ~~gI~Q~slFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRnKY 97 (133)
++.-|-++||+---..+||-+.=+-....++++-+-|++|.|-||++-
T Consensus 55 Cd~tWN~~IfeR~~~~~Iep~lleal~~NDa~larr~afdla~lRr~~ 102 (203)
T COG4332 55 CDYTWNISIFERLNVSDIEPDLLEALMANDAALARRFAFDLAILRRNN 102 (203)
T ss_pred cCCccchhhhhccCcccCCHHHHHHHHcCCHHHHHHHHhhHHHHHhcc
Confidence 566788999999999999999999999999999999999999999964
No 23
>PF11439 CesA: Type III secretion system filament chaperone CesA; InterPro: IPR021545 This bacterial family of proteins with unknown function are the product of the gene Z5138. ; PDB: 2LHK_A 1XOU_B.
Probab=31.36 E-value=19 Score=26.79 Aligned_cols=8 Identities=75% Similarity=1.273 Sum_probs=6.8
Q ss_pred cccccccc
Q psy7743 100 GEGYTYGS 107 (133)
Q Consensus 100 GeGYTYG~ 107 (133)
=||||||.
T Consensus 59 iegyt~ge 66 (95)
T PF11439_consen 59 IEGYTYGE 66 (95)
T ss_dssp HCCCCCSH
T ss_pred Hhhcccch
Confidence 48999996
No 24
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=29.04 E-value=1.4e+02 Score=22.14 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHhhhcc--ccccCHHHHHHHHHhHHHHHhhhh
Q psy7743 37 QSKHHARELRQKILQGVDQ--MSLFSHEECLVLERNIDEVSSLAE 79 (133)
Q Consensus 37 ~~e~ear~~~qkV~~gI~Q--~slFs~eeC~~IE~kIdeVV~~ae 79 (133)
.-|++|-+++++|..-+-+ +.-|+-++.-.+=..+|+|+...+
T Consensus 51 ~lE~~aD~i~~~i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~ 95 (214)
T PF01865_consen 51 ELEHEADEIKREIREELYKSFITPFDREDILRLISSLDDIADYIE 95 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999888876 234778888888888888887654
No 25
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=27.29 E-value=57 Score=22.16 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.4
Q ss_pred HHHhhhccccccCHHHHHHHHH
Q psy7743 48 KILQGVDQMSLFSHEECLVLER 69 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~ 69 (133)
.|.++..+..+++.++++.|.+
T Consensus 19 ~ilD~L~~~~Vit~e~~~~I~a 40 (82)
T cd08330 19 PILDKLHGKKVITQEQYSEVRA 40 (82)
T ss_pred HHHHHHHHCCCCCHHHHHHHHc
Confidence 4689999999999999999865
No 26
>PRK05408 oxidative damage protection protein; Provisional
Probab=26.22 E-value=23 Score=25.96 Aligned_cols=33 Identities=27% Similarity=0.566 Sum_probs=22.6
Q ss_pred HHhhhccccccCHHHHHHHHHhHHHHHhhhhcCCcccccccccccccccccccccc
Q psy7743 49 ILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYT 104 (133)
Q Consensus 49 V~~gI~Q~slFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRnKYFFGeGYT 104 (133)
++=.=...++++++.-+-||+.. .|||||+|+.
T Consensus 48 mLINE~rLn~~dp~ar~~L~~qM-----------------------ekF~F~~~~~ 80 (90)
T PRK05408 48 MLINEKRLNMMDPEARKFLEEQM-----------------------EKFLFGEGAV 80 (90)
T ss_pred hhhhhccCCCCCHHHHHHHHHHH-----------------------HHHhcCCCcc
Confidence 33344567778888777777654 3799999864
No 27
>PF01913 FTR: Formylmethanofuran-tetrahydromethanopterin formyltransferase; InterPro: IPR022667 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5H_E 1M5S_C 1FTR_C 2FHJ_B 2FHK_D.
Probab=25.85 E-value=25 Score=27.65 Aligned_cols=13 Identities=38% Similarity=0.991 Sum_probs=8.8
Q ss_pred cccccccccchhh
Q psy7743 98 FFGEGYTYGSQLV 110 (133)
Q Consensus 98 FFGeGYTYG~Ql~ 110 (133)
|||+||.+-+++.
T Consensus 123 ~FGDG~q~sk~~~ 135 (144)
T PF01913_consen 123 FFGDGYQISKEIG 135 (144)
T ss_dssp GGGTT--EEEEET
T ss_pred CccCCceEEEEEC
Confidence 8999999877654
No 28
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=25.58 E-value=1.2e+02 Score=23.27 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhcccc---ccCHHHHHHHHHhHHHHHhh
Q psy7743 40 HHARELRQKILQGVDQMS---LFSHEECLVLERNIDEVSSL 77 (133)
Q Consensus 40 ~ear~~~qkV~~gI~Q~s---lFs~eeC~~IE~kIdeVV~~ 77 (133)
...|.+|+...+-|+... ..|.|++...|..|..+...
T Consensus 122 v~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd~ 162 (179)
T cd00520 122 VAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDE 162 (179)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Confidence 346677788888887664 37999999999988877654
No 29
>PF14182 YgaB: YgaB-like protein
Probab=25.51 E-value=1.2e+02 Score=22.01 Aligned_cols=15 Identities=53% Similarity=0.791 Sum_probs=13.3
Q ss_pred hhhhHHHHHHhhhhc
Q psy7743 6 SELYKCQVVEQNLKL 20 (133)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (133)
|||=.||-+|.+|+-
T Consensus 21 sElERCqeIE~eL~~ 35 (79)
T PF14182_consen 21 SELERCQEIEKELKE 35 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999999864
No 30
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.73 E-value=67 Score=22.19 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=20.1
Q ss_pred HHHhhhccccccCHHHHHHHHH
Q psy7743 48 KILQGVDQMSLFSHEECLVLER 69 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~ 69 (133)
.|.+..-|..||+.++.++|++
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~ 41 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQA 41 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHc
Confidence 6889999999999999999986
No 31
>PF10991 DUF2815: Protein of unknown function (DUF2815); InterPro: IPR022595 This entry is represented by Bacteriophage APSE-1, protein 50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.65 E-value=1e+02 Score=24.38 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHHhHHHHHhhhhcCCccccccc---cccccc
Q psy7743 63 ECLVLERNIDEVSSLAEQGQYKPCTVD---RAPLRN 95 (133)
Q Consensus 63 eC~~IE~kIdeVV~~aekGlYrehTVD---RAPLRn 95 (133)
-+++|++.|++++..+-.+++.-..+. +.|||.
T Consensus 43 t~~~I~~Ai~~a~~~~~~~k~~~~~~~~~~k~plrD 78 (181)
T PF10991_consen 43 TIAAIKAAIEAAIEEGWGNKWKGKKIPANLKLPLRD 78 (181)
T ss_pred HHHHHHHHHHHHHHhcccccccccccCccccccccC
Confidence 367999999999999887888766666 666665
No 32
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=24.22 E-value=75 Score=20.17 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.1
Q ss_pred ccCHHHHHHHHHhHHH
Q psy7743 58 LFSHEECLVLERNIDE 73 (133)
Q Consensus 58 lFs~eeC~~IE~kIde 73 (133)
|=+++..+.||++||+
T Consensus 20 l~d~~~me~Ieerie~ 35 (40)
T PF13040_consen 20 LNDKEAMEKIEERIEE 35 (40)
T ss_pred HcCHHHHHHHHHHHHH
Confidence 5588999999999987
No 33
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=23.51 E-value=1.4e+02 Score=28.62 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHHhhhccccccCHHHHHHHHHhHHHHHhhhhcCCccccccccccccccccccccccccchhhhcCCCC
Q psy7743 37 QSKHHARELRQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGN 116 (133)
Q Consensus 37 ~~e~ear~~~qkV~~gI~Q~slFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRnKYFFGeGYTYG~Ql~~rGpGq 116 (133)
-.++|.+.+|+.+-.+=----+.-+.+-+.+...++.|+.++..-.=-.-.=-|.|| .+|=| +.-+--||.
T Consensus 356 IteeEV~~v~d~lga~~~Davvlva~~~~~~~~a~~~V~~Ra~~ai~gvpeETR~a~------~DGtT---~yLRPlPGa 426 (631)
T COG2511 356 ITEEEVEAVRDALGAGEEDAVVLVAGEEERAKRALEAVIERAKEAIEGVPEETRGAL------PDGTT---VYLRPLPGA 426 (631)
T ss_pred CCHHHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcCCCHhhccCC------CCCCc---eeecCCCCc
Confidence 488899988888865543333334444488888889999888754433333345555 34433 344667999
Q ss_pred ccCCCCCCCCcc
Q psy7743 117 ERLYPEGEVDPR 128 (133)
Q Consensus 117 ERLY~~GeVD~I 128 (133)
-|.||.-||-||
T Consensus 427 aRMYPETDIPpi 438 (631)
T COG2511 427 ARMYPETDIPPI 438 (631)
T ss_pred cccCCcCCCCCc
Confidence 999999988775
No 34
>PF04362 Iron_traffic: Bacterial Fe(2+) trafficking; InterPro: IPR007457 The protein represented by this entry, YggX, serves to protect Fe-S clusters from oxidative damage []. The effect is two-fold: proteins that rely on Fe-S clusters do not become inactivated, and the release of free iron and hydrogen peroxide--a DNA damaging agent--is prevented. These observations are consistent with the hypothesis that YggX chelates free iron, and recent experiments show that YggX can indeed bind Fe(II) in vitro and in vivo []. Furthermore, YggX has a positive effect on the action of at least one Fe(II)-responsive protein. The combined actions of YggX is reminiscent of iron trafficking proteins [], and YggX is therefore proposed to play a role in Fe(II) trafficking []. In Escherichia coli, YggX was shown to be under the transcriptional control of the redox-sensing SoxRS system []. ; GO: 0005506 iron ion binding; PDB: 1YHD_A 1T07_A 1XS8_A.
Probab=23.22 E-value=29 Score=25.26 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=22.6
Q ss_pred HHHHhhhccccccCHHHHHHHHHhHHHHHhhhhcCCcccccccccccccccccccccc
Q psy7743 47 QKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYT 104 (133)
Q Consensus 47 qkV~~gI~Q~slFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRnKYFFGeGYT 104 (133)
|-++=.=.+.++++++.-+-|++..+ |||||+|++
T Consensus 46 QTmLINE~rLn~~dp~~R~~L~~qM~-----------------------~Flf~~~~~ 80 (88)
T PF04362_consen 46 QTMLINEYRLNMMDPEARKFLEEQME-----------------------KFLFGEGQD 80 (88)
T ss_dssp HHHHHHHHT--TTSHHHHHHHHHHHH-----------------------HHTTTTTSS
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHH-----------------------HHhcCCCCC
Confidence 33444445677888888777777654 789998865
No 35
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=23.07 E-value=85 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=22.7
Q ss_pred Hhhhcc-ccccCHHHHHHHHHhHHHHHhh
Q psy7743 50 LQGVDQ-MSLFSHEECLVLERNIDEVSSL 77 (133)
Q Consensus 50 ~~gI~Q-~slFs~eeC~~IE~kIdeVV~~ 77 (133)
.+|--- ..+||++||+.|.+.|++++..
T Consensus 27 ~dGyvvl~~vls~eev~~lr~~i~~~~~~ 55 (277)
T TIGR02408 27 RDGFLLLENLFSDDEVAALLAEVERMTRD 55 (277)
T ss_pred HCCEEECcccCCHHHHHHHHHHHHHHHhc
Confidence 356443 4899999999999999999864
No 36
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=22.81 E-value=2.1e+02 Score=23.27 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=24.7
Q ss_pred HHHHhhhccccccCHHHHHHHHHhHHHHHhhh
Q psy7743 47 QKILQGVDQMSLFSHEECLVLERNIDEVSSLA 78 (133)
Q Consensus 47 qkV~~gI~Q~slFs~eeC~~IE~kIdeVV~~a 78 (133)
.+...-+...-++|.+|.+.|++.|.+-|..+
T Consensus 256 ~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a 287 (300)
T PF00676_consen 256 KRFRRYLIEEGVLTEEELDAIEAEIKAEVEEA 287 (300)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 35666666778999999999999998887765
No 37
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=22.56 E-value=29 Score=29.48 Aligned_cols=17 Identities=53% Similarity=0.857 Sum_probs=14.2
Q ss_pred ccccccccccchhhhcC
Q psy7743 97 YFFGEGYTYGSQLVRKG 113 (133)
Q Consensus 97 YFFGeGYTYG~Ql~~rG 113 (133)
.-||-|+|+|+.+.+.|
T Consensus 307 ~~fG~Gltwg~~~~r~~ 323 (323)
T COG0332 307 EAFGGGLTWGAALVRWG 323 (323)
T ss_pred EeecCcceeeeEEEEeC
Confidence 56999999999887754
No 38
>PF10957 DUF2758: Protein of unknown function (DUF2758); InterPro: IPR020296 Cse60 is expressed during sporulation in Bacillus subtilis. Transcription commences around 2h after the start of sporulation and had an absolute requirement for the transcription factor sigmaE. Maximal expression of cse60 further depended on the DNA-binding protein SpoIIID. Cse60 is an acidic product of only 60 residues, whose function is not known [].
Probab=22.22 E-value=67 Score=21.72 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.6
Q ss_pred cccccCHHHHHHHHHhHHHHHhh
Q psy7743 55 QMSLFSHEECLVLERNIDEVSSL 77 (133)
Q Consensus 55 Q~slFs~eeC~~IE~kIdeVV~~ 77 (133)
|..+|+.+.-.+||+.|++-++.
T Consensus 3 kVKvFd~~he~dLe~~vN~fL~~ 25 (60)
T PF10957_consen 3 KVKVFDEEHEKDLEDQVNDFLAK 25 (60)
T ss_pred EEEEEehhhHHHHHHHHHHHHHh
Confidence 67899999999999999999865
No 39
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.55 E-value=84 Score=21.69 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.3
Q ss_pred HHHhhhccccccCHHHHHHHHHh
Q psy7743 48 KILQGVDQMSLFSHEECLVLERN 70 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~k 70 (133)
.|.+..-|..+||+++.+.|++.
T Consensus 24 ~v~~~L~~~gvlt~~~~~~I~~~ 46 (90)
T cd08332 24 ELLIHLLQKDILTDSMAESIMAK 46 (90)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcC
Confidence 58888889999999999999874
No 40
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.92 E-value=94 Score=22.61 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHhhhccccccCHHHHHHHHHh
Q psy7743 48 KILQGVDQMSLFSHEECLVLERN 70 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~k 70 (133)
.|.++.-+.-||+.++.+.|++.
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa 45 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAA 45 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHh
Confidence 78999999999999999999884
No 41
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.90 E-value=97 Score=19.45 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHhhhccccccCHHHHHHHHHh
Q psy7743 48 KILQGVDQMSLFSHEECLVLERN 70 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~k 70 (133)
.|.+-..+..+||.+|++.|...
T Consensus 17 ~il~~L~~~~vlt~~e~~~i~~~ 39 (80)
T cd01671 17 DVLDHLLSDGVLTEEEYEKIRSE 39 (80)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcC
Confidence 57777788899999999988754
No 42
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=20.80 E-value=1.5e+02 Score=22.77 Aligned_cols=49 Identities=20% Similarity=0.145 Sum_probs=25.5
Q ss_pred ccCHHHHHHHHHhHHHHHhhhhc----CCc-ccccccccccccccccccccccc
Q psy7743 58 LFSHEECLVLERNIDEVSSLAEQ----GQY-KPCTVDRAPLRNKYFFGEGYTYG 106 (133)
Q Consensus 58 lFs~eeC~~IE~kIdeVV~~aek----GlY-rehTVDRAPLRnKYFFGeGYTYG 106 (133)
-|+.++.+.|-++|.++...+.= -.| +.++|-|.-++.--++|+||.|.
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~gk~~~~pr~~~~~l~W~~~g~~Y~ 57 (169)
T TIGR00568 4 YFAFNAQEQLIRDINDVASQDPFRQYVTPGGYTMSVAMTNLGKLGWTTHGQGYL 57 (169)
T ss_pred ccChHHHHHHHHHHHHHhhcCCCcCeEecCCeEeeehhhhcccceEEcCCCccc
Confidence 36677777777788877754210 111 23444444433334665554443
No 43
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.59 E-value=30 Score=28.39 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.3
Q ss_pred ccccccccccchhhhcCC
Q psy7743 97 YFFGEGYTYGSQLVRKGL 114 (133)
Q Consensus 97 YFFGeGYTYG~Ql~~rGp 114 (133)
-=||-|||+|+.|-+-||
T Consensus 323 ~~~G~G~s~g~~ll~~~~ 340 (353)
T PRK12880 323 SAFGAGLSWGSAVLNFKD 340 (353)
T ss_pred EEEchhhhheEeEEEECC
Confidence 358999999999988875
No 44
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=20.24 E-value=86 Score=27.91 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=30.2
Q ss_pred cccCHHHHHHHHHhHHHHHhhhhcCCccccccccc
Q psy7743 57 SLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRA 91 (133)
Q Consensus 57 slFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRA 91 (133)
++-+.+.|+-|+.=|-..|++.+.|.||+.-|++-
T Consensus 322 slLd~g~~e~i~~yIl~~i~~~e~~~~r~~L~~nL 356 (366)
T PF04943_consen 322 SLLDDGQNEYIDRYILHKISRSESGMYRNELVQNL 356 (366)
T ss_pred hhCChHHHHHHHHHHHHHHhhchhhhhHHHHHHHH
Confidence 34558899999999999999999999999887763
No 45
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=20.07 E-value=83 Score=20.72 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=19.7
Q ss_pred HHHhhhccccccCHHHHHHHHH
Q psy7743 48 KILQGVDQMSLFSHEECLVLER 69 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~ 69 (133)
.|.+...+..+|+.+|++.|.+
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~ 45 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKA 45 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHc
Confidence 4888999999999999999876
Done!