Query psy7743
Match_columns 133
No_of_seqs 13 out of 15
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 17:41:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v4p_A Alanyl-tRNA synthetase; 53.9 9.4 0.00032 26.2 2.8 36 58-95 49-84 (157)
2 1tke_A Threonyl-tRNA synthetas 45.0 15 0.0005 26.9 2.7 64 58-124 111-177 (224)
3 2kw7_A Conserved domain protei 41.8 24 0.00081 24.5 3.3 54 54-117 23-80 (157)
4 3ga8_A HTH-type transcriptiona 40.9 21 0.00073 22.5 2.7 28 56-83 44-71 (78)
5 2lyd_A Decapping protein 1; DC 40.1 17 0.00058 26.2 2.4 26 52-77 108-133 (134)
6 1g6u_A Domain swapped dimer; d 37.6 23 0.00078 22.7 2.4 18 57-74 15-32 (48)
7 2p1h_A APAF-1, apoptotic prote 37.2 18 0.0006 23.0 1.9 23 48-70 26-48 (94)
8 2lhk_A L0052; chaperone, type 32.9 11 0.00038 27.5 0.4 8 100-107 59-66 (107)
9 3kew_A DHHA1 domain protein; s 29.5 35 0.0012 25.9 2.8 35 58-94 133-167 (241)
10 2olt_A Hypothetical protein; s 23.4 1.8E+02 0.0061 20.6 5.5 44 37-80 57-102 (227)
11 2kc2_A Talin-1, F1; FERM, adhe 22.8 20 0.0007 25.9 0.3 22 77-101 106-127 (128)
12 1xou_B Z5138 gene product; coi 22.5 12 0.00042 26.7 -0.9 8 100-107 59-66 (95)
13 2opw_A Phyhd1 protein; double- 22.2 63 0.0022 23.4 2.9 28 50-77 14-42 (291)
14 2rdq_A 1-deoxypentalenic acid 22.1 64 0.0022 23.2 2.9 31 48-78 28-59 (288)
15 3lrd_A Major ampullate spidroi 21.7 2.4E+02 0.0082 20.8 5.9 39 38-76 12-50 (137)
16 3pvh_A UPF0603 protein AT1G547 21.7 65 0.0022 22.5 2.7 57 54-117 20-78 (153)
17 2qkl_A DCP1 protein, SPBC3B9.2 21.6 38 0.0013 24.2 1.6 26 51-76 101-126 (127)
18 1r4g_A RNA polymerase alpha su 20.7 27 0.00094 22.9 0.6 11 2-12 22-32 (53)
No 1
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=53.93 E-value=9.4 Score=26.18 Aligned_cols=36 Identities=22% Similarity=0.100 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHHhHHHHHhhhhcCCccccccccccccc
Q psy7743 58 LFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRN 95 (133)
Q Consensus 58 lFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRn 95 (133)
-+|++|.++||+.++++|...-+ .....++++-+..
T Consensus 49 ~~t~e~l~~IE~~~n~~I~~~~p--i~~~~~~~~eA~~ 84 (157)
T 1v4p_A 49 KPSDEEIREIERLANEKVKENAP--IKIYELPREEAEK 84 (157)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCB--CEEEEEEHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCHHHHHH
Confidence 47899999999999999987665 4445566655544
No 2
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=44.99 E-value=15 Score=26.91 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHHhHHHHHhhhhcCCccccccccccccccccccccccccchhhhc---CCCCccCCCCCC
Q psy7743 58 LFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRK---GLGNERLYPEGE 124 (133)
Q Consensus 58 lFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRnKYFFGeGYTYG~Ql~~r---GpGqERLY~~Ge 124 (133)
-||+||.++||+.++++|...-+ .....|++.-+... |=-.|..|-..|-.. ....=|+|.-|+
T Consensus 111 ~~t~edl~~IE~~m~~iI~~~~p--i~~~~~~~~eA~~~-f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~ 177 (224)
T 1tke_A 111 TLTQEDVEALEKRMHELAEKNYD--VIKKKVSWHEARET-FANRGESYKVSILDENIAHDDKPGLYFHEE 177 (224)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCB--CEEEECCHHHHHHH-HHHTTCHHHHHHHHHHSCTTCCCEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC--EEEEEecHHHHHHH-HHHcCCchHHHHhccccCCCCeeEEEEeCC
Confidence 37899999999999999976544 33445555554432 211234554444432 122335555555
No 3
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=41.81 E-value=24 Score=24.54 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=38.0
Q ss_pred ccccccCHHHHHHHHHhHHHHHhhhhcCCcccccccccccccccccccccc---ccchh-hhcCCCCc
Q psy7743 54 DQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYT---YGSQL-VRKGLGNE 117 (133)
Q Consensus 54 ~Q~slFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRnKYFFGeGYT---YG~Ql-~~rGpGqE 117 (133)
....+||+++.+.|++.|.++-. ...+.....||+..+ |++ |+-++ .+-|.|+.
T Consensus 23 D~a~~Ls~~~~~~L~~~l~~~e~-~t~~qi~Vv~v~~l~---------g~~~~~~A~~~f~~wgig~~ 80 (157)
T 2kw7_A 23 DEAGLLSNAQEEVMNGRLRAIRS-SHAVEFAVVTLPSIG---------DAPLEDFTLKLARQWGVGNE 80 (157)
T ss_dssp ECSSCSCHHHHHHHHHHHHHHHH-HTCCEEEEEEESBCT---------TCCHHHHHHHHHHHHSTTTT
T ss_pred cccccCCHHHHHHHHHHHHHHHH-hhCCeEEEEEEcCCC---------CCCHHHHHHHHHHHhCCCCC
Confidence 45678999999999999998644 455777888887754 444 66555 34466653
No 4
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=40.94 E-value=21 Score=22.53 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=23.5
Q ss_pred ccccCHHHHHHHHHhHHHHHhhhhcCCc
Q psy7743 56 MSLFSHEECLVLERNIDEVSSLAEQGQY 83 (133)
Q Consensus 56 ~slFs~eeC~~IE~kIdeVV~~aekGlY 83 (133)
-.+||+|+..++++.++++-.+.++|+-
T Consensus 44 E~~~~~e~~~~~~~~~~~f~~~vd~~l~ 71 (78)
T 3ga8_A 44 ESIMNKEESDAFMAQVKAFRASVNAETV 71 (78)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEECHHHHHHHHHHHHHHHHHHhccCC
Confidence 4689999999999999999999888864
No 5
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=40.10 E-value=17 Score=26.20 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=22.6
Q ss_pred hhccccccCHHHHHHHHHhHHHHHhh
Q psy7743 52 GVDQMSLFSHEECLVLERNIDEVSSL 77 (133)
Q Consensus 52 gI~Q~slFs~eeC~~IE~kIdeVV~~ 77 (133)
.|.++-+|+++||..|.+.+.+++..
T Consensus 108 ~I~GiWf~~~~d~~~i~~~l~~l~~~ 133 (134)
T 2lyd_A 108 RIRGFWFYNSEECDRISGLVNGLLKS 133 (134)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred cEEEEEecChHHHHHHHHHHHHHHhc
Confidence 47777899999999999999998863
No 6
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.57 E-value=23 Score=22.70 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=14.7
Q ss_pred cccCHHHHHHHHHhHHHH
Q psy7743 57 SLFSHEECLVLERNIDEV 74 (133)
Q Consensus 57 slFs~eeC~~IE~kIdeV 74 (133)
.=||+||.+.+|+.+..+
T Consensus 15 egfspeelaaleselqal 32 (48)
T 1g6u_A 15 EGFSPEELAALESELQAL 32 (48)
T ss_dssp TTCSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 349999999999887654
No 7
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=37.17 E-value=18 Score=23.04 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=20.0
Q ss_pred HHHhhhccccccCHHHHHHHHHh
Q psy7743 48 KILQGVDQMSLFSHEECLVLERN 70 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~k 70 (133)
.|.+...+..+||.+|++.|.+.
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~~ 48 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRNE 48 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTS
T ss_pred HHHHHHHHCCCCCHHHHHHHHcC
Confidence 57788888999999999999874
No 8
>2lhk_A L0052; chaperone, type III secretion system; NMR {Escherichia coli}
Probab=32.91 E-value=11 Score=27.46 Aligned_cols=8 Identities=75% Similarity=1.273 Sum_probs=6.8
Q ss_pred cccccccc
Q psy7743 100 GEGYTYGS 107 (133)
Q Consensus 100 GeGYTYG~ 107 (133)
=||||||.
T Consensus 59 iegytyge 66 (107)
T 2lhk_A 59 IEGYTYGE 66 (107)
T ss_dssp CSSSCCCC
T ss_pred Hhhccchh
Confidence 48999996
No 9
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=29.52 E-value=35 Score=25.86 Aligned_cols=35 Identities=6% Similarity=0.074 Sum_probs=24.9
Q ss_pred ccCHHHHHHHHHhHHHHHhhhhcCCcccccccccccc
Q psy7743 58 LFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLR 94 (133)
Q Consensus 58 lFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLR 94 (133)
-+|++|.++||+.++++|...-+=. ...++++-++
T Consensus 133 ~lt~e~l~~IE~~vn~~I~~~~pV~--~~~~~~~eA~ 167 (241)
T 3kew_A 133 FLDEKTIREAEKEANRLIFENLEVK--SYAPSKKELK 167 (241)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCBEE--EECCCTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEE--EEEcCHHHHH
Confidence 4789999999999999997764433 3344554444
No 10
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=23.43 E-value=1.8e+02 Score=20.63 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHHHhhhcccc--ccCHHHHHHHHHhHHHHHhhhhc
Q psy7743 37 QSKHHARELRQKILQGVDQMS--LFSHEECLVLERNIDEVSSLAEQ 80 (133)
Q Consensus 37 ~~e~ear~~~qkV~~gI~Q~s--lFs~eeC~~IE~kIdeVV~~aek 80 (133)
+-|++|.+++.+|..-+.+.. -|+.++...+=..+|+|+..++.
T Consensus 57 ~~E~~aD~l~~~I~~~L~~~~~~P~dredi~~L~~~lD~I~D~~~~ 102 (227)
T 2olt_A 57 LAEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIANKAKD 102 (227)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999988876532 37888898888888888876653
No 11
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=22.75 E-value=20 Score=25.89 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=13.5
Q ss_pred hhhcCCccccccccccccccccccc
Q psy7743 77 LAEQGQYKPCTVDRAPLRNKYFFGE 101 (133)
Q Consensus 77 ~aekGlYrehTVDRAPLRnKYFFGe 101 (133)
..|.|.=-. |.-=||-||||.+
T Consensus 106 L~EQGI~e~---~tllLRrKfffsd 127 (128)
T 2kc2_A 106 LREQGVEEH---ETLLLRRKFFYSD 127 (128)
T ss_dssp HHHHTCCTT---SEEEEEESSCCCC
T ss_pred HHHcCCCCC---CEEEEEEEEeccC
Confidence 344554322 3346999999965
No 12
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=22.49 E-value=12 Score=26.74 Aligned_cols=8 Identities=75% Similarity=1.273 Sum_probs=6.7
Q ss_pred cccccccc
Q psy7743 100 GEGYTYGS 107 (133)
Q Consensus 100 GeGYTYG~ 107 (133)
=||||||.
T Consensus 59 iegyt~ge 66 (95)
T 1xou_B 59 IEGYTYGE 66 (95)
T ss_dssp HHHHHHSH
T ss_pred HHhhcchh
Confidence 48999996
No 13
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=22.18 E-value=63 Score=23.37 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=22.5
Q ss_pred Hhhhc-cccccCHHHHHHHHHhHHHHHhh
Q psy7743 50 LQGVD-QMSLFSHEECLVLERNIDEVSSL 77 (133)
Q Consensus 50 ~~gI~-Q~slFs~eeC~~IE~kIdeVV~~ 77 (133)
.+|.- =..+||+|+|+.+.+.+++++..
T Consensus 14 ~dGyvvl~~~l~~e~v~~l~~~~~~~~~~ 42 (291)
T 2opw_A 14 QDGFLVLEGFLSAEECVAMQQRIGEIVAE 42 (291)
T ss_dssp HHSEEEETTSSCHHHHHHHHHHHHHHHHT
T ss_pred hCCEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 45533 23689999999999999999976
No 14
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=22.09 E-value=64 Score=23.21 Aligned_cols=31 Identities=6% Similarity=-0.010 Sum_probs=24.7
Q ss_pred HHHhhhccc-cccCHHHHHHHHHhHHHHHhhh
Q psy7743 48 KILQGVDQM-SLFSHEECLVLERNIDEVSSLA 78 (133)
Q Consensus 48 kV~~gI~Q~-slFs~eeC~~IE~kIdeVV~~a 78 (133)
=-.+|.--+ .+|++++|+.+.+.|++++...
T Consensus 28 f~~dGyvvl~~~l~~e~v~~l~~~~~~~~~~~ 59 (288)
T 2rdq_A 28 YEEHGYLFLRNVLDRDLVKTVAEQMREGLVAL 59 (288)
T ss_dssp HHHHSEEEECSCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 445676554 4999999999999999998753
No 15
>3lrd_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT D40N/ double-mutant, structural protein; HET: PGE; 2.15A {Euprosthenops australis} PDB: 3lr6_A* 2lpj_A 3lr2_A 2lpi_A 4fbs_A 3lr8_A*
Probab=21.72 E-value=2.4e+02 Score=20.82 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHhhhccccccCHHHHHHHHHhHHHHHh
Q psy7743 38 SKHHARELRQKILQGVDQMSLFSHEECLVLERNIDEVSS 76 (133)
Q Consensus 38 ~e~ear~~~qkV~~gI~Q~slFs~eeC~~IE~kIdeVV~ 76 (133)
..+.|...-..+.++|-+...|+.++++++..-=|.++.
T Consensus 12 ~~~~A~~Fi~~f~~~i~~s~~F~~~q~~Dm~sI~~ti~~ 50 (137)
T 3lrd_A 12 NPGLAENFMNSFMQGLSSMPGFTASQLDNMSTIAQSMVQ 50 (137)
T ss_dssp SHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHHHHH
Confidence 467788888899999999999999999999875554443
No 16
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A
Probab=21.67 E-value=65 Score=22.53 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=39.7
Q ss_pred ccccccCHHHHHHHHHhHHHHHhhhhcCCcccccccccccccccccc-ccccccchhhh-cCCCCc
Q psy7743 54 DQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFG-EGYTYGSQLVR-KGLGNE 117 (133)
Q Consensus 54 ~Q~slFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRnKYFFG-eGYTYG~Ql~~-rGpGqE 117 (133)
.+-.++|+++.+.|+++|.++-. .-.+.-..+||+.-. +| .-.+|+.+|-+ -|+|+.
T Consensus 20 D~A~vLs~~~~~~l~~~l~~le~-~t~~qi~Vvtv~~~~------~g~~i~~~A~~l~~~wgiG~~ 78 (153)
T 3pvh_A 20 DDAGVLSRVTKSDLKKLLSDLEY-RKKLRLNFITVRKLT------SKADAFEYADQVLEKWYPSIE 78 (153)
T ss_dssp ETTCCSCHHHHHHHHHHHHHHHH-HHCCEEEEEEESCCS------SSCCHHHHHHHHHHHHSCSHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHH-hhCCEEEEEEEcCCC------CCCCHHHHHHHHHHHhCCCCc
Confidence 45678999999999999998654 455788999998642 11 23346666543 367754
No 17
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=21.61 E-value=38 Score=24.16 Aligned_cols=26 Identities=15% Similarity=0.085 Sum_probs=22.3
Q ss_pred hhhccccccCHHHHHHHHHhHHHHHh
Q psy7743 51 QGVDQMSLFSHEECLVLERNIDEVSS 76 (133)
Q Consensus 51 ~gI~Q~slFs~eeC~~IE~kIdeVV~ 76 (133)
+-|-++=+|+++||..|.+.+..++.
T Consensus 101 ~~i~GiWf~~~~d~~~i~~~l~~ll~ 126 (127)
T 2qkl_A 101 QHVVGLWMFDPNDMSRIFNIVKESLL 126 (127)
T ss_dssp TEEEEEEESSTHHHHHHHHHHHHHTC
T ss_pred CcEEEEEEEchHHHHHHHHHHHHHHh
Confidence 45778889999999999999988764
No 18
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=20.70 E-value=27 Score=22.88 Aligned_cols=11 Identities=55% Similarity=0.999 Sum_probs=9.4
Q ss_pred hhhhhhhhHHH
Q psy7743 2 AAYLSELYKCQ 12 (133)
Q Consensus 2 ~~~~~~~~~~~ 12 (133)
+||+.+|++|.
T Consensus 22 ~sYi~~L~~Ck 32 (53)
T 1r4g_A 22 AAYVKSLSKCK 32 (53)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHcc
Confidence 58999999994
Done!