Query psy7743
Match_columns 133
No_of_seqs 13 out of 15
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 17:41:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7743.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7743hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v4pa_ d.67.1.2 (A:) Hypothet 43.4 8.2 0.0006 25.1 2.8 41 59-103 50-90 (151)
2 d2a1xa1 b.82.2.9 (A:43-338) Ph 34.9 14 0.0011 24.5 3.1 29 50-78 21-50 (296)
3 d1a8la1 c.47.1.2 (A:1-119) Pro 31.1 10 0.00072 24.9 1.6 50 39-88 6-62 (119)
4 d1ge9a_ d.67.3.1 (A:) Ribosome 28.2 42 0.0031 23.1 4.7 39 39-77 127-165 (184)
5 d1xoub_ a.231.1.2 (B:) EspA ch 26.4 4.4 0.00032 26.9 -0.9 8 100-107 58-65 (84)
6 d1ftra1 d.58.33.1 (A:1-148) Fo 23.9 9 0.00066 27.3 0.4 14 97-110 125-138 (148)
7 d1tkea2 d.67.1.1 (A:63-224) Th 22.8 16 0.0012 23.7 1.4 50 58-110 49-98 (162)
8 d1dd5a_ d.67.3.1 (A:) Ribosome 22.7 50 0.0036 22.7 4.2 39 39-77 124-165 (184)
9 d2fzta1 a.46.3.1 (A:1-78) Hypo 22.0 19 0.0014 23.5 1.6 16 64-79 3-18 (78)
10 d1cy5a_ a.77.1.3 (A:) Apoptoti 21.0 24 0.0017 20.9 1.9 23 48-70 24-46 (93)
11 d1r4ga_ a.8.5.1 (A:) RNA polym 20.6 13 0.00094 22.9 0.6 11 2-12 22-32 (53)
12 d2ozla1 c.36.1.11 (A:1-361) E1 20.1 40 0.0029 25.2 3.4 31 48-78 290-320 (361)
13 d1m5sa1 d.58.33.1 (A:1-145) Fo 20.1 12 0.00088 26.6 0.4 13 97-109 122-134 (145)
No 1
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=43.43 E-value=8.2 Score=25.06 Aligned_cols=41 Identities=27% Similarity=0.236 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHhHHHHHhhhhcCCccccccccccccccccccccc
Q psy7743 59 FSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGY 103 (133)
Q Consensus 59 Fs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRnKYFFGeGY 103 (133)
+++|+.++||+.++++|... -......+++.-+... ||+-|
T Consensus 50 ~t~e~l~~iE~~~n~~I~~~--~~v~~~~~~~~ea~~~--~~~~~ 90 (151)
T d1v4pa_ 50 PSDEEIREIERLANEKVKEN--APIKIYELPREEAEKM--FGEDM 90 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHT--CBCEEEEEEHHHHHHH--HGGGG
T ss_pred chhHHHHHHHHHHHHhhhcc--cccceEEeeccccccc--ccccc
Confidence 58899999999999999764 4445556666555543 45433
No 2
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.91 E-value=14 Score=24.49 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=23.4
Q ss_pred Hhhhccc-cccCHHHHHHHHHhHHHHHhhh
Q psy7743 50 LQGVDQM-SLFSHEECLVLERNIDEVSSLA 78 (133)
Q Consensus 50 ~~gI~Q~-slFs~eeC~~IE~kIdeVV~~a 78 (133)
.+|.--+ .+||+++|+.|.+.|++++...
T Consensus 21 ~~Gyvvi~~~l~~~~~~~l~~~~~~~~~~~ 50 (296)
T d2a1xa1 21 ENGFLVIKNLVPDADIQRFRNEFEKICRKE 50 (296)
T ss_dssp HHSEEEETTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HCCEEEccCcCCHHHHHHHHHHHHHHHhhc
Confidence 4676544 5999999999999999988753
No 3
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=31.09 E-value=10 Score=24.94 Aligned_cols=50 Identities=14% Similarity=0.344 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhhhcc---ccccCH----HHHHHHHHhHHHHHhhhhcCCcccccc
Q psy7743 39 KHHARELRQKILQGVDQ---MSLFSH----EECLVLERNIDEVSSLAEQGQYKPCTV 88 (133)
Q Consensus 39 e~ear~~~qkV~~gI~Q---~slFs~----eeC~~IE~kIdeVV~~aekGlYrehTV 88 (133)
++..+.++..+.+.+.. +.+|.. +-|.++++-+++|.+..+|-.+.++..
T Consensus 6 d~~~~~~~~~~~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~ 62 (119)
T d1a8la1 6 DADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDF 62 (119)
T ss_dssp HHHHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEecc
Confidence 45555566666677765 677752 348899999999999999988877644
No 4
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=28.16 E-value=42 Score=23.10 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhhhccccccCHHHHHHHHHhHHHHHhh
Q psy7743 39 KHHARELRQKILQGVDQMSLFSHEECLVLERNIDEVSSL 77 (133)
Q Consensus 39 e~ear~~~qkV~~gI~Q~slFs~eeC~~IE~kIdeVV~~ 77 (133)
+...|..|+...+-|+-+.-.|.|++-.++.+|+.+...
T Consensus 127 Kv~iRniR~~~~~~lKk~k~iseD~~k~~~~~iqkltd~ 165 (184)
T d1ge9a_ 127 RVRVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDK 165 (184)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 344677788877778777778999999999888877653
No 5
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli [TaxId: 562]}
Probab=26.43 E-value=4.4 Score=26.89 Aligned_cols=8 Identities=75% Similarity=1.273 Sum_probs=6.7
Q ss_pred cccccccc
Q psy7743 100 GEGYTYGS 107 (133)
Q Consensus 100 GeGYTYG~ 107 (133)
=||||||.
T Consensus 58 iegyt~ge 65 (84)
T d1xoub_ 58 IEGYTYGE 65 (84)
T ss_dssp HHHHHHSH
T ss_pred HHhhcchH
Confidence 48999996
No 6
>d1ftra1 d.58.33.1 (A:1-148) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=23.89 E-value=9 Score=27.33 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=11.2
Q ss_pred ccccccccccchhh
Q psy7743 97 YFFGEGYTYGSQLV 110 (133)
Q Consensus 97 YFFGeGYTYG~Ql~ 110 (133)
=|||+||.+-+.+.
T Consensus 125 r~FGDG~q~sk~~~ 138 (148)
T d1ftra1 125 SFFGDGYQEEDELD 138 (148)
T ss_dssp HGGGTTCCEEEEET
T ss_pred eEecCCceEEEEEC
Confidence 48999999877653
No 7
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=22.76 E-value=16 Score=23.70 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=29.6
Q ss_pred ccCHHHHHHHHHhHHHHHhhhhcCCccccccccccccccccccccccccchhh
Q psy7743 58 LFSHEECLVLERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLV 110 (133)
Q Consensus 58 lFs~eeC~~IE~kIdeVV~~aekGlYrehTVDRAPLRnKYFFGeGYTYG~Ql~ 110 (133)
-++.||...||.+++++|....+=..++.|.+.|- +.|...++.|-..+.
T Consensus 49 ~~~~edl~~ie~~m~~ii~~~~~~~~~~~s~~~a~---~~~~~~~~~~k~~~~ 98 (162)
T d1tkea2 49 TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEAR---ETFANRGESYKVSIL 98 (162)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHH---HHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCceEEEechHHHH---HHHHHhhcchhhhee
Confidence 45777888888888888776655444444444332 445555555554443
No 8
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=22.66 E-value=50 Score=22.69 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhhhcccc---ccCHHHHHHHHHhHHHHHhh
Q psy7743 39 KHHARELRQKILQGVDQMS---LFSHEECLVLERNIDEVSSL 77 (133)
Q Consensus 39 e~ear~~~qkV~~gI~Q~s---lFs~eeC~~IE~kIdeVV~~ 77 (133)
+...|..|+...+-|+.+. ..|.|++-.+|..|+.+...
T Consensus 124 Kv~iR~iR~~~~~~lk~~~k~~~iseD~~k~~~~~iq~ltd~ 165 (184)
T d1dd5a_ 124 KIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDE 165 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Confidence 3446677888877777654 68999999999888877654
No 9
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=21.95 E-value=19 Score=23.53 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.1
Q ss_pred HHHHHHhHHHHHhhhh
Q psy7743 64 CLVLERNIDEVSSLAE 79 (133)
Q Consensus 64 C~~IE~kIdeVV~~ae 79 (133)
+.+||.+||+.|++-+
T Consensus 3 I~EiErkIDeaIE~ED 18 (78)
T d2fzta1 3 IDEIERKIDEAIEKED 18 (78)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5789999999998653
No 10
>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1, APAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.97 E-value=24 Score=20.86 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=19.1
Q ss_pred HHHhhhccccccCHHHHHHHHHh
Q psy7743 48 KILQGVDQMSLFSHEECLVLERN 70 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~k 70 (133)
.|.+-..+..+||++|++.|.+.
T Consensus 24 ~vl~~L~~~~vlt~~e~e~I~~~ 46 (93)
T d1cy5a_ 24 YIMDHMISDGFLTISEEEKVRNE 46 (93)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCHHHHHHHHcc
Confidence 57777788899999999999753
No 11
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=20.58 E-value=13 Score=22.86 Aligned_cols=11 Identities=55% Similarity=0.999 Sum_probs=9.5
Q ss_pred hhhhhhhhHHH
Q psy7743 2 AAYLSELYKCQ 12 (133)
Q Consensus 2 ~~~~~~~~~~~ 12 (133)
+||+.+|++|.
T Consensus 22 ~aYi~~L~~Ck 32 (53)
T d1r4ga_ 22 AAYVKSLSKCK 32 (53)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhcc
Confidence 68999999994
No 12
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.12 E-value=40 Score=25.16 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=22.5
Q ss_pred HHHhhhccccccCHHHHHHHHHhHHHHHhhh
Q psy7743 48 KILQGVDQMSLFSHEECLVLERNIDEVSSLA 78 (133)
Q Consensus 48 kV~~gI~Q~slFs~eeC~~IE~kIdeVV~~a 78 (133)
+.++=+....++|++|.+.|+++|+..|..|
T Consensus 290 ~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A 320 (361)
T d2ozla1 290 LLKDRMVNSNLASVEELKEIDVEVRKEIEDA 320 (361)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555667899999999988776666543
No 13
>d1m5sa1 d.58.33.1 (A:1-145) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=20.09 E-value=12 Score=26.60 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=10.5
Q ss_pred ccccccccccchh
Q psy7743 97 YFFGEGYTYGSQL 109 (133)
Q Consensus 97 YFFGeGYTYG~Ql 109 (133)
=|||+||.+-+.+
T Consensus 122 r~FGDG~q~sk~~ 134 (145)
T d1m5sa1 122 KFFADGMESETQI 134 (145)
T ss_dssp HGGGTTCCEEEEE
T ss_pred eEecCCceEEEEE
Confidence 3899999987755
Done!