RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7743
(133 letters)
>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 388
Score = 33.3 bits (76), Expect = 0.026
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 33 YDIGQSKHHARELRQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKP 85
YDIGQ + + + ++KILQ + + EE +E + EV SL + +K
Sbjct: 57 YDIGQQQINVEDEKRKILQSIKK------EENSSIEDVLKEVKSLKNELAHKK 103
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 30.9 bits (71), Expect = 0.15
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 32 PYDIGQSKHHAREL-RQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKP 85
DI S HAR L +Q IL S EE + +DE+ E G+++
Sbjct: 34 EEDIAGSIAHARMLAKQGIL---------SEEEAEKILAGLDEILEEIEAGKFEF 79
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 29.7 bits (67), Expect = 0.43
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 69 RNIDEVSSLAEQGQYKP 85
R +DEV L EQ YKP
Sbjct: 104 RGVDEVQQLLEQAVYKP 120
>gnl|CDD|130300 TIGR01233, lacG, 6-phospho-beta-galactosidase. This enzyme is part
of the tagatose-6-phosphate pathway of
galactose-6-phosphate degradation [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 467
Score = 29.7 bits (66), Expect = 0.46
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 77 LAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPE--GEVDPR 128
L + Y + YG +R + R++P GEV+ +
Sbjct: 37 LEDNYWYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEK 90
>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 28.9 bits (66), Expect = 0.80
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 99 FGEGYTYGSQLVR 111
FG G T+G+ LVR
Sbjct: 305 FGGGLTWGAALVR 317
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 28.7 bits (65), Expect = 0.88
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 99 FGEGYTYGSQLVRKG 113
FG G T+G+ LVR G
Sbjct: 309 FGGGLTWGAALVRWG 323
>gnl|CDD|236931 PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA
hydratase; Provisional.
Length = 675
Score = 28.3 bits (64), Expect = 1.2
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 99 FGEGYTYGSQLVRKGLGNERLYPEGEVDP 127
G +TY S R+ L N+ + EGEV+P
Sbjct: 105 IGTLFTYAS-KGRRELPNDTVLVEGEVEP 132
>gnl|CDD|135998 PRK06673, PRK06673, DNA polymerase III subunit beta; Validated.
Length = 376
Score = 28.1 bits (62), Expect = 1.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 46 RQKILQGVDQMSLFSHE 62
RQ++LQGVD+ SL + E
Sbjct: 265 RQRMLQGVDRSSLLASE 281
>gnl|CDD|117118 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III C terminal. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 90
Score = 26.7 bits (60), Expect = 1.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 99 FGEGYTYGSQLVR 111
FG G T+G+ ++R
Sbjct: 77 FGAGLTWGAAVLR 89
>gnl|CDD|223822 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation,
ribosomal structure and biogenesis].
Length = 691
Score = 27.2 bits (61), Expect = 3.0
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 44 ELRQKILQGVDQMSLFSHEECLVLERNIDEVSSLAE 79
E + IL+ +++++ + E ++EV++L E
Sbjct: 222 ERKAIILEQIEELASKLGGVADIDEDLLEEVTALVE 257
>gnl|CDD|192151 pfam08781, DP, Transcription factor DP. DP forms a heterodimer
with E2F and regulates genes involved in cell cycle
progression. The transcriptional activity of E2F is
inhibited by the retinoblastoma protein which binds to
the E2F-DP heterodimer and negatively regulates the
G1-S transition.
Length = 141
Score = 26.1 bits (58), Expect = 3.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 2 AAYLSELYKCQVVEQNLKLKNRYSRNQRSSP 32
A L EL QV +NL +N+ + + P
Sbjct: 21 QAQLQELILQQVALKNLVQRNQELESSGNVP 51
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed.
Length = 307
Score = 26.2 bits (59), Expect = 5.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 44 ELRQKILQGVDQMSLFSHEECLVLERN-IDEVSSLAEQGQYKPCTVDRA 91
EL ++I Q VDQM LE+ ++EV +L +G RA
Sbjct: 201 ELYERINQRVDQM----------LEQGLLEEVRALLARGYLPDLPAMRA 239
>gnl|CDD|237245 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 325
Score = 26.0 bits (58), Expect = 7.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 97 YFFGEGYTYGSQLVRKG 113
Y FG G T+ + LV+ G
Sbjct: 309 YGFGAGLTWAALLVKWG 325
>gnl|CDD|240558 cd13115, POLO_box_Plk4_2, Second (cryptic) polo-box domain (PBD) of
polo-like kinase 4 (Plk4/Sak). The polo-like Ser/Thr
kinases (Plk1, Plk2/Snk, Plk3/Prk/Fnk, Plk4/Sak, and the
inactive kinase Plk5) play various roles in cytokinesis
and mitosis. At their C-terminus, they contain a
tandemly repeated polo-box domain (in the case of Plk4,
a tandem repeat of cryptic PBDs is found in the middle
of the protein followed by a C-terminal single repeat),
which appears to be involved in autoinhibition and in
mediating the subcellular localization. The latter may
be controlled via interactions between the polo-box
domain and phospho-peptide motifs. The phosphopeptide
binding site is formed at the interface between the two
tandemly repeated PBDs. The PBDs of Plk4/Sak appear
unique in participating in homodimer interactions,
though it is not clear whether and how they interact
with phosphopeptides.
Length = 108
Score = 25.0 bits (55), Expect = 9.2
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 60 SHEECLVLERNIDEVSSLAEQGQYKPCTVDRAP 92
+ CL LE + + S + P + R P
Sbjct: 76 CRQHCLRLESALSSLESSSGSNSCFPVIIGRRP 108
>gnl|CDD|143446 cd07128, ALDH_MaoC-N, N-terminal domain of the monoamine oxidase C
dehydratase. The N-terminal domain of the MaoC
dehydratase, a monoamine oxidase regulatory protein.
Orthologs of MaoC include PaaZ (Escherichia coli) and
PaaN (Pseudomonas putida), which are putative
ring-opening enzymes of the aerobic phenylacetic acid
(PA) catabolic pathway. The C-terminal domain of MaoC
has sequence similarity to enoyl-CoA hydratase. Also
included in this CD is a novel Burkholderia xenovorans
LB400 ALDH of the aerobic benzoate oxidation (box)
pathway. This pathway involves first the synthesis of a
CoA thio-esterified aromatic acid, with subsequent
dihydroxylation and cleavage steps, yielding the CoA
thio-esterified aliphatic aldehyde,
3,4-dehydroadipyl-CoA semialdehyde, which is further
converted into its corresponding CoA acid by the
Burkholderia LB400 ALDH.
Length = 513
Score = 25.7 bits (57), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 103 YTYGSQLVRKGLGNERLYPEGEVDP 127
+ Y S L R+ L N EG+V+P
Sbjct: 105 FAYAS-LGRRELPNAHFLVEGDVEP 128
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 25.5 bits (56), Expect = 9.8
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 40 HHARELRQKILQGVDQMSL 58
+HAR +R++I+Q +++ SL
Sbjct: 144 NHARGIRKRIVQCIERASL 162
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.389
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,662,339
Number of extensions: 570905
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 26
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)