RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7743
(133 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.23
Identities = 20/134 (14%), Positives = 37/134 (27%), Gaps = 63/134 (47%)
Query: 43 RELRQKILQGVD----QMSLFSHEE----------------CLVLERNIDEV--SSL--- 77
E L+G D L + ++ +R D+ S+L
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 78 AEQGQYKPCTVDRAPLRNKYFFG-----EGY---------TYGS--------------QL 109
+G + + FG + Y TY +L
Sbjct: 149 VGEGNAQLVAI----------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 110 VRKGLGNERLYPEG 123
+R L E+++ +G
Sbjct: 199 IRTTLDAEKVFTQG 212
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A
1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A
1aos_A 1k62_A
Length = 468
Score = 28.3 bits (64), Expect = 0.83
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 28 QRSSPYDIGQSKHHAREL-RQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPC 86
QR S DI S +A+ L + IL + E + ++++S +G +
Sbjct: 34 QRLSEVDIQGSMAYAKALEKAGIL---------TKTELEKILSGLEKISEEWSKGVFVVK 84
Query: 87 TVD 89
D
Sbjct: 85 QSD 87
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 28.0 bits (63), Expect = 0.94
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 99 FGEGYTYGSQLVRK 112
FG GY+ G+ V+K
Sbjct: 378 FGAGYSAGTVFVQK 391
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 27.9 bits (63), Expect = 1.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 99 FGEGYTYGSQLVRKGLG 115
+G G +Y +Q+VR G
Sbjct: 319 YGAGLSYAAQVVRMPKG 335
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 27.9 bits (63), Expect = 1.0
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 99 FGEGYTYGSQLVR 111
FG G +Y Q +
Sbjct: 318 FGAGLSYAGQALL 330
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA
lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 28 QRSSPYDIGQSKHHAREL-RQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPC 86
R + DI S ++ L +L + EE LE ++ + +
Sbjct: 27 YRLAEQDIVGSVAWSKALVTVGVL---------TAEEQAQLEEALNVLLEDVRARPQQIL 77
Query: 87 TVD 89
D
Sbjct: 78 ESD 80
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 27.5 bits (62), Expect = 1.3
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 28 QRSSPYDIGQSKHHAREL-RQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKP 85
+ D+ Q++ HAR L +L S EE + + +D + E G +
Sbjct: 29 RALWREDLWQNRVHARMLHAVGLL---------SAEELEAILKGLDRIEEEIEAGTFPW 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.5
Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 41/134 (30%)
Query: 33 YDIGQSKHHAREL----RQKILQGVD-------QMSLFSHEEC--LVLERNIDEVS---- 75
++ G+ ++ +++ + D S+ S EE +++ ++ +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 76 -SLAEQGQYKPCTVDRA---PLRNKYFF-------------GEGYTYGSQLVRKGLGNE- 117
+L + + V + LR Y F Y Q R L N+
Sbjct: 69 WTLLSKQEE---MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDN 123
Query: 118 RLYPEGEVDPRLSL 131
+++ + V RL
Sbjct: 124 QVFAKYNV-SRLQP 136
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 26.0 bits (58), Expect = 4.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 99 FGEGYTYGSQLVRKGLGNER 118
+G G T+G+ L RK R
Sbjct: 338 YGSGATWGAALYRKPEEVNR 357
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 4.6
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 4/25 (16%)
Query: 68 ERNIDEVSSLAEQGQYKPCTVDRAP 92
E+ + L Q K D AP
Sbjct: 18 EKQ--ALKKL--QASLKLYADDSAP 38
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 25.6 bits (57), Expect = 5.2
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 5 LSELYKCQVVEQNLKLKNRYSRNQRSSPYD---IGQSKHHARELRQKILQGVDQMSLFSH 61
+S+L + Q+ + + + + PY + + + L +I Q QM
Sbjct: 177 MSDLRR----RQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQM----- 227
Query: 62 EECLVLERN-IDEVSSLAEQGQYKP 85
LE+ I EV +L +
Sbjct: 228 -----LEQGFIAEVEALHARSDLHA 247
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 25.6 bits (57), Expect = 5.7
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 14/64 (21%)
Query: 26 RNQRSSPYD---IGQSKHHARELRQKILQGVDQMSLFSHEECLVLERN-IDEVSSLAEQG 81
+ + PY + L Q+I Q QM L EV +L +G
Sbjct: 188 TSGDALPYQVHQFAIAPASRELLHQRIEQRFHQM----------LASGFEAEVRALFARG 237
Query: 82 QYKP 85
Sbjct: 238 DLHT 241
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 25.2 bits (56), Expect = 6.9
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 99 FGEGYTYGSQLVR 111
FG GY++ LV
Sbjct: 352 FGVGYSWAGCLVN 364
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 25.2 bits (56), Expect = 7.7
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 99 FGEGYTYGSQLVR 111
FG GY++ S +
Sbjct: 330 FGVGYSWASAALA 342
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 25.2 bits (56), Expect = 8.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 99 FGEGYTYGSQLVR 111
FG G T+GS L+
Sbjct: 308 FGGGLTWGSLLLT 320
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 25.1 bits (56), Expect = 8.5
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 99 FGEGYTYGSQLVRKGLG 115
FG G T+ + ++ G
Sbjct: 306 FGAGLTWAAAVLTWGGA 322
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.389
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,979,022
Number of extensions: 101686
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 17
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)