RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7743
         (133 letters)



>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 148

 Score = 26.2 bits (57), Expect = 1.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 99  FGEGYTYGSQLVR 111
           +G G +Y +Q+VR
Sbjct: 135 YGAGLSYAAQVVR 147


>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 459

 Score = 26.4 bits (57), Expect = 1.2
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 28 QRSSPYDIGQSKHHAREL-RQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKP 85
          +     D+  SK ++R L +  +L         +  E   +   +D+V+    QG +K 
Sbjct: 27 RHLWEVDVQGSKAYSRGLEKAGLL---------TKAEMDQILHGLDKVAEEWAQGTFKL 76


>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
           {Escherichia coli [TaxId: 562]}
          Length = 143

 Score = 26.0 bits (56), Expect = 1.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 99  FGEGYTYGSQLVR 111
           FG G+T+GS LVR
Sbjct: 130 FGGGFTWGSALVR 142


>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the
           r1128 polyketide biosynthetic pathway {Streptomyces sp.
           r1128 [TaxId: 140437]}
          Length = 153

 Score = 25.0 bits (54), Expect = 2.7
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 99  FGEGYTYGSQLVR 111
           FG G +Y  Q + 
Sbjct: 135 FGAGLSYAGQALL 147


>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH)
           {Thermus thermophilus [TaxId: 274]}
          Length = 149

 Score = 24.7 bits (53), Expect = 3.3
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 99  FGEGYTYGSQLVRKG 113
           FG G T+ + ++  G
Sbjct: 133 FGAGLTWAAAVLTWG 147


>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
          {Escherichia coli [TaxId: 562]}
          Length = 455

 Score = 24.9 bits (53), Expect = 3.9
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 10/59 (16%)

Query: 32 PYDIGQSKHHAREL-RQKILQGVDQMSLFSHEECLVLERNIDEVSSLAEQGQYKPCTVD 89
            DI  S   ++ L    +L         + EE   LE  ++ +         +    D
Sbjct: 29 EQDIVGSVAWSKALVTVGVL---------TAEEQAQLEEALNVLLEDVRARPQQILESD 78


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 24.3 bits (53), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 6   SELYKCQVVE 15
           SELYK +VV+
Sbjct: 306 SELYKYKVVK 315


>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 148

 Score = 23.6 bits (51), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 3  AYLSELYKCQVVEQNLKLKNRYSRNQRSSP 32
          + L EL   Q+  +NL  +NR++  Q S P
Sbjct: 23 SQLQELILQQIAFKNLVQRNRHAEQQASRP 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,726
Number of extensions: 19149
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 12
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.3 bits)