BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7748
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MGM|A Chain A, Crystal Structure Of Human Nudt16
pdb|3MGM|B Chain B, Crystal Structure Of Human Nudt16
Length = 200
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXX--XXXXXXXX 109
HA H +++A + +F R +LMQMRFDG +GFPGG VD +
Sbjct: 22 HACHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREE 81
Query: 110 XXXXXPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
++V+ +D H +++ HFYA ++ ++L +E GA + D+G+EVLG
Sbjct: 82 LGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGL 141
Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGN 195
VRVPLYT+ DG GLP FL +SFIG+
Sbjct: 142 VRVPLYTLRDGVGGLPTFLENSFIGS 167
>pdb|3COU|A Chain A, Crystal Structure Of Human Nudix Motif 16 (Nudt16)
pdb|2XSQ|A Chain A, Crystal Structure Of Human Nudix Motif 16 (Nudt16) In
Complex With Imp And Magnesium
Length = 217
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXX--XXXXXXXX 109
H H +++A + +F R +LMQMRFDG +GFPGG VD +
Sbjct: 43 HVCHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREE 102
Query: 110 XXXXXPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
++V+ +D H +++ HFYA ++ ++L +E GA + D+G+EVLG
Sbjct: 103 LGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGL 162
Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGN 195
VRVPLYT+ DG GLP FL +SFIG+
Sbjct: 163 VRVPLYTLRDGVGGLPTFLENSFIGS 188
>pdb|3KVH|A Chain A, Crystal Structure Of Human Protein Syndesmos (Nudt16-Like
Protein)
Length = 214
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 3/171 (1%)
Query: 52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXXXXXX 111
H+ H M++A N ++F R +VLMQMRFDG +GFPGG VD
Sbjct: 22 HSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVD--RRFWSLEDGLNRVLG 79
Query: 112 XXXPKYKVKDSDLVCIHYSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTV 170
++ ++D + H ++ +++ H YA Q+ + +E A+ S D+G+EVLG V
Sbjct: 80 LGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLV 139
Query: 171 RVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
RVPLYT D G P FL+++F+ E++ +AL A
Sbjct: 140 RVPLYTQKDRVGGFPNFLSNAFVSTAKCQLLFALKVLNMMPEEKLVEALAA 190
>pdb|2A8R|A Chain A, 2.45 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese In The Presence Of 7-Methyl-Gtp
pdb|2A8R|B Chain B, 2.45 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese In The Presence Of 7-Methyl-Gtp
pdb|2A8S|A Chain A, 2.45 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29, Manganese
And Gtp
pdb|2A8S|B Chain B, 2.45 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29, Manganese
And Gtp
Length = 212
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Query: 49 SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXX 107
GY HA H ++ A + K+F R +LM MRFDG +GFPGG VD +
Sbjct: 30 EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 89
Query: 108 XXXXX--XXPKYKVKDSDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGV 164
+V + D + +K + HFY +++ ++ IE A+ + D+G+
Sbjct: 90 LEEELGPALATVEVTEDDYRSSQVREHPQKXVTHFYIKELKLEEIERIEAEAVNAKDHGL 149
Query: 165 EVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
EV+G +RVPLYT+ D GLP FL ++FIGN ++I + L A
Sbjct: 150 EVMGLIRVPLYTLRDRVGGLPAFLXNNFIGNSKSQLLYALRSLKLLREDQIQEVLKA 206
>pdb|2A8P|A Chain A, 2.7 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese
pdb|2A8P|B Chain B, 2.7 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese
pdb|2A8Q|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese In The Presence Of 7-Methyl-Gdp
pdb|2A8Q|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese In The Presence Of 7-Methyl-Gdp
Length = 212
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Query: 49 SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXX 107
GY HA H ++ A + K+F R +LM MRFDG +GFPGG VD +
Sbjct: 30 EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 89
Query: 108 XXXXX--XXPKYKVKDSDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGV 164
+V + D + +K + HFY +++ ++ IE A+ + D+G+
Sbjct: 90 LEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGL 149
Query: 165 EVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
EV+G +RVPLYT+ D GLP FL ++FIGN ++I + L A
Sbjct: 150 EVMGLIRVPLYTLRDRVGGLPAFLXNNFIGNSKSQLLYALRSLKLLREDQIQEVLKA 206
>pdb|1U20|A Chain A, Crystal Structure Of Xenopus Laevis Nudix Hydrolase
Nuclear Snorna Decapping Protein X29
pdb|1U20|B Chain B, Crystal Structure Of Xenopus Laevis Nudix Hydrolase
Nuclear Snorna Decapping Protein X29
pdb|2A8T|A Chain A, 2.1 Angstrom Crystal Structure Of The Complex Between The
Nuclear U8 Snorna Decapping Nudix Hydrolase X29,
Manganese And M7g-Ppp-A
pdb|2A8T|B Chain B, 2.1 Angstrom Crystal Structure Of The Complex Between The
Nuclear U8 Snorna Decapping Nudix Hydrolase X29,
Manganese And M7g-Ppp-A
Length = 212
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Query: 49 SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXX 107
GY HA H ++ A + K+F R +LM MRFDG +GFPGG VD +
Sbjct: 30 EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 89
Query: 108 XXXXX--XXPKYKVKDSDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGV 164
+V + D + +K + HFY +++ ++ IE A+ + D+G+
Sbjct: 90 LEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGL 149
Query: 165 EVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
EV+G +RVPLYT+ D GLP FL ++FIGN ++I + L A
Sbjct: 150 EVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSLKLLREDQIQEVLKA 206
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans Complexed With A Magnesium Ion
Length = 194
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 41 DLKDDKYK---SGYHASHCMIFAYNDDKIFATYTARAN--VLMQMR------FDGYIGFP 89
D++ D + SG + + Y + T A+ VL+ +R G I FP
Sbjct: 10 DIQADPWALWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFP 69
Query: 90 GGLVDAGESP 99
GG +DAGE+P
Sbjct: 70 GGSLDAGETP 79
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 17/98 (17%)
Query: 12 GSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFA----------Y 61
GS A ++ + G P T EL L D +++ YH S + A Y
Sbjct: 88 GSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACY 147
Query: 62 NDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESP 99
D++ T +++ R GY+ P + +P
Sbjct: 148 EIDRVLTT-------MLRERRPGYLMLPADVAKKAATP 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,522,211
Number of Sequences: 62578
Number of extensions: 242636
Number of successful extensions: 387
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 12
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)