Query psy7748
Match_columns 232
No_of_seqs 230 out of 2063
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 17:46:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11762 nudE adenosine nucleo 99.9 2.1E-22 4.6E-27 160.4 14.2 147 10-181 7-160 (185)
2 PRK15009 GDP-mannose pyrophosp 99.9 2.5E-21 5.5E-26 154.4 11.1 169 18-211 7-191 (191)
3 PRK10729 nudF ADP-ribose pyrop 99.9 6.2E-21 1.3E-25 153.5 12.0 153 8-181 5-172 (202)
4 TIGR00052 nudix-type nucleosid 99.8 7.8E-21 1.7E-25 151.1 10.5 148 17-181 5-166 (185)
5 cd04679 Nudix_Hydrolase_20 Mem 99.8 1.9E-19 4.2E-24 134.3 12.1 110 51-181 2-116 (125)
6 cd04683 Nudix_Hydrolase_24 Mem 99.8 1.3E-18 2.9E-23 128.7 12.1 97 75-182 12-116 (120)
7 cd03430 GDPMH GDP-mannose glyc 99.8 2.6E-18 5.6E-23 131.5 12.1 109 51-180 12-132 (144)
8 cd04696 Nudix_Hydrolase_37 Mem 99.8 1.7E-18 3.6E-23 129.3 10.6 107 52-180 3-114 (125)
9 cd04700 DR1025_like DR1025 fro 99.8 2.7E-18 5.9E-23 131.1 11.9 113 48-181 10-126 (142)
10 cd03673 Ap6A_hydrolase Diadeno 99.8 1.7E-18 3.6E-23 129.8 9.8 113 52-181 2-117 (131)
11 PRK09438 nudB dihydroneopterin 99.8 3.1E-18 6.7E-23 131.6 11.0 110 50-181 6-130 (148)
12 cd03671 Ap4A_hydrolase_plant_l 99.8 7.3E-18 1.6E-22 129.4 12.3 118 50-183 2-134 (147)
13 cd04681 Nudix_Hydrolase_22 Mem 99.8 4.9E-18 1.1E-22 127.5 10.9 106 53-179 3-114 (130)
14 cd04691 Nudix_Hydrolase_32 Mem 99.8 5.6E-18 1.2E-22 125.1 11.0 90 75-180 12-108 (117)
15 PRK15434 GDP-mannose mannosyl 99.8 5.8E-18 1.3E-22 131.3 11.6 109 52-181 18-138 (159)
16 cd04684 Nudix_Hydrolase_25 Con 99.8 6.6E-18 1.4E-22 126.0 11.5 98 75-180 12-117 (128)
17 cd03674 Nudix_Hydrolase_1 Memb 99.8 8.7E-18 1.9E-22 127.7 12.1 111 51-180 2-123 (138)
18 cd04669 Nudix_Hydrolase_11 Mem 99.8 7.2E-18 1.6E-22 125.3 11.4 98 75-180 13-114 (121)
19 cd04678 Nudix_Hydrolase_19 Mem 99.8 9.6E-18 2.1E-22 125.7 11.9 111 51-180 2-117 (129)
20 cd04680 Nudix_Hydrolase_21 Mem 99.8 8.3E-18 1.8E-22 124.3 10.7 105 53-181 2-109 (120)
21 cd04687 Nudix_Hydrolase_28 Mem 99.8 1.6E-17 3.5E-22 124.4 12.4 112 51-180 1-121 (128)
22 cd04688 Nudix_Hydrolase_29 Mem 99.8 1.5E-17 3.2E-22 124.3 12.0 103 75-180 13-118 (126)
23 PLN02325 nudix hydrolase 99.8 1.5E-17 3.3E-22 127.3 12.3 114 49-181 7-126 (144)
24 cd04673 Nudix_Hydrolase_15 Mem 99.8 1.1E-17 2.4E-22 123.9 11.0 95 75-180 12-114 (122)
25 cd04692 Nudix_Hydrolase_33 Mem 99.8 2.5E-18 5.5E-23 131.5 7.8 118 51-186 2-133 (144)
26 cd04677 Nudix_Hydrolase_18 Mem 99.7 1.3E-17 2.8E-22 125.3 11.1 111 50-181 6-123 (132)
27 cd03428 Ap4A_hydrolase_human_l 99.7 8.2E-18 1.8E-22 126.2 9.8 113 51-181 2-116 (130)
28 cd04672 Nudix_Hydrolase_14 Mem 99.7 1.8E-17 3.8E-22 123.4 11.0 107 52-181 3-113 (123)
29 PRK15472 nucleoside triphospha 99.7 1.5E-17 3.2E-22 126.7 10.8 96 74-180 15-125 (141)
30 cd04671 Nudix_Hydrolase_13 Mem 99.7 3.4E-17 7.4E-22 122.0 11.7 103 53-179 2-109 (123)
31 cd04695 Nudix_Hydrolase_36 Mem 99.7 1.6E-17 3.4E-22 125.1 9.8 99 72-181 12-115 (131)
32 cd03672 Dcp2p mRNA decapping e 99.7 1.4E-17 3.1E-22 127.5 9.7 112 52-184 2-115 (145)
33 cd03675 Nudix_Hydrolase_2 Cont 99.7 7.4E-17 1.6E-21 121.7 13.1 97 75-181 12-112 (134)
34 PRK00714 RNA pyrophosphohydrol 99.7 6.8E-17 1.5E-21 125.3 12.5 119 49-183 6-138 (156)
35 cd02885 IPP_Isomerase Isopente 99.7 2.2E-17 4.7E-22 129.3 9.8 120 48-189 26-157 (165)
36 cd04697 Nudix_Hydrolase_38 Mem 99.7 2.5E-17 5.3E-22 123.2 9.6 104 53-181 2-113 (126)
37 cd03427 MTH1 MutT homolog-1 (M 99.7 8.6E-17 1.9E-21 121.7 12.5 94 75-180 13-111 (137)
38 cd04682 Nudix_Hydrolase_23 Mem 99.7 2.7E-17 5.8E-22 122.3 9.5 97 74-184 12-118 (122)
39 cd04664 Nudix_Hydrolase_7 Memb 99.7 2.5E-17 5.5E-22 123.5 9.4 110 53-181 3-119 (129)
40 cd04666 Nudix_Hydrolase_9 Memb 99.7 5.6E-17 1.2E-21 120.7 11.1 111 53-181 2-116 (122)
41 cd04689 Nudix_Hydrolase_30 Mem 99.7 5.4E-17 1.2E-21 121.0 11.1 97 75-178 13-112 (125)
42 COG1051 ADP-ribose pyrophospha 99.7 3.4E-17 7.5E-22 125.3 10.1 108 50-180 9-122 (145)
43 cd03426 CoAse Coenzyme A pyrop 99.7 2.5E-17 5.4E-22 127.9 9.4 94 74-180 16-118 (157)
44 PF00293 NUDIX: NUDIX domain; 99.7 6.5E-17 1.4E-21 121.2 10.4 112 51-181 2-120 (134)
45 cd04693 Nudix_Hydrolase_34 Mem 99.7 3.7E-17 8E-22 122.3 8.8 107 53-183 2-116 (127)
46 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 4.5E-17 9.7E-22 123.3 9.4 109 51-181 2-116 (137)
47 cd04670 Nudix_Hydrolase_12 Mem 99.7 7E-17 1.5E-21 120.8 10.1 108 51-180 2-113 (127)
48 cd04511 Nudix_Hydrolase_4 Memb 99.7 1.2E-16 2.7E-21 120.0 11.3 103 49-179 11-118 (130)
49 cd04667 Nudix_Hydrolase_10 Mem 99.7 7.7E-17 1.7E-21 118.0 9.8 91 74-181 11-102 (112)
50 cd04676 Nudix_Hydrolase_17 Mem 99.7 1.9E-16 4.1E-21 118.0 11.5 110 51-181 2-118 (129)
51 cd04690 Nudix_Hydrolase_31 Mem 99.7 1.6E-16 3.4E-21 117.2 10.5 94 75-180 13-110 (118)
52 cd03429 NADH_pyrophosphatase N 99.7 4.8E-17 1E-21 122.5 7.8 92 74-180 12-107 (131)
53 PRK00241 nudC NADH pyrophospha 99.7 4.2E-16 9E-21 129.8 13.8 93 74-181 143-239 (256)
54 cd04686 Nudix_Hydrolase_27 Mem 99.7 2.7E-16 5.9E-21 118.4 10.6 110 53-180 2-119 (131)
55 cd04661 MRP_L46 Mitochondrial 99.7 2.4E-16 5.1E-21 118.9 10.0 98 73-181 12-121 (132)
56 PRK15393 NUDIX hydrolase YfcD; 99.7 3.5E-16 7.5E-21 124.1 11.0 107 50-181 36-150 (180)
57 TIGR02150 IPP_isom_1 isopenten 99.7 1.9E-16 4.2E-21 123.0 9.2 118 48-190 24-152 (158)
58 PRK03759 isopentenyl-diphospha 99.7 4E-16 8.7E-21 124.2 9.3 116 48-185 31-157 (184)
59 cd04685 Nudix_Hydrolase_26 Mem 99.7 8.4E-16 1.8E-20 116.0 10.5 114 52-180 1-123 (133)
60 cd03676 Nudix_hydrolase_3 Memb 99.7 6.8E-16 1.5E-20 122.4 9.9 117 48-181 29-159 (180)
61 cd04699 Nudix_Hydrolase_39 Mem 99.7 7.6E-16 1.7E-20 115.0 9.5 94 75-180 14-114 (129)
62 TIGR02705 nudix_YtkD nucleosid 99.7 1.5E-15 3.2E-20 116.9 11.2 118 75-209 36-155 (156)
63 PRK10707 putative NUDIX hydrol 99.7 1.4E-15 3E-20 121.4 11.5 113 48-181 27-147 (190)
64 cd04662 Nudix_Hydrolase_5 Memb 99.6 2.8E-15 6.1E-20 111.1 11.0 56 53-116 2-65 (126)
65 PRK10546 pyrimidine (deoxy)nuc 99.6 5.2E-15 1.1E-19 111.6 12.7 92 74-180 15-112 (135)
66 PLN03143 nudix hydrolase; Prov 99.6 5.9E-15 1.3E-19 124.0 13.5 143 28-181 104-266 (291)
67 PRK10776 nucleoside triphospha 99.6 1.8E-14 3.9E-19 107.5 12.9 92 74-180 16-113 (129)
68 cd04694 Nudix_Hydrolase_35 Mem 99.6 4.9E-15 1.1E-19 113.1 9.8 53 53-116 3-61 (143)
69 PRK05379 bifunctional nicotina 99.6 8.6E-15 1.9E-19 127.0 12.4 99 74-180 214-322 (340)
70 cd04663 Nudix_Hydrolase_6 Memb 99.6 2E-14 4.2E-19 106.9 11.4 101 75-180 15-116 (126)
71 TIGR00586 mutt mutator mutT pr 99.6 3.2E-14 7E-19 106.1 12.4 92 74-180 16-113 (128)
72 KOG3041|consensus 99.6 1.5E-14 3.3E-19 112.2 10.7 150 18-181 31-195 (225)
73 cd02883 Nudix_Hydrolase Nudix 99.6 2.6E-14 5.6E-19 104.8 11.2 107 53-180 2-112 (123)
74 cd04665 Nudix_Hydrolase_8 Memb 99.6 3.4E-14 7.4E-19 104.9 11.6 90 75-177 12-102 (118)
75 cd04674 Nudix_Hydrolase_16 Mem 99.5 2.3E-13 5E-18 100.3 13.4 34 83-116 28-61 (118)
76 PLN02709 nudix hydrolase 99.5 4.1E-14 8.8E-19 114.4 9.6 93 74-179 51-154 (222)
77 cd03425 MutT_pyrophosphohydrol 99.5 1.1E-13 2.5E-18 102.0 10.6 92 74-180 13-110 (124)
78 COG2816 NPY1 NTP pyrophosphohy 99.5 3.7E-14 8E-19 117.1 6.2 86 82-182 166-252 (279)
79 cd03670 ADPRase_NUDT9 ADP-ribo 99.5 1.5E-12 3.2E-17 103.1 13.0 42 74-115 49-91 (186)
80 PLN02791 Nudix hydrolase homol 99.5 5.7E-13 1.2E-17 124.6 12.3 125 45-185 26-163 (770)
81 PLN02552 isopentenyl-diphospha 99.4 1.1E-12 2.4E-17 108.2 11.4 114 48-182 53-205 (247)
82 PRK08999 hypothetical protein; 99.4 3.7E-12 8.1E-17 109.4 11.2 91 74-180 17-114 (312)
83 KOG2839|consensus 99.3 2.1E-11 4.6E-16 90.6 7.6 118 48-181 6-126 (145)
84 COG0494 MutT NTP pyrophosphohy 99.2 3.4E-10 7.3E-15 85.2 11.9 43 74-116 24-69 (161)
85 KOG3084|consensus 99.2 1.6E-12 3.4E-17 108.0 -1.4 86 83-180 212-298 (345)
86 KOG3069|consensus 99.1 2.5E-10 5.3E-15 91.5 8.5 97 73-179 57-162 (246)
87 COG1443 Idi Isopentenyldiphosp 98.9 2.4E-09 5.3E-14 82.1 6.1 125 50-196 32-169 (185)
88 PLN02839 nudix hydrolase 98.8 1.3E-08 2.8E-13 87.5 7.1 127 73-213 217-355 (372)
89 COG4119 Predicted NTP pyrophos 98.8 1.6E-08 3.4E-13 73.5 5.8 58 51-116 3-68 (161)
90 cd03431 DNA_Glycosylase_C DNA 98.7 1.6E-07 3.5E-12 68.5 9.9 87 74-180 14-105 (118)
91 KOG0648|consensus 98.7 1.7E-08 3.7E-13 84.2 3.6 115 48-181 112-232 (295)
92 PF14815 NUDIX_4: NUDIX domain 98.0 5.4E-05 1.2E-09 55.2 8.3 90 72-180 7-103 (114)
93 KOG4195|consensus 97.8 3E-05 6.6E-10 61.8 4.0 38 74-111 139-177 (275)
94 KOG0142|consensus 97.7 5E-05 1.1E-09 59.8 4.7 132 48-202 49-205 (225)
95 KOG4432|consensus 97.6 0.00041 8.8E-09 57.9 9.0 149 26-181 204-377 (405)
96 PF13869 NUDIX_2: Nucleotide h 97.0 0.012 2.7E-07 46.4 10.8 114 48-180 40-170 (188)
97 COG4112 Predicted phosphoester 96.5 0.023 5.1E-07 43.5 8.1 94 75-179 73-186 (203)
98 KOG2937|consensus 96.1 0.0036 7.8E-08 53.2 2.5 42 75-116 96-138 (348)
99 KOG4432|consensus 95.8 0.014 3E-07 49.1 4.6 61 85-146 80-141 (405)
100 KOG1689|consensus 95.3 0.13 2.8E-06 39.7 7.8 58 48-113 66-123 (221)
101 KOG4313|consensus 95.0 0.049 1.1E-06 44.6 4.9 97 74-179 148-257 (306)
102 PRK10880 adenine DNA glycosyla 90.7 2 4.2E-05 37.7 8.8 35 74-115 242-281 (350)
103 KOG4548|consensus 88.5 2.1 4.6E-05 35.4 6.8 96 75-181 140-248 (263)
104 PF03487 IL13: Interleukin-13; 73.6 3.1 6.7E-05 24.0 1.9 25 87-111 12-36 (43)
105 PF14443 DBC1: DBC1 70.1 20 0.00043 26.6 5.9 34 83-116 23-59 (126)
106 TIGR01084 mutY A/G-specific ad 44.9 34 0.00074 28.9 4.1 18 74-91 239-261 (275)
107 PF09505 Dimeth_Pyl: Dimethyla 31.0 27 0.00059 30.2 1.3 26 91-116 407-432 (466)
108 cd08048 TAF11 TATA Binding Pro 29.7 64 0.0014 22.1 2.8 42 180-221 41-83 (85)
109 PRK13910 DNA glycosylase MutY; 28.9 75 0.0016 27.1 3.7 17 74-90 197-217 (289)
110 KOG2937|consensus 28.7 18 0.00038 31.3 -0.2 34 83-116 263-296 (348)
111 COG0828 RpsU Ribosomal protein 23.2 74 0.0016 20.8 2.0 27 88-115 1-30 (67)
112 PF14044 NETI: NETI protein 23.2 72 0.0016 20.1 1.9 23 92-116 3-25 (57)
113 PF07026 DUF1317: Protein of u 22.3 68 0.0015 20.3 1.6 23 84-109 22-44 (60)
114 smart00250 PLEC Plectin repeat 21.5 57 0.0012 18.3 1.1 21 88-108 9-33 (38)
115 PF10415 FumaraseC_C: Fumarase 21.1 1.1E+02 0.0024 19.0 2.4 23 198-220 26-48 (55)
No 1
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.89 E-value=2.1e-22 Score=160.44 Aligned_cols=147 Identities=22% Similarity=0.242 Sum_probs=100.1
Q ss_pred CCCcccccceeeeeecCCccCcc-ccccccCCcccccccCC--ccceEEEEEEecCCceEEEEeccCcEEEEEEee---C
Q psy7748 10 TWGSSAWNLAATEVYGRPSTNLN-DFIELTQSDLKDDKYKS--GYHASHCMIFAYNDDKIFATYTARANVLMQMRF---D 83 (232)
Q Consensus 10 ~w~~~~~~~~~~~vy~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~---~ 83 (232)
+|+. ++++++|+++|++++ +.+++|+|....+.... ...+++++++..++.++ ++.|+|+ .
T Consensus 7 ~~~~----~~~~~v~~~~~~~v~~~~~~~~~G~~~~~~~v~~~~~~~v~v~~~~~~~~vl---------Lvrq~r~~~~~ 73 (185)
T PRK11762 7 KPEI----LNRETVAKSRLFRVESVDLEFSNGVERVYERMRPSGRGAVMIVPILDDDTLL---------LIREYAAGTER 73 (185)
T ss_pred CCEE----eeEEEEEeCCEEEEEEEEEEcCCCCEEEEEEEecCCCCEEEEEEEeCCCEEE---------EEEeecCCCCC
Confidence 6777 999999999999999 89999999876655422 23345555565443221 2233343 3
Q ss_pred CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCC
Q psy7748 84 GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDY 162 (232)
Q Consensus 84 g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (232)
+.|+||||.+|+||++++||+||++||||+.+. +..+...+..... ....+++|.+........ ..+
T Consensus 74 ~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~---~~~~~~~f~a~~~~~~~~--------~~~- 141 (185)
T PRK11762 74 YELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSY---FSSKMNIVLAEDLYPERL--------EGD- 141 (185)
T ss_pred cEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCc---cCcEEEEEEEEccccccC--------CCC-
Confidence 579999999999999999999999999999998 6555444433222 223444444432211110 112
Q ss_pred CccceeeEeeeCccccccc
Q psy7748 163 GVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 163 ~~E~~~~~wvpl~el~~~i 181 (232)
+.|.+++.|+|++++.+++
T Consensus 142 e~E~i~~~~~~~~e~~~~~ 160 (185)
T PRK11762 142 EPEPLEVVRWPLADLDELL 160 (185)
T ss_pred CCceeEEEEEcHHHHHHHH
Confidence 2578899999999999886
No 2
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.86 E-value=2.5e-21 Score=154.40 Aligned_cols=169 Identities=12% Similarity=0.146 Sum_probs=115.2
Q ss_pred ceeeeeecCCccCcc-cc--ccccCCcc--cccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEeeC-------C-
Q psy7748 18 LAATEVYGRPSTNLN-DF--IELTQSDL--KDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFD-------G- 84 (232)
Q Consensus 18 ~~~~~vy~~~~~~~~-~~--~~~~~~~~--~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-------g- 84 (232)
+.++.+|+++||+++ +. +.+|+|.. ..+....+..++++++++++++.+ .++.|+|++ +
T Consensus 7 ~~~~~~~~~~~~~v~~~~~~~~~pdG~~~~~~r~vv~~~~~v~Vl~~~~~~~~v--------vLvrQyR~~v~~~~~~~~ 78 (191)
T PRK15009 7 LIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNAKKKTV--------VLIRQFRVATWVNGNESG 78 (191)
T ss_pred EEEEEEEeCCeEEEEEEEEEEECCCCCccceEEEEEEECCEEEEEEEECCCCEE--------EEEEcccccccccCCCCc
Confidence 678899999999999 55 56799974 333446667788888887644332 245666643 3
Q ss_pred -eeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCC
Q psy7748 85 -YIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDY 162 (232)
Q Consensus 85 -~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (232)
.|++|+|.+|+| +|++||+|||+||||+.+. +..+...+..++.. ....++|.+......... ....++
T Consensus 79 ~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~s---~e~~~lf~a~~~~~~~~~-----~~~~de 149 (191)
T PRK15009 79 QLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGV---TELIHFFIAEYSDSQRAN-----AGGGVE 149 (191)
T ss_pred eEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCccc---CcEEEEEEEEECchhccc-----CCCCCC
Confidence 689999999976 6999999999999999998 66555555555443 345566666543211110 011223
Q ss_pred CccceeeEeeeCcccccccCCchHHHHHHHHHHHHHHH-HHHHHhCCCCC
Q psy7748 163 GVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQL-LAALLKLKILS 211 (232)
Q Consensus 163 ~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~~~~l-~~~l~~~~~~~ 211 (232)
+|.+++.|+|++++.+++ .++-+.+++..+ +..+..+++|+
T Consensus 150 -~E~iev~~~~~~e~~~~i-------~~G~i~da~ti~al~~~~~~~~~~ 191 (191)
T PRK15009 150 -DEDIEVLELPFSQALEMI-------KTGEIRDGKTVLLLNYLQTSHLMD 191 (191)
T ss_pred -CceEEEEEEcHHHHHHHH-------HcCCCCcHHHHHHHHHHHHhccCC
Confidence 589999999999999986 445555555543 55666667764
No 3
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.85 E-value=6.2e-21 Score=153.54 Aligned_cols=153 Identities=17% Similarity=0.074 Sum_probs=104.3
Q ss_pred CCCCCcccccceeeeeecCCccCcc-ccc--cccCCc---ccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEe
Q psy7748 8 DRTWGSSAWNLAATEVYGRPSTNLN-DFI--ELTQSD---LKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR 81 (232)
Q Consensus 8 ~~~w~~~~~~~~~~~vy~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R 81 (232)
.+.|.. ++++++|++ |++++ +.+ .+|+|. ...+....+..++++++++++++.| .++.|+|
T Consensus 5 ~~~~~~----~~~~~v~~~-~~~v~~~~~~~~~~~G~~~~~~~~~vv~~~~~V~il~~~~~~~~v--------lLvrQyR 71 (202)
T PRK10729 5 KNDVEI----IARETLYRG-FFSLDLYRFRHRLFNGEMSGEVRREIFERGHAAVLLPFDPVRDEV--------VLIEQIR 71 (202)
T ss_pred CCceEE----EEEEEEEcC-eEEEEEEEEEEEecCCccccEEeEEEEEcCCeEEEEEEECCCCEE--------EEEEeee
Confidence 445777 899999996 78786 444 357775 2333445566777777787653222 3466778
Q ss_pred eC--------CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccc
Q psy7748 82 FD--------GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEI 152 (232)
Q Consensus 82 ~~--------g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (232)
++ ..|++|+|.+|+||++++||+|||.||||+.+. +..+..++..++ ......++|.+.........
T Consensus 72 ~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg---~~~e~~~~fla~~~~~~~~~- 147 (202)
T PRK10729 72 IAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPG---GTSERSSIMVGEVDATTASG- 147 (202)
T ss_pred cccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCC---cCceEEEEEEEEEcchhccc-
Confidence 54 269999999999999999999999999999988 655544444433 33456677777642211110
Q ss_pred ccccccccCCCccceeeEeeeCccccccc
Q psy7748 153 EKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 153 ~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.....++.|.+++.|+|++++.+++
T Consensus 148 ----~~~~~de~E~i~v~~~~~~e~~~~~ 172 (202)
T PRK10729 148 ----IHGLADENEDIRVHVVSREQAYQWV 172 (202)
T ss_pred ----CCCCCCCCCceEEEEEcHHHHHHHH
Confidence 0011123588999999999999886
No 4
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.85 E-value=7.8e-21 Score=151.07 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=101.2
Q ss_pred cceeeeeecCCccCcc-c-ccccc-CCc--ccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEee--------C
Q psy7748 17 NLAATEVYGRPSTNLN-D-FIELT-QSD--LKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF--------D 83 (232)
Q Consensus 17 ~~~~~~vy~~~~~~~~-~-~~~~~-~~~--~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--------~ 83 (232)
.++++.+|+++|++++ + ....+ ++. ...+.+.....++++++++.+++.++ ++.|+|+ +
T Consensus 5 ~l~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~v~vl~~~~~~~~vl--------Lvrq~R~~~~~~~~~~ 76 (185)
T TIGR00052 5 IIIKDTLYSGFFSLLHNIFYHRLFKGGESIRVTREIYDRGNAAAVLLYDPKKDTVV--------LIEQFRIAAYVNGEEP 76 (185)
T ss_pred EEEEEEEecCCcEEEEEEEEEEeeCCCCCceEEEEEEEcCCeEEEEEEECCCCEEE--------EEECceeeeeecCCcc
Confidence 3789999999999998 3 34554 542 33444456677888888876543332 3445552 3
Q ss_pred CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCC
Q psy7748 84 GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDY 162 (232)
Q Consensus 84 g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (232)
+.|++|||++++||++++||+||++||||+.+. +..+...+...+ ......++|.+.......... ...++
T Consensus 77 ~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g---~~~~~~~~f~a~~~~~~~~~~-----~~~~~ 148 (185)
T TIGR00052 77 WLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPG---GVTELIHLFIAEVDDNQAAGI-----GGGAD 148 (185)
T ss_pred eEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCC---CCcEEEEEEEEEEchhhcCCC-----CCCCC
Confidence 589999999999999999999999999999998 554444333322 335667777877654322111 11222
Q ss_pred CccceeeEeeeCccccccc
Q psy7748 163 GVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 163 ~~E~~~~~wvpl~el~~~i 181 (232)
.|.+++.|+|++++.+++
T Consensus 149 -~E~ie~~~~~~~e~~~~~ 166 (185)
T TIGR00052 149 -EEEIEVLHLVFSQALQWI 166 (185)
T ss_pred -ccceEEEEeCHHHHHHHH
Confidence 467899999999999886
No 5
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.9e-19 Score=134.32 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=79.2
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV 125 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~ 125 (232)
+.+|++++++.++ .+|+++|. +|.|.+|||++++||++++||+||++||||+.+. ..++.....
T Consensus 2 ~~~~~~~i~~~~~-----------~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~ 70 (125)
T cd04679 2 RVGCGAAILRDDG-----------KLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDH 70 (125)
T ss_pred ceEEEEEEECCCC-----------EEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEee
Confidence 5678888888653 46666663 4799999999999999999999999999999987 444333222
Q ss_pred eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
. ......+.+.++|.+....+..... + ..|..++.|++++++++.+
T Consensus 71 ~-~~~~~~~~~~~~f~~~~~~~~~~~~--------~-~~E~~~~~W~~~~~l~~~l 116 (125)
T cd04679 71 I-IEEPPQHWVAPVYLAENFSGEPRLM--------E-PDKLLELGWFALDALPQPL 116 (125)
T ss_pred c-ccCCCCeEEEEEEEEeecCCccccC--------C-CccccEEEEeCHHHCCchh
Confidence 1 1112446777888887654432211 1 1478899999999999865
No 6
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.3e-18 Score=128.73 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=68.0
Q ss_pred EEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ceeeeceeeeeeecCCcEEEEEEEEEEeec
Q psy7748 75 NVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK---YKVKDSDLVCIHYSQSKKIILHFYALQVEK 146 (232)
Q Consensus 75 ~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (232)
++|+++|. +|.|++|||++++||++.+||+||++||||+.+. .......+... ....+.+.++|.+....
T Consensus 12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~ 89 (120)
T cd04683 12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRT--EDIESRIGLFFTVRRWS 89 (120)
T ss_pred EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecC--CCCceEEEEEEEEEeec
Confidence 56777763 4799999999999999999999999999999976 22222222111 11245667788887644
Q ss_pred CcccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748 147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR 182 (232)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~ 182 (232)
+.+... + .+|..++.|+|++++++.+.
T Consensus 90 ~~~~~~--------~-~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 90 GEPRNC--------E-PDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred CccccC--------C-CCcEeeEEEEchHHCcchhc
Confidence 332221 1 24788999999999998753
No 7
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.78 E-value=2.6e-18 Score=131.54 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=77.2
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEe----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c--eeeece
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y--KVKDSD 123 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~--~~~~~~ 123 (232)
..+++++|++.+ +++|+++| ++|+|.+|||+++.|||+++||+||++||||+.+. . .++...
T Consensus 12 ~v~v~~vI~~~~-----------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~ 80 (144)
T cd03430 12 LVSIDLIVENED-----------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVF 80 (144)
T ss_pred eEEEEEEEEeCC-----------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEE
Confidence 346777777765 35677777 35899999999999999999999999999999986 4 333322
Q ss_pred ee-ee----eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 124 LV-CI----HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 124 ~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.. +. ......+.+.++|.+....+..... +.|..++.|+++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 81 EHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLP----------DEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEeccccccCCCccEEEEEEEEEEEcCCcccCC----------chhccEeEEecHHHHhcC
Confidence 11 11 1111336677788887765443211 258889999999999875
No 8
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.7e-18 Score=129.26 Aligned_cols=107 Identities=24% Similarity=0.338 Sum_probs=71.7
Q ss_pred ceEEEEEEecCCceEEEEeccCcEEEEEEe--eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec-eeee-
Q psy7748 52 HASHCMIFAYNDDKIFATYTARANVLMQMR--FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS-DLVC- 126 (232)
Q Consensus 52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~-~~~~- 126 (232)
.++++++++.++ ++|+++| ++|.|++|||+++.|||+.+||+||++||||+++. ..+... .+.+
T Consensus 3 ~~v~~~i~~~~~-----------~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 71 (125)
T cd04696 3 VTVGALIYAPDG-----------RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFS 71 (125)
T ss_pred cEEEEEEECCCC-----------CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEecc
Confidence 356777777553 4555555 46899999999999999999999999999999987 433222 1111
Q ss_pred eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 127 IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.......+.+.+.|.+......... +.|..++.|+|++++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 72 EEFHKPAHFVLFDFFARTDGTEVTP-----------NEEIVEWEWVTPEEALDY 114 (125)
T ss_pred CCCCCccEEEEEEEEEEecCCcccC-----------CcccceeEEECHHHHhcC
Confidence 1111223455555666544322111 247899999999999876
No 9
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.78 E-value=2.7e-18 Score=131.09 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=77.3
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEe---eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR---FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD 123 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R---~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~ 123 (232)
+....++++++++.++.+ +|++++ .+|.|+||||++++|||+++||+||++||||+++. ...+...
T Consensus 10 ~~~~~av~~vv~~~~~~v----------LL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~ 79 (142)
T cd04700 10 EVEARAAGAVILNERNDV----------LLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTY 79 (142)
T ss_pred ceeeeeEEEEEEeCCCcE----------EEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEE
Confidence 455678888988865332 233434 24789999999999999999999999999999987 4433322
Q ss_pred eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
... .........++|.+........+. . +.|+.++.|+|++++.+++
T Consensus 80 -~~~-~~~~~~~~~~~f~~~~~~~~~~~~--------~-~~E~~~~~w~~~~el~~~~ 126 (142)
T cd04700 80 -LGR-FDDGVLVLRHVWLAEPEGQTLAPK--------F-TDEIAEASFFSREDVAQLY 126 (142)
T ss_pred -EEE-cCCCcEEEEEEEEEEecCCccccC--------C-CCCEEEEEEECHHHhhhcc
Confidence 111 122234455777777643321111 1 2489999999999999986
No 10
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.77 E-value=1.7e-18 Score=129.79 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=79.0
Q ss_pred ceEEEEEEecCCceEEEEeccCcEEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec-eeeeee
Q psy7748 52 HASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS-DLVCIH 128 (232)
Q Consensus 52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~-~~~~~~ 128 (232)
.++++++++.+. ++++||+.+|.. +.|.||||++++||++.+||.||++||||+.+. ...+.. .+....
T Consensus 2 ~~a~~ii~~~~~--------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 73 (131)
T cd03673 2 LAAGGVVFRGSD--------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSS 73 (131)
T ss_pred eeEEEEEEEccC--------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccC
Confidence 567888887642 235677877755 599999999999999999999999999999987 433322 222221
Q ss_pred ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 129 YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.....+...++|.+......... . .+.|..++.|+|++++.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~E~~~~~W~~~~el~~~~ 117 (131)
T cd03673 74 SGKRVHKTVHWWLMRALGGEFTP--------Q-PDEEVDEVRWLPPDEARDRL 117 (131)
T ss_pred CCCCcceEEEEEEEEEcCCCccc--------C-CCCcEEEEEEcCHHHHHHHc
Confidence 11133556677777665443322 0 12588999999999998875
No 11
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.77 E-value=3.1e-18 Score=131.60 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=74.3
Q ss_pred ccceEEEEEEecCCceEEEEeccCcEEEEEEe--eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCC--c-ceeeec--
Q psy7748 50 GYHASHCMIFAYNDDKIFATYTARANVLMQMR--FDGYIGFPGGLVDAGESPLEALNRELNEEINLNP--K-YKVKDS-- 122 (232)
Q Consensus 50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~--~-~~~~~~-- 122 (232)
.+.++++++++.++ .+|+.+| .++.|++|||++|.|||+.+||+||++||||+.+ . ..+...
T Consensus 6 ~~~~v~~vi~~~~~-----------~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 74 (148)
T PRK09438 6 RPVSVLVVIYTPDL-----------GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQR 74 (148)
T ss_pred CceEEEEEEEeCCC-----------eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeeccccc
Confidence 46678888888663 3455555 3578999999999999999999999999999998 3 222210
Q ss_pred --eeee------eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 123 --DLVC------IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 123 --~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.+.+ ....+..+...++|.+....+.. .. . +|..++.|+|++++.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~---------~-~E~~~~~W~~~~e~~~~~ 130 (148)
T PRK09438 75 SIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERP-VV---------L-TEHLAYQWLDAREAAALT 130 (148)
T ss_pred ccccccchhhhhccccccCCceeEEEEEecCCCCc-cc---------c-CcccceeeCCHHHHHHHh
Confidence 0100 00111235566778776543211 11 1 378999999999999875
No 12
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.77 E-value=7.3e-18 Score=129.43 Aligned_cols=118 Identities=25% Similarity=0.290 Sum_probs=77.7
Q ss_pred ccceEEEEEEecCCceEEEEeccCcEEEEEEeeC--CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece---
Q psy7748 50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRFD--GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD--- 123 (232)
Q Consensus 50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~--g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~--- 123 (232)
++.++++++++.+ +.+|+++|.. +.|.+|||++++||++.+||.||++||||+.+. ..++...
T Consensus 2 ~~~~v~~ii~~~~-----------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~ 70 (147)
T cd03671 2 YRPNVGVVLFNED-----------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDW 70 (147)
T ss_pred CCceEEEEEEeCC-----------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCe
Confidence 5678899998866 3567777744 699999999999999999999999999999986 4433321
Q ss_pred eeeeeecC---------CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCC
Q psy7748 124 LVCIHYSQ---------SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG 183 (232)
Q Consensus 124 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~ 183 (232)
+.+..... ......++|.+.+..... ... .. .+++.|..++.|+|++++++++..
T Consensus 71 ~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~---l~-~~~~~E~~~~~W~~~~el~~~~~~ 134 (147)
T cd03671 71 LRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDS-EID---LN-APEHPEFDEWRWVPLEELPDLIVP 134 (147)
T ss_pred eEeeChhhhhccccCCcCCCEEEEEEEEEecCCCc-ccc---CC-CCCCCCEeeEEeCCHHHHHHhchh
Confidence 11111100 112344566665543110 000 00 112358999999999999998633
No 13
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=4.9e-18 Score=127.46 Aligned_cols=106 Identities=25% Similarity=0.263 Sum_probs=72.3
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eee
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVC 126 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~ 126 (232)
+++++++++++ ++|+++|. +|.|.+|||+++.|||+.+||.||++||||+++. ...+... ..+
T Consensus 3 av~~~i~~~~~-----------~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~ 71 (130)
T cd04681 3 AVGVLILNEDG-----------ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTY 71 (130)
T ss_pred eEEEEEEcCCC-----------cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeeccee
Confidence 56667777653 45666662 4799999999999999999999999999999987 4433222 111
Q ss_pred eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748 127 IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD 179 (232)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~ 179 (232)
.......+...++|.+.+........ ..|..++.|+|+++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~e~~~~~W~~~~el~~ 114 (130)
T cd04681 72 PYGGMEYDTLDLFFVCQVDDKPIVKA----------PDDVAELKWVVPQDIEL 114 (130)
T ss_pred eeCCceeEEEEEEEEEEeCCCCCcCC----------hHHhheeEEecHHHCCc
Confidence 11111234555677787654322211 24888999999999863
No 14
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=5.6e-18 Score=125.15 Aligned_cols=90 Identities=29% Similarity=0.394 Sum_probs=64.8
Q ss_pred EEEEEEe------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748 75 NVLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT 147 (232)
Q Consensus 75 ~vLl~~R------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (232)
++|+.+| ++|.|+||||++++||++++||+||++||||+++. ...+...+.. .......++|.+....+
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~ 87 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHP----TSELQLLHYYVVTFWQG 87 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEecc----CCCeEEEEEEEEEEecC
Confidence 5667666 34799999999999999999999999999999975 4332222211 12345667777765543
Q ss_pred cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.+.. .|..++.|+|+++++.+
T Consensus 88 ~~~~------------~E~~~~~W~~~~~l~~~ 108 (117)
T cd04691 88 EIPA------------QEAAEVHWMTANDIVLA 108 (117)
T ss_pred CCCc------------ccccccEEcCHHHcchh
Confidence 3211 47889999999999865
No 15
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.76 E-value=5.8e-18 Score=131.28 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=75.0
Q ss_pred ceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ceeeecee
Q psy7748 52 HASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK---YKVKDSDL 124 (232)
Q Consensus 52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~ 124 (232)
.++.++|.+.. +++|+.+|. +|.|+||||+|++|||+++||+||++||||+.+. ..+.....
T Consensus 18 ~~v~~vI~~~~-----------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~ 86 (159)
T PRK15434 18 ISLDFIVENSR-----------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQ 86 (159)
T ss_pred EEEEEEEECCC-----------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEE
Confidence 35566665543 467777773 4799999999999999999999999999999864 12222211
Q ss_pred -eeeee--cC--CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 125 -VCIHY--SQ--SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 125 -~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.+... .. ..+++.++|.+....+.+.... .|..++.|+++++++...
T Consensus 87 ~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~----------~E~~~~~W~~~~el~~~~ 138 (159)
T PRK15434 87 HFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPD----------EQHDDYRWLTPDALLASD 138 (159)
T ss_pred eecccccCCCccceEEEEEEEEEEecCCcccCCh----------HHeeEEEEEeHHHhhhcc
Confidence 11111 11 2367777888887655443322 478999999999998753
No 16
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.76 E-value=6.6e-18 Score=126.05 Aligned_cols=98 Identities=26% Similarity=0.345 Sum_probs=68.1
Q ss_pred EEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecC---CcEEEEEEEEEEeec
Q psy7748 75 NVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQ---SKKIILHFYALQVEK 146 (232)
Q Consensus 75 ~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 146 (232)
++|+.+|. +|.|.+|||+++.||++++||+||++||||+.+. ...+........... ..+.+.++|.+....
T Consensus 12 ~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 91 (128)
T cd04684 12 KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHHLCVFYDARVVG 91 (128)
T ss_pred EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeeccEEEEEEEEEEec
Confidence 56666663 3899999999999999999999999999999987 443333222111111 135677888887765
Q ss_pred CcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
+... ......|..++.|+|++++...
T Consensus 92 ~~~~--------~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 92 GALP--------VQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred Cccc--------cCCCCCCceeeEEECHHHhhcc
Confidence 4321 0111247789999999999865
No 17
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.76 E-value=8.7e-18 Score=127.67 Aligned_cols=111 Identities=20% Similarity=0.116 Sum_probs=72.8
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeee-----ce
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKD-----SD 123 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~-----~~ 123 (232)
+.+|++++++.+. +++|+.+| ..|.|.+|||++++||++++||.||++||||+.+. ..... ..
T Consensus 2 ~~~~~~~v~~~~~----------~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 71 (138)
T cd03674 2 HFTASAFVVNPDR----------GKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDV 71 (138)
T ss_pred cEEEEEEEEeCCC----------CeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceecccccccee
Confidence 3567788887651 24455555 46899999999999999999999999999999876 43321 11
Q ss_pred eeeeeecC----CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 124 LVCIHYSQ----SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 124 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
+....... ....+.++|.+.+..+..... .+.|..++.|+|++++..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~---------~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 72 HPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPP---------KSDESDAVRWFPLDELASL 123 (138)
T ss_pred EeecCCCCCCCCCcEEEEEEEEEEccCccccCC---------CCCcccccEEEcHHHhhhc
Confidence 11111111 123344567776554433210 1248889999999999764
No 18
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=7.2e-18 Score=125.29 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=66.6
Q ss_pred EEEEEEeeC---CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccc
Q psy7748 75 NVLMQMRFD---GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL 150 (232)
Q Consensus 75 ~vLl~~R~~---g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (232)
++|+.+|.+ +.|+||||+++.|||+.+||+||++||||+++. ..++.. ... .....++|.|....+.+.
T Consensus 13 ~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~---~~~----~~~~~~~f~~~~~~g~~~ 85 (121)
T cd04669 13 EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLI---VNQ----NGRTEHYFLARVISGKLG 85 (121)
T ss_pred EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEE---Eee----CCcEEEEEEEEEECCeec
Confidence 567777743 689999999999999999999999999999987 333222 111 123467888877665543
Q ss_pred ccccccccccCCCccceeeEeeeCcccccc
Q psy7748 151 EIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 151 ~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
..........+ +.+..++.|+++++++++
T Consensus 86 ~~~~~e~~~~~-~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 86 LGVGEEFERQS-DDNQYHPVWVDLDQLETI 114 (121)
T ss_pred CCCchhhcccC-CCCceEEEEEEHHHcccC
Confidence 22111111111 235678999999999976
No 19
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=9.6e-18 Score=125.74 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=79.5
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV 125 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~ 125 (232)
+.+++++|++.+ +++|+++|. +|.|.+|||+++.|||+.+||.||++||||+++. .........
T Consensus 2 ~~~v~~ii~~~~-----------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~ 70 (129)
T cd04678 2 RVGVGVFVLNPK-----------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTND 70 (129)
T ss_pred ceEEEEEEECCC-----------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeE
Confidence 457788888875 356777774 5899999999999999999999999999999987 443332222
Q ss_pred eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
. ......+.+.++|.+........... .+ .+|..++.|++++++.++
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 71 V-FEEEGKHYVTIFVKAEVDDGEAEPNK------ME-PEKCEGWEWFDWEELPSV 117 (129)
T ss_pred E-eCCCCcEEEEEEEEEEeCCCCcccCC------CC-CceeCceEEeCHHHCCCc
Confidence 1 12234567888888887654322210 01 136778999999999986
No 20
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=8.3e-18 Score=124.28 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=71.9
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c-eeeeceeeeeee
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y-KVKDSDLVCIHY 129 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~-~~~~~~~~~~~~ 129 (232)
++.+++++.++ .+|+++| ..+.|.+|||++++|||+++||+||++||||+.+. . ........ .
T Consensus 2 ~~~~~i~~~~~-----------~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~-~-- 67 (120)
T cd04680 2 GARAVVTDADG-----------RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYH-S-- 67 (120)
T ss_pred ceEEEEECCCC-----------eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEec-C--
Confidence 46667776653 4555555 44699999999999999999999999999999986 3 22222211 1
Q ss_pred cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 130 SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
........++|.+.......... +.|..++.|+|++++++++
T Consensus 68 ~~~~~~~~~~f~~~~~~~~~~~~----------~~E~~~~~w~~~~~l~~~~ 109 (120)
T cd04680 68 ASGSWDHVIVFRARADTQPVIRP----------SHEISEARFFPPDALPEPT 109 (120)
T ss_pred CCCCceEEEEEEecccCCCccCC----------cccEEEEEEECHHHCcccC
Confidence 11223456677776654332111 2588899999999999865
No 21
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.6e-17 Score=124.44 Aligned_cols=112 Identities=16% Similarity=0.219 Sum_probs=74.7
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-ee
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LV 125 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~ 125 (232)
|.+|++++++.+ ++|+.+|. .+.|.+|||+++.|||+++||.||++||||+.+. ..+.... +.
T Consensus 1 r~~a~~iv~~~~------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~ 68 (128)
T cd04687 1 RNSAKAVIIKND------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYI 68 (128)
T ss_pred CcEEEEEEEECC------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEe
Confidence 346667766632 46666663 3589999999999999999999999999999987 3322221 11
Q ss_pred ee----eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 126 CI----HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 126 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.. ......+.+.++|.+....+...... .. .+.+..++.|+|+++++++
T Consensus 69 ~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~-----~~-~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 69 GHNPTSELPGHFHQVELMFECKIKSGTPAKTP-----SK-PDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred ccCccccCCCceeEEEEEEEEEECCCCccccc-----CC-CCCCEEeeEEEcHHHhCcc
Confidence 11 11123477888888887654331111 11 1235679999999999876
No 22
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.5e-17 Score=124.30 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=71.0
Q ss_pred EEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee-eeeeecCCcEEEEEEEEEEeecCcccc
Q psy7748 75 NVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL-VCIHYSQSKKIILHFYALQVEKTDVLE 151 (232)
Q Consensus 75 ~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (232)
++|+++|.. +.|.+|||+++.||++.+||.||++||||+.+. ...+.... .+.......+...++|.+....+....
T Consensus 13 ~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 92 (126)
T cd04688 13 KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLLDESLYQ 92 (126)
T ss_pred EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeCCCcccc
Confidence 566777754 799999999999999999999999999999987 43333221 122222234677888988876544322
Q ss_pred cccccccccCCCccceeeEeeeCcccccc
Q psy7748 152 IEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 152 ~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.. ......+.|..++.|+|++++..+
T Consensus 93 ~~---~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 93 QD---IEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred cc---cceeccCCCEEEEEEeeHHHcccC
Confidence 11 011112358999999999999865
No 23
>PLN02325 nudix hydrolase
Probab=99.75 E-value=1.5e-17 Score=127.26 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=76.6
Q ss_pred CccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748 49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD 123 (232)
Q Consensus 49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~ 123 (232)
..+.++++++++.+ +||+++|. .|.|.+|||+++.|||+.+||+||++||||+++. ..++...
T Consensus 7 ~p~~~v~~vi~~~~------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~ 74 (144)
T PLN02325 7 IPRVAVVVFLLKGN------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVT 74 (144)
T ss_pred CCeEEEEEEEEcCC------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEe
Confidence 34556666766642 56777774 3799999999999999999999999999999988 5444332
Q ss_pred ee-eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 124 LV-CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 124 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.. +.......+.+.++|.+........... . +..+..++.|++++++++.+
T Consensus 75 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~------~-e~~e~~~~~W~~~d~Lp~~~ 126 (144)
T PLN02325 75 NNVFLEEPKPSHYVTVFMRAVLADPSQVPQN------L-EPEKCYGWDWYEWDNLPEPL 126 (144)
T ss_pred cceeecCCCCcEEEEEEEEEEECCCCCCCCc------C-CchhcCceEEEChHHCChhh
Confidence 21 1111223466777787776433211111 1 12356789999999999753
No 24
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.1e-17 Score=123.92 Aligned_cols=95 Identities=26% Similarity=0.270 Sum_probs=65.6
Q ss_pred EEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeee---cCCcEEEEEEEEEEeec
Q psy7748 75 NVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHY---SQSKKIILHFYALQVEK 146 (232)
Q Consensus 75 ~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 146 (232)
.+|+++|. ++.|.+|||++++|||+++||.||++||||+++. ...+......... ....+...++|.+....
T Consensus 12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (122)
T cd04673 12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLG 91 (122)
T ss_pred EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEEEEEEEEEEeCC
Confidence 45666663 4789999999999999999999999999999976 4333322221111 11235566667776544
Q ss_pred CcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
..... ..|..++.|++++++.++
T Consensus 92 ~~~~~-----------~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 92 GEPVA-----------GDDALDARWVPLDELAAL 114 (122)
T ss_pred CcccC-----------CcccceeEEECHHHHhhC
Confidence 33211 247889999999999886
No 25
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2.5e-18 Score=131.51 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=78.4
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeec-ceeecCCCCCHHHHHhHHHHHhhCCCCc---ceee
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGF-PGGLVDAGESPLEALNRELNEEINLNPK---YKVK 120 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~ 120 (232)
++++.+++++.+++ .+.+|+++| ++|.|++ |||++++|||+++||+||++||||+.+. +..+
T Consensus 2 h~~v~~~v~~~~~~--------~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~ 73 (144)
T cd04692 2 HRTFHCWIITKDEG--------KGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPL 73 (144)
T ss_pred ceEEEEEEEEccCC--------CCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEe
Confidence 56788888886532 257889888 3579999 5999999999999999999999999874 2222
Q ss_pred eceeeeee-ecC-CcEEEEEEEEEEeec--CcccccccccccccCCCccceeeEeeeCcccccccCCchH
Q psy7748 121 DSDLVCIH-YSQ-SKKIILHFYALQVEK--TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPC 186 (232)
Q Consensus 121 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~ 186 (232)
........ ... ......++|.+.... +.+... +.|+.++.|+|++++.+++...|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~----------~~E~~~~~W~~~~el~~~~~~~~~ 133 (144)
T cd04692 74 GTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQ----------KEEVAGVVLIPLDEFAELLEEEDH 133 (144)
T ss_pred eEEEEeccccCCCccceEEEEEEEeccCChhhcCCC----------hhHhheEEEECHHHHHHHHHcCCC
Confidence 22211111 111 123345666666543 111111 258899999999999988755543
No 26
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.3e-17 Score=125.32 Aligned_cols=111 Identities=24% Similarity=0.308 Sum_probs=73.2
Q ss_pred ccceEEEEEEecCCceEEEEeccCcEEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee--
Q psy7748 50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV-- 125 (232)
Q Consensus 50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~-- 125 (232)
...++++++++.+ +.+|+++|.. +.|.||||++++|||+.+||.||++||||+.+. .........
T Consensus 6 ~~~~~~~~v~~~~-----------~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~ 74 (132)
T cd04677 6 ILVGAGVILLNEQ-----------GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKE 74 (132)
T ss_pred cccceEEEEEeCC-----------CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCc
Confidence 3456677777765 3467777754 699999999999999999999999999999987 433322111
Q ss_pred -eee-ecCC-cEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 126 -CIH-YSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 126 -~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
+.. ..+. ...+.++|.+.......... ..|..++.|+|++++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~e~~~~~W~~~~e~~~~~ 123 (132)
T cd04677 75 FYVKPNGDDEQYIVTLYYVTKVFGGKLVPD----------GDETLELKFFSLDELPELI 123 (132)
T ss_pred eeecCCCCcEEEEEEEEEEEeccCCcccCC----------CCceeeEEEEChhHCccch
Confidence 110 1111 23444555554432221111 2478899999999998875
No 27
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.75 E-value=8.2e-18 Score=126.16 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=77.5
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eeeee
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVCIH 128 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~~~ 128 (232)
..+|+++++..+.+ +..+|+.+|.++.|.+|||++++|||+.+||.||++||||+.+. ....... .....
T Consensus 2 ~~~~g~vi~~~~~~--------~~~vLl~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 73 (130)
T cd03428 2 ERSAGAIIYRRLNN--------EIEYLLLQASYGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNY 73 (130)
T ss_pred ceEEEEEEEEecCC--------CceEEEEEccCCcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEc
Confidence 35788888886642 23567777655999999999999999999999999999999987 4332111 11111
Q ss_pred ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 129 YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.........++|.+.+........ +.|..++.|++++++.+++
T Consensus 74 ~~~~~~~~~~~f~~~~~~~~~~~~----------~~E~~~~~W~~~~e~~~~~ 116 (130)
T cd03428 74 QVRGKLKTVTYFLAELRPDVEVKL----------SEEHQDYRWLPYEEALKLL 116 (130)
T ss_pred cccCcceEEEEEEEEeCCCCcccc----------ccceeeEEeecHHHHHHHc
Confidence 112235566777777652211111 1378899999999998875
No 28
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.8e-17 Score=123.42 Aligned_cols=107 Identities=23% Similarity=0.270 Sum_probs=73.4
Q ss_pred ceEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeee
Q psy7748 52 HASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHY 129 (232)
Q Consensus 52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~ 129 (232)
..+++++++.+ ++|+.+| ..|.|.+|||++++|||+.+||+||++||||+.+. ..+..........
T Consensus 3 ~~v~~~i~~~~------------~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~ 70 (123)
T cd04672 3 VDVRAAIFKDG------------KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHH 70 (123)
T ss_pred ceEEEEEEECC------------EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEecccccc
Confidence 35666666642 3444444 57899999999999999999999999999999886 3333332221111
Q ss_pred c--CCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 130 S--QSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 130 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
. ...+.+.++|.+......+... .|..++.|+++++++++.
T Consensus 71 ~~~~~~~~~~~~f~~~~~~~~~~~~-----------~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 71 PPPQPYQVYKLFFLCEILGGEFKPN-----------IETSEVGFFALDDLPPLS 113 (123)
T ss_pred CCCCceEEEEEEEEEEecCCcccCC-----------CceeeeEEECHHHCcccc
Confidence 1 2235666788887754332211 378899999999998874
No 29
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.74 E-value=1.5e-17 Score=126.74 Aligned_cols=96 Identities=22% Similarity=0.187 Sum_probs=60.4
Q ss_pred cEEEEEEe------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee-----eeeecCCc-EEEE--E
Q psy7748 74 ANVLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV-----CIHYSQSK-KIIL--H 138 (232)
Q Consensus 74 ~~vLl~~R------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~-----~~~~~~~~-~~~~--~ 138 (232)
+++|+++| ++|.|++|||++++|||+++||+||++||||+.+. ..+....+. .....+.. .... +
T Consensus 15 ~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PRK15472 15 GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYL 94 (141)
T ss_pred CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEE
Confidence 35677776 24899999999999999999999999999999875 222111110 01111111 1222 2
Q ss_pred EEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 139 FYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
+|.+......... +.|..++.|+++++++++
T Consensus 95 ~~~~~~~~~~~~~-----------~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 95 IFDCVSANRDVKI-----------NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred EEEeecCCCcccC-----------ChhhheEEEccHHHhccc
Confidence 2333332222111 247889999999999986
No 30
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.4e-17 Score=122.03 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=72.0
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeee
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCI 127 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~ 127 (232)
.+++++++.+ +.+|+.+|. ++.|.+|||+++.||++++||+||++||||+++. ...+.....
T Consensus 2 ~~~~vv~~~~-----------~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~-- 68 (123)
T cd04671 2 IVAAVILNNQ-----------GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQ-- 68 (123)
T ss_pred EEEEEEEcCC-----------CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEcc--
Confidence 3556666654 356676663 4799999999999999999999999999999987 443332211
Q ss_pred eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748 128 HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD 179 (232)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~ 179 (232)
..+...++|.+....+.+... .+.+.|+.++.|+|+++++-
T Consensus 69 ----~~~~~~~~f~a~~~~g~~~~~-------~~~~~e~~~~~W~~~~el~~ 109 (123)
T cd04671 69 ----GGSWFRFVFTGNITGGDLKTE-------KEADSESLQARWYSNKDLPL 109 (123)
T ss_pred ----CCeEEEEEEEEEEeCCeEccC-------CCCCcceEEEEEECHHHCCC
Confidence 124566777787665443321 11234788999999999953
No 31
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.6e-17 Score=125.13 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=66.9
Q ss_pred cCcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eeeeeecCCcEEEEEEEEEEeec
Q psy7748 72 ARANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVCIHYSQSKKIILHFYALQVEK 146 (232)
Q Consensus 72 ~~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 146 (232)
.++.+|+.+|. +|.|.+|||++++|||+.+||.||++||||+++. ....... ..+. .........++|.+....
T Consensus 12 ~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~ 90 (131)
T cd04695 12 KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYE-ANDNRILMAPVFVGFVPP 90 (131)
T ss_pred CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEee-cCCceEEEEEEEEEEecC
Confidence 34567777773 6899999999999999999999999999999986 3221111 1111 112223445556655543
Q ss_pred CcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
...... +.|..++.|+|++++.++.
T Consensus 91 ~~~~~~----------~~E~~~~~W~~~~e~~~~~ 115 (131)
T cd04695 91 HQEVVL----------NHEHTEYRWCSFAEALELA 115 (131)
T ss_pred CCcccc----------CchhcccEecCHHHHHHhc
Confidence 322111 1478899999999999875
No 32
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.74 E-value=1.4e-17 Score=127.49 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=70.6
Q ss_pred ceEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeee
Q psy7748 52 HASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHY 129 (232)
Q Consensus 52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~ 129 (232)
+.+++++++.+++ .+|+.+| .++.|+||||++++|||+.+||+||++||||+.+. ... ...+.....
T Consensus 2 p~~gaii~~~~~~----------~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~~~~~ 70 (145)
T cd03672 2 PVYGAIILNEDLD----------KVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYIELII 70 (145)
T ss_pred CeeEEEEEeCCCC----------EEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceeeeccc
Confidence 3567777776422 4566665 44699999999999999999999999999999987 321 122222111
Q ss_pred cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCc
Q psy7748 130 SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGL 184 (232)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~ 184 (232)
....+.+|+...+..... . ....+.|..++.|+|++++++++...
T Consensus 71 --~~~~~~~f~~~~~~~~~~-------~-~~~~~~E~~~~~Wv~~~el~~~~~~~ 115 (145)
T cd03672 71 --RGQNVKLYIVPGVPEDTP-------F-EPKTRKEISKIEWFDIKDLPTKKNKK 115 (145)
T ss_pred --CCcEEEEEEEecCCCCcc-------c-CcCChhhhheEEEeeHHHhhhhhhhc
Confidence 122333333332221110 0 01112589999999999999986443
No 33
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.73 E-value=7.4e-17 Score=121.70 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=66.2
Q ss_pred EEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccc
Q psy7748 75 NVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL 150 (232)
Q Consensus 75 ~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (232)
.+|+.+|. ++.|++|||++++|||+.+||.||++||||+++. ..+.... .+...........++|.+.+......
T Consensus 12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~~ 90 (134)
T cd03675 12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIY-QWTAPDSDTTYLRFAFAAELLEHLPD 90 (134)
T ss_pred EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEE-EeecCCCCeeEEEEEEEEEECCCCCC
Confidence 45665653 3689999999999999999999999999999987 4333321 11111112344556677766543221
Q ss_pred ccccccccccCCCccceeeEeeeCccccccc
Q psy7748 151 EIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 151 ~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.. .+.|+.++.|++++++.++.
T Consensus 91 ~~---------~~~e~~~~~w~~~~el~~~~ 112 (134)
T cd03675 91 QP---------LDSGIVRAHWLTLEEILALA 112 (134)
T ss_pred CC---------CCCCceeeEEEeHHHHHhhh
Confidence 10 12478899999999999875
No 34
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.73 E-value=6.8e-17 Score=125.28 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=78.6
Q ss_pred CccceEEEEEEecCCceEEEEeccCcEEEEEEee--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece--
Q psy7748 49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-- 123 (232)
Q Consensus 49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-- 123 (232)
.++.++++++++.++ .+|+++|. ++.|++|||++++||++.+||.||++||||+.+. ..++...
T Consensus 6 ~~~~~v~~~i~~~~g-----------~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~ 74 (156)
T PRK00714 6 GYRPNVGIILLNRQG-----------QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRD 74 (156)
T ss_pred CCCCeEEEEEEecCC-----------EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCC
Confidence 367788899998773 46666663 4799999999999999999999999999999986 4433322
Q ss_pred -eeeeee-------c-CCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCC
Q psy7748 124 -LVCIHY-------S-QSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG 183 (232)
Q Consensus 124 -~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~ 183 (232)
+.+... . .......++|.+......... ..... ++.|..++.|++++++++++..
T Consensus 75 ~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~----~l~~~-~~~E~~~~~W~~~del~~~~~~ 138 (156)
T PRK00714 75 WLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEI----NLNTT-SHPEFDAWRWVSYWYPLDQVVP 138 (156)
T ss_pred eEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccc----cCCCC-CCCCeeeeEeCCHHHHHHhchh
Confidence 111110 0 011124567777664322110 00111 2248999999999999988633
No 35
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.73 E-value=2.2e-17 Score=129.26 Aligned_cols=120 Identities=19% Similarity=0.150 Sum_probs=80.3
Q ss_pred CCc-cceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-ce
Q psy7748 48 KSG-YHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YK 118 (232)
Q Consensus 48 ~~~-~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~ 118 (232)
... +.+++++++++++ .+|+++| ++|.|.+| ||++++||++++||+||++||||+.+. ..
T Consensus 26 ~~~~~~~v~v~i~~~~~-----------~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~ 94 (165)
T cd02885 26 GTLLHRAFSVFLFNSKG-----------RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLE 94 (165)
T ss_pred CCcceeEEEEEEEcCCC-----------cEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchh
Confidence 344 6777777887663 4667777 45889986 899999999999999999999999987 43
Q ss_pred ee--eceeeeeeecC-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHH
Q psy7748 119 VK--DSDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLT 189 (232)
Q Consensus 119 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~ 189 (232)
+. ...+....... ..+.+.++|.+...... .. ...|+.++.|+|++++.+++...+..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~-~~----------~~~Ev~~~~w~~~~el~~~~~~~~~~~~ 157 (165)
T cd02885 95 LVLPRFRYRAPDDGGLVEHEIDHVFFARADVTL-IP----------NPDEVSEYRWVSLEDLKELVAAAPEAFT 157 (165)
T ss_pred hccceEEEEEEcCCCceeeEEEEEEEEEeCCCC-CC----------CccceeEEEEECHHHHHHHHHhCchhcC
Confidence 32 22222111111 12345567776654221 11 1248889999999999998755544433
No 36
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2.5e-17 Score=123.24 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=73.3
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeec-ceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGF-PGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL 124 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~ 124 (232)
++.+++++.+ +++|+++|. +|.|++ |||++++||++++||+||++||||+.+. +.......
T Consensus 2 ~~~v~i~~~~-----------~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~ 70 (126)
T cd04697 2 ATYIFVFNSE-----------GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFY 70 (126)
T ss_pred eEEEEEEcCC-----------CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEE
Confidence 6777888766 456788883 578999 6999999999999999999999999987 43332222
Q ss_pred eeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
. .........++|.+... ...... ..|..++.|++++++.+++
T Consensus 71 ~---~~~~~~~~~~~f~~~~~-~~~~~~----------~~E~~~~~w~~~~el~~~~ 113 (126)
T cd04697 71 Y---DTDGNRVWGKVFSCVYD-GPLKLQ----------EEEVEEITWLSINEILQFK 113 (126)
T ss_pred e---cCCCceEEEEEEEEEEC-CCCCCC----------HhHhhheEEcCHHHHHHHh
Confidence 1 11223444566666543 222221 1478899999999999876
No 37
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.72 E-value=8.6e-17 Score=121.71 Aligned_cols=94 Identities=22% Similarity=0.130 Sum_probs=66.1
Q ss_pred EEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcc
Q psy7748 75 NVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV 149 (232)
Q Consensus 75 ~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (232)
++|+++|. +|.|.+|||+++.||++.+||+||++||||+.+. ........ ........+...++|.+....+..
T Consensus 13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~ 91 (137)
T cd03427 13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIK-FPFPGEEERYGVFVFLATEFEGEP 91 (137)
T ss_pred EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEE-EEcCCCCcEEEEEEEEECCccccc
Confidence 56676663 5799999999999999999999999999999987 54443322 111111245667777776544332
Q ss_pred cccccccccccCCCccceeeEeeeCcccccc
Q psy7748 150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.. ..|..++.|+|+++++..
T Consensus 92 ~~-----------~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 92 LK-----------ESEEGILDWFDIDDLPLL 111 (137)
T ss_pred CC-----------CCccccceEEcHhhcccc
Confidence 21 135568999999999875
No 38
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=2.7e-17 Score=122.26 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=67.2
Q ss_pred cEEEEEEee-------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-cee-eeceeeeeeecCCcEEEEEEEEEEe
Q psy7748 74 ANVLMQMRF-------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKV-KDSDLVCIHYSQSKKIILHFYALQV 144 (232)
Q Consensus 74 ~~vLl~~R~-------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (232)
+++|+++|. +|.|.||||+++.||++++||.||++||||+.+. ..+ ....+... ......++|.+..
T Consensus 12 g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~----~~~~~~~~f~~~~ 87 (122)
T cd04682 12 GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA----SPPGTEHVFVVPL 87 (122)
T ss_pred CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC----CCCceEEEEEEEE
Confidence 356777772 4799999999999999999999999999999985 221 11112211 2245667777766
Q ss_pred ecCc-ccccccccccccCCCccceeeEeeeCcccccccCCc
Q psy7748 145 EKTD-VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGL 184 (232)
Q Consensus 145 ~~~~-~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~ 184 (232)
.... .... ..|..++.|+|++++.+.....
T Consensus 88 ~~~~~~~~~----------~~E~~~~~W~~~~el~~~~~~~ 118 (122)
T cd04682 88 TAREDAILF----------GDEGQALRLMTVEEFLAHEDAI 118 (122)
T ss_pred ecCCCcccc----------CchhheeecccHHHHhhccccC
Confidence 5432 1111 2588899999999998765433
No 39
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.72 E-value=2.5e-17 Score=123.49 Aligned_cols=110 Identities=22% Similarity=0.270 Sum_probs=75.2
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee---
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV--- 125 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~--- 125 (232)
.+.+++++.. ..+.+|+++|. +|.|.+|||+++.||++.+||.||++||||+.+. ...+.....
T Consensus 3 ~~~v~~~~~~---------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~ 73 (129)
T cd04664 3 SVLVVPYRLT---------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAF 73 (129)
T ss_pred EEEEEEEEeC---------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccc
Confidence 4566666651 12467777773 6899999999999999999999999999999985 333322211
Q ss_pred eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
+.......+...++|.+.+........ +.|..++.|+|++++.+++
T Consensus 74 ~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~E~~~~~W~~~~e~~~~~ 119 (129)
T cd04664 74 VEFTDNGRVWTEHPFAFHLPSDAVVTL----------DWEHDAFEWVPPEEAAALL 119 (129)
T ss_pred cccCCCceEEEEeEEEEEcCCCCcccC----------CccccccEecCHHHHHHHH
Confidence 111111245667788887754431111 2478899999999998875
No 40
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.72 E-value=5.6e-17 Score=120.67 Aligned_cols=111 Identities=15% Similarity=0.024 Sum_probs=74.8
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c-eeeeceeeeeee
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y-KVKDSDLVCIHY 129 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~-~~~~~~~~~~~~ 129 (232)
.|++|+++.++. ...+|+.+|. .+.|.+|||+++.|||+.+||+||++||||+.+. . ..+.........
T Consensus 2 ~~g~v~~~~~~~--------~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~ 73 (122)
T cd04666 2 QAGAIPYRETGG--------EVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRS 73 (122)
T ss_pred EEEEEEEEEcCC--------ceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecC
Confidence 466677765422 2355665553 4899999999999999999999999999999976 4 443332221111
Q ss_pred -cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 130 -SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 130 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
....+...++|.+........ ....+..++.|+|++++.+++
T Consensus 74 ~~~~~~~~~~~f~~~~~~~~~~----------~~~~e~~~~~W~~~~ea~~~~ 116 (122)
T cd04666 74 KNRPPRCEVAVFPLEVTEELDE----------WPEMHQRKRKWFSPEEAALLV 116 (122)
T ss_pred CCCCceEEEEEEEEEEeccccC----------CcccCceEEEEecHHHHHHhc
Confidence 112367778888776532211 112367899999999998876
No 41
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.72 E-value=5.4e-17 Score=121.02 Aligned_cols=97 Identities=22% Similarity=0.212 Sum_probs=65.3
Q ss_pred EEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee-eeeeecCCcEEEEEEEEEEeecCcccc
Q psy7748 75 NVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL-VCIHYSQSKKIILHFYALQVEKTDVLE 151 (232)
Q Consensus 75 ~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (232)
++|+.+| ..+.|.+|||++++||++.+||+||++||||+++. ...+.... .........+.+.++|.+.........
T Consensus 13 ~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 92 (125)
T cd04689 13 KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESSWLASDG 92 (125)
T ss_pred EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcccccccC
Confidence 4566666 44799999999999999999999999999999987 44443322 111112233566677877765332110
Q ss_pred cccccccccCCCccceeeEeeeCcccc
Q psy7748 152 IEKGALTSHDYGVEVLGTVRVPLYTMG 178 (232)
Q Consensus 152 ~~~~~~~~~~~~~E~~~~~wvpl~el~ 178 (232)
.. ..+.|..++.|++++++.
T Consensus 93 ------~~-~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 93 ------PP-QADEDHLSFSWVPVSDLS 112 (125)
T ss_pred ------Cc-cCccceEEEEEccHHHcc
Confidence 01 112468899999999965
No 42
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.72 E-value=3.4e-17 Score=125.26 Aligned_cols=108 Identities=24% Similarity=0.315 Sum_probs=72.1
Q ss_pred ccceEEEEEEecCCceEEEEeccCcEEEEEEe----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748 50 GYHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL 124 (232)
Q Consensus 50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~ 124 (232)
...++++++...+ ++|+.+| +.|+|.||||++|.|||+++||.||++||||+++. ..++..+.
T Consensus 9 p~~~v~~~i~~~~------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~ 76 (145)
T COG1051 9 PLVAVGALIVRNG------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFD 76 (145)
T ss_pred cceeeeEEEEeCC------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEec
Confidence 3456666666644 5667777 34899999999999999999999999999999977 54444332
Q ss_pred eeeeecCC-cEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 125 VCIHYSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 125 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
. ...... .++...+|.+.. .+++...+ +.+...+.|+++++++..
T Consensus 77 ~-~~rd~r~~~v~~~~~~~~~-~g~~~~~~---------~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 77 D-PGRDPRGHHVSFLFFAAEP-EGELLAGD---------GDDAAEVGWFPLDELPEL 122 (145)
T ss_pred C-CCCCCceeEEEEEEEEEec-CCCcccCC---------hhhHhhcceecHhHcccc
Confidence 2 222222 344444444433 33322221 136778999999999975
No 43
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.72 E-value=2.5e-17 Score=127.89 Aligned_cols=94 Identities=31% Similarity=0.358 Sum_probs=65.0
Q ss_pred cEEEEEEe------eCCeeecceeecCCC-CCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEee
Q psy7748 74 ANVLMQMR------FDGYIGFPGGLVDAG-ESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVE 145 (232)
Q Consensus 74 ~~vLl~~R------~~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (232)
+++|+++| ++|.|++|||++++| |++++||+||++||||+++. ...+.......... ...+++|.+.+.
T Consensus 16 ~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~---~~~v~~~~~~~~ 92 (157)
T cd03426 16 LRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRS---GFVVTPVVGLVP 92 (157)
T ss_pred eEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccC---CCEEEEEEEEEC
Confidence 46788888 258999999999999 99999999999999999987 54443322221111 233444555544
Q ss_pred cC-cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 146 KT-DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 146 ~~-~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.. ..... ..|+.++.|+|++++.+.
T Consensus 93 ~~~~~~~~----------~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 93 PPLPLVLN----------PDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred CCCCCCCC----------HHHhheeEEEcHHHHhCc
Confidence 32 11111 148889999999998875
No 44
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.71 E-value=6.5e-17 Score=121.22 Aligned_cols=112 Identities=25% Similarity=0.288 Sum_probs=77.1
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD 123 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~ 123 (232)
+.++++++++.++ ++|+.+|. ++.|.+|||++++|||+.+||+||++||||+.+. .......
T Consensus 2 ~~~v~~ii~~~~~-----------~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~ 70 (134)
T PF00293_consen 2 RRAVGVIIFNEDG-----------KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLF 70 (134)
T ss_dssp EEEEEEEEEETTT-----------EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred CCEEEEEEEeCCc-----------EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceee
Confidence 6788999999873 56677773 2689999999999999999999999999999986 3333222
Q ss_pred eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
..............++|.+.+......... ...|..++.|+|++++.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~e~~~~~W~~~~el~~~~ 120 (134)
T PF00293_consen 71 SYPSPSGDPEGEIVIFFIAELPSEQSEIQP--------QDEEISEVKWVPPDELLELL 120 (134)
T ss_dssp EEEETTTESSEEEEEEEEEEEEEEESECHT--------TTTTEEEEEEEEHHHHHHHH
T ss_pred eecccCCCcccEEEEEEEEEEeCCccccCC--------CCccEEEEEEEEHHHhhhch
Confidence 222221111235566666665543311111 11389999999999999875
No 45
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=3.7e-17 Score=122.31 Aligned_cols=107 Identities=22% Similarity=0.239 Sum_probs=67.8
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL 124 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~ 124 (232)
++.+++++.+ ++||+++|. +|.|++| ||++++||++ +||+||++||||+.+. ..+... .
T Consensus 2 ~v~v~~~~~~-----------g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~-~ 68 (127)
T cd04693 2 VVHVCIFNSK-----------GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPL-F 68 (127)
T ss_pred eEEEEEEeCC-----------CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEE-E
Confidence 4555666654 457788773 4799998 8999999999 9999999999999976 222111 1
Q ss_pred eeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCC
Q psy7748 125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG 183 (232)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~ 183 (232)
.+..... .+...++|.+.......... .+|+.++.|++++++.+++..
T Consensus 69 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~E~~~~~w~~~~el~~~~~~ 116 (127)
T cd04693 69 RYFFEAE-GFDDYYLFYADVEIGKLILQ----------KEEVDEVKFVSKDEIDGLIGH 116 (127)
T ss_pred EEEeecC-CeEEEEEEEecCcccccccC----------HHHhhhEEEeCHHHHHHHHhc
Confidence 1111111 12222334333322222221 247889999999999988643
No 46
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.71 E-value=4.5e-17 Score=123.34 Aligned_cols=109 Identities=21% Similarity=0.171 Sum_probs=73.3
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL 124 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~ 124 (232)
+.+++++++++++ .+|+.+| .++.|++|||+++.||++.+||.||++||||+.+. +..+...+
T Consensus 2 ~~~v~v~~~~~~~-----------~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~ 70 (137)
T cd03424 2 PDAVAVLPYDDDG-----------KVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFY 70 (137)
T ss_pred CCEEEEEEEcCCC-----------eEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEe
Confidence 4677888888763 3444333 23589999999999999999999999999999996 44333332
Q ss_pred eeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.... ......++|.+........ . .. .+.|+.++.|++++++.+++
T Consensus 71 ~~~~---~~~~~~~~~~~~~~~~~~~------~-~~-~~~E~~~~~w~~~~el~~~~ 116 (137)
T cd03424 71 PSPG---FSDERIHLFLAEDLSPGEE------G-LL-DEGEDIEVVLVPLDEALELL 116 (137)
T ss_pred cCCc---ccCccEEEEEEEccccccc------C-CC-CCCCeeEEEEecHHHHHHHH
Confidence 2211 1233455666665443210 0 01 12479999999999999875
No 47
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=7e-17 Score=120.75 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=69.9
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEe-e--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeee
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMR-F--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVC 126 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~ 126 (232)
..+|++++++.++ ++|+.+| . +|.|.+|||+++.|||+++||.||++||||+.+. .......+..
T Consensus 2 ~~~~~~~v~~~~~-----------~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~ 70 (127)
T cd04670 2 TVGVGGLVLNEKN-----------EVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAH 70 (127)
T ss_pred eeEEEEEEEcCCC-----------eEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecC
Confidence 4577888888663 3455444 4 6899999999999999999999999999999987 4333222111
Q ss_pred eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 127 IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.. ......++|.+.+...... . ..+ ..|..++.|++++++.+.
T Consensus 71 ~~---~~~~~~~~~~~~~~~~~~~------~-~~~-~~E~~~~~w~~~~el~~~ 113 (127)
T cd04670 71 PG---AFGKSDLYFICRLKPLSFD------I-NFD-TSEIAAAKWMPLEEYISQ 113 (127)
T ss_pred CC---CcCceeEEEEEEEccCcCc------C-CCC-hhhhheeEEEcHHHHhcc
Confidence 11 1122334455554321110 0 011 247889999999999764
No 48
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.71 E-value=1.2e-16 Score=120.02 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=72.5
Q ss_pred CccceEEEEEEecCCceEEEEeccCcEEEEEEe----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748 49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD 123 (232)
Q Consensus 49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~ 123 (232)
..+.++++++++.+ .+|+.+| .+|.|++|||+++.||++++||+||++||||+++. ..++..
T Consensus 11 ~~~~~v~~ii~~~~------------~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~- 77 (130)
T cd04511 11 NPKIIVGCVPEWEG------------KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAV- 77 (130)
T ss_pred CCcEEEEEEEecCC------------EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEE-
Confidence 34455666665532 4666666 45799999999999999999999999999999976 333222
Q ss_pred eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748 124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD 179 (232)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~ 179 (232)
+. ....+...++|.+......... +.|..++.|+++++++.
T Consensus 78 ~~----~~~~~~~~~~f~~~~~~~~~~~-----------~~e~~~~~~~~~~~l~~ 118 (130)
T cd04511 78 YS----VPHISQVYMFYRARLLDLDFAP-----------GPESLEVRLFTEEEIPW 118 (130)
T ss_pred Ee----cCCceEEEEEEEEEEcCCcccC-----------CcchhceEEECHHHCCc
Confidence 11 1233557788888776543221 24678899999999973
No 49
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=7.7e-17 Score=117.99 Aligned_cols=91 Identities=24% Similarity=0.282 Sum_probs=66.1
Q ss_pred cEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccc
Q psy7748 74 ANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEI 152 (232)
Q Consensus 74 ~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (232)
+.+|+++|..|.|++|||++++||++.+||.||++||||+.+. ...+... .. .....++|.+.+.......
T Consensus 11 ~~vLlv~r~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~-----~~--~~~~~~~f~~~~~~~~~~~- 82 (112)
T cd04667 11 GRVLLVRKSGSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHV-----DG--GSTRHHVFVASVPPSAQPK- 82 (112)
T ss_pred CEEEEEEcCCCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEE-----eC--CCEEEEEEEEEcCCcCCCC-
Confidence 3678888888999999999999999999999999999999976 4322211 11 1334466777654332111
Q ss_pred ccccccccCCCccceeeEeeeCccccccc
Q psy7748 153 EKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 153 ~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
...|..++.|+|++++.++.
T Consensus 83 ---------~~~e~~~~~W~~~~el~~~~ 102 (112)
T cd04667 83 ---------PSNEIADCRWLSLDALGDLN 102 (112)
T ss_pred ---------CchheeEEEEecHHHhhhcc
Confidence 12478899999999998864
No 50
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.9e-16 Score=118.03 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=73.8
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec----ee
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS----DL 124 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~----~~ 124 (232)
+.++++++++.+ +.+|+++|. .|.|.+|||+++.||++++||.||++||||+++. ..++.. .+
T Consensus 2 ~~~v~~ii~~~~-----------~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~ 70 (129)
T cd04676 2 LPGVTAVVRDDE-----------GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVH 70 (129)
T ss_pred cceEEEEEECCC-----------CeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccc
Confidence 346666766654 356777774 4899999999999999999999999999999876 433211 11
Q ss_pred eeeeecCC-cEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 125 VCIHYSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 125 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.+...... .+...++|.+....+..... ..|..++.|++++++.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~e~~~~~w~~~~el~~~~ 118 (129)
T cd04676 71 VVTYPNGDVRQYLDITFRCRVVGGELRVG----------DDESLDVAWFDPDGLPPLL 118 (129)
T ss_pred eeecCCCCcEEEEEEEEEEEeeCCeecCC----------CCceeEEEEEChhhCcccc
Confidence 11111111 25566667666554332111 2477899999999999863
No 51
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.6e-16 Score=117.16 Aligned_cols=94 Identities=23% Similarity=0.304 Sum_probs=63.7
Q ss_pred EEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ceeeeceeeeeeecCCcEEEEEEEEEEeecCccc
Q psy7748 75 NVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK---YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL 150 (232)
Q Consensus 75 ~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (232)
++|+.+| ..+.|.+|||++++||++++||.||++||||+.+. ...+.............+...++|.+.... ...
T Consensus 13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~ 91 (118)
T cd04690 13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAELTG-EPV 91 (118)
T ss_pred eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcccC-CcC
Confidence 4555454 56899999999999999999999999999999875 222222221111111235677778776643 111
Q ss_pred ccccccccccCCCccceeeEeeeCcccccc
Q psy7748 151 EIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 151 ~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
. +.|..++.|+|++++.+.
T Consensus 92 ~-----------~~e~~~~~W~~~~e~~~~ 110 (118)
T cd04690 92 P-----------AAEIEEIRWVDYDDPADD 110 (118)
T ss_pred C-----------CchhhccEEecHHHcccc
Confidence 1 147889999999997554
No 52
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.70 E-value=4.8e-17 Score=122.52 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=65.3
Q ss_pred cEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcc
Q psy7748 74 ANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV 149 (232)
Q Consensus 74 ~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (232)
+++|+++|. +|.|.+|||+++.||++++||.||++||||+.+. ...+.... .. ..+.+.++|.+....+..
T Consensus 12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~---~~--~~~~~~~~f~~~~~~~~~ 86 (131)
T cd03429 12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQP---WP--FPSSLMLGFTAEADSGEI 86 (131)
T ss_pred CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecC---CC--CCceEEEEEEEEEcCCcc
Confidence 356666663 4799999999999999999999999999999987 44332211 11 113445667776654332
Q ss_pred cccccccccccCCCccceeeEeeeCcccccc
Q psy7748 150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
... +.|+.++.|+|++++.++
T Consensus 87 ~~~----------~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 87 VVD----------DDELEDARWFSRDEVRAA 107 (131)
T ss_pred cCC----------chhhhccEeecHHHHhhc
Confidence 221 247889999999999886
No 53
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.69 E-value=4.2e-16 Score=129.79 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=67.1
Q ss_pred cEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcc
Q psy7748 74 ANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV 149 (232)
Q Consensus 74 ~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (232)
+++|+.+|. +|.|++|||++|+|||+++||+||++||||+++. ...+... .. ...+..+++|.+....+++
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~---~~--~~p~~lm~~f~a~~~~~~~ 217 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQ---PW--PFPHSLMLGFHADYDSGEI 217 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeE---ee--cCCCeEEEEEEEEecCCcc
Confidence 356666652 3799999999999999999999999999999987 5433221 11 1224566777777654443
Q ss_pred cccccccccccCCCccceeeEeeeCccccccc
Q psy7748 150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
... +.|+.++.|+++++++.+.
T Consensus 218 ~~~----------~~Ei~~a~W~~~del~~lp 239 (256)
T PRK00241 218 VFD----------PKEIADAQWFRYDELPLLP 239 (256)
T ss_pred cCC----------cccEEEEEEECHHHCcccC
Confidence 222 2488999999999998753
No 54
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=2.7e-16 Score=118.39 Aligned_cols=110 Identities=20% Similarity=0.211 Sum_probs=68.7
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhhCCCC-c-ceeeeceee-eee
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNP-K-YKVKDSDLV-CIH 128 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~-~-~~~~~~~~~-~~~ 128 (232)
++++++++.+ .||+.++.. +.|.||||++++||++.+||+||++||||+.+ . ...+..... ...
T Consensus 2 ~~~~ii~~~~------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~ 69 (131)
T cd04686 2 AVRAIILQGD------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPW 69 (131)
T ss_pred cEEEEEEECC------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccc
Confidence 4566666643 456656644 78999999999999999999999999999987 3 322222211 111
Q ss_pred ecC---CcEEEEEEEEEEeecCcccccccccccccC-CCccceeeEeeeCcccccc
Q psy7748 129 YSQ---SKKIILHFYALQVEKTDVLEIEKGALTSHD-YGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 129 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~wvpl~el~~~ 180 (232)
... ..+...++|.|.+........ ..+ +......+.|+|++++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 70 RKPDADIFHMISYYYLCEVDAELGAQQ------LEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred cCCCCceeEEEEEEEEEEEcCCcCCcc------cchhhHhcCCCcEEecHHHHHHh
Confidence 111 224567788887754321110 000 0012356899999988764
No 55
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.68 E-value=2.4e-16 Score=118.91 Aligned_cols=98 Identities=13% Similarity=0.012 Sum_probs=67.8
Q ss_pred CcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCcceeeec----eeeeeeec-----CCcEEEEEEE
Q psy7748 73 RANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDS----DLVCIHYS-----QSKKIILHFY 140 (232)
Q Consensus 73 ~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~ 140 (232)
+..+|+.+|. .|.|.||||++++|||+.+||.||++||||+.+...++.. .+.+.... ...+...++|
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 91 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFF 91 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEE
Confidence 3456666663 3689999999999999999999999999999876221111 11111110 1123567888
Q ss_pred EEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 141 ALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.+....+.+... .|..++.|++++++++.+
T Consensus 92 ~~~~~~g~~~~~-----------~e~~~~~W~~~~el~~~l 121 (132)
T cd04661 92 KARYMSGQFELS-----------QNQVDFKWLAKEELQKYL 121 (132)
T ss_pred EEEEecCccccC-----------CCcceeEecCHHHHHhhc
Confidence 888766544321 478899999999999865
No 56
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.68 E-value=3.5e-16 Score=124.07 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=70.7
Q ss_pred ccceEEEEEEecCCceEEEEeccCcEEEEEEee------CCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeee
Q psy7748 50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKD 121 (232)
Q Consensus 50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~ 121 (232)
...++.+++++.+ +.+|+++|. +|.| .+|||++++|||+++||+|||+||||+.+. .....
T Consensus 36 ~h~~~~v~v~~~~-----------g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~ 104 (180)
T PRK15393 36 RHRATYIVVHDGM-----------GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHG 104 (180)
T ss_pred ceEEEEEEEECCC-----------CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceece
Confidence 3455555666654 457788883 3555 589999999999999999999999999875 43222
Q ss_pred ceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 122 SDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
..+. .........++|.+... +..... ..|..++.|++++++.+++
T Consensus 105 ~~~~---~~~~~~~~~~~f~~~~~-~~~~~~----------~~E~~~~~W~~~~el~~~~ 150 (180)
T PRK15393 105 QFYF---EDENCRVWGALFSCVSH-GPFALQ----------EEEVSEVCWMTPEEITARC 150 (180)
T ss_pred eEEe---cCCCceEEEEEEEEEeC-CCCCCC----------hHHeeEEEECCHHHHhhhh
Confidence 2211 11222344455655432 222111 2588999999999999875
No 57
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.68 E-value=1.9e-16 Score=123.00 Aligned_cols=118 Identities=17% Similarity=0.097 Sum_probs=79.3
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-ce-
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YK- 118 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~- 118 (232)
.-++.++++++++.+ +++|+++| ++|.|++| ||+++.|| .+||+||++||||+.+. ..
T Consensus 24 g~~h~~v~v~v~~~~-----------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l 90 (158)
T TIGR02150 24 TPLHRAFSVFLFNEE-----------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPL 90 (158)
T ss_pred CCeEEEEEEEEEcCC-----------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccce
Confidence 456677788888765 35678888 35899987 79999999 49999999999999987 43
Q ss_pred -eeec-eeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHHH
Q psy7748 119 -VKDS-DLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTH 190 (232)
Q Consensus 119 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~ 190 (232)
.+.. .+.....+ ..+.+.++|.+.... .+... +.|+.++.|++++++.+++...+..+..
T Consensus 91 ~~~~~~~~~~~~~~-g~~~~~~~f~~~~~~-~~~~~----------~~Ev~~~~W~~~~el~~~~~~~~~~~~p 152 (158)
T TIGR02150 91 TVLPRFSYRARDAW-GEHELCPVFFARAPV-PLNPN----------PEEVAEYRWVSLEELKEILKAPWAGFSP 152 (158)
T ss_pred EEcceEEEEEecCC-CcEEEEEEEEEecCC-cccCC----------hhHeeeEEEeCHHHHHHHHhcCccccCH
Confidence 1211 12111111 235566777776543 22221 2489999999999999987655544433
No 58
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.66 E-value=4e-16 Score=124.18 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=76.7
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-cee
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YKV 119 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~~ 119 (232)
..++.++++++++.++ +||+++| ++|.|.+| ||++++||++++||+||++||||+++. ...
T Consensus 31 ~~~h~av~v~i~~~~g-----------~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~ 99 (184)
T PRK03759 31 TPLHLAFSCYLFDADG-----------RLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLEL 99 (184)
T ss_pred CCeeeEEEEEEEcCCC-----------eEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccccc
Confidence 3457778888888663 4566666 35677765 799999999999999999999999986 322
Q ss_pred eeceeeeee--ecC-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCch
Q psy7748 120 KDSDLVCIH--YSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLP 185 (232)
Q Consensus 120 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~ 185 (232)
....+.+.. ..+ ..+...++|.+... +.+... ..|+.++.|+|++++.+++...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~vf~~~~~-~~~~~~----------~~Ev~~~~W~~~~el~~~i~~~~ 157 (184)
T PRK03759 100 VLPDFRYRATDPNGIVENEVCPVFAARVT-SALQPN----------PDEVMDYQWVDPADLLRAVDATP 157 (184)
T ss_pred ccceEEEEEecCCCceeeEEEEEEEEEEC-CCCCCC----------hhHeeeEEEECHHHHHHHHHhCC
Confidence 111121111 111 12345567777654 222221 24889999999999999865443
No 59
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=8.4e-16 Score=116.01 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=74.6
Q ss_pred ceEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCC-c-cee-eec
Q psy7748 52 HASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGFPGGLVDAGESPLEALNRELNEEINLNP-K-YKV-KDS 122 (232)
Q Consensus 52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~-~-~~~-~~~ 122 (232)
+++.+++++.++ .+|++++. ++.|.+|||+++.||++.+||.||++||||+.+ . ... ...
T Consensus 1 ~~~~~~i~~~~g-----------~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~ 69 (133)
T cd04685 1 RAARVVLLDPDD-----------RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRR 69 (133)
T ss_pred CeEEEEEEcCCC-----------eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEE
Confidence 367788888764 45665552 368999999999999999999999999999998 4 322 222
Q ss_pred eeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 123 DLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.+.+.......+...++|.+........... .. ..+..+...+.|++++++.+.
T Consensus 70 ~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~---~~-~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 70 DAAFTFLGVDGRQEERFFLARTPRTEPSPAG---WT-ALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEecCccceeeEEEEEEEcCCccccCCC---CC-hhhhhhcccccCCCHHHHhhC
Confidence 2223332223345667888877643222111 00 011124568999999999875
No 60
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.65 E-value=6.8e-16 Score=122.44 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=78.5
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc-ce-
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK-YK- 118 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~- 118 (232)
.-+++++.++++..+.. ..+.|++|+| ++|+| .+|||+++.||++.+||+||++||||+.+. ..
T Consensus 29 g~~h~~v~~~~~~~~~~-------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~ 101 (180)
T cd03676 29 GLVTYGVHLNGYVRDED-------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ 101 (180)
T ss_pred CceEEEEEEEEEEEcCC-------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence 45667777655543311 1257899999 56999 699999999999999999999999999976 33
Q ss_pred e--ee-ceeeee-eecCCcEEEEEEEEEEeecCc-ccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 119 V--KD-SDLVCI-HYSQSKKIILHFYALQVEKTD-VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 119 ~--~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
+ .. ..+.+. ......+...++|.+.+.... +.+ .+.|+.++.|+|++++.+++
T Consensus 102 l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~----------~~~Ev~~~~~~~~~el~~~l 159 (180)
T cd03676 102 LKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAP----------QDGEVESFRLLTIDEVLRAL 159 (180)
T ss_pred ceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCC----------CCCcEeEEEEECHHHHHHHH
Confidence 1 11 122221 111123456677776653222 111 12589999999999999886
No 61
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=7.6e-16 Score=114.99 Aligned_cols=94 Identities=26% Similarity=0.232 Sum_probs=62.4
Q ss_pred EEEEEEee------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748 75 NVLMQMRF------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT 147 (232)
Q Consensus 75 ~vLl~~R~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (232)
.+|+++|. +|.|++|||++++||++.+||.||++||||+.+. ......... .......+...++|.+.....
T Consensus 14 ~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 92 (129)
T cd04699 14 RILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVT-HEDSGVYNVIYLVFVCEALSG 92 (129)
T ss_pred cEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEE-EcCCCEEEEEEEEEEeeecCC
Confidence 56777773 5789999999999999999999999999999887 433211111 111111345555666544322
Q ss_pred cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.... +.|..++.|+|++++..+
T Consensus 93 ~~~~-----------~~e~~~~~w~~~~el~~~ 114 (129)
T cd04699 93 AVKL-----------SDEHEEYAWVTLEELAIL 114 (129)
T ss_pred cccC-----------ChhheEEEEecHHHhhhh
Confidence 1111 147788999999998654
No 62
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.65 E-value=1.5e-15 Score=116.89 Aligned_cols=118 Identities=23% Similarity=0.211 Sum_probs=78.2
Q ss_pred EEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccc
Q psy7748 75 NVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIE 153 (232)
Q Consensus 75 ~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (232)
.+|+.+++...|++|||++++||++++||+||++||||+.+. +..++..+.... ......++|.+........
T Consensus 36 ~~LL~~~~~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~---~~~~~~~vf~A~~~~~~~~--- 109 (156)
T TIGR02705 36 QWLLTEHKRRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGE---STDFVKDVYFAEVSALESK--- 109 (156)
T ss_pred EEEEEEEcCCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCC---CcEEEEEEEEEEEeccccC---
Confidence 345555556679999999999999999999999999999987 655554333222 3466777777776633211
Q ss_pred cccccccCCCccceeeE-eeeCcccccccCCchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy7748 154 KGALTSHDYGVEVLGTV-RVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKI 209 (232)
Q Consensus 154 ~~~~~~~~~~~E~~~~~-wvpl~el~~~i~~~~~~l~~~~i~~~~~~l~~~l~~~~~ 209 (232)
.|.+++. +++++++++++..-+.| .--+-++.-.+.+..++..++
T Consensus 110 ----------~e~~E~~~~~~~~~~~~~~~~g~~~-s~~~~d~~~~~~~~~~~~~~~ 155 (156)
T TIGR02705 110 ----------DDYLETKGPVLLQEIPDIIKADPRF-SFIMKDDVLLKCLERAKHIGF 155 (156)
T ss_pred ----------CCceeeEeEEEHHHHHHHHhcCCcc-cEEEchHHHHHHHHHHHHccC
Confidence 3667777 79999999987544421 111223333445555555544
No 63
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.65 E-value=1.4e-15 Score=121.40 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecceeecCCC-CCHHHHHhHHHHHhhCCCCc-cee
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFPGGLVDAG-ESPLEALNRELNEEINLNPK-YKV 119 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~-~~~ 119 (232)
..++.+++++++..++. ..+|+++| +.|.|+||||++|++ |++++||+||++||||+.+. +..
T Consensus 27 ~~~~~aavvl~l~~~~~---------~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~ 97 (190)
T PRK10707 27 LNQRQAAVLIPIVRRPQ---------PTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEV 97 (190)
T ss_pred ccCCCeEEEEEEEECCC---------CEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEE
Confidence 34566777776653321 24566664 448999999999986 58999999999999999988 655
Q ss_pred eeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 120 KDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
+...+...... ....+.+.+.+...... ..+ .+|+.++.|+|++++.++.
T Consensus 98 lg~l~~~~~~~---~~~~~~~v~~~~~~~~~--------~~d-~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 98 IGVLPPVDSST---GYQVTPVVGIIPPDLPY--------RAN-EDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEeeeeeccC---CcEEEEEEEEECCCCCC--------CCC-hhhhheEEEEeHHHHhCcc
Confidence 55544322221 12233333333222110 112 2589999999999987763
No 64
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.64 E-value=2.8e-15 Score=111.08 Aligned_cols=56 Identities=29% Similarity=0.445 Sum_probs=45.5
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEe--------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMR--------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 116 (232)
++++|+++.+.. ...||+.+| ..+.|++|||+++.||++.+||+||++||||+++.
T Consensus 2 ~~g~v~~~~~~~--------~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDG--------RIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCC--------cEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 577777775532 335677763 34799999999999999999999999999999876
No 65
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.64 E-value=5.2e-15 Score=111.64 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=63.2
Q ss_pred cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748 74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT 147 (232)
Q Consensus 74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (232)
+.+|+++|. +|.|+||||++++||++.+||.||++||||+.+. ...+... .+.........++|.+....+
T Consensus 15 ~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 91 (135)
T PRK10546 15 GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASH---QREVSGRRIHLHAWHVPDFHG 91 (135)
T ss_pred CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEE---EEecCCcEEEEEEEEEEEecC
Confidence 357777772 4799999999999999999999999999999987 3322211 111122344556666654333
Q ss_pred cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.+.. .|..++.|++++++.++
T Consensus 92 ~~~~------------~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 92 ELQA------------HEHQALVWCTPEEALRY 112 (135)
T ss_pred cccc------------cccceeEEcCHHHcccC
Confidence 2211 24568899999999886
No 66
>PLN03143 nudix hydrolase; Provisional
Probab=99.63 E-value=5.9e-15 Score=124.04 Aligned_cols=143 Identities=13% Similarity=0.068 Sum_probs=81.4
Q ss_pred ccCcc-ccccccCCcccccccCCccceEEEEEE-ecCCceEEEEeccCcEEEEEEeeC---CeeecceeecCCC-CCHHH
Q psy7748 28 STNLN-DFIELTQSDLKDDKYKSGYHASHCMIF-AYNDDKIFATYTARANVLMQMRFD---GYIGFPGGLVDAG-ESPLE 101 (232)
Q Consensus 28 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~vi~-~~~~~~v~~~~~~~~~vLl~~R~~---g~w~lPgG~ve~g-Es~~~ 101 (232)
|++++ +.+.+++|............+++++++ +.++..- ..++.|.|++ ..|+||||.+|++ |++++
T Consensus 104 flkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~-------VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~ 176 (291)
T PLN03143 104 FLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETY-------AVLTEQVRVPVGKFVLELPAGMLDDDKGDFVG 176 (291)
T ss_pred EEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEE-------EEEEEeEecCCCcEEEEecccccCCCCCCHHH
Confidence 45777 888889886544333333345555544 3332210 1234566643 3799999999985 79999
Q ss_pred HHhHHHHHhhCCCCc---ceeee---------ceeeeeeecCCcEEEEEEEEEEeecCcccc--cccccccccCCCccce
Q psy7748 102 ALNRELNEEINLNPK---YKVKD---------SDLVCIHYSQSKKIILHFYALQVEKTDVLE--IEKGALTSHDYGVEVL 167 (232)
Q Consensus 102 aa~REl~EEtGl~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~E~~ 167 (232)
||+||++||||+.+. +..+. ..+.+.+. .....++|.+......... .........++ .|.+
T Consensus 177 aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~---~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~de-gE~I 252 (291)
T PLN03143 177 TAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGG---CDEEISLFLYRGHVDKETIRQLQGKETGLRDH-GELI 252 (291)
T ss_pred HHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCc---cCCeEEEEEEccccchhhhcccccccCCCCCC-CcEE
Confidence 999999999999864 22221 22222222 2234445544322111100 00001112233 5899
Q ss_pred eeEeeeCccccccc
Q psy7748 168 GTVRVPLYTMGDGF 181 (232)
Q Consensus 168 ~~~wvpl~el~~~i 181 (232)
++.|+|++++..++
T Consensus 253 ev~~vpl~eiw~~~ 266 (291)
T PLN03143 253 KVHVVPYRELWRMT 266 (291)
T ss_pred EEEEEEHHHHHHHH
Confidence 99999999977764
No 67
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.61 E-value=1.8e-14 Score=107.46 Aligned_cols=92 Identities=25% Similarity=0.358 Sum_probs=62.8
Q ss_pred cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748 74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT 147 (232)
Q Consensus 74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (232)
+++|+++|. +|.|+||||++++||++.+||.||++||||+++. ....... .+.........++|.+.....
T Consensus 16 ~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 92 (129)
T PRK10776 16 NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKL---EYEFPDRHITLWFWLVESWEG 92 (129)
T ss_pred CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEE---EeeCCCcEEEEEEEEEEEECC
Confidence 367888883 4899999999999999999999999999999876 3322111 111122345556666654322
Q ss_pred cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.+. ..|..++.|+++++++..
T Consensus 93 ~~~------------~~e~~~~~W~~~~~l~~~ 113 (129)
T PRK10776 93 EPW------------GKEGQPGRWVSQVALNAD 113 (129)
T ss_pred ccC------------CccCCccEEecHHHCccC
Confidence 211 125667899999999874
No 68
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=4.9e-15 Score=113.13 Aligned_cols=53 Identities=36% Similarity=0.460 Sum_probs=44.0
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 116 (232)
++++++++.+ +++|+++| ++|.|++|||++++||++++||+||++||||+.+.
T Consensus 3 ~v~viv~~~~-----------~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~ 61 (143)
T cd04694 3 GVAVLLQSSD-----------QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD 61 (143)
T ss_pred EEEEEEEcCC-----------CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence 4555556654 46778877 35799999999999999999999999999999876
No 69
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.60 E-value=8.6e-15 Score=126.96 Aligned_cols=99 Identities=25% Similarity=0.312 Sum_probs=66.1
Q ss_pred cEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece---eeeeeec--CCcEEEEEEEEEE
Q psy7748 74 ANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD---LVCIHYS--QSKKIILHFYALQ 143 (232)
Q Consensus 74 ~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~---~~~~~~~--~~~~~~~~~~~~~ 143 (232)
+.||+.+|. +|.|.+|||++++|||+++||+||++||||+++. ..+.... ..+.... ...+...++|.+.
T Consensus 214 g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~~~~~i~~~f~~~ 293 (340)
T PRK05379 214 GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSLRGRTITHAFLFE 293 (340)
T ss_pred CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCCCCcEEEEEEEEE
Confidence 357777773 4789999999999999999999999999999876 3222111 1111111 1235566777776
Q ss_pred eecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 144 VEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
+..+..... . .++|..++.|+|++++..+
T Consensus 294 ~~~~~~~~~-------~-~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 294 FPAGELPRV-------K-GGDDADKARWVPLAELLAM 322 (340)
T ss_pred ecCCccCcc-------C-CCCceeeEEEEEHHHhhhh
Confidence 654331110 0 1247889999999998864
No 70
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.59 E-value=2e-14 Score=106.91 Aligned_cols=101 Identities=22% Similarity=0.121 Sum_probs=58.0
Q ss_pred EEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccc
Q psy7748 75 NVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIE 153 (232)
Q Consensus 75 ~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (232)
.|++.+...+.|+||||++++||++.+||+||++||||+.+. .......+..... ......+++.+...........
T Consensus 15 ~ll~~r~~~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~ 92 (126)
T cd04663 15 ELLVFEHPLAGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFY--QKRHFWHLTLCEVDQDLPDSWV 92 (126)
T ss_pred EEEEEEcCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEe--eccEEEEEEEEEecCCCccccc
Confidence 344444444679999999999999999999999999999973 1111111111111 1123333344433211111111
Q ss_pred cccccccCCCccceeeEeeeCcccccc
Q psy7748 154 KGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 154 ~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.. ....+.+.+.+.|+|++++.++
T Consensus 93 --~~-~~~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 93 --HF-VQDDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred --Cc-ccCCCCceEEEEEEcccccccc
Confidence 11 1112346788899999999765
No 71
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=3.2e-14 Score=106.14 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=64.6
Q ss_pred cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748 74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT 147 (232)
Q Consensus 74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (232)
+.+|+++|. +|.|+||||.++.||++++|++||++||||+.+. ........ +..+..+...++|.+....+
T Consensus 16 ~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~---h~~~~~~~~~~~~~~~~~~~ 92 (128)
T TIGR00586 16 GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEY---EFYPRHITLWFWLLERWEGG 92 (128)
T ss_pred CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEE---EECCCcEEEEEEEEEEEcCC
Confidence 357888883 4799999999999999999999999999999876 32222111 11223456677777765433
Q ss_pred cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.... .+..++.|++++++.+.
T Consensus 93 ~~~~------------~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 93 PPGK------------EGQPEEWWVLVGLLADD 113 (128)
T ss_pred CcCc------------ccccccEEeCHHHCCcc
Confidence 2211 23456799999999985
No 72
>KOG3041|consensus
Probab=99.58 E-value=1.5e-14 Score=112.19 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=96.0
Q ss_pred ceeeee-ecCCccCcc-ccccccCCccccccc-CCcc------ceEEEEEEecCCceEEEEeccCcEEEEEEeeC---C-
Q psy7748 18 LAATEV-YGRPSTNLN-DFIELTQSDLKDDKY-KSGY------HASHCMIFAYNDDKIFATYTARANVLMQMRFD---G- 84 (232)
Q Consensus 18 ~~~~~v-y~~~~~~~~-~~~~~~~~~~~~~~~-~~~~------~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~---g- 84 (232)
+....+ +.++|++++ -.+..|.|....+.. .+.. .+++++++-.. +...++++++.++ |
T Consensus 31 ~~~~~ie~~~kWi~Lkkv~~qD~~GKir~wes~~Rttr~ea~~dgVaIl~il~~--------dG~~~ivL~kQfRpP~Gk 102 (225)
T KOG3041|consen 31 IEVEDIESDGKWIRLKKVLYQDPTGKIRDWESVQRTTRVEARADGVAILAILES--------DGKPYIVLVKQFRPPTGK 102 (225)
T ss_pred eeeecccCCccEEEEEEEEEEcCCCceeeeehheecccccccCCeEEEEEEEec--------CCcEEEEEEEeecCCCCc
Confidence 455555 899999999 788889988766665 1111 22333332222 2334667766643 4
Q ss_pred -eeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCC
Q psy7748 85 -YIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDY 162 (232)
Q Consensus 85 -~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (232)
..+||+|.++.||+++.||+|||+|||||..+ ...-...+..++.. +++.+..++..+.+.. +.+.....-+
T Consensus 103 ~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGlt-n~~~~iv~v~idg~~p-----Enqrp~q~le 176 (225)
T KOG3041|consen 103 ICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLT-NCNLCIVVVDIDGDVP-----ENQRPVQQLE 176 (225)
T ss_pred EEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCC-CCceEEEEEEecCCCc-----cccCccccCC
Confidence 67999999999999999999999999999965 33333334444443 3444444444433322 2222223333
Q ss_pred CccceeeEeeeCccccccc
Q psy7748 163 GVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 163 ~~E~~~~~wvpl~el~~~i 181 (232)
+.|.++++-+|+++|.+.+
T Consensus 177 dgEfIev~~i~~~~L~~~~ 195 (225)
T KOG3041|consen 177 DGEFIEVFLIPLSELWREL 195 (225)
T ss_pred CCceEEEEEeeHHHHHHHH
Confidence 4699999999999988764
No 73
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.58 E-value=2.6e-14 Score=104.83 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=72.7
Q ss_pred eEEEEEEecCCceEEEEeccCcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeee
Q psy7748 53 ASHCMIFAYNDDKIFATYTARANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIH 128 (232)
Q Consensus 53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~ 128 (232)
++++++++.+ +++|+++|. .|.|.+|||+++.||++.+||.||+.||+|+.+. ........ ...
T Consensus 2 ~~~~i~~~~~-----------~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~-~~~ 69 (123)
T cd02883 2 AVGAVILDED-----------GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYE-VES 69 (123)
T ss_pred ceEEEEECCC-----------CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEE-eec
Confidence 4566666654 346777775 4899999999999999999999999999999875 22222111 111
Q ss_pred ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 129 YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.........++|.+........ .....|.....|++++++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 70 PDEGEHAVVFVFLARLVGGEPT---------LLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred cCCCceEEEEEEEEEeCCCCcC---------CCCCCccceEEEEcHHHCccc
Confidence 1123466777787776644321 011246778899999998874
No 74
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.58 E-value=3.4e-14 Score=104.87 Aligned_cols=90 Identities=22% Similarity=0.164 Sum_probs=61.8
Q ss_pred EEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccc
Q psy7748 75 NVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIE 153 (232)
Q Consensus 75 ~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (232)
.+|+.++..+.|++|||+++.||++++||+||++||||+.+. ...+..+..... .......+|.+..........
T Consensus 12 ~vLl~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~---~~~~~~~~y~a~~~~~~~~~~- 87 (118)
T cd04665 12 GLLLVRHKDRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLF---ESGFETLVYPAVSAQLEEKAS- 87 (118)
T ss_pred EEEEEEeCCCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCC---CCcEEEEEEEEEEEecccccc-
Confidence 456666667899999999999999999999999999999987 544443322211 123445556665554433212
Q ss_pred cccccccCCCccceeeEeeeCccc
Q psy7748 154 KGALTSHDYGVEVLGTVRVPLYTM 177 (232)
Q Consensus 154 ~~~~~~~~~~~E~~~~~wvpl~el 177 (232)
+.|+....|++....
T Consensus 88 ---------~~E~~~~~~~~~~~~ 102 (118)
T cd04665 88 ---------YLETDGPVLFKNEPE 102 (118)
T ss_pred ---------cccccCcEEeccCCc
Confidence 257888888887554
No 75
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=2.3e-13 Score=100.29 Aligned_cols=34 Identities=35% Similarity=0.639 Sum_probs=32.5
Q ss_pred CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748 83 DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116 (232)
Q Consensus 83 ~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 116 (232)
+|.|+||||++++||++.+||.||++||||+.+.
T Consensus 28 ~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 28 RGKLALPGGFIELGETWQDAVARELLEETGVAVD 61 (118)
T ss_pred CCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence 4899999999999999999999999999999986
No 76
>PLN02709 nudix hydrolase
Probab=99.53 E-value=4.1e-14 Score=114.40 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=62.8
Q ss_pred cEEEEEEe------eCCeeecceeecCCCC-CHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEee
Q psy7748 74 ANVLMQMR------FDGYIGFPGGLVDAGE-SPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVE 145 (232)
Q Consensus 74 ~~vLl~~R------~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (232)
..+|+.+| ++|.|+||||++|++| ++.+||+||+.||+|+... ..+++........ . ...++-|.+.+.
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~--s-g~~V~P~V~~~~ 127 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNK--K-GMSVAPVIGFLH 127 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECC--C-CCEEEEEEEEec
Confidence 36777777 5699999999999985 7999999999999999887 5555443332221 1 233444444443
Q ss_pred c---CcccccccccccccCCCccceeeEeeeCccccc
Q psy7748 146 K---TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD 179 (232)
Q Consensus 146 ~---~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~ 179 (232)
. ..+... ..|+.+++|+|++.+.+
T Consensus 128 ~~~~~~~~~n----------p~EV~~vf~vPL~~ll~ 154 (222)
T PLN02709 128 DKKAFKPLPN----------PAEVEEIFDVPLEMFLK 154 (222)
T ss_pred CCCCccccCC----------hhhhheeEEecHHHHhC
Confidence 2 111111 15899999999987764
No 77
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.52 E-value=1.1e-13 Score=102.04 Aligned_cols=92 Identities=28% Similarity=0.426 Sum_probs=64.3
Q ss_pred cEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748 74 ANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT 147 (232)
Q Consensus 74 ~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (232)
+.+|+++| ++|.|.||||+++.+|++++||.||++||||+.+. ...+... .+..+..+...++|.+.....
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATV---EHDYPDKRVTLHVFLVELWSG 89 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEE---EeeCCCCeEEEEEEEEeeeCC
Confidence 45677776 35799999999999999999999999999999876 3222211 111123355667777765433
Q ss_pred cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
... ..|..++.|++++++.+.
T Consensus 90 ~~~------------~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 90 EPQ------------LLEHQELRWVPPEELDDL 110 (124)
T ss_pred Ccc------------cccCceEEEeeHHHcccC
Confidence 221 135678999999999875
No 78
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.49 E-value=3.7e-14 Score=117.10 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=68.5
Q ss_pred eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccccccccccc
Q psy7748 82 FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH 160 (232)
Q Consensus 82 ~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (232)
++|.|.+-+|.||+|||+++|++||++||+|+.+. +. |..+...+..+..++-|.+.+..++...+.
T Consensus 166 ~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vr-----Y~~SQPWPfP~SLMigf~aey~sgeI~~d~------- 233 (279)
T COG2816 166 FPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVR-----YVGSQPWPFPHSLMLGFMAEYDSGEITPDE------- 233 (279)
T ss_pred CCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeee-----EEeccCCCCchhhhhhheeeeccccccCCc-------
Confidence 56899999999999999999999999999999998 42 333333344567788888888888766554
Q ss_pred CCCccceeeEeeeCcccccccC
Q psy7748 161 DYGVEVLGTVRVPLYTMGDGFR 182 (232)
Q Consensus 161 ~~~~E~~~~~wvpl~el~~~i~ 182 (232)
.|..++.||+.+++..++.
T Consensus 234 ---~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 234 ---GELEDARWFSRDEVLPALP 252 (279)
T ss_pred ---chhhhccccCHhHHhhhcC
Confidence 6999999999999555543
No 79
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.46 E-value=1.5e-12 Score=103.07 Aligned_cols=42 Identities=33% Similarity=0.433 Sum_probs=36.4
Q ss_pred cEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCC
Q psy7748 74 ANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNP 115 (232)
Q Consensus 74 ~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 115 (232)
..+|+.+| ..|.|.||||++++||++.+||.||++||||+.+
T Consensus 49 l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 49 LQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred eEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 45666666 5689999999999999999999999999997754
No 80
>PLN02791 Nudix hydrolase homolog
Probab=99.46 E-value=5.7e-13 Score=124.60 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=82.7
Q ss_pred cccCCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeec-ceeecCCCCCHHHHHhHHHHHhhCCCCc-
Q psy7748 45 DKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGF-PGGLVDAGESPLEALNRELNEEINLNPK- 116 (232)
Q Consensus 45 ~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~- 116 (232)
+....+++++.+++++.+. ++||+|+| ++|.|.+ |||+++.||++.+||+||++||+|+.+.
T Consensus 26 H~~Gl~HrAvhVwIfn~~~----------gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~ 95 (770)
T PLN02791 26 HRDGDYHRAVHVWIYSEST----------QELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPK 95 (770)
T ss_pred ccCCCceEEEEEEEEECCC----------CeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCCh
Confidence 3336678889999998632 46899999 5799998 7999999999999999999999999865
Q ss_pred --ceeeece-eeeeeecC--CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCch
Q psy7748 117 --YKVKDSD-LVCIHYSQ--SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLP 185 (232)
Q Consensus 117 --~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~ 185 (232)
+..+... +......+ ..+.+.++|.+......+. + .+.. . ..|+.++.|++++++.+++...+
T Consensus 96 ~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~--~--~~~l-q-~eEV~~v~wvsl~El~~~l~~~~ 163 (770)
T PLN02791 96 DAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPL--E--AFTL-Q-ESEVSAVKYMSIEEYKSALAKED 163 (770)
T ss_pred hheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCc--c--cCCC-C-hhhhheeEEEcHHHHHHHHhcCC
Confidence 2222221 11111111 2345666676653221110 0 0111 1 25999999999999998875533
No 81
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.44 E-value=1.1e-12 Score=108.17 Aligned_cols=114 Identities=16% Similarity=0.046 Sum_probs=70.3
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCC-----------------HHHHH
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGES-----------------PLEAL 103 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs-----------------~~~aa 103 (232)
.-+++++.++|++.+ ++||+|+| +||.|... ||++..||+ ..+||
T Consensus 53 gl~Hra~~v~i~n~~-----------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA 121 (247)
T PLN02552 53 GLLHRAFSVFLFNSK-----------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA 121 (247)
T ss_pred CceEEEEEEEEEcCC-----------CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence 567889999999876 46899999 46789444 344444321 67899
Q ss_pred hHHHHHhhCCCCc-cee--eece----eeeeee-----cC--CcEEEEEEEEEE-eecCcccccccccccccCCCcccee
Q psy7748 104 NRELNEEINLNPK-YKV--KDSD----LVCIHY-----SQ--SKKIILHFYALQ-VEKTDVLEIEKGALTSHDYGVEVLG 168 (232)
Q Consensus 104 ~REl~EEtGl~~~-~~~--~~~~----~~~~~~-----~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~E~~~ 168 (232)
+||++||+|+.+. ..+ +... +..... +. ..+.+.++|... .....+.+.. .|+.+
T Consensus 122 ~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~----------eEV~~ 191 (247)
T PLN02552 122 QRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNP----------DEVAD 191 (247)
T ss_pred HhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCH----------HHhhe
Confidence 9999999999964 211 1111 111110 01 113444444332 2222333332 58999
Q ss_pred eEeeeCcccccccC
Q psy7748 169 TVRVPLYTMGDGFR 182 (232)
Q Consensus 169 ~~wvpl~el~~~i~ 182 (232)
+.|++++++.+++.
T Consensus 192 ~~wvs~~el~~~~~ 205 (247)
T PLN02552 192 VKYVNREELKEMMR 205 (247)
T ss_pred EEEEeHHHHHHHHh
Confidence 99999999999864
No 82
>PRK08999 hypothetical protein; Provisional
Probab=99.38 E-value=3.7e-12 Score=109.41 Aligned_cols=91 Identities=24% Similarity=0.275 Sum_probs=62.9
Q ss_pred cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-cee-eeceeeeeeecCCcEEEEEEEEEEeec
Q psy7748 74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKV-KDSDLVCIHYSQSKKIILHFYALQVEK 146 (232)
Q Consensus 74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (232)
+++|+++|. +|.|+||||+++.||++.+||.||++||||+.+. ... ....+. ........++|.+....
T Consensus 17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~----~~~~~~~i~~y~~~~~~ 92 (312)
T PRK08999 17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHD----YPDKRVRLDVRRVTAWQ 92 (312)
T ss_pred CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEE----cCCCeEEEEEEEEEEec
Confidence 357777772 4799999999999999999999999999999976 332 222222 12234556667665433
Q ss_pred CcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
+.+. +.|..++.|++++++.+.
T Consensus 93 ~~~~------------~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 93 GEPH------------GREGQPLAWVAPDELAVY 114 (312)
T ss_pred Cccc------------CccCCccEEecHHHcccC
Confidence 3211 125567899999998874
No 83
>KOG2839|consensus
Probab=99.26 E-value=2.1e-11 Score=90.62 Aligned_cols=118 Identities=18% Similarity=0.072 Sum_probs=73.3
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEe--eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR--FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL 124 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~ 124 (232)
.+++..++|+++..+... .+||+..- ++..|-+|+|++|++|+..+||.||+.||.|+... ..+...++
T Consensus 6 ~G~r~vagCi~~r~~~~~--------ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~ 77 (145)
T KOG2839|consen 6 AGFRLVAGCICYRSDKEK--------IEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFE 77 (145)
T ss_pred CCcEEEEEeeeeeecCcc--------eEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchh
Confidence 456778888988877542 24555544 34689999999999999999999999999999987 44333333
Q ss_pred eeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
.+.........-.+.|...... .+.. +.+-..+.-+..|+.+++..+.+
T Consensus 78 ~~~~~~~~~~~k~~~~~l~v~e-~le~-------wp~~~~~~r~r~W~~ledA~~~~ 126 (145)
T KOG2839|consen 78 DFLSKKHRTKPKGVMYVLAVTE-ELED-------WPESEHEFREREWLKLEDAIELC 126 (145)
T ss_pred hccChhhcccccceeehhhhhh-hccc-------ChhhhcccceeEEeeHHHHHHHH
Confidence 2222211111112222222211 1110 11112357789999999888765
No 84
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.20 E-value=3.4e-10 Score=85.24 Aligned_cols=43 Identities=47% Similarity=0.641 Sum_probs=36.5
Q ss_pred cEEEEEEe-eCC-eeecceeecCCCCCHHH-HHhHHHHHhhCCCCc
Q psy7748 74 ANVLMQMR-FDG-YIGFPGGLVDAGESPLE-ALNRELNEEINLNPK 116 (232)
Q Consensus 74 ~~vLl~~R-~~g-~w~lPgG~ve~gEs~~~-aa~REl~EEtGl~~~ 116 (232)
..+++.+| ..+ .|.||||++++||++.+ ||+||++||||+.+.
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 35666666 444 99999999999998888 999999999999876
No 85
>KOG3084|consensus
Probab=99.19 E-value=1.6e-12 Score=107.98 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccC
Q psy7748 83 DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHD 161 (232)
Q Consensus 83 ~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (232)
+|.|..++|.+|+|||+++||+||++||||+++. +.+. .+..........++.+.+-..... ....+
T Consensus 212 ~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~----asQPWP~~p~SLMIgc~ala~~~~--------~I~vd 279 (345)
T KOG3084|consen 212 PGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYV----ASQPWPLMPQSLMIGCLALAKLNG--------KISVD 279 (345)
T ss_pred CchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeee----ecCCCCCCchHHHHHHHHHHhhCC--------ccccC
Confidence 4899999999999999999999999999999998 4321 111111011222222222111111 11122
Q ss_pred CCccceeeEeeeCcccccc
Q psy7748 162 YGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 162 ~~~E~~~~~wvpl~el~~~ 180 (232)
.+.|..+++|++-.++.+.
T Consensus 280 ~dlEleDaqwF~r~ev~~a 298 (345)
T KOG3084|consen 280 KDLELEDAQWFDREEVKSA 298 (345)
T ss_pred cchhhhhcccccHHHHHHH
Confidence 2347888999998887764
No 86
>KOG3069|consensus
Probab=99.13 E-value=2.5e-10 Score=91.48 Aligned_cols=97 Identities=25% Similarity=0.243 Sum_probs=60.7
Q ss_pred CcEEEEEEe------eCCeeecceeecCCCC-CHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEe
Q psy7748 73 RANVLMQMR------FDGYIGFPGGLVDAGE-SPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQV 144 (232)
Q Consensus 73 ~~~vLl~~R------~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (232)
+..||+++| ++|...||||+.|+.+ +-..||.||..||+|++.. ..+++..-...........-+..|....
T Consensus 57 ~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~ 136 (246)
T KOG3069|consen 57 ELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDK 136 (246)
T ss_pred ceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEecc
Confidence 357889988 5689999999999987 7889999999999999986 4333332222111111111111111111
Q ss_pred ec-CcccccccccccccCCCccceeeEeeeCccccc
Q psy7748 145 EK-TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD 179 (232)
Q Consensus 145 ~~-~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~ 179 (232)
.. ..+.... +|+..++|+|++++..
T Consensus 137 ~~l~~~~ln~----------gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 137 KILPSLRLNS----------GEVESAFWVPLTDLLL 162 (246)
T ss_pred cccccccCCc----------hheeeeeeeeHHHHhh
Confidence 00 1122222 5899999999998765
No 87
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.92 E-value=2.4e-09 Score=82.07 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=88.0
Q ss_pred ccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc-ce---
Q psy7748 50 GYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK-YK--- 118 (232)
Q Consensus 50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~--- 118 (232)
+++|.+++||+.+ +++|+++| ++|.| .-..||--+||+..+|++|-+.+|.|+++. ..
T Consensus 32 LHrAFS~~lFne~-----------g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~ 100 (185)
T COG1443 32 LHRAFSSFLFNER-----------GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLE 100 (185)
T ss_pred HHhhhheeEECCC-----------CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccc
Confidence 6789999999987 56788888 56777 456788889999999999999999999987 32
Q ss_pred eee-ceeeeeeecC-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHHHHHHHHH
Q psy7748 119 VKD-SDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNA 196 (232)
Q Consensus 119 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~ 196 (232)
++. ..|.....++ ..+.++.++.+.+.. .+.+.. +|+.+++|++++++.+++...+..+...+....
T Consensus 101 il~rf~YrA~~~~~~~E~Eic~V~~~~~~~-~~~~np----------dEV~~~~wv~~e~l~~~~~~~~~~fsPW~~~~~ 169 (185)
T COG1443 101 ILPRFRYRAADPDGIVENEICPVLAARLDS-ALDPNP----------DEVMDYRWVSPEDLKEMVDATPWAFSPWFVIQA 169 (185)
T ss_pred cccceEEeccCCCCcceeeeeeEEEEeecC-CCCCCh----------HHhhheeccCHHHHHHhhcCCceeeChHHHHHh
Confidence 221 1222221111 236666666766654 333332 599999999999999998666555555555433
No 88
>PLN02839 nudix hydrolase
Probab=98.79 E-value=1.3e-08 Score=87.51 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=80.0
Q ss_pred CcEEEEEEe------eCCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc-c----eeeeceeeeeeecCCcEEEEEEE
Q psy7748 73 RANVLMQMR------FDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK-Y----KVKDSDLVCIHYSQSKKIILHFY 140 (232)
Q Consensus 73 ~~~vLl~~R------~~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~----~~~~~~~~~~~~~~~~~~~~~~~ 140 (232)
+..+-+++| ++|+| .+.||++..||++.+|++||+.||.|+... . ......|...........+.++|
T Consensus 217 ~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~Y 296 (372)
T PLN02839 217 QKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCY 296 (372)
T ss_pred CeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEe
Confidence 356888888 56888 778999999999999999999999999854 1 12222222111111223344456
Q ss_pred EEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy7748 141 ALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPE 213 (232)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~~~~l~~~l~~~~~~~~~ 213 (232)
...++.+..+.. .++|+.++..++++++.+.+.... .|-.+.-.-++.-|...|+|.++
T Consensus 297 DLeLP~df~P~~---------qDGEVe~F~Lm~v~EV~~~l~~~~-----~fKpn~aLViiDFLiRhG~Itpe 355 (372)
T PLN02839 297 DLELPQDFVPKN---------QDGEVESFKLIPVAQVANVIRKTS-----FFKANCSLVIIDFLFRHGFIRPE 355 (372)
T ss_pred eeecCCccccCC---------CccceeEEEEecHHHHHHHHHcCC-----CCCcccHHHHHHHHHHcCCCCCC
Confidence 666554322111 136999999999999987652211 13333444455666677777654
No 89
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.77 E-value=1.6e-08 Score=73.49 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=47.2
Q ss_pred cceEEEEEEecCCceEEEEeccCcEEEEEEe--------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748 51 YHASHCMIFAYNDDKIFATYTARANVLMQMR--------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116 (232)
Q Consensus 51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 116 (232)
+.++++++++...++| .||+.+- ..|-|++|.|....||.+..||+||..||+|+.++
T Consensus 3 K~SAGvLlYR~~aG~v--------~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 3 KLSAGVLLYRARAGVV--------DVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred cccceeEEEEecCCCE--------EEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 3567888888766655 3455544 23789999999999999999999999999999987
No 90
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.71 E-value=1.6e-07 Score=68.53 Aligned_cols=87 Identities=22% Similarity=0.307 Sum_probs=59.3
Q ss_pred cEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCcceeeeceeeeeeecCCcEEEEEEEEEEeecCc
Q psy7748 74 ANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTD 148 (232)
Q Consensus 74 ~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (232)
+.+|+++| ++|+|+||+|.++.+++.+++..|++.+|.++... .+....+.+++. +...++|.+....+.
T Consensus 14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~fth~----~~~~~~~~~~~~~~~ 88 (118)
T cd03431 14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLE-PLGTVKHTFTHF----RLTLHVYLARLEGDL 88 (118)
T ss_pred CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCcccc-cceeEEEecCCe----EEEEEEEEEEEeCCC
Confidence 46788888 45899999999999999999999999998764111 112223333332 566777777664321
Q ss_pred ccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 149 VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 149 ~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
.+..+..|++++++...
T Consensus 89 ---------------~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 89 ---------------LAPDEGRWVPLEELDEY 105 (118)
T ss_pred ---------------cCccccEEccHHHHhhC
Confidence 02346789999888874
No 91
>KOG0648|consensus
Probab=98.66 E-value=1.7e-08 Score=84.18 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=72.6
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeee
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKD 121 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~ 121 (232)
..++..+++++++....+ ++++.+ .+|.|-+|+|.|+++|++.++|+||++||||++.. ..++.
T Consensus 112 Ash~vgvg~~V~n~~~eV----------lVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla 181 (295)
T KOG0648|consen 112 ASHRVGVGAFVLNKKKEV----------LVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLA 181 (295)
T ss_pred hhhheeeeeeEecCCcee----------EEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHH
Confidence 445666777777766222 233322 45899999999999999999999999999999766 33222
Q ss_pred ceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 122 SDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
......... ......+|+.|.+.+-.+... .-..|+..+.|+|+.+.....
T Consensus 182 ~r~~H~~~~-~~~ksd~f~~c~L~p~s~~i~--------~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 182 FRRAHNATF-GLIKSDMFFTCELRPRSLDIT--------KCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred HHhhhcchh-hcccccceeEEEeeccccccc--------hhHHHHHHHhcccHHHhhccc
Confidence 111111110 112455777777754222111 112578888999999877654
No 92
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.97 E-value=5.4e-05 Score=55.18 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=52.0
Q ss_pred cCcEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c-eeeeceeeeeeecCCcEEEEEEEEEEe
Q psy7748 72 ARANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y-KVKDSDLVCIHYSQSKKIILHFYALQV 144 (232)
Q Consensus 72 ~~~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (232)
.++.+|+++| ..|.|+||.--++. ++..+++.+.+.+..|+.+. . .+....+.+++ .....++|.+.+
T Consensus 7 ~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH----~~~~~~~~~~~~ 81 (114)
T PF14815_consen 7 SQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSH----RRWTIHVYEVEV 81 (114)
T ss_dssp TTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SS----EEEEEEEEEEEE
T ss_pred eCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccc----eEEEEEEEEEEe
Confidence 3467899999 34899999988874 43456566677778888765 2 23333344433 367778888887
Q ss_pred ecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 145 EKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
...... +..+..|++++++.+.
T Consensus 82 ~~~~~~--------------~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 82 SADPPA--------------EPEEGQWVSLEELDQY 103 (114)
T ss_dssp E-SS------------------TTEEEEEGGGGGGS
T ss_pred cCCCCC--------------CCCCcEEEEHHHHhhC
Confidence 754321 2447899999999873
No 93
>KOG4195|consensus
Probab=97.76 E-value=3e-05 Score=61.81 Aligned_cols=38 Identities=39% Similarity=0.598 Sum_probs=33.3
Q ss_pred cEEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhh
Q psy7748 74 ANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEI 111 (232)
Q Consensus 74 ~~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEt 111 (232)
.+++..+|.. |.|.+|||.+++||.+-.+++||+.||.
T Consensus 139 le~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 139 LEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred eEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 3566677755 8999999999999999999999999996
No 94
>KOG0142|consensus
Probab=97.72 E-value=5e-05 Score=59.81 Aligned_cols=132 Identities=19% Similarity=0.128 Sum_probs=79.0
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecce--------------eecCCC--CCHHHHHhHHHHHhh
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG--------------GLVDAG--ESPLEALNRELNEEI 111 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPg--------------G~ve~g--Es~~~aa~REl~EEt 111 (232)
+-.++|.++++++.. +.+|+|+|..-...||+ |..+.. .....||+|-|+-|.
T Consensus 49 glLHRaFSVFlFns~-----------~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~EL 117 (225)
T KOG0142|consen 49 GLLHRAFSVFLFNSK-----------NELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAEL 117 (225)
T ss_pred hhhhheeeEEEecCc-----------chHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhh
Confidence 456789999999976 56899999554444443 222222 257899999999999
Q ss_pred CCCCc-c-----eeeec-eeeeeeecC-CcEEEEEEEEEEeecC-cccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748 112 NLNPK-Y-----KVKDS-DLVCIHYSQ-SKKIILHFYALQVEKT-DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR 182 (232)
Q Consensus 112 Gl~~~-~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~ 182 (232)
|+... + ..++. .|....... +.|.+. |..-+..+ .+.+. .+|+.++.|++.+++.+++.
T Consensus 118 GIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiD--YiL~~~~~~~~nPn----------pnEv~e~ryvs~eelkel~~ 185 (225)
T KOG0142|consen 118 GIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEID--YILFLVKDVTLNPN----------PNEVSEIRYVSREELKELVA 185 (225)
T ss_pred CCCccccCHHHcccceeeeeecCCCCCcccceee--EEEEEeccCCCCCC----------hhhhhHhheecHHHHHHHHh
Confidence 99875 2 22222 222221111 223332 22222221 12221 25899999999999999976
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q psy7748 183 GLPCFLTHSFIGNAKHQLLA 202 (232)
Q Consensus 183 ~~~~~l~~~~i~~~~~~l~~ 202 (232)
..+.-++.+|--.+...++.
T Consensus 186 ~~~~~~TPWfkli~~~~l~~ 205 (225)
T KOG0142|consen 186 KASAGFTPWFKLISENFLFK 205 (225)
T ss_pred ccccCCChHHHHHHHHHHHH
Confidence 66555555665555555544
No 95
>KOG4432|consensus
Probab=97.64 E-value=0.00041 Score=57.94 Aligned_cols=149 Identities=16% Similarity=0.155 Sum_probs=87.2
Q ss_pred CCccCccccccccCCcccccccCCccceEEEEEEecCCceEEEEeccCcEEEE---EEeeC------------------C
Q psy7748 26 RPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLM---QMRFD------------------G 84 (232)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl---~~R~~------------------g 84 (232)
.|.++..+-+=.-+|-...+.....+.++.+++++.....+..+..-+.-|.. .++.+ |
T Consensus 204 spy~~P~rl~y~qNGi~knWDl~k~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~Paig 283 (405)
T KOG4432|consen 204 SPYYNPKRLIYTQNGITKNWDLAKCHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIG 283 (405)
T ss_pred CCCcCceEEEEEecCcccccchhhCCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccce
Confidence 45554442222235556777777778888899988765544322211111111 01000 1
Q ss_pred -eeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccccccccccc
Q psy7748 85 -YIGFPGGLVDAGESPLEALNRELNEEINLNPK---YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH 160 (232)
Q Consensus 85 -~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (232)
+.+|.+|.|+..-|..+-|.||..||+|++.. +..........+.++..+ ..|.+++....... +....
T Consensus 284 vTlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~Q---Tmfy~eVTdA~rsg----pGgg~ 356 (405)
T KOG4432|consen 284 VTLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQ---TMFYVEVTDARRSG----PGGGE 356 (405)
T ss_pred eeeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCee---EEEEEEeehhhccC----CCCCc
Confidence 67888999998888888899999999999987 344444444333333222 23444444332211 11122
Q ss_pred CCCccceeeEeeeCccccccc
Q psy7748 161 DYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 161 ~~~~E~~~~~wvpl~el~~~i 181 (232)
++.+|.+++..+|+++++.+.
T Consensus 357 ~ee~E~IEvv~lsle~a~~~~ 377 (405)
T KOG4432|consen 357 KEEDEDIEVVRLSLEDAPSLY 377 (405)
T ss_pred ccccceeeEEEechhhhhHHH
Confidence 333599999999999999874
No 96
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.04 E-value=0.012 Score=46.40 Aligned_cols=114 Identities=18% Similarity=0.298 Sum_probs=65.4
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc----ce---ee
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK----YK---VK 120 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~----~~---~~ 120 (232)
.+.|++|.+|++....+. .+||+-+.....+-||||.+.+||+..++.+|.|.+-.|.... +. .+
T Consensus 40 ~GmRrsVe~Vllvh~h~~--------PHvLLLq~~~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l 111 (188)
T PF13869_consen 40 EGMRRSVEGVLLVHEHGH--------PHVLLLQIGNTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECL 111 (188)
T ss_dssp HSSEEEEEEEEEEEETTE--------EEEEEEEETTTEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEE
T ss_pred hCCceEEEEEEEEecCCC--------cEEEEEeccCccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEE
Confidence 567888877776654433 3566655666699999999999999999999999999998742 22 33
Q ss_pred eceeeeeeecC----------CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748 121 DSDLVCIHYSQ----------SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG 180 (232)
Q Consensus 121 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~ 180 (232)
+.++...+... ....+.-.|.+.+.....-.. .....+.-+|+=++-+.
T Consensus 112 ~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~V-----------Pkn~kL~AvPLFeLydN 170 (188)
T PF13869_consen 112 GTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAV-----------PKNMKLVAVPLFELYDN 170 (188)
T ss_dssp EEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEE-----------ETTSEEEEEEHHHHTTT
T ss_pred EEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEec-----------CCCCeEEeecHhhhhcC
Confidence 44443222110 234556666766654322111 13567777888777764
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.47 E-value=0.023 Score=43.47 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=53.6
Q ss_pred EEEEEEee--------CCeeec-ceeecCCCC---CHHHH----HhHHHHHhhCCCCc----ceeeeceeeeeeecCCcE
Q psy7748 75 NVLMQMRF--------DGYIGF-PGGLVDAGE---SPLEA----LNRELNEEINLNPK----YKVKDSDLVCIHYSQSKK 134 (232)
Q Consensus 75 ~vLl~~R~--------~g~w~l-PgG~ve~gE---s~~~a----a~REl~EEtGl~~~----~~~~~~~~~~~~~~~~~~ 134 (232)
.||+-.|- .+.+++ .|||+..++ |..+. +.|||.||.++.-. +..++.........+. -
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgk-V 151 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGK-V 151 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccce-E
Confidence 56777772 246666 699999876 33333 56999999999843 3333332222221111 2
Q ss_pred EEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748 135 IILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD 179 (232)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~ 179 (232)
.+..+|.......+...-+ .+.++..|+.+.++..
T Consensus 152 HiG~lf~~~~k~ndvevKE----------kd~~~~kwik~~ele~ 186 (203)
T COG4112 152 HIGALFLGRGKFNDVEVKE----------KDLFEWKWIKLEELEK 186 (203)
T ss_pred EEEEEEEeeccccceeeee----------cceeeeeeeeHHHHHH
Confidence 2333444444332222212 3678999999988876
No 98
>KOG2937|consensus
Probab=96.14 E-value=0.0036 Score=53.17 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=35.2
Q ss_pred EEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748 75 NVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116 (232)
Q Consensus 75 ~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 116 (232)
.+|+.+.+ ...|.+|-|++..+|+-.+||.||+.||||.+..
T Consensus 96 r~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 96 RCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred hhheeeceecccccccCccccccchhhhcchhcccchhhcCHH
Confidence 34444443 3469999999999999999999999999999987
No 99
>KOG4432|consensus
Probab=95.85 E-value=0.014 Score=49.05 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=41.0
Q ss_pred eeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeec
Q psy7748 85 YIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEK 146 (232)
Q Consensus 85 ~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (232)
+.+|.||.|+..-||.+-|..|+.||+|+.+. ..+....-...+.+ .....++.|.|++..
T Consensus 80 tielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~-~s~sa~~l~y~ei~e 141 (405)
T KOG4432|consen 80 TIELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAH-QSGSAQHLYYAEIDE 141 (405)
T ss_pred eeeeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccc-cCccchheeeeecch
Confidence 57899999999999999999999999999998 33322222222222 222344555665543
No 100
>KOG1689|consensus
Probab=95.32 E-value=0.13 Score=39.72 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=41.0
Q ss_pred CCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCC
Q psy7748 48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINL 113 (232)
Q Consensus 48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl 113 (232)
.+.|+++-.+++..... -.++|+.+-..-++-+|||.+++||+-.+.++|-+-|-.|-
T Consensus 66 ~gmRrsvegvlivheH~--------lPHvLLLQig~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEHN--------LPHVLLLQIGNTFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred hhhhheeeeeEEEeecC--------CCeEEEEeeCCEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence 44566665555443321 13445444445578999999999999999999999999993
No 101
>KOG4313|consensus
Probab=94.96 E-value=0.049 Score=44.62 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=58.3
Q ss_pred cEEEEEEe------eCCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc--cee---eeceee-eeeecCCcEEEEEEE
Q psy7748 74 ANVLMQMR------FDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK--YKV---KDSDLV-CIHYSQSKKIILHFY 140 (232)
Q Consensus 74 ~~vLl~~R------~~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~---~~~~~~-~~~~~~~~~~~~~~~ 140 (232)
.++-+++| ++|+| ...||++-.|-.+.++|+.|..||..++.. ..+ ..+.|. +.....-.....++|
T Consensus 148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVf 227 (306)
T KOG4313|consen 148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVF 227 (306)
T ss_pred eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEE
Confidence 45667777 55777 778999999999999999999999999874 111 111111 111111122444555
Q ss_pred EEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748 141 ALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD 179 (232)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~ 179 (232)
...++..-.+.. .+.|+..+.-+++.+..+
T Consensus 228 DL~l~~d~iP~~---------nDGEV~~F~Lltl~~~v~ 257 (306)
T KOG4313|consen 228 DLELPLDFIPQN---------NDGEVQAFELLTLKDCVE 257 (306)
T ss_pred eccCchhhcCCC---------CCCceeeEeeecHHHHHH
Confidence 555554332222 135777777777655443
No 102
>PRK10880 adenine DNA glycosylase; Provisional
Probab=90.71 E-value=2 Score=37.73 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=22.2
Q ss_pred cEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCC
Q psy7748 74 ANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNP 115 (232)
Q Consensus 74 ~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 115 (232)
+.+++++| +.|.|+||.. +. .+ ..++..|+.|+..
T Consensus 242 ~~~~l~~r~~~gl~~gl~~fP~~--~~----~~-~~~~~~~~~~~~~ 281 (350)
T PRK10880 242 DEVWLEQRPPSGLWGGLFCFPQF--AD----EE-ELRQWLAQRGIAA 281 (350)
T ss_pred CEEEEEECCccChhhccccCCCC--cc----hh-hHHHHHHhcCCch
Confidence 46788888 3489999963 21 11 2355567778753
No 103
>KOG4548|consensus
Probab=88.46 E-value=2.1 Score=35.38 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=57.1
Q ss_pred EEEEEEe-eC--Ceeecceeec-CCCCCHHHHHhHHHHHhhCCCCc-ceeeecee-----eeeeecC---CcEEEEEEEE
Q psy7748 75 NVLMQMR-FD--GYIGFPGGLV-DAGESPLEALNRELNEEINLNPK-YKVKDSDL-----VCIHYSQ---SKKIILHFYA 141 (232)
Q Consensus 75 ~vLl~~R-~~--g~w~lPgG~v-e~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~-----~~~~~~~---~~~~~~~~~~ 141 (232)
.+|+.+| .+ +.|.||-+.. +.++++..+|.|+|+.-.|=... +....... .++.... ......++|.
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k 219 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFK 219 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEee
Confidence 3445444 23 6899999999 99999999999999998887654 22111111 1110000 0123345566
Q ss_pred EEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748 142 LQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF 181 (232)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i 181 (232)
+.+..+...... -.-+..|++-+++.+-+
T Consensus 220 ~~lv~~~~~kn~-----------n~edfvWvTkdel~e~l 248 (263)
T KOG4548|consen 220 ASLVANSNQKNQ-----------NKEDFVWVTKDELGEKL 248 (263)
T ss_pred eeeccccchhcc-----------cccceEEechHHHhhhc
Confidence 655544322211 23358999999998855
No 104
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=73.59 E-value=3.1 Score=24.04 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=11.9
Q ss_pred ecceeecCCCCCHHHHHhHHHHHhh
Q psy7748 87 GFPGGLVDAGESPLEALNRELNEEI 111 (232)
Q Consensus 87 ~lPgG~ve~gEs~~~aa~REl~EEt 111 (232)
..-||..-+|--|...+.||+-||.
T Consensus 12 tClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHH
Confidence 4458888899988899999999995
No 105
>PF14443 DBC1: DBC1
Probab=70.06 E-value=20 Score=26.58 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=25.0
Q ss_pred CCeee--cceeecCCCC-CHHHHHhHHHHHhhCCCCc
Q psy7748 83 DGYIG--FPGGLVDAGE-SPLEALNRELNEEINLNPK 116 (232)
Q Consensus 83 ~g~w~--lPgG~ve~gE-s~~~aa~REl~EEtGl~~~ 116 (232)
+|.|+ |=||-...+- ++..+|+|=+++-||++..
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 35663 3355555543 6899999999999999976
No 106
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=44.94 E-value=34 Score=28.93 Aligned_cols=18 Identities=33% Similarity=0.611 Sum_probs=13.2
Q ss_pred cEEEEEEe-----eCCeeeccee
Q psy7748 74 ANVLMQMR-----FDGYIGFPGG 91 (232)
Q Consensus 74 ~~vLl~~R-----~~g~w~lPgG 91 (232)
+.+|+++| ..|.|+||+.
T Consensus 239 ~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 239 GEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred CeEEEEeCCCCchhhccccCCCC
Confidence 45777777 3589999973
No 107
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=31.03 E-value=27 Score=30.23 Aligned_cols=26 Identities=31% Similarity=0.230 Sum_probs=21.3
Q ss_pred eecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748 91 GLVDAGESPLEALNRELNEEINLNPK 116 (232)
Q Consensus 91 G~ve~gEs~~~aa~REl~EEtGl~~~ 116 (232)
=.|+..+-..+.+.|||+||.++-+.
T Consensus 407 L~V~~~dLsDe~~MrelReeL~IG~i 432 (466)
T PF09505_consen 407 LGVEPMDLSDEYVMRELREELNIGVI 432 (466)
T ss_pred hCCChhhcccHHHHHHHHHhcCccee
Confidence 35677888889999999999998653
No 108
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=29.67 E-value=64 Score=22.12 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=23.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHhc
Q psy7748 180 GFRGLPCFLTHSFIGNAKHQLLAALL-KLKILSPEEINQALNA 221 (232)
Q Consensus 180 ~i~~~~~~l~~~~i~~~~~~l~~~l~-~~~~~~~~~~~~~~~~ 221 (232)
.+.++...+...+++.+++-.-..-. ..++|.++||++|...
T Consensus 41 ~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rr 83 (85)
T cd08048 41 AVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRR 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHH
Confidence 34444444444444444433322222 2799999999999754
No 109
>PRK13910 DNA glycosylase MutY; Provisional
Probab=28.91 E-value=75 Score=27.12 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=12.9
Q ss_pred cEEEEEEe----eCCeeecce
Q psy7748 74 ANVLMQMR----FDGYIGFPG 90 (232)
Q Consensus 74 ~~vLl~~R----~~g~w~lPg 90 (232)
+.+++++| +.|.|+||+
T Consensus 197 ~~~ll~kr~~~l~~gl~~fP~ 217 (289)
T PRK13910 197 NQIALEKIEQKLYLGMHHFPN 217 (289)
T ss_pred CEEEEEECCCchhcccccCCC
Confidence 35777777 458999996
No 110
>KOG2937|consensus
Probab=28.70 E-value=18 Score=31.34 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748 83 DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116 (232)
Q Consensus 83 ~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 116 (232)
+..|.||-|.+..||-+..++.|+..||+|+...
T Consensus 263 ~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 263 PENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred cccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 4579999999999999999999999999999876
No 111
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=23.25 E-value=74 Score=20.82 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=18.6
Q ss_pred cceeecCCCCCHHHHHhH---HHHHhhCCCC
Q psy7748 88 FPGGLVDAGESPLEALNR---ELNEEINLNP 115 (232)
Q Consensus 88 lPgG~ve~gEs~~~aa~R---El~EEtGl~~ 115 (232)
+|...|..||+++.|+.| .+ +++|+-.
T Consensus 1 M~~v~V~ene~~d~ALrrFKr~~-~k~gil~ 30 (67)
T COG0828 1 MPQVKVRENEPLDKALRRFKRKV-EKEGILR 30 (67)
T ss_pred CCeeeecCCChHHHHHHHHHHHH-HHHHHHH
Confidence 477888899988888753 33 5556643
No 112
>PF14044 NETI: NETI protein
Probab=23.24 E-value=72 Score=20.09 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=17.9
Q ss_pred ecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748 92 LVDAGESPLEALNRELNEEINLNPK 116 (232)
Q Consensus 92 ~ve~gEs~~~aa~REl~EEtGl~~~ 116 (232)
.|+.+||+.+|+.|- .+-||.+.
T Consensus 3 eV~enETI~~CL~RM--~~eGY~Pv 25 (57)
T PF14044_consen 3 EVEENETISDCLARM--KKEGYMPV 25 (57)
T ss_pred eccCCCcHHHHHHHH--HHcCCCce
Confidence 367899999999883 45599765
No 113
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.35 E-value=68 Score=20.31 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=15.0
Q ss_pred CeeecceeecCCCCCHHHHHhHHHHH
Q psy7748 84 GYIGFPGGLVDAGESPLEALNRELNE 109 (232)
Q Consensus 84 g~w~lPgG~ve~gEs~~~aa~REl~E 109 (232)
.-|-+|||.+-.+ |.. |+|..+|
T Consensus 22 ~GWl~Pgg~vi~N--Plk-AqR~AE~ 44 (60)
T PF07026_consen 22 NGWLMPGGKVITN--PLK-AQRLAEE 44 (60)
T ss_pred ceeecCCCeeEcC--HHH-HHHHHHH
Confidence 4599999999865 333 4455543
No 114
>smart00250 PLEC Plectin repeat.
Probab=21.49 E-value=57 Score=18.34 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=15.1
Q ss_pred cceeecCC--CC--CHHHHHhHHHH
Q psy7748 88 FPGGLVDA--GE--SPLEALNRELN 108 (232)
Q Consensus 88 lPgG~ve~--gE--s~~~aa~REl~ 108 (232)
..||.+++ |+ |+.+|..|.+-
T Consensus 9 ~~~Giidp~t~~~lsv~eA~~~gli 33 (38)
T smart00250 9 AIGGIIDPETGQKLSVEEALRRGLI 33 (38)
T ss_pred heeEEEcCCCCCCcCHHHHHHcCCC
Confidence 35677776 44 89999988764
No 115
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=21.11 E-value=1.1e+02 Score=19.00 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHh
Q psy7748 198 HQLLAALLKLKILSPEEINQALN 220 (232)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~~ 220 (232)
..+..++.+.|+|+++++++.+.
T Consensus 26 ~svre~v~~~g~lt~ee~d~ll~ 48 (55)
T PF10415_consen 26 RSVREVVLEEGLLTEEELDELLD 48 (55)
T ss_dssp --HHHHHHHTTSS-HHHHHHHTS
T ss_pred CCHHHHHHHcCCCCHHHHHHHcC
Confidence 45678889999999999998764
Done!