RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7748
(232 letters)
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation,
RNA structural genomics consortium, SGC, RNA
degradation, RNA B protein; 1.70A {Homo sapiens}
Length = 214
Score = 189 bits (480), Expect = 9e-61
Identities = 70/178 (39%), Positives = 102/178 (57%), Gaps = 5/178 (2%)
Query: 52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
H+ H M++A N ++F R +VLMQMRFDG +GFPGG VD LE LNR L
Sbjct: 22 HSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLG 81
Query: 111 INLNPKYKVKDSDLVCIHYSQSK-KIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
+ + ++D + H ++ +++ H YA Q+ + +E A+ S D+G+EVLG
Sbjct: 82 LGCLR---LTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGL 138
Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAKPVPVK 227
VRVPLYT D G P FL+++F+ AK QLL AL L ++ E++ +AL A K
Sbjct: 139 VRVPLYTQKDRVGGFPNFLSNAFVSTAKCQLLFALKVLNMMPEEKLVEALAAATEKQK 196
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold,
hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB:
2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 176 bits (448), Expect = 5e-56
Identities = 73/190 (38%), Positives = 107/190 (56%), Gaps = 4/190 (2%)
Query: 36 ELTQSDLKDDKYKSGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVD 94
++ GY HA H ++ A + K+F R +LM MRFDG +GFPGG VD
Sbjct: 17 RPRNISREESLQLEGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVD 76
Query: 95 AGESPLE-ALNRELNEEINLNPK-YKVKDSDLVCIHYSQS-KKIILHFYALQVEKTDVLE 151
+ LE L REL EE+ +V + D + +K + HFY +++ ++
Sbjct: 77 TRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIER 136
Query: 152 IEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILS 211
IE A+ + D+G+EV+G +RVPLYT+ D GLP FL ++FIGN+K QLL AL LK+L
Sbjct: 137 IEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSLKLLR 196
Query: 212 PEEINQALNA 221
++I + L A
Sbjct: 197 EDQIQEVLKA 206
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
turnover, structural genomic consortium, SGC; HET: IMP;
1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Length = 217
Score = 174 bits (442), Expect = 6e-55
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Query: 51 YHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNE 109
H H +++A + +F R +LMQMRFDG +GFPGG VD + LE LNREL E
Sbjct: 42 RHVCHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELRE 101
Query: 110 EINLN-PKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLG 168
E+ ++V+ +D H +++ HFYA ++ ++L +E GA + D+G+EVLG
Sbjct: 102 ELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLG 161
Query: 169 TVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEIN 216
VRVPLYT+ DG GLP FL +SFIG+A+ QLL AL L +L I+
Sbjct: 162 LVRVPLYTLRDGVGGLPTFLENSFIGSAREQLLEALQDLGLLQSGSIS 209
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 55.9 bits (135), Expect = 3e-10
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEE----INLNPKYKVKDSDLVCIHYSQ 131
+++ +G PGG ++ E+ EA++RE+ EE + + D H
Sbjct: 33 MVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQT 92
Query: 132 SKKIILHFY 140
+ +FY
Sbjct: 93 AYYNPGYFY 101
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT
NEW YORK SGX research center for structural genomics,
nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum}
Length = 144
Score = 55.8 bits (135), Expect = 3e-10
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 76 VLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYS 130
VL+ R G FPGG ++ GE+P AL REL EE+ ++ + H
Sbjct: 22 VLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSY 81
Query: 131 QSKKIILHFY 140
+ +++ Y
Sbjct: 82 DTFHLLMPLY 91
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 55.5 bits (134), Expect = 4e-10
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 76 VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVC----I 127
+L+ R G G PGG VD E A+ RE+ EE+ + ++ + L+C I
Sbjct: 42 ILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGI----ALERATLLCVVDHI 97
Query: 128 HYSQSKKIILHFYA 141
+ + + Y
Sbjct: 98 DAANGEHWVAPVYL 111
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 55.9 bits (135), Expect = 4e-10
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 76 VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI---- 127
VL+ M+ G GG V GE+ + REL EE L V V
Sbjct: 38 VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL----TVDALHKVGQIVFE 93
Query: 128 HYSQSKKIILHFY 140
+ + + +H +
Sbjct: 94 FVGEPELMDVHVF 106
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR
{Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A*
1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Length = 129
Score = 54.5 bits (132), Expect = 7e-10
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 88 FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKII-LHFY 140
FPGG ++ GE+P +A+ REL EE+ + P++ + Y + I L F+
Sbjct: 35 FPGGKIEMGETPEQAVVRELQEEVGITPQHFSL---FEKLEYEFPDRHITLWFW 85
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 54.6 bits (132), Expect = 9e-10
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 76 VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI---- 127
VL++ + + FPGG V+ GE A RE+ EE L ++
Sbjct: 25 VLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL----RLSGVTFCGTCEWF 80
Query: 128 HYSQSKKIILHFY 140
+ + + Y
Sbjct: 81 DDDRQHRKLGLLY 93
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Bacteroides fragilis}
Length = 140
Score = 54.1 bits (131), Expect = 1e-09
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 88 FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS-KKIILHFY 140
FPGG V+ GES EAL RE+ EE++ + K L+ +H++ +I +H +
Sbjct: 38 FPGGKVEEGESLQEALQREIMEEMDYVIEVGEK---LLTVHHTYPDFEITMHAF 88
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 54.2 bits (131), Expect = 1e-09
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 88 FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKII-LHFY 140
FPGG ++ GE+P EAL RELNEE+ + + + +S I + FY
Sbjct: 52 FPGGKIENGETPEEALARELNEELGIEAEVGEL---KLACTHSYGDVGILILFY 102
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 54.3 bits (131), Expect = 1e-09
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 76 VLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI-- 127
L+ R G PGG V+ ES E + RE+ EE + + D+
Sbjct: 22 FLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI----TMVPGDIAGQVN 77
Query: 128 HYSQSKKIILHFY 140
KK+I +
Sbjct: 78 FELTEKKVIAIVF 90
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Length = 140
Score = 53.8 bits (130), Expect = 1e-09
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 88 FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKII-LHFY 140
F GG V+ ES +AL REL EE+ + + S +II LH +
Sbjct: 39 FAGGKVEPDESQRQALVRELREELGIEATVGEY---VASHQREVSGRIIHLHAW 89
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 54.7 bits (132), Expect = 2e-09
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 76 VLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI 127
VL+ + G+ PGG ++AGES LE + RE EE + VK+ +L I
Sbjct: 17 VLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGI----TVKNPELKGI 65
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 76 VLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI--- 127
VL+ R G FPGG V+ GE+P +L REL EE+ ++ V+ +L +
Sbjct: 43 VLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVH----VQADNLFPLTFA 98
Query: 128 -HYSQSKKIILHFY 140
H ++ +++ Y
Sbjct: 99 SHGYETFHLLMPLY 112
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Length = 155
Score = 53.2 bits (128), Expect = 4e-09
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 76 VLMQMRFD-----GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH-- 128
V+MQ R FPGG V+ E+ E++ RE+ EE L +++ LV I
Sbjct: 23 VVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGL----TIQNPQLVGIKNW 78
Query: 129 -YSQSKKIILHFY 140
+ I+ Y
Sbjct: 79 PLDTGGRYIVICY 91
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for
structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 51.1 bits (122), Expect = 2e-08
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 66 IFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDL 124
F A + R D F G + E+ E RE EE+NL+ K+ D
Sbjct: 12 PFIKTEANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDS 71
Query: 125 VC----IHYSQSKKIILHFYALQVEKTDVLEI 152
H+S +K ++ Y ++ T
Sbjct: 72 HASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQ 103
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 50.7 bits (121), Expect = 3e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINL 113
VL+ G PGG + GE +AL RE+ EE L
Sbjct: 29 VLVTASRGGRYNLPGGKANRGELRSQALIREIREETGL 66
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 50.2 bits (120), Expect = 3e-08
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 76 VLMQMRFDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKK 134
+L+ + FP G + E+ ++ RE+ EEI + + D+ I + K
Sbjct: 19 ILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQ--FIERNIQGK 76
Query: 135 IILHFYALQVEKTDVLE 151
F V + +
Sbjct: 77 NYKIFLISGVSEVFNFK 93
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 50.5 bits (121), Expect = 3e-08
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 61 YNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKV 119
D+K+ +L++ + PGG V+ GE+ EA+ RE+ EE L +V
Sbjct: 31 IEDEKV---------LLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGL----EV 77
Query: 120 KDSDLVCIHYSQ---SKKIILHFY 140
K L+ + + S ++ +
Sbjct: 78 KIKKLLYV-CDKPDASPSLLHITF 100
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 50.5 bits (121), Expect = 3e-08
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH---YSQS 132
+L+ G GG + ES +A+ RE+ EE+ + K + L + +
Sbjct: 32 LLVTKD-KGKYYTIGGAIQVNESTEDAVVREVKEELGV----KAQAGQLAFVVENRFEVD 86
Query: 133 KK---IILHFYALQVEKTDVLEIEKG 155
I Y + + + L +++
Sbjct: 87 GVSYHNIEFHYLVDLLEDAPLTMQED 112
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 50.6 bits (121), Expect = 3e-08
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 76 VLMQMRFDGYI------GFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHY 129
L+ D GG V+ GE EAL RE+ EE+ ++ SD+ +
Sbjct: 41 YLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGE----QLILSDITPWTF 96
Query: 130 SQSKKIILHFYALQVEKTDVL 150
+I + Q E +
Sbjct: 97 RDDIRIKTYADGRQEEIYMIY 117
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A*
3l85_A*
Length = 212
Score = 50.9 bits (122), Expect = 4e-08
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 17/124 (13%)
Query: 57 MIFAYNDDKIFATYTARANVLM--QMRF--DGY-IGFPGGLVDAGESPLEALNRELNEEI 111
+ +++ Q R GY I FP GL+D GE+P A REL EE
Sbjct: 65 AVIPVLQRT-----LHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEET 119
Query: 112 NLNPKYKVKDSDL-VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTV 170
+ + S +H + + D E + +
Sbjct: 120 GYKGDIAECSPAVCMDPGLSNCT---IHIVTVTINGDDAENARPKPKPGDG---EFVEVI 173
Query: 171 RVPL 174
+P
Sbjct: 174 SLPK 177
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 49.8 bits (119), Expect = 6e-08
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 76 VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQ 131
VL+ G P G ++ GE+ +EAL RE+ EE L + L+ +
Sbjct: 34 VLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGL----HCEPETLLSVEERG 89
Query: 132 SKKIILHFYA 141
+ F A
Sbjct: 90 PSWVRFVFLA 99
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 48.6 bits (116), Expect = 1e-07
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS 132
+L Q Y P G ++ GE+P EA+ RE+ EE L KV+ + +
Sbjct: 35 ILFQYPGGEYWSLPAGAIELGETPEEAVVREVWEETGL----KVQVKKQKGVFGGKE 87
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 48.8 bits (117), Expect = 2e-07
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 50 GYHASHCMIFAYNDDKIFATYTARANVLM-QMRF--DGYI-GFPGGLVDAGESPLEALNR 105
+ MI DD + +L+ + + Y GF GL+D GES EA NR
Sbjct: 46 PTNREAVMIVPIVDDHL---------ILIREYAVGTESYELGFSKGLIDPGESVYEAANR 96
Query: 106 ELNEEI 111
EL EE+
Sbjct: 97 ELKEEV 102
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 47.2 bits (112), Expect = 5e-07
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 77 LMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116
L++ + G +PGG V+ E+P+EA+ RE EE + +
Sbjct: 16 LVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE 55
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 46.7 bits (111), Expect = 7e-07
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 73 RANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH---Y 129
+ G P G V+ GE+P +A RE EE L +V+ + + +
Sbjct: 32 EKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL----RVRPVKFLGAYLGRF 87
Query: 130 SQSKKIILHFYALQVEKTDVLEIEKG 155
I+ H + + E L
Sbjct: 88 PDGVLILRHVWLAEPEPGQTLAPAFT 113
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 46.1 bits (109), Expect = 1e-06
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 12/88 (13%)
Query: 76 VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHY-- 129
L+ R GY PGG V E+ A R E+ L V H+
Sbjct: 32 FLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD 91
Query: 130 ------SQSKKIILHFYALQVEKTDVLE 151
+ ++ + +V + ++L
Sbjct: 92 DNFSGTDFTTHYVVLGFRFRVSEEELLL 119
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 45.9 bits (109), Expect = 1e-06
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 76 VLMQMRFD---GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHY--- 129
L+ P G ++A E+ +EA REL EE + + + +H
Sbjct: 18 FLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGI----SAQPQHFIRMHQWIA 73
Query: 130 -SQSKKIILHFYALQVEKTDVLEIEKGAL 157
++ + F + +
Sbjct: 74 PDKTPFLRFLFAIELEQICPTQPHDSDID 102
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc;
NMR {Escherichia coli} PDB: 2kdw_A
Length = 164
Score = 46.0 bits (110), Expect = 1e-06
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 88 FP-GGLVDAGESPLEALNRELNEEINLNPK 116
FP GG ++ GES +A+ REL EE+ L+ K
Sbjct: 35 FPQGG-INPGESAEQAMYRELFEEVGLSRK 63
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 46.2 bits (110), Expect = 1e-06
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 31 LNDFIELTQSDLKDDKYKSGYHASHCMIFA---YNDDKIFATYTARANVLMQMRFDGYIG 87
++ + + ++ + + + + ++K+ + ++ + DG
Sbjct: 43 MSHYTKTDWEVVEKLFASETGYQTPKVDIRAVVFQNEKL---------LFVKEKSDGKWA 93
Query: 88 FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH 128
PGG D G +P E +E+ EE +V L+ I
Sbjct: 94 LPGGWADVGYTPTEVAAKEVFEETGY----EVDHFKLLAIF 130
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
d.113.1.1 PDB: 1nqy_A
Length = 194
Score = 46.2 bits (110), Expect = 2e-06
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 84 GYIGFPGGLVDAGESPLE-ALNRELNEEINLNPK 116
G I FPGG +DAGE+P + AL RE EE+ L+P
Sbjct: 64 GQIAFPGGSLDAGETPTQAAL-REAQEEVALDPA 96
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.80A {Aquifex aeolicus}
Length = 139
Score = 45.0 bits (107), Expect = 2e-06
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 87 GFPGGLVDAGESPLEALNRELNEEINLNPKY 117
PGG V+ GE EA RE+ EE L +
Sbjct: 40 ALPGGFVEVGERVEEAAAREMREETGLEVRL 70
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrol structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 45.7 bits (109), Expect = 2e-06
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 71 TARANVLM--QMRF--DGY-IGFPGGLVDAGESPLEALNRELNEEI 111
T R L+ Q R + + P G VD GE+P A REL EE+
Sbjct: 50 TERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEV 95
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 45.8 bits (108), Expect = 3e-06
Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 46 KYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALN 104
+YK+ ++ + + VL++ GFP G +D ES ++
Sbjct: 96 RYKTRIPVRGAIMLDMSMQQC---------VLVKGWKASSGWGFPKGKIDKDESDVDCAI 146
Query: 105 RELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL------EIEK 154
RE+ EE + ++ ++ I + + + + + EI K
Sbjct: 147 REVYEETGFDCSSRINPNE--FIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISK 200
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER
HB8, hydrolase, riken structural genomics/proteomics
initia RSGI; 1.70A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 44.2 bits (105), Expect = 3e-06
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKI 135
VL+ G+ FP G + GES EA RE+ EE + + L Y K +
Sbjct: 16 VLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE---VLLPLYPTRYVNPKGV 72
Query: 136 --ILHFYALQVEKTDVLE 151
+H++ ++ E LE
Sbjct: 73 EREVHWFLMRGEGAPRLE 90
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 45.2 bits (107), Expect = 4e-06
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH 128
+L+ DG PGG D +S + + +E+ EE L V+ +V I
Sbjct: 83 ILLVQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGL----DVEAQRVVAIL 131
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 45.8 bits (108), Expect = 4e-06
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 26/127 (20%)
Query: 17 NLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARAN- 75
N ATE + + + +D K Y ++ + +
Sbjct: 140 NFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIEYKRLW 199
Query: 76 ---------------------VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEE 110
+LM R PGG ++ E+ +A+ REL EE
Sbjct: 200 LKAPFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEE 259
Query: 111 INLNPKY 117
N+N +
Sbjct: 260 TNINLTH 266
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 44.8 bits (106), Expect = 5e-06
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 23/115 (20%)
Query: 56 CMIFAYNDDKIFATYTARANVLMQMR-----------FDGYIGFPGGLVDAGESPLEALN 104
++ + ++L+ R G PGG VD ES +A
Sbjct: 32 MILTTVKELN----GKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAE 87
Query: 105 RELNEEINLNPKY----KVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKG 155
REL EE +L V D II + V + + G
Sbjct: 88 RELEEETSLTDIPLIPFGVFDK----PGRDPRGWIISRAFYAIVPPEALEKRAAG 138
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 43.7 bits (104), Expect = 6e-06
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 84 GYIGFPGGLVDAGESPLEALNRELNEEINLNPK--YKVKDSDLVCIHYSQSKKIILHFYA 141
+ P G VD GE +A RE EE N+ + +D + ++ K + ++
Sbjct: 30 HHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWL 89
Query: 142 LQVEKTDVLEIE 153
++ D +++
Sbjct: 90 AKLNNPDDVQLS 101
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 43.3 bits (103), Expect = 7e-06
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEE 110
VL+ FP G ++ GE P E RE+ EE
Sbjct: 17 VLLIKTPSNVWSFPKGNIEPGEKPEETAVREVWEE 51
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
family, riken structural genomics/proteomics initiative,
RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A
1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Length = 170
Score = 43.7 bits (104), Expect = 8e-06
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 43 KDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLM--QMRF--DGYI-GFPGGLVDAGE 97
+ +Y+ H + A + ++ L QMR P GL++ GE
Sbjct: 24 LEGRYEIVEHKPAVAVIALREGRM----------LFVRQMRPAVGLAPLEIPAGLIEPGE 73
Query: 98 SPLEALNRELNEEI 111
PLEA REL E+
Sbjct: 74 DPLEAARRELAEQT 87
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 43.3 bits (103), Expect = 8e-06
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 14/60 (23%)
Query: 57 MIFAYNDDKIFATYTARANVLM--QMRF--DGYI-GFPGGLVDAGESPLEALNRELNEEI 111
I ++ Q R+ I G V+ GE A REL EE+
Sbjct: 9 FILPVTAQG---------EAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEV 59
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 43.6 bits (103), Expect = 9e-06
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 76 VLMQMRFDGYI--GFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYS-Q 131
L+ DG P G V+ GE LE R EE + + + ++Y +
Sbjct: 31 FLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVAR 90
Query: 132 SKKIILHFYALQVEKTDV 149
+K + ++ +V+ DV
Sbjct: 91 NKPKTVIYWLAEVKDYDV 108
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 44.6 bits (105), Expect = 9e-06
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 56 CMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEI 111
++ YN + + VL+ R F PGG V+ ES +++ RE EE
Sbjct: 44 MVLLCYNKE------ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEET 97
Query: 112 NLNPK 116
+
Sbjct: 98 GVVIS 102
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural
genomics, escherichia coli putative nudix hydrolase,
PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP:
d.113.1.2
Length = 180
Score = 43.5 bits (103), Expect = 1e-05
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 20/82 (24%)
Query: 43 KDDKYKSG-YH-ASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG-------GLV 93
++ H A++ ++ +L+Q R + PG G+V
Sbjct: 27 REQMRAQCLRHRATYIVVH-----------DGMGKILVQRRTETKDFLPGMLDATAGGVV 75
Query: 94 DAGESPLEALNRELNEEINLNP 115
A E LE+ RE EE+ +
Sbjct: 76 QADEQLLESARREAEEELGIAG 97
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Length = 165
Score = 42.9 bits (102), Expect = 1e-05
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 88 FP-GGLVDAGESPLEALNRELNEEINLNP 115
P GG +D GE P A REL EE +
Sbjct: 42 MPQGG-IDEGEDPRNAAIRELREETGVTS 69
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 44.2 bits (104), Expect = 1e-05
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 76 VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH-YS 130
VLM R G I PGG + E+ +E + REL EE L V +V H +
Sbjct: 216 VLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFD 275
Query: 131 QSKK-----IILHFYALQVEKTDVLEIEKG 155
+ I H Y +Q+ ++ ++ G
Sbjct: 276 APGRSLRGRTITHAYFIQLPGGELPAVKGG 305
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 43.1 bits (102), Expect = 1e-05
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 24/108 (22%)
Query: 51 YH-ASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG-------GLVDAGESPLEA 102
+ + N + + R FP G V +GE+ EA
Sbjct: 33 RVRVVNAFLR--NSQG---------QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEA 81
Query: 103 LNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILH-FYALQVEKTDV 149
RE EE+N+ ++ + + L F + ++D
Sbjct: 82 FRREAREELNV----EIDALSWRPLASFSPFQTTLSSFMCVYELRSDA 125
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 42.7 bits (100), Expect = 2e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 76 VLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116
VL+ + + GG ++ E P EA RE EE LN
Sbjct: 19 VLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVT 60
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP:
a.4.5.68 d.113.1.6
Length = 226
Score = 43.1 bits (101), Expect = 2e-05
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 56 CMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEI 111
C+IF +N+ +I ++L+ R G GG V ES +A R L E
Sbjct: 18 CIIFGFNEGEI--------SLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELT 69
Query: 112 NLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLE 151
L Y + I ++++ Y + +
Sbjct: 70 GLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDR 109
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 42.1 bits (99), Expect = 3e-05
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 84 GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH 128
+ P G ++ GES ++A +RE+ EE L I+
Sbjct: 33 IKLNQPAGHLEPGESIIQACSREVLEETGH----SFLPEVLTGIY 73
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 42.0 bits (99), Expect = 4e-05
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 84 GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS 132
G P G ++ E+ ++ RE EE N +V+ +L + S
Sbjct: 65 GKWTLPAGFMENNETLVQGAARETLEEANA----RVEIREL---YAVYS 106
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
pyrophosphohydrolase MUTT dihydroneo triphosphate
pyrophosphohydrolase folate biosynthesis; 1.80A
{Escherichia coli} PDB: 2o5w_A
Length = 150
Score = 41.0 bits (96), Expect = 6e-05
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 75 NVLMQMRFD--GYIGFPGGLVDAGESPLEALNRELNEEINLNP 115
VLM R D + G V+ GE+ +A RE+ EE+ ++
Sbjct: 23 RVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDV 65
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 42.2 bits (98), Expect = 7e-05
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 11/132 (8%)
Query: 52 HASHCMIFAYNDDKIFATYTARAN-------VLMQMRFDGYIGFPGGLVDAGESPLEALN 104
HA+ +I + D + V ++ + G PGG+VD GE L
Sbjct: 111 HAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLK 170
Query: 105 RELNEEINLNPKYKVKDSD----LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH 160
RE EE + + + + +SQ +I Y TD +E A+ H
Sbjct: 171 REFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYH 230
Query: 161 DYGVEVLGTVRV 172
D E++ + +
Sbjct: 231 DETGEIMDNLML 242
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Length = 194
Score = 41.6 bits (97), Expect = 7e-05
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 81 RFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFY 140
R PGG ++ E P A RE+ EE + K LV I +Q +K + Y
Sbjct: 63 RHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV----KGTLGRLVGIFENQERKHRTYVY 118
Query: 141 ALQVEK 146
L V +
Sbjct: 119 VLIVTE 124
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 41.5 bits (97), Expect = 7e-05
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 87 GFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYS 130
FPGGL + E + RE+ EE + K + ++ I
Sbjct: 55 KFPGGLSEPEEDIGDTAVREVFEETGI----KSEFRSVLSIRQQ 94
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH
domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A*
3gz8_A*
Length = 240
Score = 41.2 bits (96), Expect = 1e-04
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 45 DKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVD--AGES 98
+K+ ++F Y+D ++ VL+ R F G G PGG +D ES
Sbjct: 16 KAFKAQLLTVDAVLFTYHDQQL--------KVLLVQRSNHPFLGLWGLPGGFIDETCDES 67
Query: 99 PLEALNRELNEEINLNPKY 117
+ + R+L E+ + P Y
Sbjct: 68 LEQTVLRKLAEKTAVVPPY 86
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 40.0 bits (93), Expect = 2e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 73 RANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLN 114
R LM + GG D + L+ +EL EE +
Sbjct: 57 RNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVK 99
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl,
isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2
PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A*
1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A
2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Length = 190
Score = 39.0 bits (91), Expect = 5e-04
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 21/87 (24%)
Query: 51 YH-ASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG-------GLVDAGESPLEA 102
H A +F A+ +L+ R +PG G GES +A
Sbjct: 31 LHLAFSSWLF-----------NAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDA 79
Query: 103 LNRELNEEINLNPKYKVKDSDLVCIHY 129
+ R E+ + +S Y
Sbjct: 80 VIRRCRYELGVEI--TPPESIYPDFRY 104
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 38.5 bits (90), Expect = 8e-04
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 15/91 (16%)
Query: 88 FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYS----QSKKIILHFYALQ 143
G+++ GES + RE EE VK + V + S++ +
Sbjct: 94 MVAGMIEEGESVEDVARREAIEEAG----LIVKRTKPVLSFLASPGGTSERS--SIMVGE 147
Query: 144 VEKTDVLEIEKGALTSHDYGVEVLGTVRVPL 174
V+ T I L + E + V
Sbjct: 148 VDATTASGI--HGLADEN---EDIRVHVVSR 173
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3
family, structural protein structure initiative, PSI;
HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Length = 300
Score = 38.9 bits (90), Expect = 8e-04
Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 15/84 (17%)
Query: 53 ASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG-------GLVDAGESPLEALNR 105
H + + + + R PG G A S + L +
Sbjct: 120 GVHLNGYVGAGADLH--------LWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIK 171
Query: 106 ELNEEINLNPKYKVKDSDLVCIHY 129
E EE +L + + I Y
Sbjct: 172 ECAEEADLPEALARQAIPVGAITY 195
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 38.3 bits (88), Expect = 0.001
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 88 FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHY---SQSKKIILHFYALQV 144
+P G ++ E+ A RE+ EE K L + Y + KK
Sbjct: 53 WPKGKLEQNETHRHAAVREIGEETGSPVKLGP---YLCEVEYPLSEEGKKTRHSHDCTAD 109
Query: 145 EKT 147
K
Sbjct: 110 TKH 112
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI
ribose, RV1700, hydrolase; HET: APR; 2.00A
{Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A
1mqe_A* 1mqw_A* 1mr2_A*
Length = 207
Score = 36.5 bits (85), Expect = 0.003
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 88 FPGGLVD-AGESPLEALNRELNEE 110
P GL+D AGE P REL EE
Sbjct: 74 LPAGLLDVAGEPPHLTAARELREE 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.032
Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 18/128 (14%)
Query: 121 DSDLVCIHYSQSKKIILHF---YALQVEKTDVLEIEKGALTSHDYGVEVL--GTVRVPLY 175
D + Y K I+ F + + DV ++ K L+ + ++
Sbjct: 8 DFETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTL 65
Query: 176 TMGDGFRGLPCFLTHSFIGNA---KHQLLAALLKLKILSP--------EEINQALNAKPV 224
+ + F+ ++ L + +K + P E+ ++ N V
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 225 PVKVDTSR 232
K + SR
Sbjct: 126 FAKYNVSR 133
Score = 32.5 bits (73), Expect = 0.11
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 40/198 (20%)
Query: 30 NLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDD-KIFATYTARANVLMQMRFDGYIGF 88
L IE + + L+ +Y+ + +F I +L + FD
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDR--LSVF--PPSAHI------PTILLSLIWFDVIKSD 403
Query: 89 PGGLVDAGESPLEALNRELNEEI----NLNPKYKVKDSDLVCIHYSQSKKIILHFYALQV 144
+V+ + ++ E ++ + KVK + +H + I+ H Y +
Sbjct: 404 VMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALH----RSIVDH-YNIP- 456
Query: 145 EKTDVLEIEKGALTSHD-YGVEVLG--TVRVPLYTMGDGFRGLPCFLTHSFIG------- 194
+ + D Y +G + FR + FL F+
Sbjct: 457 ---KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLDFRFLEQKIRHDS 511
Query: 195 ---NAKHQLLAALLKLKI 209
NA +L L +LK
Sbjct: 512 TAWNASGSILNTLQQLKF 529
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 2.70A {Homo sapiens}
Length = 218
Score = 33.0 bits (75), Expect = 0.049
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 15/95 (15%)
Query: 86 IGFPGGLVD-AGESPLEALNRELNEEINLNPKYKVKDSDLVCIH--YS---QSKKIILHF 139
+ GLVD G S E +E EE Y + SDL + +S + F
Sbjct: 97 VELCAGLVDQPGLSLEEVACKEAWEECG----YHLAPSDLRRVATYWSGVGLTGSRQTMF 152
Query: 140 YALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPL 174
Y + G L E++ V +PL
Sbjct: 153 YTEVTDAQRSGPG--GGLVEEG---ELIEVVHLPL 182
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A
{Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Length = 191
Score = 32.6 bits (75), Expect = 0.064
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 88 FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYS 130
GL+D E P + +E EE Y+V + + Y
Sbjct: 83 SCAGLLDNDE-PEVCIRKEAIEETG----YEVGEVRKLFELYM 120
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 32.8 bits (75), Expect = 0.076
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 91 GLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS 132
G V+ GE+ +A+ RE+ EE + KVK+ + SQ
Sbjct: 171 GFVEVGETLEQAVAREVMEESGI----KVKN---LRYVTSQP 205
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5,
RNA processing, cleavage factor, diadenosine
tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo
sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A
3q2t_A 2j8q_A 3p5t_A 3p6y_A
Length = 208
Score = 29.6 bits (66), Expect = 0.74
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEIN 112
VL+ + PGG ++ GE +E L R + E +
Sbjct: 75 VLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 2.2
Identities = 42/243 (17%), Positives = 69/243 (28%), Gaps = 67/243 (27%)
Query: 18 LAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIF-------AYNDDKIFATY 70
+ A + RP + S L G +A IF Y ++
Sbjct: 127 ITARIMAKRPFDKK------SNSALFRAV-GEG-NAQLVAIFGGQGNTDDYFEE------ 172
Query: 71 TARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEE-------INL-----NPKYK 118
++ + Y G L+ L L R + +N+ NP
Sbjct: 173 -------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 119 VKDSDLVCIHYS-------QSKKIILHFYA----LQVEKTDVLEIEKGALTSHDYGVEVL 167
L+ I S Q + H+ L ++ KGA T H G+ V
Sbjct: 226 PDKDYLLSIPISCPLIGVIQ----LAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGL-VT 279
Query: 168 GTVRVPLYTMGDGF-RGLPCFLTHSF-IGNAKHQLLAALLKLKILSPEEINQAL---NAK 222
+ + F + +T F IG ++ L P + +L
Sbjct: 280 AVA-IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT----SLPPSILEDSLENNEGV 334
Query: 223 PVP 225
P P
Sbjct: 335 PSP 337
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc,
dipeptide L-Leu-D-Ala, PSI-2, P structure initiative;
HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Length = 318
Score = 28.0 bits (63), Expect = 2.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 82 FDGYIGFPGGLVDAGESP--LEALNRELNEE 110
FDG GL G+ LE L + +E
Sbjct: 264 FDGIPDHVKGLEHVGKYQSFLETLEKHYTKE 294
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.9
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 197 KHQL--LAALLKLKILSPEEINQ-ALNA 221
K L L A LK+ + + A+ A
Sbjct: 19 KQALKKLQA--SLKLYADDSAPALAIKA 44
>2e58_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5-
methylaminomethyl-2-thiouridine, methyltransferase; HET:
SAM; 2.50A {Aquifex aeolicus}
Length = 308
Score = 27.5 bits (60), Expect = 3.4
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 62 NDDKIFATYTARANVLMQMRFDGYI-----GFPG---GLVDAGESPLEALNRELNEEINL 113
++ + +Y++ +V + G+ G V + ++P+ + ++ L
Sbjct: 217 DEKGYWVSYSSSLSVRKSLLTLGFKVGSSREIGRKRKGTVASLKAPVPPMEENEVRKLVL 276
Query: 114 NPKYK-VKDSDLVCIHYSQSKKIILHFYALQVEK 146
+P ++D L + IL Y L+V K
Sbjct: 277 SPFAVPMRDEKL-----DKEPLEILIDYLLKVYK 305
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix
hydrolase, PSI-2, protein structure initiative; 1.89A
{Thermotoga maritima}
Length = 211
Score = 27.4 bits (60), Expect = 4.0
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 62 NDDKIFATYTARANVLMQMRFDGYIGFPG-----GLVDAGESPLEALNRELNEEINLNPK 116
+ D++ T ++ +G G E+ L+ L RE+NEE++++ +
Sbjct: 77 DGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLR 136
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding,
cell inner MEM cell membrane, kinase, membrane,
nucleotide-binding; 2.50A {Escherichia coli}
Length = 222
Score = 26.4 bits (59), Expect = 7.8
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 192 FIGNAKHQL---LAAL------LKLKILSPEEINQAL 219
F +A H+L L AL +L P+ +AL
Sbjct: 5 FTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,571,111
Number of extensions: 209688
Number of successful extensions: 575
Number of sequences better than 10.0: 1
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 82
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)