RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7748
(232 letters)
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 196
Score = 169 bits (428), Expect = 1e-53
Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 4/178 (2%)
Query: 49 SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRE 106
GY HA H ++ A + K+F R +LM MRFDG +GFPGG VD + LE L RE
Sbjct: 17 EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 76
Query: 107 LNEEINLNPKY-KVKDSDLVCIH-YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGV 164
L EE+ +V + D +K + HFY +++ ++ IE A+ + D+G+
Sbjct: 77 LEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGL 136
Query: 165 EVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAK 222
EV+G +RVPLYT+ D GLP FL ++FIGN+K QLL AL LK+L ++I + L A
Sbjct: 137 EVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSLKLLREDQIQEVLKAS 194
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 51.5 bits (123), Expect = 3e-09
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKI 135
VL+ G+ FP G + GES EA RE+ EE + + + + +
Sbjct: 16 VLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEV-LLPLYPTRYVNPKGVER 74
Query: 136 ILHFYALQVEKTDVLEIE 153
+H++ ++ E LE
Sbjct: 75 EVHWFLMRGEGAPRLEEG 92
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 47.8 bits (113), Expect = 1e-07
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 76 VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQ 131
VL+ M+ G GG V GE+ + REL EE L + + +
Sbjct: 18 VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVD-ALHKVGQIVFEFVG 76
Query: 132 SKKIILHFY 140
+++
Sbjct: 77 EPELMDVHV 85
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 47.9 bits (113), Expect = 2e-07
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 45 DKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPL 100
+Y+ ++ YN + + VL+ R F PGG V+ ES
Sbjct: 31 PEYEKPSLTVDMVLLCYNKE------ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTE 84
Query: 101 EALNRELNEEINLNPKYKVKDSDLVCIHYSQS--KKIILHFYALQVEKTDV 149
+++ RE EE + + + + ++ Y + + +
Sbjct: 85 DSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPL 135
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 45.9 bits (108), Expect = 5e-07
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 73 RANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS 132
+ G P G V+ GE+P +A RE EE L + VK +
Sbjct: 31 EKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRP-VKFLGAYLGRFPDG 89
Query: 133 KKIILHFYALQVEKTDVLEIE 153
I+ H + + E L
Sbjct: 90 VLILRHVWLAEPEPGQTLAPA 110
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 45.6 bits (107), Expect = 5e-07
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 56 CMIFAYNDDKIFATYTARANVLMQMRFDG--YIGFPGGLVDAGESPLEALNRELNEEINL 113
C + + I L+ DG + P G V+ GE LE R EE +
Sbjct: 11 CGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGI 70
Query: 114 NPK--YKVKDSDLVCIHYSQSKKIILHFYALQVE 145
++ + +++K + ++ +V+
Sbjct: 71 EAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVK 104
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 45.6 bits (107), Expect = 6e-07
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKK- 134
+++ +G PGG ++ E+ EA++RE+ EE+ ++ + + YS ++
Sbjct: 32 MVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQT 91
Query: 135 ---IILHFYALQVEKTDVLEIE 153
+FY + +E
Sbjct: 92 AYYNPGYFYVANTWRQLSEPLE 113
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic
domain {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 151
Score = 44.8 bits (105), Expect = 1e-06
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 76 VLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSK 133
++ + GFP G +D ES ++ RE+ EE + ++ I +
Sbjct: 17 CVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN--PNEFIDMTIRG 74
Query: 134 KIILHFYALQVEKTDVLE 151
+ + + + E
Sbjct: 75 QNVRLYIIPGISLDTRFE 92
>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate
phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 43.2 bits (101), Expect = 3e-06
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 45 DKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEAL 103
D YK + C+ F ++ +L+ PGG ++ E P A
Sbjct: 8 DGYK---KRAACLCFRSESEEEV--------LLVSSSRHPDRWIVPGGGMEPEEEPSVAA 56
Query: 104 NRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEK 146
RE+ EE + K LV I +Q +K + Y L V +
Sbjct: 57 VREVCEEAGV----KGTLGRLVGIFENQERKHRTYVYVLIVTE 95
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 43.5 bits (102), Expect = 8e-06
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 76 VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKY----KVKDSDLVCIHYSQ 131
V ++ + G PGG+VD GE L RE EE + + K + + + +SQ
Sbjct: 142 VAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 201
Query: 132 SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRV 172
+I Y TD +E A+ HD E++ + +
Sbjct: 202 DHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLML 242
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 152
Score = 41.4 bits (96), Expect = 1e-05
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 76 VLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPKY 117
VL+ G +PGG V+ E+P+EA+ RE EE + +
Sbjct: 14 VLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 40.9 bits (95), Expect = 2e-05
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 76 VLMQMRFD----GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQ 131
L+ + P G ++ GES ++A +RE+ EE + +V S
Sbjct: 16 YLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASN 75
Query: 132 SKKIILHFYALQVEKTD 148
+ ++ QV D
Sbjct: 76 GTTYLRFTFSGQVVSFD 92
>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus
radiodurans [TaxId: 1299]}
Length = 187
Score = 39.8 bits (92), Expect = 9e-05
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNE 109
Y + ++ + T R++ L + G I FPGG +DAGE+P +A RE E
Sbjct: 29 HYRRAAVLVALTREADPRVLLTVRSSELPTHK--GQIAFPGGSLDAGETPTQAALREAQE 86
Query: 110 EINLNPKYKVKDSDLVCIHYSQSKKIILHFYAL 142
E+ L+P V + ++ +
Sbjct: 87 EVALDP-AAVTLLGELDDVFTPVGFHVTPVLGR 118
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal
domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 147
Score = 36.7 bits (84), Expect = 6e-04
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 56 CMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEI 111
C+IF +N+ +I ++L+ R G GG V ES +A R L E
Sbjct: 15 CIIFGFNEGEI--------SLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELT 66
Query: 112 NLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV 149
L Y + I ++++ Y + +
Sbjct: 67 GLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEY 104
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Narrow-leaved blue lupine (Lupinus
angustifolius) [TaxId: 3871]}
Length = 165
Score = 36.7 bits (84), Expect = 8e-04
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 76 VLMQMRFD--GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSK 133
+ R D P G +D GE P A REL EE + + + + Y
Sbjct: 28 IFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVP-YWLTYDFPP 86
Query: 134 KIILHFY 140
K+
Sbjct: 87 KVREKLN 93
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia
coli [TaxId: 562]}
Length = 131
Score = 34.7 bits (79), Expect = 0.002
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 76 VLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS 132
+L+ +G G V+ GE+ +A+ RE+ EE KVK+ V
Sbjct: 16 ILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESG----IKVKNLRYVTSQPWPF 71
Query: 133 KKIILHFYALQVEKTDV 149
+ ++ + + + D+
Sbjct: 72 PQSLMTAFMAEYDSGDI 88
>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 158
Score = 34.7 bits (79), Expect = 0.004
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 43 KDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEA 102
+ +Y+ H + A + ++ R V + P GL++ GE PLEA
Sbjct: 14 LEGRYEIVEHKPAVAVIALREGRMLFVRQMRPAV-----GLAPLEIPAGLIEPGEDPLEA 68
Query: 103 LNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQ 143
REL E+ L+ S V ++ K + L+
Sbjct: 69 ARRELAEQTGLSGDLTYLFSYFVSPGFTDEKTHVFLAENLK 109
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD
{Escherichia coli [TaxId: 562]}
Length = 160
Score = 34.4 bits (78), Expect = 0.004
Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 4/94 (4%)
Query: 76 VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQ 131
L+ R GY PGG V E+ A R E+ L V H+
Sbjct: 32 FLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD 91
Query: 132 SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVE 165
F V + + L D +
Sbjct: 92 DNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHD 125
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 32.8 bits (74), Expect = 0.020
Identities = 15/65 (23%), Positives = 24/65 (36%)
Query: 52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEI 111
HA+ + F D++ R + G+++ GES + RE EE
Sbjct: 58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEA 117
Query: 112 NLNPK 116
L K
Sbjct: 118 GLIVK 122
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide
dehydrogenase, Sud) {Wolinella succinogenes [TaxId:
844]}
Length = 137
Score = 26.0 bits (56), Expect = 2.9
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 191 SFIGNAKHQLLAALLKLKILSPEEINQALNAKPVPVKVDT 230
F K Q+ AA + +LSP++ + L P +D
Sbjct: 6 KFDATFKAQVKAAKADMVMLSPKDAYKLLQENPDITLIDV 45
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus
aureus [TaxId: 1280]}
Length = 122
Score = 25.5 bits (56), Expect = 3.8
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 188 LTHSFIGNAKHQLLAALLKLKILSPEEINQ 217
+ G L+ K + L+ +EI +
Sbjct: 82 FLNKLYGGDMKSLVLNFAKNEELNNKEIEE 111
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 25.7 bits (55), Expect = 4.6
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 77 LMQMRFDGYIGFPGGLVDAGESPLEALNRELNE-EINLNPKYKVKDSDLVCIHYSQSKKI 135
+ R P + ES + L R L + P+ + L+ H + S+ +
Sbjct: 134 IYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRAL 193
Query: 136 ILHFYALQVEKTDVLEIEKGALTSHDY 162
+ H + E + + G +
Sbjct: 194 LKHLEGISDEDIINITLPTGVPILLEL 220
>d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Archaeon Halothiobacillus
neapolitanus [TaxId: 927]}
Length = 127
Score = 24.3 bits (53), Expect = 9.5
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 114 NPKYKVKDSDLVC 126
P+Y DSD++
Sbjct: 4 MPEYTPLDSDILA 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 865,150
Number of extensions: 39739
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 24
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)