BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7749
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZB|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 151
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 111/150 (74%), Positives = 132/150 (88%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH+ GKGIS SA+PY R+ P W KL+SE V + I K ++KGLTPSQIGV+LRD+HGV
Sbjct: 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
Q R ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61 TQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALV 318
RIHRLARYY+T AVLPPNWKYESATASALV
Sbjct: 121 RIHRLARYYRTVAVLPPNWKYESATASALV 150
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 91/101 (90%)
Query: 35 FCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDK 94
V+LRD+HGV Q R ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDK
Sbjct: 50 IGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDK 109
Query: 95 DSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
D+KFRLIL+ESRIHRLARYY+T AVLPPNWKYESATASA +
Sbjct: 110 DAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALV 150
>pdb|3IZ6|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 151
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 126/151 (83%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH+ GKGIS SA+PY+R+ P+W+K + DV++ I K +KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
V+ V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVES
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYK LPP WKYES TAS LVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 35 FCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDK 94
V+LRD HG+ V+ V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDK
Sbjct: 50 IGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDK 109
Query: 95 DSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
DSKFRLILVESRIHRLARYYK LPP WKYES TAS +
Sbjct: 110 DSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLV 150
>pdb|3ZEY|G Chain G, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 151
Score = 211 bits (538), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/151 (67%), Positives = 123/151 (81%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
M RMH G G + SALPYRR+ P WLK +S DV D + KL+KKGL+PS+IG+ LRDS G+
Sbjct: 1 MVRMHGNGHGKAASALPYRRTPPTWLKSSSRDVIDAVCKLAKKGLSPSRIGMQLRDSMGI 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQV+ V+G KILRI+K G+AP +PEDLYCLIK+A +RKHLER+ KDKD+KFRLILVES
Sbjct: 61 AQVKNVTGRKILRILKHKGMAPEIPEDLYCLIKRATQMRKHLERNTKDKDTKFRLILVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYY+ LPP WKYES+TASA+VA
Sbjct: 121 RIHRLARYYRRVKQLPPTWKYESSTASAMVA 151
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 82/97 (84%)
Query: 39 LRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKF 98
LRDS G+AQV+ V+G KILRI+K G+AP +PEDLYCLIK+A +RKHLER+ KDKD+KF
Sbjct: 54 LRDSMGIAQVKNVTGRKILRILKHKGMAPEIPEDLYCLIKRATQMRKHLERNTKDKDTKF 113
Query: 99 RLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
RLILVESRIHRLARYY+ LPP WKYES+TASA +
Sbjct: 114 RLILVESRIHRLARYYRRVKQLPPTWKYESSTASAMV 150
>pdb|2XZM|O Chain O, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|O Chain O, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 153
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/152 (69%), Positives = 120/152 (78%), Gaps = 2/152 (1%)
Query: 169 MGRMHTPGKG--ISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSH 226
MGRM GKG IS SALP++R P WL +T V D KL+KKGLTPSQIGVILRD H
Sbjct: 1 MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQH 60
Query: 227 GVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILV 286
G+ QVRF++G KILRI+K G AP LPEDLY LIKKA++IRKHLE++RKDKDSK+RLILV
Sbjct: 61 GIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILV 120
Query: 287 ESRIHRLARYYKTKAVLPPNWKYESATASALV 318
ESRIHRL+RYYK LPP WKY + TASALV
Sbjct: 121 ESRIHRLSRYYKLNQKLPPKWKYNAQTASALV 152
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 83/99 (83%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRD HG+ QVRF++G KILRI+K G AP LPEDLY LIKKA++IRKHLE++RKDKDS
Sbjct: 54 VILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDS 113
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
K+RLILVESRIHRL+RYYK LPP WKY + TASA +
Sbjct: 114 KYRLILVESRIHRLSRYYKLNQKLPPKWKYNAQTASALV 152
>pdb|3JYV|O Chain O, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 84
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 80/84 (95%)
Query: 234 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 293
++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ESRIHRL
Sbjct: 1 ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 294 ARYYKTKAVLPPNWKYESATASAL 317
ARYY+T AVLPPNWKYESATASAL
Sbjct: 61 ARYYRTVAVLPPNWKYESATASAL 84
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 79/84 (94%)
Query: 51 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 110
++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ESRIHRL
Sbjct: 1 ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 111 ARYYKTKAVLPPNWKYESATASAF 134
ARYY+T AVLPPNWKYESATASA
Sbjct: 61 ARYYRTVAVLPPNWKYESATASAL 84
>pdb|1YSH|E Chain E, Localization And Dynamic Behavior Of Ribosomal Protein
L30e
Length = 84
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 73/83 (87%)
Query: 51 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 110
V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVESRIHRL
Sbjct: 2 VTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 61
Query: 111 ARYYKTKAVLPPNWKYESATASA 133
ARYYK LPP WKYES TAS
Sbjct: 62 ARYYKRTKKLPPTWKYESTTAST 84
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 73/83 (87%)
Query: 234 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 293
V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVESRIHRL
Sbjct: 2 VTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 61
Query: 294 ARYYKTKAVLPPNWKYESATASA 316
ARYYK LPP WKYES TAS
Sbjct: 62 ARYYKRTKKLPPTWKYESTTAST 84
>pdb|3J20|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 158
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
M RMH +G S S P R + P W++ T E++++ + KL K+G + + IG ILRD +G+
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 229 AQVRFV----SGNK---ILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKF 281
V+ + N+ I RI++ GLAP +PEDL LI++AV +RKHLE+ KD S
Sbjct: 61 PSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMR 120
Query: 282 RLILVESRIHRLARYYKTKAVLPPNWKYESATASALV 318
L L+ES+I RL +YYK K LP NW+Y+ TA LV
Sbjct: 121 GLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLV 157
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 33 VLFCVILRDSHGVAQVRFV----SGNK---ILRIMKAMGLAPNLPEDLYCLIKKAVAIRK 85
+ ILRD +G+ V+ + N+ I RI++ GLAP +PEDL LI++AV +RK
Sbjct: 48 AMIGTILRDQYGIPSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRK 107
Query: 86 HLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
HLE+ KD S L L+ES+I RL +YYK K LP NW+Y+ TA +
Sbjct: 108 HLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLV 157
>pdb|1S1H|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 65
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 62/65 (95%)
Query: 51 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 110
++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ESRIHRL
Sbjct: 1 ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 111 ARYYK 115
ARYY+
Sbjct: 61 ARYYR 65
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 62/65 (95%)
Query: 234 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 293
++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ESRIHRL
Sbjct: 1 ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 294 ARYYK 298
ARYY+
Sbjct: 61 ARYYR 65
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 157 LDDNFYNKKSLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSK 210
D N+++ + + P + P ++P+WLKLTSE + +++S+
Sbjct: 10 FSDERANEQANRCSQCGVP---FCQVHCPVSNNIPDWLKLTSEGRLEEAYEVSQ 60
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 167 LKMGRMHTPGKGISKSALPYRRSVPNWL 194
+K GR TPG + S +PYR SV WL
Sbjct: 350 VKSGRGRTPGP--ANSVVPYRDSVLTWL 375
>pdb|2P6E|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6F|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
Length = 455
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 149 YKIDLVGLLDDNFYNKKSLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKL 208
Y++D GL D HT I+++ALP + KL ED+ D +F+L
Sbjct: 230 YEVDFTGLPDG-------------HTEEDMIAENALPAKTKTAGLRKLKKEDI-DQVFEL 275
Query: 209 SKK 211
K+
Sbjct: 276 FKR 278
>pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
Length = 422
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 149 YKIDLVGLLDDNFYNKKSLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKL 208
Y++D GL D HT I+++ALP + KL ED+ D +F+L
Sbjct: 197 YEVDFTGLPDG-------------HTEEDMIAENALPAKTKTAGLRKLKKEDI-DQVFEL 242
Query: 209 SKK 211
K+
Sbjct: 243 FKR 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,624,690
Number of Sequences: 62578
Number of extensions: 313722
Number of successful extensions: 594
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 20
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)