Query psy7749
Match_columns 319
No_of_seqs 245 out of 471
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 17:48:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_N S27A, YS15, 40S ribosom 100.0 7.3E-82 2.5E-86 545.2 14.0 151 169-319 1-151 (151)
2 2xzm_O RPS13E; ribosome, trans 100.0 1.5E-81 5.1E-86 544.1 13.9 151 169-319 1-153 (153)
3 3j20_Q 30S ribosomal protein S 100.0 3.5E-69 1.2E-73 469.3 12.4 151 169-319 1-158 (158)
4 2xzm_O RPS13E; ribosome, trans 100.0 2.2E-59 7.7E-64 405.6 9.1 125 12-136 21-153 (153)
5 3u5c_N S27A, YS15, 40S ribosom 100.0 5.7E-59 2E-63 402.5 9.5 125 12-136 19-151 (151)
6 3j20_Q 30S ribosomal protein S 100.0 1.1E-46 3.9E-51 328.0 8.4 124 12-135 19-157 (158)
7 3ulw_A 30S ribosomal protein S 97.8 1.3E-05 4.5E-10 64.7 3.2 46 256-301 32-77 (93)
8 4a5u_B 30S ribosomal protein S 97.7 2E-05 6.7E-10 63.1 4.1 45 257-301 29-73 (88)
9 4a5u_B 30S ribosomal protein S 97.7 2.4E-05 8.3E-10 62.5 4.0 46 73-118 28-73 (88)
10 3ulw_A 30S ribosomal protein S 97.7 1.6E-05 5.6E-10 64.1 3.1 45 73-117 32-76 (93)
11 1a32_A Ribosomal protein S15; 97.4 0.00048 1.6E-08 55.0 7.3 63 239-301 7-73 (88)
12 1a32_A Ribosomal protein S15; 97.3 0.00062 2.1E-08 54.4 7.6 63 56-118 7-73 (88)
13 2vqe_O 30S ribosomal protein S 97.2 0.00048 1.6E-08 55.1 5.9 62 240-301 9-74 (89)
14 2vqe_O 30S ribosomal protein S 97.2 0.00062 2.1E-08 54.5 6.4 63 56-118 8-74 (89)
15 3r8n_O 30S ribosomal protein S 97.1 0.0004 1.4E-08 55.5 3.9 46 256-301 28-73 (88)
16 3r8n_O 30S ribosomal protein S 97.0 0.00063 2.1E-08 54.4 4.7 46 73-118 28-73 (88)
17 3bbn_O Ribosomal protein S15; 96.7 0.00036 1.2E-08 56.1 0.8 46 256-301 26-71 (90)
18 3bbn_O Ribosomal protein S15; 96.7 0.00051 1.7E-08 55.2 1.6 47 72-118 25-71 (90)
19 3bzy_B ESCU; auto cleavage pro 68.4 7.2 0.00024 30.3 4.8 59 16-81 16-75 (83)
20 3c01_E Surface presentation of 65.2 13 0.00046 29.7 5.9 67 16-89 16-83 (98)
21 3bzy_B ESCU; auto cleavage pro 64.2 8.5 0.00029 29.9 4.5 59 189-264 16-75 (83)
22 3c01_E Surface presentation of 62.3 18 0.0006 29.1 6.1 68 189-273 16-84 (98)
23 1ynp_A Oxidoreductase, AKR11C1 62.0 8.8 0.0003 34.9 4.9 70 191-263 233-306 (317)
24 3t7y_A YOP proteins translocat 60.8 9.6 0.00033 30.5 4.3 59 16-81 31-90 (97)
25 3t7y_A YOP proteins translocat 60.8 9.5 0.00032 30.6 4.3 60 189-265 31-91 (97)
26 2jlj_A YSCU, YOP proteins tran 60.1 10 0.00036 32.3 4.6 67 16-89 69-136 (144)
27 1jko_C HIN recombinase, DNA-in 57.5 4.9 0.00017 25.6 1.7 46 196-252 6-51 (52)
28 3m66_A Mterf3, mterf domain-co 55.8 5 0.00017 35.3 2.1 32 194-225 33-65 (270)
29 2l8n_A Transcriptional repress 55.6 4.4 0.00015 29.7 1.4 44 206-252 13-57 (67)
30 2vt1_B Surface presentation of 55.5 9.8 0.00033 30.3 3.5 66 189-271 16-82 (93)
31 2vt1_B Surface presentation of 55.2 11 0.00039 29.9 3.8 66 16-88 16-82 (93)
32 3bzs_A ESCU; auto cleavage pro 53.1 15 0.0005 31.2 4.4 60 16-82 70-130 (137)
33 2jlj_A YSCU, YOP proteins tran 53.1 14 0.00049 31.5 4.4 67 189-272 69-136 (144)
34 3r88_A Anthranilate phosphorib 51.2 6.1 0.00021 37.9 1.9 50 173-222 6-65 (377)
35 1pul_A Hypothetical protein C3 49.3 12 0.00042 31.4 3.3 46 189-249 12-57 (125)
36 4dfk_A DNA polymerase I, therm 48.8 12 0.00043 37.3 3.8 36 197-232 174-212 (540)
37 2jli_A YSCU, YOP proteins tran 47.6 19 0.00065 30.0 4.2 57 16-79 60-117 (123)
38 3bzs_A ESCU; auto cleavage pro 47.2 18 0.00063 30.6 4.1 60 189-265 70-130 (137)
39 3b1s_B Flagellar biosynthetic 49.1 5.1 0.00017 31.5 0.0 60 16-82 16-76 (87)
40 2dmp_A Zinc fingers and homeob 41.4 41 0.0014 25.5 4.9 50 178-227 1-51 (89)
41 2jli_A YSCU, YOP proteins tran 41.3 24 0.00083 29.3 3.9 58 189-263 60-118 (123)
42 2d8c_A Phosphatidylcholine:cer 40.5 46 0.0016 26.2 5.2 73 178-267 1-81 (97)
43 4fp9_B Mterf domain-containing 40.4 28 0.00096 32.8 4.6 61 197-263 42-102 (335)
44 1u78_A TC3 transposase, transp 40.3 32 0.0011 26.2 4.2 45 195-248 60-105 (141)
45 3cl6_A PUUE allantoinase; URIC 39.3 21 0.00073 32.1 3.5 108 101-225 139-261 (308)
46 3hot_A Transposable element ma 37.9 20 0.00068 31.7 3.0 37 193-229 3-39 (345)
47 3b0z_B Flagellar biosynthetic 44.0 6.9 0.00023 32.3 0.0 66 16-88 16-82 (114)
48 2kkp_A Phage integrase; SAM-li 36.3 24 0.00084 25.4 2.8 30 193-222 50-79 (117)
49 2kd1_A DNA integration/recombi 35.2 21 0.00073 26.0 2.4 30 194-223 49-78 (118)
50 1uxc_A FRUR (1-57), fructose r 35.0 18 0.00062 26.2 1.9 42 211-252 10-51 (65)
51 2kfn_A Klenow fragment of DNA 34.6 34 0.0012 34.2 4.4 47 198-244 240-295 (605)
52 1tdp_A Carnobacteriocin B2 imm 34.0 25 0.00086 29.2 2.8 52 254-305 6-71 (111)
53 2key_A Putative phage integras 33.8 33 0.0011 24.7 3.2 51 193-254 49-100 (112)
54 2i4r_A V-type ATP synthase sub 33.1 12 0.0004 29.9 0.6 28 195-226 35-62 (102)
55 3nrw_A Phage integrase/site-sp 32.9 30 0.001 25.9 2.9 53 192-255 50-102 (117)
56 3gdw_A Sigma-54 interaction do 32.6 78 0.0027 26.0 5.6 74 195-270 41-129 (139)
57 4dyq_A Gene 1 protein; GP1, oc 29.3 76 0.0026 25.6 5.0 57 195-268 12-68 (140)
58 3eau_A Voltage-gated potassium 28.7 43 0.0015 30.0 3.7 62 201-264 254-321 (327)
59 2cob_A LCOR protein; MLR2, KIA 28.4 58 0.002 25.0 3.8 39 191-233 6-47 (70)
60 3n2t_A Putative oxidoreductase 27.8 74 0.0025 29.1 5.1 63 201-265 265-330 (348)
61 1vpq_A Hypothetical protein TM 27.7 1.2E+02 0.0042 27.5 6.6 16 119-134 126-141 (273)
62 3pv8_A DNA polymerase I; DNA p 27.6 48 0.0016 33.5 4.1 61 197-257 226-291 (592)
63 1tc3_C Protein (TC3 transposas 26.9 36 0.0012 20.8 2.1 26 196-222 6-31 (51)
64 1tdp_A Carnobacteriocin B2 imm 26.6 36 0.0012 28.3 2.5 53 71-123 6-72 (111)
65 1pdn_C Protein (PRD paired); p 25.5 52 0.0018 24.2 3.0 50 196-247 76-128 (128)
66 2zze_A Alanyl-tRNA synthetase; 24.8 52 0.0018 34.7 3.9 52 205-262 438-491 (752)
67 3neh_A Renal dipeptidase famil 24.4 21 0.00071 33.7 0.8 45 189-248 269-313 (318)
68 3v0s_A Perakine reductase; AKR 24.4 49 0.0017 30.1 3.2 62 201-264 244-309 (337)
69 3plo_X DNA-invertase; resolvas 24.3 16 0.00055 30.6 0.0 101 102-223 58-169 (193)
70 2ka4_B P113, signal transducer 23.4 18 0.00062 26.9 0.2 11 66-76 7-17 (57)
71 3fia_A Intersectin-1; EH 1 dom 23.1 2.5E+02 0.0087 22.7 7.0 75 169-263 1-75 (121)
72 1zbm_A Hypothetical protein AF 22.8 15 0.00053 31.1 -0.4 67 192-259 209-280 (280)
73 2vz4_A Tipal, HTH-type transcr 21.9 76 0.0026 24.4 3.5 33 192-224 36-70 (108)
74 3lfu_A DNA helicase II; SF1 he 21.5 51 0.0017 31.7 2.9 26 200-225 332-357 (647)
75 3n6q_A YGHZ aldo-keto reductas 21.4 1.6E+02 0.0056 26.6 6.1 64 200-264 265-332 (346)
76 2hue_C Histone H4; mini beta s 20.8 91 0.0031 23.6 3.6 37 38-81 3-40 (84)
77 3g2b_A Coenzyme PQQ synthesis 20.8 44 0.0015 26.1 1.9 48 196-248 39-92 (95)
78 2xvc_A ESCRT-III, SSO0910; cel 20.7 56 0.0019 24.5 2.3 20 194-213 35-54 (59)
79 1lqa_A TAS protein; TIM barrel 20.7 1.2E+02 0.0041 27.2 5.0 63 200-264 272-338 (346)
80 3eus_A DNA-binding protein; st 20.4 84 0.0029 22.6 3.3 31 212-248 38-68 (86)
81 2gsv_A Hypothetical protein YV 20.3 48 0.0016 25.9 1.9 25 81-116 12-36 (80)
82 1r6x_A ATP:sulfate adenylyltra 20.2 60 0.002 31.6 3.1 45 98-147 351-395 (395)
No 1
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=100.00 E-value=7.3e-82 Score=545.22 Aligned_cols=151 Identities=74% Similarity=1.202 Sum_probs=149.4
Q ss_pred hhccCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCC
Q psy7749 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGL 248 (319)
Q Consensus 169 MaRMhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGl 248 (319)
|||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|||+||++||++||+
T Consensus 1 M~Rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~gl 80 (151)
T 3u5c_N 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGL 80 (151)
T ss_dssp -CCTTSSCCCCCCCCCCSCCSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTC
T ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhhhhhhhC
Q psy7749 249 APNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA 319 (319)
Q Consensus 249 apeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~tA~~lv~ 319 (319)
+|+|||||||||||||+||||||+|+||+||||+|||||||||||++|||++++||+||+|+|+||++|||
T Consensus 81 apeiPEDL~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~ 151 (151)
T 3u5c_N 81 APEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALVN 151 (151)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 2
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=100.00 E-value=1.5e-81 Score=544.07 Aligned_cols=151 Identities=70% Similarity=1.115 Sum_probs=147.3
Q ss_pred hhccC--CCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHc
Q psy7749 169 MGRMH--TPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAM 246 (319)
Q Consensus 169 MaRMh--s~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~n 246 (319)
||||| ++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|||+||++|||+|
T Consensus 1 M~rmh~~~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~ 80 (153)
T 2xzm_O 1 MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKN 80 (153)
T ss_dssp ---CCSCSSCCCCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHT
T ss_pred CCCCCcCCCCCCccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhhhhhhhC
Q psy7749 247 GLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA 319 (319)
Q Consensus 247 GlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~tA~~lv~ 319 (319)
|++|+|||||||||||||+||||||+|+||+||||+|||||||||||+||||++++||+||+|+|+||++||+
T Consensus 81 glapeiPEDL~~LikKAv~lRkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~ 153 (153)
T 2xzm_O 81 GCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQKLPPKWKYNAQTASALVQ 153 (153)
T ss_dssp TCCCSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCSSHHHHHHHC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.5e-69 Score=469.31 Aligned_cols=151 Identities=45% Similarity=0.761 Sum_probs=149.9
Q ss_pred hhccCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeec-------cchHHH
Q psy7749 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVS-------GNKILR 241 (319)
Q Consensus 169 MaRMhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vt-------GkkI~~ 241 (319)
|||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|| |+||++
T Consensus 1 M~rmh~~~kG~S~S~~P~~~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gip~Vk~vt~~~~~~~G~ki~~ 80 (158)
T 3j20_Q 1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITR 80 (158)
T ss_dssp CCCCSSSSSCCCCCCCCCCSSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCCSCHHHHHCSSSTTSCCCTHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCCCCeeeccccccccCcCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHcCCCCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhhhhhhhC
Q psy7749 242 IMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA 319 (319)
Q Consensus 242 ILk~nGlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~tA~~lv~ 319 (319)
||++||++|+|||||++|++||++|++||+.|+||+||+|+|++++||++||.+||+++.+||++|+|+|+||++||.
T Consensus 81 iLk~~gl~p~iPEDL~~Lt~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~YLk~kd~lp~~w~Y~~~ta~~lv~ 158 (158)
T 3j20_Q 81 ILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLVR 158 (158)
T ss_dssp HHHHHTCSCSSCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCCHHHHHHHHC
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceECHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999973
No 4
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=100.00 E-value=2.2e-59 Score=405.58 Aligned_cols=125 Identities=59% Similarity=0.966 Sum_probs=120.4
Q ss_pred CCCCCCceeecc-----cccccccch---hhhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q psy7749 12 TTLGPNWFIKSG-----FYCNLKTDI---VLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAI 83 (319)
Q Consensus 12 ~~~~p~w~~~s~-----~~~~~~~~~---~~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~l 83 (319)
.+.+|+|++.|+ .+|+++++| +|||++||||||||+||+|||+||++|||+||++|+|||||||||||||+|
T Consensus 21 ~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~l 100 (153)
T 2xzm_O 21 KRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSI 100 (153)
T ss_dssp CCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 467999999988 677888888 699999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHHh
Q psy7749 84 RKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFIL 136 (319)
Q Consensus 84 RkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~ 136 (319)
|||||+|+||+||||+|||||||||||+||||++++||+||+|+|+||++||+
T Consensus 101 RkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~ 153 (153)
T 2xzm_O 101 RKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQKLPPKWKYNAQTASALVQ 153 (153)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCSSHHHHHHHC
T ss_pred HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999985
No 5
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=100.00 E-value=5.7e-59 Score=402.47 Aligned_cols=125 Identities=64% Similarity=1.019 Sum_probs=120.6
Q ss_pred CCCCCCceeecc-----cccccccch---hhhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q psy7749 12 TTLGPNWFIKSG-----FYCNLKTDI---VLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAI 83 (319)
Q Consensus 12 ~~~~p~w~~~s~-----~~~~~~~~~---~~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~l 83 (319)
.+.+|+|++.|+ .+|+++++| +|||++||||||||+||+|||+||++||++||++|+|||||||||||||+|
T Consensus 19 ~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~l 98 (151)
T 3u5c_N 19 SRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSV 98 (151)
T ss_dssp CCSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 467999999988 678888888 699999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHHh
Q psy7749 84 RKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFIL 136 (319)
Q Consensus 84 RkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~ 136 (319)
|||||+|+||+||||+|||||||||||++|||++++||+||+|+|+||++|||
T Consensus 99 rkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~ 151 (151)
T 3u5c_N 99 RKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALVN 151 (151)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCHHHHHHHHC
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999986
No 6
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-46 Score=327.96 Aligned_cols=124 Identities=41% Similarity=0.702 Sum_probs=119.5
Q ss_pred CCCCCCceeecc-----cccccccch---hhhhhhhccccCCCceeeec-------cchHHHHHHHcCCCCCChhhHHHH
Q psy7749 12 TTLGPNWFIKSG-----FYCNLKTDI---VLFCVILRDSHGVAQVRFVS-------GNKILRIMKAMGLAPNLPEDLYCL 76 (319)
Q Consensus 12 ~~~~p~w~~~s~-----~~~~~~~~~---~~IG~iLRD~~GIp~VK~vt-------GkkI~~ILk~nGlapeIPEDL~~L 76 (319)
.+.+|+|++.++ .||++++++ +|||++||||||||+||+|| |+||++||++||++|+|||||++|
T Consensus 19 ~~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gip~Vk~vt~~~~~~~G~ki~~iLk~~gl~p~iPEDL~~L 98 (158)
T 3j20_Q 19 RTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFL 98 (158)
T ss_dssp CSSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCCSCHHHHHCSSSTTSCCCTHHHHHHHTCSCSSCHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCCCCeeeccccccccCcCcHHHHHHHcCCCCCCHHHHHHH
Confidence 468999999988 677777777 69999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHH
Q psy7749 77 IKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135 (319)
Q Consensus 77 ikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv 135 (319)
++||++|++||+.|+||+||+|+|++++||++||.+||+++++||++|+|+|+||++||
T Consensus 99 t~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~YLk~kd~lp~~w~Y~~~ta~~lv 157 (158)
T 3j20_Q 99 IRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLV 157 (158)
T ss_dssp HHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceECHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999997
No 7
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=97.76 E-value=1.3e-05 Score=64.65 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749 256 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 301 (319)
Q Consensus 256 L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~ 301 (319)
..-|-.+..++..|++.|+||.+|+++|..+.++-+||.+|++++.
T Consensus 32 IA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d 77 (93)
T 3ulw_A 32 VALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRKD 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567889999999999999999999999999999999999999863
No 8
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=97.75 E-value=2e-05 Score=63.06 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749 257 YCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 301 (319)
Q Consensus 257 ~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~ 301 (319)
.-|=.+..++..|++.|+||.+|+++|..+.++-+||.+|++++.
T Consensus 29 A~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d 73 (88)
T 4a5u_B 29 ALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999999999999999999999864
No 9
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=97.71 E-value=2.4e-05 Score=62.51 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749 73 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 118 (319)
Q Consensus 73 L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~ 118 (319)
...|-.+..++..|++.|+||++|+++|..+.++-+||.+|++++.
T Consensus 28 iA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d 73 (88)
T 4a5u_B 28 VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 3566779999999999999999999999999999999999999963
No 10
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=97.71 E-value=1.6e-05 Score=64.06 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhc
Q psy7749 73 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTK 117 (319)
Q Consensus 73 L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~ 117 (319)
..-|-.+..++..|++.|+||.+|+++|..+.++-+||.+|++++
T Consensus 32 IA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~ 76 (93)
T 3ulw_A 32 VALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRK 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHc
Confidence 466788999999999999999999999999999999999999996
No 11
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=97.37 E-value=0.00048 Score=55.01 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=51.9
Q ss_pred HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749 239 ILRIMKAMGLAP---NLPED-LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 301 (319)
Q Consensus 239 I~~ILk~nGlap---eIPED-L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~ 301 (319)
-.+|.++.+..+ -=||- ..-|-.+..++..|++.|+||.||+++|...-++-+||.+|.+++.
T Consensus 7 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 1a32_A 7 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKD 73 (88)
T ss_dssp HHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 345566655544 45665 5667789999999999999999999999999999999999999864
No 12
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=97.34 E-value=0.00062 Score=54.35 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=52.5
Q ss_pred HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749 56 ILRIMKAMGLAP---NLPED-LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 118 (319)
Q Consensus 56 I~~ILk~nGlap---eIPED-L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~ 118 (319)
-.+|.++.+..+ -=||- ..-|-.+..++..|++.|+||.+|+++|..+-++-+||.+|.+++.
T Consensus 7 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 1a32_A 7 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKD 73 (88)
T ss_dssp HHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 345666666554 45665 5677789999999999999999999999999999999999999864
No 13
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=97.24 E-value=0.00048 Score=55.12 Aligned_cols=62 Identities=21% Similarity=0.354 Sum_probs=51.0
Q ss_pred HHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749 240 LRIMKAMGLAP---NLPED-LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 301 (319)
Q Consensus 240 ~~ILk~nGlap---eIPED-L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~ 301 (319)
.+|.++.+-.+ -=||- ..-|-.+..++..|++.|+||.||+++|...-++-+||.+|.+++.
T Consensus 9 ~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d 74 (89)
T 2vqe_O 9 QKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRED 74 (89)
T ss_dssp HHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 45555555444 44555 5667789999999999999999999999999999999999999864
No 14
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=97.22 E-value=0.00062 Score=54.46 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=52.2
Q ss_pred HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749 56 ILRIMKAMGLAP---NLPED-LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 118 (319)
Q Consensus 56 I~~ILk~nGlap---eIPED-L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~ 118 (319)
-.+|.++.+-.+ -=||- ..-|-.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 8 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d 74 (89)
T 2vqe_O 8 KQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRED 74 (89)
T ss_dssp HHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 345666666544 45665 5677789999999999999999999999999999999999999864
No 15
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=97.06 E-value=0.0004 Score=55.50 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749 256 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 301 (319)
Q Consensus 256 L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~ 301 (319)
...|=.+..++..|++.|+||.||+++|...-++-+||.+|.+++.
T Consensus 28 iA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 3r8n_O 28 VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHcC
Confidence 3556778999999999999999999999999999999999999863
No 16
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=97.03 E-value=0.00063 Score=54.37 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749 73 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 118 (319)
Q Consensus 73 L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~ 118 (319)
...|-.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 28 iA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 3r8n_O 28 VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHcC
Confidence 4566779999999999999999999999999999999999999863
No 17
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=96.70 E-value=0.00036 Score=56.12 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749 256 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 301 (319)
Q Consensus 256 L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~ 301 (319)
..-|=.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 26 IA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd 71 (90)
T 3bbn_O 26 VFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKIN 71 (90)
T ss_dssp HHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566788889999999999999999999999999999999999864
No 18
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=96.69 E-value=0.00051 Score=55.23 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749 72 DLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA 118 (319)
Q Consensus 72 DL~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~ 118 (319)
-..-|-.+..+|..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 25 QIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd 71 (90)
T 3bbn_O 25 QVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKIN 71 (90)
T ss_dssp HHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566778899999999999999999999999999999999999864
No 19
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=68.35 E-value=7.2 Score=30.33 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=44.4
Q ss_pred CCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHH
Q psy7749 16 PNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAV 81 (319)
Q Consensus 16 p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LikKAv 81 (319)
+.+++..+..++++..|..++. +||||-+.. ..+.|.|- .-.+..+||++||.-+-...
T Consensus 16 ~aP~VvAKG~~~~A~~I~~~A~----e~~VPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeil 75 (83)
T 3bzy_B 16 PLPLVIETGKDAKALQIIKLAE----LYDIPVIED---IPLARSLDKNIHKGQYITEDFFEPVAQLI 75 (83)
T ss_dssp SSCEEEEEEETHHHHHHHHHHH----HTTCCEEEC---HHHHHHHHHHCCTTCBCCGGGHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHH----HcCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 4556655545777777766664 799999886 56888888 78999999999997765543
No 20
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=65.15 E-value=13 Score=29.73 Aligned_cols=67 Identities=10% Similarity=-0.040 Sum_probs=49.9
Q ss_pred CCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHHHHHHHhh
Q psy7749 16 PNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVAIRKHLER 89 (319)
Q Consensus 16 p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LikKAv~lRkHLe~ 89 (319)
+.+++..+....++..|..|+. +||||-+.. ..+.|.|- .-.+..+||++||.-+-.....--.|+.
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~----e~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v~~l~~ 83 (98)
T 3c01_E 16 PIPMISVYETNQRALAVRAYAE----KVGVPVIVD---IKLARSLFKTHRRYDLVSLEEIDEVLRLLVWLEEVEN 83 (98)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHH----HHTCCEEEC---HHHHHHHHHHCCTTCBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHH----HcCCCeecC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhc
Confidence 4556655545777777766664 799999886 56888887 7889999999999888777665555543
No 21
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=64.20 E-value=8.5 Score=29.89 Aligned_cols=59 Identities=12% Similarity=0.204 Sum_probs=46.8
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHH
Q psy7749 189 SVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAV 264 (319)
Q Consensus 189 ~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv 264 (319)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.|.|- .-.+..+||++||.-+-...
T Consensus 16 ~aP~VvAKG~~~~A~~I~~~A~e--------------~~VPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeil 75 (83)
T 3bzy_B 16 PLPLVIETGKDAKALQIIKLAEL--------------YDIPVIED---IPLARSLDKNIHKGQYITEDFFEPVAQLI 75 (83)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------TTCCEEEC---HHHHHHHHHHCCTTCBCCGGGHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 45666666778899999998874 79999886 45888888 78899999999997765544
No 22
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=62.34 E-value=18 Score=29.05 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=53.4
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q psy7749 189 SVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVAIR 267 (319)
Q Consensus 189 ~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~iR 267 (319)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.|.|- .-.+..+||++||.-|-..+..=
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 78 (98)
T 3c01_E 16 PIPMISVYETNQRALAVRAYAEK--------------VGVPVIVD---IKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 78 (98)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCTTCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCeecC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Confidence 45666666788999999998874 79999886 45888887 78899999999998888777765
Q ss_pred HHHhhh
Q psy7749 268 KHLERS 273 (319)
Q Consensus 268 KHLe~n 273 (319)
-.|+..
T Consensus 79 ~~l~~~ 84 (98)
T 3c01_E 79 EEVENA 84 (98)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 555543
No 23
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=61.98 E-value=8.8 Score=34.88 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=46.9
Q ss_pred CCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccch----HHHHHHHcCCCCCChhhHHHHHHHH
Q psy7749 191 PNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNK----ILRIMKAMGLAPNLPEDLYCLIKKA 263 (319)
Q Consensus 191 P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkk----I~~ILk~nGlapeIPEDL~~LIkKA 263 (319)
+.|+.....++.+.+.++|+ |.||+|+-..--=++|-. +-.|.|.+ |.+-++.-+. .+++++.+.-|..+
T Consensus 233 ~~~~~~~~~~~~~~l~~ia~-g~s~aqvaL~w~l~~~~v-~~vI~g~~~~~~l~en~~a~~~-~~Ls~ee~~~l~~~ 306 (317)
T 1ynp_A 233 EGYLNYRYDELKLLRESLPT-DRPLHELALQYCLAHDVV-ATVAAGASSIDQVKANVQAVEA-TPLTAEERQHIQKL 306 (317)
T ss_dssp CCBTTBCHHHHHHHHHHSCS-SSCHHHHHHHHHHTSTTE-EEEECCCSSHHHHHHHHHHHTS-CCCCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHc-CCCHHHHHHHHHHhCCCC-eEEEeCCCCHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 56777778888899999999 999999987655555411 12345544 3333333221 67888888777665
No 24
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=60.84 E-value=9.6 Score=30.54 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=43.1
Q ss_pred CCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHH
Q psy7749 16 PNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAV 81 (319)
Q Consensus 16 p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LikKAv 81 (319)
+.+.+..+...+++..|..+. .+||||-+.. ..+.|.|- .-.+..+||++||.-+-...
T Consensus 31 ~aP~VvAKG~~~~A~~I~~~A----~e~gVPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeiL 90 (97)
T 3t7y_A 31 KAPWIIAMGVNLRAKRIIAEA----EKYGVPIMRN---VPLAHQLLDEGKELKFIPETTYEAVGEIL 90 (97)
T ss_dssp SSCEEEEEEEHHHHHHHHHHH----HHHTCCEEEC---HHHHHHHHHHCCBTSBCCHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHH----HHcCCeEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHH
Confidence 455555444467777766655 3799999886 56888887 78999999999997765544
No 25
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=60.81 E-value=9.5 Score=30.57 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=48.2
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q psy7749 189 SVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVA 265 (319)
Q Consensus 189 ~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~ 265 (319)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.|.|- .-.+..+||++||.-+-....
T Consensus 31 ~aP~VvAKG~~~~A~~I~~~A~e--------------~gVPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeiLa 91 (97)
T 3t7y_A 31 KAPWIIAMGVNLRAKRIIAEAEK--------------YGVPIMRN---VPLAHQLLDEGKELKFIPETTYEAVGEILL 91 (97)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCBTSBCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCeEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHHH
Confidence 45777777788999999999874 89999886 45888887 778999999999977665443
No 26
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=60.09 E-value=10 Score=32.35 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=48.6
Q ss_pred CCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHHHHHHHhh
Q psy7749 16 PNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVAIRKHLER 89 (319)
Q Consensus 16 p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LikKAv~lRkHLe~ 89 (319)
+.+++..+....++..|..|+. +||||-+.. ..+.+.|- .-.+..+||++||.-+-..+..--.++.
T Consensus 69 ~AP~VvAKG~g~~A~~I~e~A~----e~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v~~l~~ 136 (144)
T 2jlj_A 69 PLPLVTFKYTDAQVQTVRKIAE----EEGVPILQR---IPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 136 (144)
T ss_dssp SSCEEEEEEETHHHHHHHHHHH----HHTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHHHHHHHHHC--
T ss_pred CCCEEEEEeCCHHHHHHHHHHH----HcCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhh
Confidence 4556655545777777766654 799999886 45888887 7899999999999888777665544443
No 27
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=57.54 E-value=4.9 Score=25.56 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=29.2
Q ss_pred CChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCC
Q psy7749 196 LTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNL 252 (319)
Q Consensus 196 ~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeI 252 (319)
+++++. +.|+.|...|.|.++|...| || .-..|.++|++.|+.|.+
T Consensus 6 ~~~~~~-~~i~~l~~~g~s~~~ia~~l----gv------s~~Tv~r~l~~~~~~~~~ 51 (52)
T 1jko_C 6 INKHEQ-EQISRLLEKGHPRQQLAIIF----GI------GVSTLYRYFPASSIKKRM 51 (52)
T ss_dssp SCTTHH-HHHHHHHHTTCCHHHHHHTT----SC------CHHHHHHHSCTTC-----
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHH----CC------CHHHHHHHHHHccccccc
Confidence 355554 57778888999999988654 54 344577888888876643
No 28
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=55.76 E-value=5 Score=35.34 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=19.0
Q ss_pred ccCChh-HHHHHHHHHhhCCCCccchhhhhhcc
Q psy7749 194 LKLTSE-DVKDHIFKLSKKGLTPSQIGVILRDS 225 (319)
Q Consensus 194 l~~s~e-EVe~~IvkLaKkG~tpSqIG~iLRD~ 225 (319)
+..+.+ .+...+.-|..-|+++++||.++.-.
T Consensus 33 L~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~ 65 (270)
T 3m66_A 33 LRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKN 65 (270)
T ss_dssp HTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHC
T ss_pred hccChhhhHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 556653 55666666666666666666665443
No 29
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=55.63 E-value=4.4 Score=29.75 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=34.7
Q ss_pred HHHhh-CCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCC
Q psy7749 206 FKLSK-KGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNL 252 (319)
Q Consensus 206 vkLaK-kG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeI 252 (319)
.++|+ -|+++|-|..+|.+. |.|..-|-.+|.++.++-|..|..
T Consensus 13 ~diA~~aGVS~sTVSr~ln~~---~~vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 13 KDVALKAKVSTATVSRALMNP---DKVSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHHHHTTCCHHHHHHTTTCC---CCSCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCccH
Confidence 34444 399999999999876 457788999999999999998753
No 30
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=55.52 E-value=9.8 Score=30.33 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=51.2
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q psy7749 189 SVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVAIR 267 (319)
Q Consensus 189 ~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~iR 267 (319)
.+|-=+-.-.+++-+.|.++|++ +|||-+.. ..+.|.|- .-.+..+||++||.-|-..+..=
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 78 (93)
T 2vt1_B 16 PAPFISLIETNQCALAVRKYANE--------------VGIPTVRD---VKLARKLYKTHTKYSFVDFEHLDEVLRLIVWL 78 (93)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------TTCCEEEC---HHHHHHHHHHCCSSEECCTTTHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHHHHH
Confidence 45666666788999999999874 79998886 45888887 77899999999998887776654
Q ss_pred HHHh
Q psy7749 268 KHLE 271 (319)
Q Consensus 268 KHLe 271 (319)
.-|+
T Consensus 79 ~~l~ 82 (93)
T 2vt1_B 79 EQVE 82 (93)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 4443
No 31
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=55.23 E-value=11 Score=29.94 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=48.5
Q ss_pred CCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHHHHHHHh
Q psy7749 16 PNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVAIRKHLE 88 (319)
Q Consensus 16 p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LikKAv~lRkHLe 88 (319)
+.+++..+..++++..|..|+. ++|||-+.. ..+.|.|- .-.+..+||++||.-+-.....-.-++
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~----e~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v~~l~ 82 (93)
T 2vt1_B 16 PAPFISLIETNQCALAVRKYAN----EVGIPTVRD---VKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQVE 82 (93)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHH----HTTCCEEEC---HHHHHHHHHHCCSSEECCTTTHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEeCcHHHHHHHHHHH----HcCCCEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHHHh
Confidence 5556665555777777776664 799999886 56888887 788999999999988877665544443
No 32
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=53.12 E-value=15 Score=31.18 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=44.7
Q ss_pred CCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q psy7749 16 PNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVA 82 (319)
Q Consensus 16 p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LikKAv~ 82 (319)
+.+++..+....++..|..|+. +||||-+.. ..+.+.|- .-.+..+||++||.-+-..+.
T Consensus 70 ~AP~VvAKG~g~~A~~I~e~A~----e~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa 130 (137)
T 3bzs_A 70 PLPLVIETGKDAKALQIIKLAE----LYDIPVIED---IPLARSLYKNIHKGQYITEDFFEPVAQLIR 130 (137)
T ss_dssp SSCEEEEEEETHHHHHHHHHHH----HHTCCEEEC---HHHHHHHHHHSCTTCBCCGGGHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHH----HcCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Confidence 4556655545777777766654 799999886 45888888 789999999999977765543
No 33
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=53.09 E-value=14 Score=31.48 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=52.5
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q psy7749 189 SVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVAIR 267 (319)
Q Consensus 189 ~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~iR 267 (319)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.+.|- .-.+..+||++||.-|-..+..=
T Consensus 69 ~AP~VvAKG~g~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 131 (144)
T 2jlj_A 69 PLPLVTFKYTDAQVQTVRKIAEE--------------EGVPILQR---IPLARALYWDALVDHYIPAEQIEATAEVLRWL 131 (144)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Confidence 45766767788999999999974 89999886 45888887 78899999999998888777665
Q ss_pred HHHhh
Q psy7749 268 KHLER 272 (319)
Q Consensus 268 KHLe~ 272 (319)
-.|+.
T Consensus 132 ~~l~~ 136 (144)
T 2jlj_A 132 ERQNI 136 (144)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 55544
No 34
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=51.22 E-value=6.1 Score=37.91 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=28.1
Q ss_pred CCCCCCCCCcCCCCCCCCCCCc----------cCChhHHHHHHHHHhhCCCCccchhhhh
Q psy7749 173 HTPGKGISKSALPYRRSVPNWL----------KLTSEDVKDHIFKLSKKGLTPSQIGVIL 222 (319)
Q Consensus 173 hs~~kG~S~S~~Py~~~~P~Wl----------~~s~eEVe~~IvkLaKkG~tpSqIG~iL 222 (319)
++.|.+.-+|..+-..+.|+|- ++|.||.++.+-.+..--+||+|||-.|
T Consensus 6 ~~~~~~~~~~p~~~~~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL 65 (377)
T 3r88_A 6 GSSGGSRGGSPKAEAASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFA 65 (377)
T ss_dssp ------------------CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4555555566666666789997 6799999999999999889999998755
No 35
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=49.27 E-value=12 Score=31.36 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=34.5
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCC
Q psy7749 189 SVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLA 249 (319)
Q Consensus 189 ~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGla 249 (319)
.+-+|++++.+++++.-..+++-|-+++ +.++|+.+.+++++-||-
T Consensus 12 ~~~~~~~~~~~~L~~~F~~Fa~fG~~~~---------------~~M~~k~f~K~~kD~~li 57 (125)
T 1pul_A 12 AAAAGFNWDDADVKKRWDAFTKFGAATA---------------TEMTGKNFDKWLKDAGVL 57 (125)
T ss_dssp ------CCCHHHHHHHHHHHHHHTCSSS---------------SCCCHHHHHHHHHHHTSC
T ss_pred HHHHhcCccHHHHHHHHHHHHhcCCCcc---------------ccCcHHHHHHHHHHCCCC
Confidence 4578999999999999999999887775 568888888888888876
No 36
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=48.82 E-value=12 Score=37.30 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=29.2
Q ss_pred ChhHHHHHHHHHhhCCC---CccchhhhhhcccCCCcee
Q psy7749 197 TSEDVKDHIFKLSKKGL---TPSQIGVILRDSHGVAQVR 232 (319)
Q Consensus 197 s~eEVe~~IvkLaKkG~---tpSqIG~iLRD~~GIP~VK 232 (319)
.-+++++.|.+++...+ ||.|+|.+|.|..|+|..|
T Consensus 174 ~~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lgl~~~~ 212 (540)
T 4dfk_A 174 EIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIG 212 (540)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCC
Confidence 34678888888884433 8999999999999999766
No 37
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=47.60 E-value=19 Score=29.98 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=42.5
Q ss_pred CCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHH
Q psy7749 16 PNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKK 79 (319)
Q Consensus 16 p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LikK 79 (319)
+.+++..+....++..|..|+. +||||-+.. ..+.+.|- .-.+..+||++||.-+-.
T Consensus 60 ~AP~VvAKG~~~~A~~I~~~A~----e~~VPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAe 117 (123)
T 2jli_A 60 PLPLVTFKYTDAQVQTVRKIAE----EEGVPILQR---IPLARALYWDALVDHYIPAEQIEATAE 117 (123)
T ss_dssp SSCEEEEEEETHHHHHHHHHHH----HHTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHH----HcCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 4555554445677777766654 799999886 46888887 788999999999976644
No 38
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=47.21 E-value=18 Score=30.57 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=48.4
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q psy7749 189 SVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVA 265 (319)
Q Consensus 189 ~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~ 265 (319)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.+.|- .-.+..+||++||.-|-..+.
T Consensus 70 ~AP~VvAKG~g~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa 130 (137)
T 3bzs_A 70 PLPLVIETGKDAKALQIIKLAEL--------------YDIPVIED---IPLARSLYKNIHKGQYITEDFFEPVAQLIR 130 (137)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHSCTTCBCCGGGHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Confidence 45766666788999999999974 89999886 45888887 788999999999977765544
No 39
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=49.13 E-value=5.1 Score=31.54 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=42.6
Q ss_pred CCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q psy7749 16 PNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKAVA 82 (319)
Q Consensus 16 p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LikKAv~ 82 (319)
+.+++..+..++++..|..|+ .+||||-+.. ..+.|.|- .-.+..+||++||.-+-....
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A----~e~~VPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa 76 (87)
T 3b1s_B 16 KAPVVVAKGKGTIAQKIVEIA----ENYSIPVVRK---PELARALYPAVEVGKEISPKFYKAVAEIIA 76 (87)
Confidence 444555444567777776665 4799999886 45777776 778889999999976654443
No 40
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.36 E-value=41 Score=25.51 Aligned_cols=50 Identities=24% Similarity=0.079 Sum_probs=34.5
Q ss_pred CCCCcCCCCCCCCCCCcc-CChhHHHHHHHHHhhCCCCccchhhhhhcccC
Q psy7749 178 GISKSALPYRRSVPNWLK-LTSEDVKDHIFKLSKKGLTPSQIGVILRDSHG 227 (319)
Q Consensus 178 G~S~S~~Py~~~~P~Wl~-~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~G 227 (319)
|.|+|--|+-...|...+ .|+++++.+-..+.+.-++...--..|-.+-|
T Consensus 1 gss~s~~~~p~~~p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~ 51 (89)
T 2dmp_A 1 GSSGSSGAYPDFAPQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETK 51 (89)
T ss_dssp CCSSCCCCCSCCCSSCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCccccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhC
Confidence 778888888888887777 89998888877776665554444333433333
No 41
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=41.27 E-value=24 Score=29.33 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=46.5
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHH-HcCCCCCChhhHHHHHHHH
Q psy7749 189 SVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMK-AMGLAPNLPEDLYCLIKKA 263 (319)
Q Consensus 189 ~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKA 263 (319)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.+.|- .-.+..+||++||.-+-..
T Consensus 60 ~AP~VvAKG~~~~A~~I~~~A~e--------------~~VPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAei 118 (123)
T 2jli_A 60 PLPLVTFKYTDAQVQTVRKIAEE--------------EGVPILQR---IPLARALYWDALVDHYIPAEQIEATAEV 118 (123)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHH
Confidence 45766666788999999999874 89998876 45888887 7889999999999766443
No 42
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=40.51 E-value=46 Score=26.17 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=43.5
Q ss_pred CCCCcCCCC----CCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHH----HHHcCCC
Q psy7749 178 GISKSALPY----RRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRI----MKAMGLA 249 (319)
Q Consensus 178 G~S~S~~Py----~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~I----Lk~nGla 249 (319)
|.|+|.-|. ...+..| |+|||.+-+.++ |+.- ..|.+ +.|+|..++.. |++-++.
T Consensus 1 ~~~~~~~~~p~~~~~~v~~W---s~edV~~WL~~~---Gl~~------Y~~~F-----~~IdG~~LL~Lt~~dLk~~~Lg 63 (97)
T 2d8c_A 1 GSSGSSGMLSARTMKEVVYW---SPKKVADWLLEN---AMPE------YCEPL-----EHFTGQDLINLTQEDFKKPPLY 63 (97)
T ss_dssp CCCSSCSCCCCSCCSCCSSC---CTTHHHHHHHHT---TCTT------TTTTT-----TTCCHHHHHTCCHHHHHSSSSS
T ss_pred CCCCCCCCCCCCCCCchhhC---CHHHHHHHHHHc---CCHH------HHHHH-----HcCCCHHHhcCCHHHHhhCCCC
Confidence 456666543 3455678 789988887654 5421 11333 34999988754 6764454
Q ss_pred CCChhhHHHHHHHHHHHH
Q psy7749 250 PNLPEDLYCLIKKAVAIR 267 (319)
Q Consensus 250 peIPEDL~~LIkKAv~iR 267 (319)
-.-.-+-..|+...-.||
T Consensus 64 I~~~g~rkkl~~~I~~L~ 81 (97)
T 2d8c_A 64 RVSSDNGQRLLDMIETLK 81 (97)
T ss_dssp SCSTTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 455566666665555554
No 43
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=40.37 E-value=28 Score=32.80 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHH
Q psy7749 197 TSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKA 263 (319)
Q Consensus 197 s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKA 263 (319)
...+.+..|-.|..-|++|+|||.+|.-..+|-.- +=..+...|..-|+. |||+..+|+++
T Consensus 42 ~~~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~---~l~~~i~~L~~LGls---~e~V~kiL~k~ 102 (335)
T 4fp9_B 42 GSLELERVMSSLLDMGFSNAHINELLSVRRGASLQ---QLLDIISEFILLGLN---PEPVCVVLKKS 102 (335)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH---HHHHHHHHHHHTTCC---HHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHCCCCHHHHHHHHHhCcccchh---HHHHHHHHHHHcCCC---HHHHHHHHHhC
Confidence 45677888888888899999999999888766321 112344566667765 56666666654
No 44
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=40.27 E-value=32 Score=26.20 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=30.4
Q ss_pred cCChhHHHHHHHHHh-hCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCC
Q psy7749 195 KLTSEDVKDHIFKLS-KKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGL 248 (319)
Q Consensus 195 ~~s~eEVe~~IvkLa-KkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGl 248 (319)
.+++++. +.|+.+. ..+.|+.+|...| |+ .+.-..|.++|+++|+
T Consensus 60 ~l~~~~~-~~i~~~~~~~~~s~~~i~~~l----g~----~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDE-RNVIRAASNSCKTARDIRNEL----QL----SASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHH-HHHHHHHHHCCCCHHHHHHHT----TC----CSCHHHHHHHHHHTC-
T ss_pred cCCHHHH-HHHHHHHhCCCCCHHHHHHHH----CC----CccHHHHHHHHHHCCC
Confidence 3466665 4455544 4568999988776 65 2455679999999998
No 45
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=39.32 E-value=21 Score=32.07 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=56.0
Q ss_pred hHHHHhhhhhHHHHHh-cCcCCCCCc---cchHHHHHHHhcCccccccCCcceeeccccccccchhhhcchhhhccCCCC
Q psy7749 101 ILVESRIHRLARYYKT-KAVLPPNWK---YESATASAFILEGFRFRTRRGFRYKIDLVGLLDDNFYNKKSLKMGRMHTPG 176 (319)
Q Consensus 101 ~LiESkI~RL~rYYk~-~~~LP~~Wk---Y~~~tA~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~MaRMhs~~ 176 (319)
.-++..|.+..+..++ +|+=|..|. |++.+.++|...| ||+|..+..+- |.-|+.. ..+
T Consensus 139 ~~~~~ei~~~~~~l~~~~G~~p~g~r~~~~~~~~~~~l~~~G-------~~~y~ss~~~~-d~Py~~~---------~~~ 201 (308)
T 3cl6_A 139 AQEREHMLEAIRILTELTGERPLGWYTGRTGPNTRRLVMEEG-------GFLYDCDTYDD-DLPYWEP---------NNP 201 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSEECCSSCCTTHHHHHHHHC-------CCSEECCCCCC-SSCEECS---------CCT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceEECCCCCHHHHHHHHHCC-------CceEEeccCCC-CCceeee---------cCC
Confidence 3344455555444443 366566665 4788999999888 44554443320 1122211 122
Q ss_pred CCCCCcCCCCCCCCCCCcc------CChhHHHHHHHHH----hhCCC-Cccchhhhhhcc
Q psy7749 177 KGISKSALPYRRSVPNWLK------LTSEDVKDHIFKL----SKKGL-TPSQIGVILRDS 225 (319)
Q Consensus 177 kG~S~S~~Py~~~~P~Wl~------~s~eEVe~~IvkL----aKkG~-tpSqIG~iLRD~ 225 (319)
.+..--..|+.-..-.|.- .+++++.+.+.+. .+.|- .|..+.+.+-|.
T Consensus 202 ~~~~~~~iP~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~p~~~~Il~H~~ 261 (308)
T 3cl6_A 202 TGKPHLVIPYTLDTNDMRFTQVQGFNKGDDFFEYLKDAFDVLYAEGAEAPKMLSIGLHCR 261 (308)
T ss_dssp TCSCCEECCCCSSSBGGGGGSSSCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEHH
T ss_pred CCCCEEEEccccccCceeeeccCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEeCcc
Confidence 2222334555544444432 4788877766554 35664 555555556554
No 46
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=37.91 E-value=20 Score=31.67 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=32.8
Q ss_pred CccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCC
Q psy7749 193 WLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVA 229 (319)
Q Consensus 193 Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP 229 (319)
|...+..|+...|+.+.+.|.+.++|...|...||--
T Consensus 3 ~~~~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~ 39 (345)
T 3hot_A 3 SFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQ 39 (345)
T ss_dssp --CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSC
T ss_pred cccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCC
Confidence 8888999999999999999999999999999999843
No 47
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=44.00 E-value=6.9 Score=32.27 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=47.5
Q ss_pred CCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHH-HHcCCCCCChhhHHHHHHHHHHHHHHHh
Q psy7749 16 PNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIM-KAMGLAPNLPEDLYCLIKKAVAIRKHLE 88 (319)
Q Consensus 16 p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~IL-k~nGlapeIPEDL~~LikKAv~lRkHLe 88 (319)
+.+++..+-..+++..|..|+ .+||||-+.. ..+.+.| ..-.+..+||++||.-|-..+..--.|+
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A----~e~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v~~l~ 82 (114)
T 3b0z_B 16 SAPKVVAKGAGLIALRIREIG----AEHRVPTLEA---PPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 82 (114)
Confidence 445555444567777776665 3799999886 4578888 5678889999999988877666555454
No 48
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=36.31 E-value=24 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.6
Q ss_pred CccCChhHHHHHHHHHhhCCCCccchhhhh
Q psy7749 193 WLKLTSEDVKDHIFKLSKKGLTPSQIGVIL 222 (319)
Q Consensus 193 Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iL 222 (319)
.-++++++|.+.+..|.++|++|+.+...+
T Consensus 50 l~~It~~~i~~~~~~l~~~~~s~~t~~~~~ 79 (117)
T 2kkp_A 50 LKKLQPADIQRLYASKLESGLSPTRVRYIH 79 (117)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 346799999999999999999999887655
No 49
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=35.18 E-value=21 Score=25.96 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=25.4
Q ss_pred ccCChhHHHHHHHHHhhCCCCccchhhhhh
Q psy7749 194 LKLTSEDVKDHIFKLSKKGLTPSQIGVILR 223 (319)
Q Consensus 194 l~~s~eEVe~~IvkLaKkG~tpSqIG~iLR 223 (319)
-++++++|.+.+..|.++|++|+.|...+.
T Consensus 49 ~~it~~~i~~~~~~l~~~g~s~~t~~~~~~ 78 (118)
T 2kd1_A 49 AKLTSLHMQNYVNSLRDEGLKRGTIEKIIK 78 (118)
T ss_dssp GGCCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457899999999999999999998876653
No 50
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=34.98 E-value=18 Score=26.21 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=33.1
Q ss_pred CCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCC
Q psy7749 211 KGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNL 252 (319)
Q Consensus 211 kG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeI 252 (319)
-|+|+|-|..+|.+.-+=-.|..-|-.+|.++.++-|..|..
T Consensus 10 aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 10 AGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 499999999999876411146678889999999999998875
No 51
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=34.61 E-value=34 Score=34.15 Aligned_cols=47 Identities=11% Similarity=0.293 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhhCC---CCccchhhhhhcccCCCcee------eeccchHHHHHH
Q psy7749 198 SEDVKDHIFKLSKKG---LTPSQIGVILRDSHGVAQVR------FVSGNKILRIMK 244 (319)
Q Consensus 198 ~eEVe~~IvkLaKkG---~tpSqIG~iLRD~~GIP~VK------~vtGkkI~~ILk 244 (319)
-+++++.|.+++-.- -||.|+|.+|-|..|+|..| .-|...+++-|.
T Consensus 240 ~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lglp~~kktk~g~~st~~~vL~~l~ 295 (605)
T 2kfn_A 240 LAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELA 295 (605)
T ss_dssp HHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSCCCCCC----TTTCCHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCCcCCCCCccccHHHHHHHH
Confidence 356666777777422 37899999999999998544 244556666664
No 52
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=33.97 E-value=25 Score=29.22 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=42.9
Q ss_pred hhHHHHHHHHH---------HHHHHHhhhcCcccchhh---HHHHHHhh-hhhHHHHHhcCc-CCC
Q psy7749 254 EDLYCLIKKAV---------AIRKHLERSRKDKDSKFR---LILVESRI-HRLARYYKTKAV-LPP 305 (319)
Q Consensus 254 EDL~~LIkKAv---------~iRKHLe~n~KD~~sKr~---L~LiESkI-~RL~rYYK~~~~-LP~ 305 (319)
|+|+++|-+|- .+|+-|+++-|.+++... .++|-+|. +.+++||=.... +|+
T Consensus 6 q~L~~~lS~AY~DpeVk~~p~Lr~~lf~~Ak~L~~~~d~~~y~~V~~KLs~~IS~Y~l~hh~~~P~ 71 (111)
T 1tdp_A 6 QTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPS 71 (111)
T ss_dssp HHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCTTSCCCCCG
T ss_pred HHHHHHHHHHhCCHhhhcCHHHHHHHHHHHHHhccCCCcchhHhHHHHHHhHHHHHHHHhcccCcH
Confidence 68889888884 589999999999988775 88888887 568999988776 665
No 53
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=33.80 E-value=33 Score=24.73 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=38.0
Q ss_pred CccCChhHHHHHHHHHhh-CCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCChh
Q psy7749 193 WLKLTSEDVKDHIFKLSK-KGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPE 254 (319)
Q Consensus 193 Wl~~s~eEVe~~IvkLaK-kG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeIPE 254 (319)
+-++++++|.+.+..|.+ +|++|+-|...+.- + +.+.+.+.+.|+-..=|-
T Consensus 49 l~~it~~~i~~~~~~l~~~~~~s~~Ti~~~~~~------l-----r~~~~~a~~~~~i~~nP~ 100 (112)
T 2key_A 49 FHELTEDFLRDYLIYMKKTLCNADSTAQRNLST------I-----KIYVSAAIKKGYMENDPF 100 (112)
T ss_dssp TTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHH------H-----HHHHHHHHHTTSCCSCHH
T ss_pred HHHcCHHHHHHHHHHHHHccCcchhhHHHHHHH------H-----HHHHHHHHHCCCcccCCc
Confidence 557899999999999998 99999988877652 2 236666777777555453
No 54
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=33.12 E-value=12 Score=29.90 Aligned_cols=28 Identities=14% Similarity=0.372 Sum_probs=22.2
Q ss_pred cCChhHHHHHHHHHhhCCCCccchhhhhhccc
Q psy7749 195 KLTSEDVKDHIFKLSKKGLTPSQIGVILRDSH 226 (319)
Q Consensus 195 ~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~ 226 (319)
..+++|+++.+-+|++.. .||+++-.|.
T Consensus 35 ~~~~ee~~~~~~~l~~~~----digIIlIte~ 62 (102)
T 2i4r_A 35 VTSDEEIVKAVEDVLKRD----DVGVVIMKQE 62 (102)
T ss_dssp CCSHHHHHHHHHHHHHCS----SEEEEEEEGG
T ss_pred CCCHHHHHHHHHHHhhCC----CeEEEEEeHH
Confidence 358899999999999874 6777776654
No 55
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=32.91 E-value=30 Score=25.88 Aligned_cols=53 Identities=8% Similarity=0.086 Sum_probs=41.2
Q ss_pred CCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCChhh
Q psy7749 192 NWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPED 255 (319)
Q Consensus 192 ~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeIPED 255 (319)
.|.++++++|.+-+..|.++|++|+-|-..|.- + +.+.+.|.+.|+-+.=|-+
T Consensus 50 ~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~------l-----r~f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 50 AMRELTGWKLDEYETFRRGSDVSPATLNGEMQT------L-----KNWLEYLARIDVVDEDLPE 102 (117)
T ss_dssp SGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH------H-----HHHHHHHHHTTSSCTTSGG
T ss_pred ChHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHH------H-----HHHHHHHHHcCCcccCHHH
Confidence 577889999999999999999999988877641 2 3377788888876655543
No 56
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=32.63 E-value=78 Score=26.01 Aligned_cols=74 Identities=9% Similarity=0.264 Sum_probs=48.7
Q ss_pred cCChhHHHHHHHHHhhC-------CC-------CccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHH
Q psy7749 195 KLTSEDVKDHIFKLSKK-------GL-------TPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLI 260 (319)
Q Consensus 195 ~~s~eEVe~~IvkLaKk-------G~-------tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeIPEDL~~LI 260 (319)
..+++++.+.+.+..++ |+ ||+.++..|.+..+++ |+-|+|-.+--.|+.-..+- .-.+|-.|+
T Consensus 41 ~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~n~a~~l~~~~~~~-v~vI~gvnlpmllea~~~~~-~~~~L~el~ 118 (139)
T 3gdw_A 41 TMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSFGNMLFEETGIR-TKAITMTSTMIVLEAIRMAS-VGRSLEDIY 118 (139)
T ss_dssp TSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGGGHHHHHHHHHCCC-EEEECSCCHHHHHHHHHHHH-TTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHHHHHHHHHHhhCCC-EEEEeCCCHHHHHHHHHHhh-cCCCHHHHH
Confidence 44788888888777643 33 8999999998876654 99999999876665321100 123566666
Q ss_pred HHH-HHHHHHH
Q psy7749 261 KKA-VAIRKHL 270 (319)
Q Consensus 261 kKA-v~iRKHL 270 (319)
..| .+++...
T Consensus 119 ~~~~~~~~~~~ 129 (139)
T 3gdw_A 119 QNIQLSFESVV 129 (139)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 666 4554443
No 57
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=29.34 E-value=76 Score=25.63 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=43.3
Q ss_pred cCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHHHH
Q psy7749 195 KLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRK 268 (319)
Q Consensus 195 ~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv~iRK 268 (319)
+++ +|+.+.||++...|.|-.+|- ...|||.... +.+-|.++ +++..-+++|-..+.
T Consensus 12 k~t-~e~~e~I~~~i~~G~sl~~i~----~~~~~ps~~T-----~~~W~~~~-------~ef~e~~~~Ar~~~~ 68 (140)
T 4dyq_A 12 DYM-PEVADDICSLLSSGESLLKVC----KRPGMPDKST-----VFRWLAKH-------EDFRDKYAKATEARA 68 (140)
T ss_dssp SCC-TTHHHHHHHHHHTTCCHHHHH----TSTTCCCHHH-----HHHHHHHC-------HHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHCCCcHHHHH----hcCCCCCHHH-----HHHHHHcC-------HHHHHHHHHHHHHHH
Confidence 455 467788999999999988876 3478886655 78888886 568888888866644
No 58
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=28.68 E-value=43 Score=30.05 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=38.6
Q ss_pred HHHHHHHHhh-CCCCccchhhhhhccc-CCCceeeeccch----HHHHHHHcCCCCCChhhHHHHHHHHH
Q psy7749 201 VKDHIFKLSK-KGLTPSQIGVILRDSH-GVAQVRFVSGNK----ILRIMKAMGLAPNLPEDLYCLIKKAV 264 (319)
Q Consensus 201 Ve~~IvkLaK-kG~tpSqIG~iLRD~~-GIP~VK~vtGkk----I~~ILk~nGlapeIPEDL~~LIkKAv 264 (319)
..+.+.++|+ .|.||+|+-+.--=++ ||..| |.|.+ |.+-++.-++.++++++-+.-|..+.
T Consensus 254 ~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~v--I~g~~~~~~l~en~~a~~~~~~L~~e~~~~i~~~~ 321 (327)
T 3eau_A 254 KLKELQAIAERLGCTLPQLAIAWCLRNEGVSSV--LLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSIL 321 (327)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHSSTTCCEE--EECCSSHHHHHHHHGGGGGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHhCCCCceE--EeCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 3456677775 6999999987654444 55332 45544 33334333444578888888777653
No 59
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=28.41 E-value=58 Score=24.99 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=27.0
Q ss_pred CCCccC---ChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceee
Q psy7749 191 PNWLKL---TSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRF 233 (319)
Q Consensus 191 P~Wl~~---s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~ 233 (319)
|.|-++ +.|++++.|....+-.+|.++-+- +||||.-..
T Consensus 6 pk~~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak----~yGVP~sTL 47 (70)
T 2cob_A 6 SGRGRYRQYNSEILEEAISVVMSGKMSVSKAQS----IYGIPHSTL 47 (70)
T ss_dssp CCSSCSCCCCHHHHHHHHHHHHTTSSCHHHHHH----HHTCCHHHH
T ss_pred cccccccccCHHHHHHHHHHHHcCCccHHHHHH----HhCCChHHH
Confidence 666554 788888888776443388877654 599997543
No 60
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=27.80 E-value=74 Score=29.10 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHHHHHhh-CCCCccchhhhhhcccCC--CceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHH
Q psy7749 201 VKDHIFKLSK-KGLTPSQIGVILRDSHGV--AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVA 265 (319)
Q Consensus 201 Ve~~IvkLaK-kG~tpSqIG~iLRD~~GI--P~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv~ 265 (319)
+.+.+.++|+ .|.||+|+.+.--=++|| |.+..-+-..|.+.|+.-++ +++++-+..|..+..
T Consensus 265 ~~~~l~~iA~~~g~t~aqvaL~w~l~~~v~~~I~g~~~~~~l~enl~a~~~--~L~~e~~~~l~~~~~ 330 (348)
T 3n2t_A 265 AMDEFEKLAEKRGKSVMAFAVRWVLDQGPVIALWGARKPGQVSGVKDVFGW--SLTDEEKKAVDDILA 330 (348)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTTEEEEEECSSGGGGTTHHHHSSC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Confidence 4456677775 799999998764444464 55555555666667766555 799888888877653
No 61
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=27.75 E-value=1.2e+02 Score=27.50 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=12.3
Q ss_pred cCCCCCccchHHHHHH
Q psy7749 119 VLPPNWKYESATASAF 134 (319)
Q Consensus 119 ~LP~~WkY~~~tA~~l 134 (319)
+|||.|+++++..+.|
T Consensus 126 Q~Ppsf~~~~~~~~~L 141 (273)
T 1vpq_A 126 QFPFSFKFSRKNVEYL 141 (273)
T ss_dssp ECCTTCCCCHHHHHHH
T ss_pred EcCCCCCCCHHHHHHH
Confidence 6899999988776553
No 62
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=27.56 E-value=48 Score=33.52 Aligned_cols=61 Identities=18% Similarity=0.380 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHhhCCC---CccchhhhhhcccCCCceee-eccchH-HHHHHHcCCCCCChhhHH
Q psy7749 197 TSEDVKDHIFKLSKKGL---TPSQIGVILRDSHGVAQVRF-VSGNKI-LRIMKAMGLAPNLPEDLY 257 (319)
Q Consensus 197 s~eEVe~~IvkLaKkG~---tpSqIG~iLRD~~GIP~VK~-vtGkkI-~~ILk~nGlapeIPEDL~ 257 (319)
.-+++++.|.+++-.-+ ||.|+|.+|-|..|+|..|. -||-+. .++|++-.-..++++.+.
T Consensus 226 ~~~~l~~~~~~~~g~~fN~~Spkql~~~Lf~~lgl~~~kktktg~st~~~vL~~l~~~~p~~~~il 291 (592)
T 3pv8_A 226 QLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENIL 291 (592)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCCEETTEECCCHHHHHHTTTTCTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHHHhhcchHHHHH
Confidence 35677788888875432 68999999999999997653 233222 235554332344554443
No 63
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=26.86 E-value=36 Score=20.77 Aligned_cols=26 Identities=4% Similarity=0.096 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHhhCCCCccchhhhh
Q psy7749 196 LTSEDVKDHIFKLSKKGLTPSQIGVIL 222 (319)
Q Consensus 196 ~s~eEVe~~IvkLaKkG~tpSqIG~iL 222 (319)
+++++. ..|+.+...|+|..+|...|
T Consensus 6 l~~~~~-~~i~~~~~~g~s~~~IA~~l 31 (51)
T 1tc3_C 6 LSDTER-AQLDVMKLLNVSLHEMSRKI 31 (51)
T ss_dssp CCHHHH-HHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHH
Confidence 345554 46667788999999998765
No 64
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=26.58 E-value=36 Score=28.26 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=42.6
Q ss_pred hhHHHHHHHHH---------HHHHHHhhccCcccchhh---HhHHHHhh-hhhHHHHHhcCc-CCCC
Q psy7749 71 EDLYCLIKKAV---------AIRKHLERSRKDKDSKFR---LILVESRI-HRLARYYKTKAV-LPPN 123 (319)
Q Consensus 71 EDL~~LikKAv---------~lRkHLe~n~kDk~~Kr~---L~LiESkI-~RL~rYYk~~~~-LP~~ 123 (319)
|+|+++|-+|- .||+-|+++-+..++... .++|-+|. +.+++||=.... +|+.
T Consensus 6 q~L~~~lS~AY~DpeVk~~p~Lr~~lf~~Ak~L~~~~d~~~y~~V~~KLs~~IS~Y~l~hh~~~P~a 72 (111)
T 1tdp_A 6 QTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPSS 72 (111)
T ss_dssp HHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCTTSCCCCCGG
T ss_pred HHHHHHHHHHhCCHhhhcCHHHHHHHHHHHHHhccCCCcchhHhHHHHHHhHHHHHHHHhcccCcHH
Confidence 68888888774 589999999988888765 88888886 568999988777 7754
No 65
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.46 E-value=52 Score=24.21 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=27.8
Q ss_pred CChhHHHHHHHHHhh--CCCCccchhhhhhcccCCCc-eeeeccchHHHHHHHcC
Q psy7749 196 LTSEDVKDHIFKLSK--KGLTPSQIGVILRDSHGVAQ-VRFVSGNKILRIMKAMG 247 (319)
Q Consensus 196 ~s~eEVe~~IvkLaK--kG~tpSqIG~iLRD~~GIP~-VK~vtGkkI~~ILk~nG 247 (319)
++++ .++.|.++.+ .+.++.+|-..|.++ |++. -..+.-..|.++|+.+|
T Consensus 76 l~~~-~~~~i~~~~~~~~~~s~~~i~~~l~~~-g~~~~~~~~s~~tv~r~l~~~~ 128 (128)
T 1pdn_C 76 ATPE-IENRIEEYKRSSPGMFSWEIREKLIRE-GVCDRSTAPSVSAISRLVRGRD 128 (128)
T ss_dssp SCST-HHHHHHHTTTTCTTCCHHHHHHHHHHT-SSSCSTTCCCHHHHHHHC----
T ss_pred CCHH-HHHHHHHHHHhCcchHHHHHHHHHHHc-CCccccCCcCHHHHHHHHHhcC
Confidence 3443 4566666654 358899999888876 8730 00122344777777654
No 66
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=24.83 E-value=52 Score=34.68 Aligned_cols=52 Identities=33% Similarity=0.592 Sum_probs=39.4
Q ss_pred HHHHhhCC--CCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHH
Q psy7749 205 IFKLSKKG--LTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKK 262 (319)
Q Consensus 205 IvkLaKkG--~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkK 262 (319)
|-++.++| .=|.+.-..|-|.||+|.= . +..|++|+|+.-++|++.+.+|.+
T Consensus 438 ~~~~~~~~~~~l~g~~af~LyDTyGfP~d-l-----t~~ia~e~g~~vd~~~~F~~~m~~ 491 (752)
T 2zze_A 438 IAKLKKKGIKEIPVEXLVTFYESHGLTPE-I-----VXEIAEKEGVKVNIPDNFYSMVAK 491 (752)
T ss_dssp HHHHHHHSCSCCCHHHHHHHHHHHCCCHH-H-----HHHHHTTSSCCCCCCTTHHHHHHG
T ss_pred HHHhhhcCCCccCHHHHHHHHhccCCCHH-H-----HHHHHHHcCCccCCcccHHHHHHH
Confidence 44444433 3477888899999999952 1 456889999999999999987754
No 67
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=24.41 E-value=21 Score=33.66 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=32.4
Q ss_pred CCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCC
Q psy7749 189 SVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGL 248 (319)
Q Consensus 189 ~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGl 248 (319)
..|.|+. +..+...++..|.+ |+|.++|-. |.|.+.+|+|++.|-
T Consensus 269 ~~p~gl~-d~s~~p~L~~~L~~-g~se~~i~k-------------i~g~N~lRv~~~~~~ 313 (318)
T 3neh_A 269 DHVKGLE-HVGKYQSFLETLEK-HYTKEEIEG-------------FASRNFLNHLPKEGH 313 (318)
T ss_dssp SCBBTBS-SGGGHHHHHHHHTT-TSCHHHHHH-------------HHTHHHHHTCCC---
T ss_pred CCCCCCC-CHHHHHHHHHHHHh-cCCHHHHHH-------------HHhHhHHHHHhhhcc
Confidence 3577776 77788888889988 988888765 556777777777663
No 68
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=24.37 E-value=49 Score=30.10 Aligned_cols=62 Identities=23% Similarity=0.197 Sum_probs=40.0
Q ss_pred HHHHHHHHhh-CCCCccchhhhhhcccC---CCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHH
Q psy7749 201 VKDHIFKLSK-KGLTPSQIGVILRDSHG---VAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAV 264 (319)
Q Consensus 201 Ve~~IvkLaK-kG~tpSqIG~iLRD~~G---IP~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv 264 (319)
+.+.+.++|+ .|.||+|+-+.--=++| +|.+..-+-..|.+-++.-++ +++++-+..|..+.
T Consensus 244 ~~~~l~~ia~~~g~t~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~--~L~~e~~~~l~~~~ 309 (337)
T 3v0s_A 244 IYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNVGALKV--XLTKEDLKEISDAV 309 (337)
T ss_dssp -CHHHHHHHHHTTSCHHHHHHHHHHTTCTTBCCCCCCSCHHHHHHHHHGGGC--CCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHhh
Confidence 3356667776 69999999876555565 444444444455555555444 78888887777654
No 69
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=24.25 E-value=16 Score=30.62 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=24.3
Q ss_pred HHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHHhcCccccccCCccee-eccccc--------cccchhhhcch--hhh
Q psy7749 102 LVESRIHRLARYYKTKAVLPPNWKYESATASAFILEGFRFRTRRGFRYK-IDLVGL--------LDDNFYNKKSL--KMG 170 (319)
Q Consensus 102 LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~--~Ma 170 (319)
++=.++-||+|=+.. --...+.|...|.+|.+-... |. .++.|- +....-..++. .-|
T Consensus 58 lvv~~ldRL~R~~~d----------~~~~~~~l~~~gv~l~~~~~~-~d~~~~~~~l~~~i~~~~ae~E~~~i~~R~~~g 126 (193)
T 3plo_X 58 LVVWKLDRLGRSMKH----------LISLVGELRERGINFRSLTDS-IDTSSPMGRFFFHVMGALAEVERELIIERTMAG 126 (193)
T ss_dssp EEESCHHHHCSCHHH----------HHHHHHHHHTTTEEEEESSSC-CBSSSHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred EEEEECCccccCHHH----------HHHHHHHHHHCCCEEEEeccc-ccccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333467888773322 123445667778888877653 21 112211 11111111221 123
Q ss_pred ccCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhh
Q psy7749 171 RMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILR 223 (319)
Q Consensus 171 RMhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLR 223 (319)
..+++.+|..+...|+ +++++| +.|.+|..+|+|.++|...|-
T Consensus 127 ~~~~~~~G~~~Gr~p~---------~~~~~v-~~i~~l~~~G~s~~~Ia~~l~ 169 (193)
T 3plo_X 127 LAAARNKGRIGGRPPK---------LTKAEW-EQAGRLLAQGIPRKQVALIYD 169 (193)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHcCCcCCcCCC---------CCHHHH-HHHHHHHHCCCCHHHHHHHHC
Confidence 3445556654443443 244444 568888889999999987764
No 70
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=23.44 E-value=18 Score=26.90 Aligned_cols=11 Identities=55% Similarity=0.951 Sum_probs=9.3
Q ss_pred CCCChhhHHHH
Q psy7749 66 APNLPEDLYCL 76 (319)
Q Consensus 66 apeIPEDL~~L 76 (319)
.|++|+||.+|
T Consensus 7 EpDLP~DL~~l 17 (57)
T 2ka4_B 7 EPDLPHDLRHL 17 (57)
T ss_dssp CCCCCHHHHTS
T ss_pred CCCccHHHHHh
Confidence 58999999876
No 71
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=23.06 E-value=2.5e+02 Score=22.75 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=40.0
Q ss_pred hhccCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCC
Q psy7749 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGL 248 (319)
Q Consensus 169 MaRMhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGl 248 (319)
||.-|-.---...=.-||......|. +|++|..+.-.-..+- .+ .=| .|+|..+..+|...||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~~~W~-it~ee~~~y~~iF~~l--D~-~dG-------------~Isg~elr~~~~~sgL 63 (121)
T 3fia_A 1 MGHHHHHHSHVAQFPTPFGGSLDTWA-ITVEERAKHDQQFHSL--KP-ISG-------------FITGDQARNFFFQSGL 63 (121)
T ss_dssp ---------------CTTSCCTTTSC-CCHHHHHHHHHHHHHT--CC-BTT-------------BEEHHHHHHHHGGGCC
T ss_pred CCccccchhHHHhccccccCCCCCCC-CCHHHHHHHHHHHHHh--CC-CCC-------------eECHHHHHHHHHHcCC
Confidence 44444333333344457878888998 6888876643333221 11 112 5899999999999887
Q ss_pred CCCChhhHHHHHHHH
Q psy7749 249 APNLPEDLYCLIKKA 263 (319)
Q Consensus 249 apeIPEDL~~LIkKA 263 (319)
. .++|..++.-|
T Consensus 64 p---~~~L~~Iw~la 75 (121)
T 3fia_A 64 P---QPVLAQIWALA 75 (121)
T ss_dssp C---HHHHHHHHHHH
T ss_pred C---HHHHHHHHHHH
Confidence 5 55666665544
No 72
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=22.80 E-value=15 Score=31.07 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=28.6
Q ss_pred CCccCChhHHHHHHHHHhhCCCCccchhhhhhc-----ccCCCceeeeccchHHHHHHHcCCCCCChhhHHHH
Q psy7749 192 NWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRD-----SHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCL 259 (319)
Q Consensus 192 ~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD-----~~GIP~VK~vtGkkI~~ILk~nGlapeIPEDL~~L 259 (319)
.|..-.++|..+.+.+.. .|+++..+-..++. .+++...-.-.=..+.+.|.+.|+-+.-|+|++-|
T Consensus 209 ~~~~~~p~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~g~i~~~~~~~~~~ 280 (280)
T 1zbm_A 209 AFAIENPDEAIEYAMKYS-RGLDRERAKRFAMMYVNDYTYNMPESVDAALKKLYEMAEAKGLIKMPKLDILRL 280 (280)
T ss_dssp HHHHHSHHHHHHHHGGGC-TTCCHHHHHHHHHHHSSHHHHSCCHHHHHHHHHHHHHHHTTTCC----------
T ss_pred HHHHHCHHHHHHHHHHHh-ccCCHHHHHHHHHhhhccCCcCcCHHHHHHHHHHHHHHHHcCCcCCCChhhccC
Confidence 355555666665554432 27777665543321 12222110000024667799999999999998865
No 73
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.91 E-value=76 Score=24.40 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=27.0
Q ss_pred CCccCChhHHH--HHHHHHhhCCCCccchhhhhhc
Q psy7749 192 NWLKLTSEDVK--DHIFKLSKKGLTPSQIGVILRD 224 (319)
Q Consensus 192 ~Wl~~s~eEVe--~~IvkLaKkG~tpSqIG~iLRD 224 (319)
-.-.++.++|+ ..|..|...|+|..+|..+|.+
T Consensus 36 g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 36 GHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 34457888887 4688999999999999999975
No 74
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=21.49 E-value=51 Score=31.70 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhCCCCccchhhhhhcc
Q psy7749 200 DVKDHIFKLSKKGLTPSQIGVILRDS 225 (319)
Q Consensus 200 EVe~~IvkLaKkG~tpSqIG~iLRD~ 225 (319)
.|.+.|.+|.++|++++.|+++.|+.
T Consensus 332 ~ia~~I~~l~~~g~~~~diaVL~r~~ 357 (647)
T 3lfu_A 332 FVVNRIKTWQDNGGALAECAILYRSN 357 (647)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEESSG
T ss_pred HHHHHHHHHHHcCCCccCEEEEEeCc
Confidence 46677888888999999999999984
No 75
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=21.38 E-value=1.6e+02 Score=26.56 Aligned_cols=64 Identities=6% Similarity=0.078 Sum_probs=39.5
Q ss_pred HHHHHHHHHhh-CCCCccchhhhhhcccCCCceeeeccchHHHHHHHc-CC--CCCChhhHHHHHHHHH
Q psy7749 200 DVKDHIFKLSK-KGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAM-GL--APNLPEDLYCLIKKAV 264 (319)
Q Consensus 200 EVe~~IvkLaK-kG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~n-Gl--apeIPEDL~~LIkKAv 264 (319)
++.+.+.++|+ .|.||+|+-+.--=++|-. +-.|.|.+=.+-|++| +. ..+++++-+..|..+.
T Consensus 265 ~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v-~~~I~g~~~~~~l~en~~a~~~~~Ls~e~~~~i~~~~ 332 (346)
T 3n6q_A 265 NSLRLLNEMAQQRGQSMAQMALSWLLKDDRV-TSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHI 332 (346)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSSTTC-SEEEECCSSHHHHHHHHGGGGCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHhCCCC-cEEEcCCCCHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 44556777775 7999999987655555411 2234454433334444 32 3689988888877764
No 76
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=20.84 E-value=91 Score=23.64 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=25.5
Q ss_pred hhccc-cCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHH
Q psy7749 38 ILRDS-HGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAV 81 (319)
Q Consensus 38 iLRD~-~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv 81 (319)
+|||+ +|||.- .|-+|++..|. ..|.+|.+.-+..++
T Consensus 3 ~~r~~~~~ip~~------~I~Riar~~Gv-~rIs~da~~~l~~~l 40 (84)
T 2hue_C 3 VLRDNIQGITKP------AIRRLARRGGV-KRISGLIYEETRGVL 40 (84)
T ss_dssp CGGGGCCSSCHH------HHHHHHHHTTC-CEECTTHHHHHHHHH
T ss_pred cccccCCCCCHH------HHHHHHHHcCc-hhccHHHHHHHHHHH
Confidence 57776 676643 58899998886 567777666555443
No 77
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=20.75 E-value=44 Score=26.05 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=38.4
Q ss_pred CChhHHHHHHHHHhhCCCCccchhhhhhcccCCC------ceeeeccchHHHHHHHcCC
Q psy7749 196 LTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVA------QVRFVSGNKILRIMKAMGL 248 (319)
Q Consensus 196 ~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP------~VK~vtGkkI~~ILk~nGl 248 (319)
+.-+++-..|.++-...-|..+|...|.++|+++ +|. ..++.|.++|+
T Consensus 39 i~Ln~~a~~Iw~l~DG~rtv~eIv~~L~~~y~~~~e~i~~DV~-----~FL~~L~~~g~ 92 (95)
T 3g2b_A 39 VELDDIALVVAQRYDGTQSLAQIAQTLAAEFDADASEIETDVI-----ELTTTLHQKRL 92 (95)
T ss_dssp CCCCTHHHHHHHHCCSSSCHHHHHHHHHHHTTCCHHHHHHHHH-----HHHHHHHHTTC
T ss_pred eecCHHHHHHHHHccCCCCHHHHHHHHHHHcCCcHHHHHHHHH-----HHHHHHHHCcC
Confidence 3567788889999998999999999999999988 332 26667777775
No 78
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=20.73 E-value=56 Score=24.53 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.7
Q ss_pred ccCChhHHHHHHHHHhhCCC
Q psy7749 194 LKLTSEDVKDHIFKLSKKGL 213 (319)
Q Consensus 194 l~~s~eEVe~~IvkLaKkG~ 213 (319)
+.+++|||-+...+|+.||+
T Consensus 35 ygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 35 YGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HCCCHHHHHHHHHHHHHTTS
T ss_pred hCCCHHHHHHHHHHHHHCCC
Confidence 35689999999999999996
No 79
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=20.71 E-value=1.2e+02 Score=27.21 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=38.0
Q ss_pred HHHHHHHHHh-hCCCCccchhhhhhcccCC---CceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHH
Q psy7749 200 DVKDHIFKLS-KKGLTPSQIGVILRDSHGV---AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAV 264 (319)
Q Consensus 200 EVe~~IvkLa-KkG~tpSqIG~iLRD~~GI---P~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv 264 (319)
++.+.+.++| +.|.||+|+-+.--=++|. |.+..-+-..|.+.|+.-+ -+++++.+.-|..+.
T Consensus 272 ~~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~~I~g~~~~~~l~enl~a~~--~~L~~e~~~~l~~~~ 338 (346)
T 1lqa_A 272 KAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLH--LELSEDVLAEIEAVH 338 (346)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHTCTTEEEEEECCSSHHHHHHHHGGGG--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHH
Confidence 4445666676 4799999998766556652 3333333333444444433 378887777676553
No 80
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=20.45 E-value=84 Score=22.60 Aligned_cols=31 Identities=10% Similarity=-0.069 Sum_probs=18.8
Q ss_pred CCCccchhhhhhcccCCCceeeeccchHHHHHHHcCC
Q psy7749 212 GLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGL 248 (319)
Q Consensus 212 G~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGl 248 (319)
|+|+|.|..+-+... .| +-..+.+|.+.-|+
T Consensus 38 gis~~~is~~E~G~~-~p-----~~~~l~~ia~~l~v 68 (86)
T 3eus_A 38 DKPQSFVAKVETRER-RL-----DVIEFAKWMAACEG 68 (86)
T ss_dssp TCCHHHHHHHHTTSS-CC-----BHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHCCCC-CC-----CHHHHHHHHHHcCC
Confidence 667777776666554 23 33346677777676
No 81
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=20.26 E-value=48 Score=25.86 Aligned_cols=25 Identities=28% Similarity=0.736 Sum_probs=21.5
Q ss_pred HHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHh
Q psy7749 81 VAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKT 116 (319)
Q Consensus 81 v~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~ 116 (319)
-+++.|++-|. -|.|||-+.-||+.
T Consensus 12 ~N~k~hi~mn~-----------~edKIhAmNaYYrs 36 (80)
T 2gsv_A 12 ENLKQHIEMNQ-----------SEDKIHAMNSYYRS 36 (80)
T ss_dssp HHHHHHHHHCS-----------SSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-----------cHhHHHHHHHHHHH
Confidence 47899999987 47799999999986
No 82
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=20.24 E-value=60 Score=31.60 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=29.2
Q ss_pred hhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHHhcCccccccCCc
Q psy7749 98 FRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFILEGFRFRTRRGF 147 (319)
Q Consensus 98 r~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~~~~~~~~~~~~ 147 (319)
.++.+--.+|+++.+ .|..||+|---|+.++.|.. .|+.|+.+|+
T Consensus 351 ~~~~iSGT~~R~~L~----~G~~pP~~f~rpeV~~iL~~-~~~~r~~qg~ 395 (395)
T 1r6x_A 351 RTLNISGTELRRRLR----VGGEIPEWFSYPEVVKILRE-SNPPRPKGSS 395 (395)
T ss_dssp CCBCCCHHHHHHHHH----HTCCCCTTTSCHHHHHHHTT-C---------
T ss_pred ceEccCHHHHHHHHH----CcCCCCcccCCHHHHHHHHH-hcCChhhcCC
Confidence 346666789999876 69999999999999996655 8999998885
Done!