Your job contains 1 sequence.
>psy7749
MNFYMEPQFNETTLGPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIM
KAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVL
PPNWKYESATASAFILEGFRFRTRRGFRYKIDLVGLLDDNFYNKKSLKMGRMHTPGKGIS
KSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKIL
RIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTK
AVLPPNWKYESATASALVA
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7749
(319 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q6ITC7 - symbol:RPS13 "40S ribosomal protein S1... 685 1.9e-67 1
UNIPROTKB|Q56JX8 - symbol:RPS13 "40S ribosomal protein S1... 685 1.9e-67 1
UNIPROTKB|P62277 - symbol:RPS13 "40S ribosomal protein S1... 685 1.9e-67 1
RGD|621027 - symbol:Rps13 "ribosomal protein S13" species... 685 1.9e-67 1
ZFIN|ZDB-GENE-040625-52 - symbol:rps13 "ribosomal protein... 678 1.1e-66 1
UNIPROTKB|F6Q5P0 - symbol:RPS13 "40S ribosomal protein S1... 674 2.8e-66 1
UNIPROTKB|E1BGR6 - symbol:E1BGR6 "Uncharacterized protein... 669 9.4e-66 1
FB|FBgn0010265 - symbol:RpS13 "Ribosomal protein S13" spe... 664 3.2e-65 1
WB|WBGene00004482 - symbol:rps-13 species:6239 "Caenorhab... 611 1.3e-59 1
TAIR|locus:2126936 - symbol:RPS13A "ribosomal protein S13... 598 3.2e-58 1
UNIPROTKB|G4NCQ6 - symbol:MGG_00349 "40S ribosomal protei... 597 4.0e-58 1
SGD|S000002471 - symbol:RPS13 "Protein component of the s... 596 5.1e-58 1
TAIR|locus:2101901 - symbol:AT3G60770 species:3702 "Arabi... 593 1.1e-57 1
ASPGD|ASPL0000002296 - symbol:AN6679 species:162425 "Emer... 592 1.4e-57 1
POMBASE|SPAC6F6.07c - symbol:rps13 "40S ribosomal protein... 577 5.3e-56 1
UNIPROTKB|F1NGB4 - symbol:RPS13 "40S ribosomal protein S1... 574 1.1e-55 1
GENEDB_PFALCIPARUM|PF13_0316 - symbol:PF13_0316 "40S ribo... 528 8.3e-51 1
UNIPROTKB|J3KMX5 - symbol:RPS13 "40S ribosomal protein S1... 474 4.4e-45 1
UNIPROTKB|P62279 - symbol:RPS13 "40S ribosomal protein S1... 474 4.4e-45 1
DICTYBASE|DDB_G0284533 - symbol:rps13 "40S ribosomal prot... 472 7.1e-45 1
UNIPROTKB|I3L7A9 - symbol:I3L7A9 "Uncharacterized protein... 372 2.8e-34 1
UNIPROTKB|E9PS50 - symbol:RPS13 "40S ribosomal protein S1... 231 2.5e-19 1
UNIPROTKB|F1LXY1 - symbol:F1LXY1 "Uncharacterized protein... 223 1.7e-18 1
RGD|1309022 - symbol:Bco2 "beta-carotene oxygenase 2" spe... 145 3.0e-07 1
RGD|1597300 - symbol:Tex12 "testis expressed 12" species:... 145 3.0e-07 1
>UNIPROTKB|Q6ITC7 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0033119 "negative regulation of RNA splicing" evidence=IEA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 GO:GO:0005730 GO:GO:0006412 GO:GO:0003729
GO:GO:0003735 GO:GO:0033119 GO:GO:0022627 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR CTD:6207 GeneTree:ENSGT00390000017491
HOVERGEN:HBG000938 OrthoDB:EOG4RJG2T EMBL:AY626809 IPI:IPI00574964
RefSeq:NP_001001783.1 UniGene:Gga.12646 ProteinModelPortal:Q6ITC7
SMR:Q6ITC7 STRING:Q6ITC7 PRIDE:Q6ITC7 Ensembl:ENSGALT00000009835
GeneID:414782 KEGG:gga:414782 InParanoid:Q6ITC7 NextBio:20818719
ArrayExpress:Q6ITC7 Uniprot:Q6ITC7
Length = 151
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 130/151 (86%), Positives = 145/151 (96%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 85/99 (85%), Positives = 95/99 (95%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+
Sbjct: 52 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDA 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRLARYYKTK VLPPNWKYES+TASA +
Sbjct: 112 KFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALV 150
>UNIPROTKB|Q56JX8 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362 GO:GO:0005730
GO:GO:0006412 GO:GO:0003729 GO:GO:0003735 GO:GO:0033119
GO:GO:0022627 KO:K02953 InterPro:IPR009068 SUPFAM:SSF47060
eggNOG:COG0184 HOGENOM:HOG000180723 HAMAP:MF_01343_A
InterPro:IPR023029 OMA:MARMHAR EMBL:AY911350 EMBL:BC102749
IPI:IPI00688727 RefSeq:NP_001020513.1 UniGene:Bt.58932
ProteinModelPortal:Q56JX8 SMR:Q56JX8 STRING:Q56JX8 PRIDE:Q56JX8
Ensembl:ENSBTAT00000055693 GeneID:535668 KEGG:bta:535668 CTD:6207
GeneTree:ENSGT00390000017491 HOVERGEN:HBG000938 InParanoid:Q56JX8
OrthoDB:EOG4RJG2T NextBio:20876805 Uniprot:Q56JX8
Length = 151
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 130/151 (86%), Positives = 145/151 (96%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 85/99 (85%), Positives = 95/99 (95%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+
Sbjct: 52 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDA 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRLARYYKTK VLPPNWKYES+TASA +
Sbjct: 112 KFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALV 150
>UNIPROTKB|P62277 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0006412 "translation" evidence=IC;TAS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0033119
"negative regulation of RNA splicing" evidence=IDA] [GO:0005840
"ribosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS]
[GO:0006415 "translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 Reactome:REACT_116125 EMBL:CH471064 GO:GO:0005730
GO:GO:0000184 GO:GO:0006413 GO:GO:0003729 GO:GO:0003735
GO:GO:0033119 GO:GO:0006415 GO:GO:0006414 GO:GO:0022627
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0019083 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR CTD:6207 HOVERGEN:HBG000938 OrthoDB:EOG4RJG2T
ChiTaRS:RPS13 EMBL:L01124 EMBL:X79239 EMBL:D88010 EMBL:AK312060
EMBL:BC000475 EMBL:BC006772 EMBL:BC029732 EMBL:BC066322
EMBL:BC100032 EMBL:L05090 IPI:IPI00221089 PIR:S34109
RefSeq:NP_001008.1 UniGene:Hs.446588 ProteinModelPortal:P62277
SMR:P62277 IntAct:P62277 MINT:MINT-4999984 STRING:P62277
PhosphoSite:P62277 DMDM:50403608 PaxDb:P62277 PeptideAtlas:P62277
PRIDE:P62277 DNASU:6207 Ensembl:ENST00000525634 GeneID:6207
KEGG:hsa:6207 UCSC:uc001mmp.3 GeneCards:GC11M017055 HGNC:HGNC:10386
HPA:HPA005985 MIM:180476 neXtProt:NX_P62277 PharmGKB:PA34785
InParanoid:P62277 PhylomeDB:P62277 GenomeRNAi:6207 NextBio:24107
ArrayExpress:P62277 Bgee:P62277 CleanEx:HS_RPS13
Genevestigator:P62277 GermOnline:ENSG00000110700 Uniprot:P62277
Length = 151
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 130/151 (86%), Positives = 145/151 (96%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 85/99 (85%), Positives = 95/99 (95%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+
Sbjct: 52 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDA 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRLARYYKTK VLPPNWKYES+TASA +
Sbjct: 112 KFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALV 150
>RGD|621027 [details] [associations]
symbol:Rps13 "ribosomal protein S13" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006412
"translation" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISO;IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=ISO] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 RGD:621027 GO:GO:0005730 GO:GO:0006412
GO:GO:0003729 GO:GO:0003735 GO:GO:0033119 GO:GO:0022627 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR CTD:6207 GeneTree:ENSGT00390000017491
HOVERGEN:HBG000938 OrthoDB:EOG4RJG2T EMBL:X53378 EMBL:BC084724
EMBL:L01123 IPI:IPI00366014 PIR:A35889 RefSeq:NP_569116.1
RefSeq:XP_001053043.1 RefSeq:XP_003753737.1 UniGene:Rn.103229
UniGene:Rn.198625 ProteinModelPortal:P62278 SMR:P62278
IntAct:P62278 STRING:P62278 PhosphoSite:P62278 PRIDE:P62278
Ensembl:ENSRNOT00000027803 Ensembl:ENSRNOT00000034694 GeneID:161477
GeneID:684988 KEGG:rno:161477 KEGG:rno:684988 UCSC:RGD:621027
InParanoid:P62278 NextBio:620983 Genevestigator:P62278
GermOnline:ENSRNOG00000020502 GermOnline:ENSRNOG00000028021
Uniprot:P62278
Length = 151
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 130/151 (86%), Positives = 145/151 (96%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 85/99 (85%), Positives = 95/99 (95%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+
Sbjct: 52 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDA 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRLARYYKTK VLPPNWKYES+TASA +
Sbjct: 112 KFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALV 150
>ZFIN|ZDB-GENE-040625-52 [details] [associations]
symbol:rps13 "ribosomal protein S13" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 ZFIN:ZDB-GENE-040625-52 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 KO:K02953 InterPro:IPR009068
SUPFAM:SSF47060 eggNOG:COG0184 HOGENOM:HOG000180723
HAMAP:MF_01343_A InterPro:IPR023029 OMA:MARMHAR CTD:6207
GeneTree:ENSGT00390000017491 HOVERGEN:HBG000938 OrthoDB:EOG4RJG2T
EMBL:BX927397 EMBL:BC072552 IPI:IPI00494738 RefSeq:NP_001002079.1
UniGene:Dr.31075 SMR:Q6IMW6 STRING:Q6IMW6
Ensembl:ENSDART00000052730 GeneID:415169 KEGG:dre:415169
InParanoid:Q6IMW6 NextBio:20818841 Uniprot:Q6IMW6
Length = 151
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 130/151 (86%), Positives = 144/151 (95%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ IFKL+KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLILVES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYKT+ VL PNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTRRVLAPNWKYESSTASALVA 151
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 84/99 (84%), Positives = 94/99 (94%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+
Sbjct: 52 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDA 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLILVESRIHRLARYYKT+ VL PNWKYES+TASA +
Sbjct: 112 KFRLILVESRIHRLARYYKTRRVLAPNWKYESSTASALV 150
>UNIPROTKB|F6Q5P0 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9823 "Sus
scrofa" [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 GO:GO:0005730 GO:GO:0006412
GO:GO:0003729 GO:GO:0003735 GO:GO:0033119 GO:GO:0022627
InterPro:IPR009068 SUPFAM:SSF47060 OMA:MARMHAR
GeneTree:ENSGT00390000017491 EMBL:CU657921
Ensembl:ENSSSCT00000014615 ArrayExpress:F6Q5P0 Uniprot:F6Q5P0
Length = 153
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 130/153 (84%), Positives = 145/153 (94%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPN--WLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSH 226
MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSH
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTKQWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSH 60
Query: 227 GVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILV 286
GVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+
Sbjct: 61 GVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILI 120
Query: 287 ESRIHRLARYYKTKAVLPPNWKYESATASALVA 319
ESRIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 ESRIHRLARYYKTKRVLPPNWKYESSTASALVA 153
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 85/99 (85%), Positives = 95/99 (95%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+
Sbjct: 54 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDA 113
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRLARYYKTK VLPPNWKYES+TASA +
Sbjct: 114 KFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALV 152
>UNIPROTKB|E1BGR6 [details] [associations]
symbol:E1BGR6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009068 SUPFAM:SSF47060
HAMAP:MF_01343_A InterPro:IPR023029 GeneTree:ENSGT00390000017491
EMBL:DAAA02035416 IPI:IPI00688404 Ensembl:ENSBTAT00000005143
OMA:WASSETH NextBio:20926527 Uniprot:E1BGR6
Length = 151
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 127/150 (84%), Positives = 142/150 (94%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGK +S+SALPYRRSVP WLKLT +DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKDLSQSALPYRRSVPTWLKLTCDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALV 318
RIHRLARYYKTK VLPPNWKYES+TASALV
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALV 150
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 85/100 (85%), Positives = 96/100 (96%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+
Sbjct: 52 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDA 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFIL 136
KFRLIL+ESRIHRLARYYKTK VLPPNWKYES+TASA ++
Sbjct: 112 KFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVV 151
>FB|FBgn0010265 [details] [associations]
symbol:RpS13 "Ribosomal protein S13" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;IDA;NAS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS;NAS] [GO:0006412 "translation"
evidence=ISS;NAS] [GO:0005840 "ribosome" evidence=IDA;NAS]
[GO:0005811 "lipid particle" evidence=IDA] [GO:0000022 "mitotic
spindle elongation" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362 EMBL:AE014134
GO:GO:0005811 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000022 KO:K02953 InterPro:IPR009068 SUPFAM:SSF47060
eggNOG:COG0184 HAMAP:MF_01343_A InterPro:IPR023029 OMA:MARMHAR
CTD:6207 GeneTree:ENSGT00390000017491 EMBL:Z19052 EMBL:X91853
EMBL:X91854 EMBL:AY058536 PIR:S70391 RefSeq:NP_001033885.1
RefSeq:NP_476938.1 UniGene:Dm.3535 ProteinModelPortal:Q03334
SMR:Q03334 DIP:DIP-17858N IntAct:Q03334 MINT:MINT-1001577
STRING:Q03334 PaxDb:Q03334 PRIDE:Q03334 EnsemblMetazoa:FBtr0079724
EnsemblMetazoa:FBtr0100541 GeneID:34149 KEGG:dme:Dmel_CG13389
FlyBase:FBgn0010265 InParanoid:Q03334 OrthoDB:EOG4N02X8
PhylomeDB:Q03334 ChiTaRS:RPS13 GenomeRNAi:34149 NextBio:787111
Bgee:Q03334 GermOnline:CG13389 Uniprot:Q03334
Length = 151
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 126/151 (83%), Positives = 143/151 (94%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGKGIS+SALPYRR+VP+WLKL ++DVK+ I KL KKGLTPS+IG+ILRDSHGV
Sbjct: 1 MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQVRFV+GNKILRIMK++GL P++PEDLY +IKKAVAIRKHLER+RKDKD KFRLILVES
Sbjct: 61 AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 84/99 (84%), Positives = 95/99 (95%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
+ILRDSHGVAQVRFV+GNKILRIMK++GL P++PEDLY +IKKAVAIRKHLER+RKDKD
Sbjct: 52 IILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDG 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLILVESRIHRLARYYKTK+VLPPNWKYES+TASA +
Sbjct: 112 KFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV 150
>WB|WBGene00004482 [details] [associations]
symbol:rps-13 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] InterPro:IPR000589
InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362
GO:GO:0009792 GO:GO:0040007 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 KO:K02953
EMBL:FO080367 InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A OMA:MARMHAR
GeneTree:ENSGT00390000017491 PIR:H88480 RefSeq:NP_498393.1
ProteinModelPortal:P51404 SMR:P51404 DIP:DIP-25602N IntAct:P51404
MINT:MINT-1063512 STRING:P51404 PaxDb:P51404
EnsemblMetazoa:C16A3.9.1 EnsemblMetazoa:C16A3.9.2 GeneID:175901
KEGG:cel:CELE_C16A3.9 UCSC:C16A3.9.1 CTD:175901 WormBase:C16A3.9
InParanoid:P51404 NextBio:890222 Uniprot:P51404
Length = 151
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 115/151 (76%), Positives = 135/151 (89%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGKG++KSA+PYRRSVP+W K+T+E+V+D I K++KKGL PSQIGVILRDSHGV
Sbjct: 1 MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
QVR ++GNKI RI+K+ G+AP LPEDLY L+KKAVAIRKHLERSRKD DSK+RLILVES
Sbjct: 61 GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYKTK LPP WKYES TA++LV+
Sbjct: 121 RIHRLARYYKTKRQLPPTWKYESGTAASLVS 151
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 77/99 (77%), Positives = 87/99 (87%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHGV QVR ++GNKI RI+K+ G+AP LPEDLY L+KKAVAIRKHLERSRKD DS
Sbjct: 52 VILRDSHGVGQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDS 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
K+RLILVESRIHRLARYYKTK LPP WKYES TA++ +
Sbjct: 112 KYRLILVESRIHRLARYYKTKRQLPPTWKYESGTAASLV 150
>TAIR|locus:2126936 [details] [associations]
symbol:RPS13A "ribosomal protein S13A" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS;TAS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000911 "cytokinesis by cell plate formation"
evidence=IMP] [GO:0009965 "leaf morphogenesis" evidence=IMP]
[GO:0010090 "trichome morphogenesis" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS;IDA;NAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA] [GO:0005794
"Golgi apparatus" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0009664 "plant-type cell wall organization"
evidence=RCA] [GO:0042545 "cell wall modification" evidence=RCA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 EnsemblPlants:AT4G00100.1 GO:GO:0005783
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0010090
GO:GO:0016020 GO:GO:0006412 GO:GO:0003735 GO:GO:0009965
EMBL:AL161471 GO:GO:0022627 EMBL:AF069299 GO:GO:0000911 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 PIR:T47888 eggNOG:COG0184
HOGENOM:HOG000180723 ProtClustDB:CLSN2689242 HAMAP:MF_01343_A
InterPro:IPR023029 EMBL:AB031739 EMBL:AF370471 EMBL:AY057544
EMBL:BT006543 EMBL:AY088038 EMBL:Z29915 IPI:IPI00520550 PIR:T01338
RefSeq:NP_567151.1 UniGene:At.24982 ProteinModelPortal:P59224
SMR:P59224 STRING:P59224 PaxDb:P59224 PRIDE:P59224 GeneID:828167
KEGG:ath:AT4G00100 GeneFarm:465 TAIR:At4g00100 InParanoid:P59224
OMA:MARMHAR PhylomeDB:P59224 Genevestigator:P59224
GermOnline:AT4G00100 Uniprot:P59224
Length = 151
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 118/151 (78%), Positives = 131/151 (86%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH+ GKGIS SALPY+RS P+WLK TS+DV + I K +KKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
QV+ V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYK LPP WKYES TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 78/99 (78%), Positives = 86/99 (86%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHG+ QV+ V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDS
Sbjct: 52 VILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDS 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLILVESRIHRLARYYK LPP WKYES TAS +
Sbjct: 112 KFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 150
>UNIPROTKB|G4NCQ6 [details] [associations]
symbol:MGG_00349 "40S ribosomal protein S13" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 EMBL:CM001235 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0043581 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 HAMAP:MF_01343_A
InterPro:IPR023029 RefSeq:XP_003718734.1 ProteinModelPortal:G4NCQ6
SMR:G4NCQ6 EnsemblFungi:MGG_00349T0 GeneID:2675125
KEGG:mgr:MGG_00349 Uniprot:G4NCQ6
Length = 151
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 113/151 (74%), Positives = 132/151 (87%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH+ GKGIS SA+PY R+ P WLK T + V + I KL++KG TPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSNGKGISASAIPYSRNPPAWLKTTPDQVVEQICKLARKGATPSQIGVVLRDSHGI 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQV+ V+GNKILRI+K+ GLAP++PEDLY LIKKAV++RKHLER+RKDKDSKFRLIL+ES
Sbjct: 61 AQVKIVTGNKILRILKSNGLAPDIPEDLYMLIKKAVSVRKHLERNRKDKDSKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYKT VLPP WKYESATAS LVA
Sbjct: 121 RIHRLARYYKTVGVLPPTWKYESATASTLVA 151
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 78/99 (78%), Positives = 91/99 (91%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
V+LRDSHG+AQV+ V+GNKILRI+K+ GLAP++PEDLY LIKKAV++RKHLER+RKDKDS
Sbjct: 52 VVLRDSHGIAQVKIVTGNKILRILKSNGLAPDIPEDLYMLIKKAVSVRKHLERNRKDKDS 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRLARYYKT VLPP WKYESATAS +
Sbjct: 112 KFRLILIESRIHRLARYYKTVGVLPPTWKYESATASTLV 150
>SGD|S000002471 [details] [associations]
symbol:RPS13 "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0003735
"structural constituent of ribosome" evidence=IEA;IDA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0070181 "SSU rRNA
binding" evidence=IDA] [GO:0000462 "maturation of SSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0002181 "cytoplasmic translation" evidence=IC]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362 SGD:S000002471
EMBL:BK006938 GO:GO:0003735 GO:GO:0002181 EMBL:X84162 EMBL:Z49209
GO:GO:0030686 GO:GO:0070181 GO:GO:0000462 RefSeq:NP_010353.3
GeneID:851640 KEGG:sce:YDR068W PDB:1S1H PDBsum:1S1H GO:GO:0022627
PDB:3IZB PDB:3O2Z PDB:3O30 PDB:3U5C PDB:3U5G PDBsum:3IZB
PDBsum:3O2Z PDBsum:3O30 PDBsum:3U5C PDBsum:3U5G RefSeq:NP_010349.3
GeneID:851636 KEGG:sce:YDR064W KO:K02953 InterPro:IPR009068
SUPFAM:SSF47060 PDB:1K5X PDBsum:1K5X eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR GeneTree:ENSGT00390000017491 OrthoDB:EOG4QZBWD
EMBL:Z74360 PIR:S54048 ProteinModelPortal:P05756 SMR:P05756
IntAct:P05756 MINT:MINT-1324638 STRING:P05756 PaxDb:P05756
PeptideAtlas:P05756 PRIDE:P05756 EnsemblFungi:YDR064W
EvolutionaryTrace:P05756 NextBio:969194 Genevestigator:P05756
GermOnline:YDR064W Uniprot:P05756
Length = 151
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 111/150 (74%), Positives = 132/150 (88%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH+ GKGIS SA+PY R+ P W KL+SE V + I K ++KGLTPSQIGV+LRD+HGV
Sbjct: 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
Q R ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61 TQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALV 318
RIHRLARYY+T AVLPPNWKYESATASALV
Sbjct: 121 RIHRLARYYRTVAVLPPNWKYESATASALV 150
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 76/99 (76%), Positives = 91/99 (91%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
V+LRD+HGV Q R ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+
Sbjct: 52 VLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDA 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRLARYY+T AVLPPNWKYESATASA +
Sbjct: 112 KFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALV 150
>TAIR|locus:2101901 [details] [associations]
symbol:AT3G60770 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR000589
InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362
EnsemblPlants:AT3G60770.1 GO:GO:0005618 GO:GO:0009507 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0006412 GO:GO:0003735
EMBL:AL162295 GO:GO:0022627 KO:K02953 InterPro:IPR009068
SUPFAM:SSF47060 EMBL:AF380636 EMBL:AY056088 EMBL:AY090366
EMBL:AY052731 EMBL:AF378861 EMBL:Z17784 IPI:IPI00518946 PIR:T47888
RefSeq:NP_567104.1 UniGene:At.23276 UniGene:At.73139
ProteinModelPortal:P59223 SMR:P59223 STRING:P59223 PaxDb:P59223
PRIDE:P59223 GeneID:825248 KEGG:ath:AT3G60770 GeneFarm:471
TAIR:At3g60770 eggNOG:COG0184 HOGENOM:HOG000180723
InParanoid:P59223 OMA:XVILRDS PhylomeDB:P59223
ProtClustDB:CLSN2689242 Genevestigator:P59223 GermOnline:AT3G60770
HAMAP:MF_01343_A InterPro:IPR023029 Uniprot:P59223
Length = 151
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 117/151 (77%), Positives = 130/151 (86%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH+ GKGIS SALPY+RS P+WLK T +DV + I K +KKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
QV+ V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYYK LPP WKYES TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 78/99 (78%), Positives = 86/99 (86%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHG+ QV+ V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDS
Sbjct: 52 VILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDS 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLILVESRIHRLARYYK LPP WKYES TAS +
Sbjct: 112 KFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 150
>ASPGD|ASPL0000002296 [details] [associations]
symbol:AN6679 species:162425 "Emericella nidulans"
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=IEA] [GO:0070181 "SSU rRNA
binding" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 GO:GO:0006412 GO:GO:0005840 EMBL:BN001301
GO:GO:0003735 InterPro:IPR009068 SUPFAM:SSF47060 HAMAP:MF_01343_A
InterPro:IPR023029 OMA:MARMHAR EnsemblFungi:CADANIAT00007464
Uniprot:C8V1L4
Length = 151
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 112/151 (74%), Positives = 132/151 (87%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGR+H+ GKGI+ SALPY R+ W+K+T E V DHI KL++KG +PSQIGV+LRDSHGV
Sbjct: 1 MGRLHSKGKGIASSALPYSRTPAPWVKITPEQVVDHICKLARKGASPSQIGVVLRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQV+ V+GNKILRI+K+ GLAP +PEDLY LIKKAVA+RKHLER+RKDKDSKFRLIL+ES
Sbjct: 61 AQVKTVTGNKILRILKSNGLAPEIPEDLYHLIKKAVAVRKHLERNRKDKDSKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRL+RYYKT VLPP WKYESATAS +VA
Sbjct: 121 RIHRLSRYYKTVGVLPPTWKYESATASTMVA 151
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 79/99 (79%), Positives = 90/99 (90%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
V+LRDSHGVAQV+ V+GNKILRI+K+ GLAP +PEDLY LIKKAVA+RKHLER+RKDKDS
Sbjct: 52 VVLRDSHGVAQVKTVTGNKILRILKSNGLAPEIPEDLYHLIKKAVAVRKHLERNRKDKDS 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRL+RYYKT VLPP WKYESATAS +
Sbjct: 112 KFRLILIESRIHRLSRYYKTVGVLPPTWKYESATASTMV 150
>POMBASE|SPAC6F6.07c [details] [associations]
symbol:rps13 "40S ribosomal protein S13" species:4896
"Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic translation"
evidence=ISO] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISO]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 PomBase:SPAC6F6.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181 GO:GO:0022627
KO:K02953 InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR EMBL:X67030 PIR:S26296 RefSeq:NP_593900.1
ProteinModelPortal:P28189 SMR:P28189 IntAct:P28189
MINT:MINT-4688056 STRING:P28189 PRIDE:P28189
EnsemblFungi:SPAC6F6.07c.1 GeneID:2542108 KEGG:spo:SPAC6F6.07c
OrthoDB:EOG4QZBWD NextBio:20803180 Uniprot:P28189
Length = 151
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 110/151 (72%), Positives = 127/151 (84%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH+ GKGI+ SALPY RS P W K ++ V + I K SKKG++PSQIGV LRDSHG+
Sbjct: 1 MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
QVRF++G KI+RI+KA GLAP LPEDLY LIKKAV++RKHLER+RKDKDSKFRLIL+ES
Sbjct: 61 PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRLARYY+ LPP WKYESATASALVA
Sbjct: 121 RIHRLARYYRKVGALPPTWKYESATASALVA 151
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 76/99 (76%), Positives = 87/99 (87%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
V LRDSHG+ QVRF++G KI+RI+KA GLAP LPEDLY LIKKAV++RKHLER+RKDKDS
Sbjct: 52 VTLRDSHGIPQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDS 111
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRLARYY+ LPP WKYESATASA +
Sbjct: 112 KFRLILIESRIHRLARYYRKVGALPPTWKYESATASALV 150
>UNIPROTKB|F1NGB4 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0033119 "negative regulation of RNA splicing" evidence=IEA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 GO:GO:0005730 GO:GO:0006412 GO:GO:0003729
GO:GO:0003735 GO:GO:0033119 GO:GO:0022627 InterPro:IPR009068
SUPFAM:SSF47060 GeneTree:ENSGT00390000017491 EMBL:AADN02030436
EMBL:AADN02030437 EMBL:AADN02030438 IPI:IPI00577443
Ensembl:ENSGALT00000017164 Ensembl:ENSGALT00000039567
Uniprot:F1NGB4
Length = 127
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 110/127 (86%), Positives = 123/127 (96%)
Query: 193 WLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNL 252
WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGVAQVRFV+GNKILRI+K+ GLAP+L
Sbjct: 1 WLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDL 60
Query: 253 PEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESA 312
PEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ESRIHRLARYYKTK VLPPNWKYES+
Sbjct: 61 PEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESS 120
Query: 313 TASALVA 319
TASALVA
Sbjct: 121 TASALVA 127
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 85/99 (85%), Positives = 95/99 (95%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+
Sbjct: 28 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDA 87
Query: 97 KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
KFRLIL+ESRIHRLARYYKTK VLPPNWKYES+TASA +
Sbjct: 88 KFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALV 126
>GENEDB_PFALCIPARUM|PF13_0316 [details] [associations]
symbol:PF13_0316 "40S ribosomal protein S13"
species:5833 "Plasmodium falciparum" [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISS] InterPro:IPR000589
InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AL844509 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 HOGENOM:HOG000180723
HAMAP:MF_01343_A InterPro:IPR023029 OMA:MARMHAR
ProtClustDB:PTZ00072 RefSeq:XP_001350306.1
ProteinModelPortal:Q8IDB0 SMR:Q8IDB0 PRIDE:Q8IDB0
EnsemblProtists:PF13_0316:mRNA GeneID:814278 KEGG:pfa:PF13_0316
EuPathDB:PlasmoDB:PF3D7_1358800 Uniprot:Q8IDB0
Length = 151
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 97/151 (64%), Positives = 125/151 (82%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRM+ GKGIS S LPY+R P+WLK +++D I KL+KKG TPSQIG LRD++G+
Sbjct: 1 MGRMYGKGKGISSSTLPYKRKQPSWLKQKPSEIEDAIIKLAKKGQTPSQIGATLRDNYGI 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
QV+ V+GNKILRI++A G+A +PEDLY LIKKAV++RKHLE+++KDKD KFRLIL ES
Sbjct: 61 PQVKSVTGNKILRILRAQGIATTIPEDLYFLIKKAVSMRKHLEKNKKDKDCKFRLILTES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
+IHR++RYYK K +LP NWKY+S+TASAL+A
Sbjct: 121 KIHRISRYYKRKKLLPSNWKYQSSTASALIA 151
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 65/97 (67%), Positives = 85/97 (87%)
Query: 39 LRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKF 98
LRD++G+ QV+ V+GNKILRI++A G+A +PEDLY LIKKAV++RKHLE+++KDKD KF
Sbjct: 54 LRDNYGIPQVKSVTGNKILRILRAQGIATTIPEDLYFLIKKAVSMRKHLEKNKKDKDCKF 113
Query: 99 RLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
RLIL ES+IHR++RYYK K +LP NWKY+S+TASA I
Sbjct: 114 RLILTESKIHRISRYYKRKKLLPSNWKYQSSTASALI 150
>UNIPROTKB|J3KMX5 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR009068 SUPFAM:SSF47060 EMBL:AC116533 ChiTaRS:RPS13
HGNC:HGNC:10386 ProteinModelPortal:J3KMX5 Ensembl:ENST00000228140
Uniprot:J3KMX5
Length = 148
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 90/107 (84%), Positives = 102/107 (95%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRK 275
AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RK
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 48/56 (85%), Positives = 54/56 (96%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRK 92
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RK
Sbjct: 52 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
>UNIPROTKB|P62279 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9823 "Sus
scrofa" [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 GO:GO:0005730 GO:GO:0006412
GO:GO:0003729 GO:GO:0003735 GO:GO:0033119 GO:GO:0022627
InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A HOVERGEN:HBG000938
OrthoDB:EOG4RJG2T EMBL:F14525 ProteinModelPortal:P62279 SMR:P62279
STRING:P62279 ArrayExpress:P62279 Uniprot:P62279
Length = 107
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 90/107 (84%), Positives = 102/107 (95%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRK 275
AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RK
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 48/56 (85%), Positives = 54/56 (96%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRK 92
VILRDSHGVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RK
Sbjct: 52 VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
>DICTYBASE|DDB_G0284533 [details] [associations]
symbol:rps13 "40S ribosomal protein S13"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 dictyBase:DDB_G0284533 GenomeReviews:CM000153_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AAFI02000066
KO:K02953 InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HAMAP:MF_01343_A OMA:MARMHAR RefSeq:XP_638554.1
ProteinModelPortal:Q54PH8 SMR:Q54PH8 STRING:Q54PH8
EnsemblProtists:DDB0230055 GeneID:8624647 KEGG:ddi:DDB_G0284533
ProtClustDB:PTZ00072 Uniprot:Q54PH8
Length = 151
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 96/151 (63%), Positives = 113/151 (74%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
MGRMH+ GKGIS S+LPY R W K T+ +V + + KL+K+G TPS+IG LRDS GV
Sbjct: 1 MGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
AQV+ V+G+KILRI+K GLAP +PEDLY LIKKAV I KHL+R+RKD D KF L LVES
Sbjct: 61 AQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
RIHRL R Y+ L PNWKYES AS LVA
Sbjct: 121 RIHRLTRPYRKNGTLAPNWKYESNNASTLVA 151
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 65/97 (67%), Positives = 74/97 (76%)
Query: 39 LRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKF 98
LRDS GVAQV+ V+G+KILRI+K GLAP +PEDLY LIKKAV I KHL+R+RKD D KF
Sbjct: 54 LRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKF 113
Query: 99 RLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
L LVESRIHRL R Y+ L PNWKYES AS +
Sbjct: 114 HLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLV 150
>UNIPROTKB|I3L7A9 [details] [associations]
symbol:I3L7A9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR012606 Pfam:PF08069
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GeneTree:ENSGT00390000017491 EMBL:CU481337
Ensembl:ENSSSCT00000029071 OMA:PIESRIH Uniprot:I3L7A9
Length = 107
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 73/105 (69%), Positives = 89/105 (84%)
Query: 175 PGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFV 234
PGKG+S+SALPYR SVP WLKL S DVK+ I+KL+KK LTPSQ+G+ILRDSHGVAQV FV
Sbjct: 3 PGKGLSQSALPYRHSVPTWLKLMSGDVKEQIYKLAKKDLTPSQMGMILRDSHGVAQVGFV 62
Query: 235 SGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 279
+G KILRI+K+ GLAP+LPEDL+ L KK +K+LER+RK KD+
Sbjct: 63 TGKKILRILKSQGLAPDLPEDLHHLKKKKERKKKYLERNRKAKDA 107
Score = 197 (74.4 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 44/79 (55%), Positives = 56/79 (70%)
Query: 20 IKSGFYCNLKTDIV--LFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLI 77
+K Y K D+ +ILRDSHGVAQV FV+G KILRI+K+ GLAP+LPEDL+ L
Sbjct: 29 VKEQIYKLAKKDLTPSQMGMILRDSHGVAQVGFVTGKKILRILKSQGLAPDLPEDLHHLK 88
Query: 78 KKAVAIRKHLERSRKDKDS 96
KK +K+LER+RK KD+
Sbjct: 89 KKKERKKKYLERNRKAKDA 107
>UNIPROTKB|E9PS50 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR012606 Pfam:PF08069
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AC116533
ChiTaRS:RPS13 HGNC:HGNC:10386 IPI:IPI00980940
ProteinModelPortal:E9PS50 SMR:E9PS50 Ensembl:ENST00000533969
ArrayExpress:E9PS50 Bgee:E9PS50 Uniprot:E9PS50
Length = 116
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 43/57 (75%), Positives = 51/57 (89%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDS 225
MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQI ++L S
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIVLLLSPS 57
Score = 151 (58.2 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 204 HIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLA 249
H+ S + S+IGVILRDSHGVAQVRFV+GNKILRI+K+ GLA
Sbjct: 71 HLLDSSDSPASASRIGVILRDSHGVAQVRFVTGNKILRILKSKGLA 116
Score = 129 (50.5 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 26/30 (86%), Positives = 29/30 (96%)
Query: 37 VILRDSHGVAQVRFVSGNKILRIMKAMGLA 66
VILRDSHGVAQVRFV+GNKILRI+K+ GLA
Sbjct: 87 VILRDSHGVAQVRFVTGNKILRILKSKGLA 116
>UNIPROTKB|F1LXY1 [details] [associations]
symbol:F1LXY1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR012606
Pfam:PF08069 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
IPI:IPI00947710 Ensembl:ENSRNOT00000066599 Uniprot:F1LXY1
Length = 72
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 42/65 (64%), Positives = 51/65 (78%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
+G H P KG+ + ALPY S+P WL+L SED+K+ I+KL+KKGLTPSQIG ILRDSHGV
Sbjct: 1 VGCTHAPRKGLFRLALPYCHSMPTWLRLMSEDLKEQIYKLAKKGLTPSQIGEILRDSHGV 60
Query: 229 AQVRF 233
QV F
Sbjct: 61 TQVHF 65
>RGD|1309022 [details] [associations]
symbol:Bco2 "beta-carotene oxygenase 2" species:10116 "Rattus
norvegicus" [GO:0005739 "mitochondrion" evidence=ISO] [GO:0016116
"carotenoid metabolic process" evidence=ISO] [GO:0016119 "carotene
metabolic process" evidence=ISO] [GO:0016121 "carotene catabolic
process" evidence=ISO] [GO:0016702 "oxidoreductase activity, acting
on single donors with incorporation of molecular oxygen,
incorporation of two atoms of oxygen" evidence=ISO] [GO:0051881
"regulation of mitochondrial membrane potential" evidence=ISO]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:2000377
"regulation of reactive oxygen species metabolic process"
evidence=ISO] InterPro:IPR012606 Pfam:PF08069 RGD:1309022
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 HOVERGEN:HBG050679
InterPro:IPR004294 PANTHER:PTHR10543 Pfam:PF03055 IPI:IPI00382241
EMBL:AY325176 UniGene:Rn.162999 ProteinModelPortal:Q7TP70
PRIDE:Q7TP70 UCSC:RGD:1309022 Genevestigator:Q7TP70 Uniprot:Q7TP70
Length = 481
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 28/40 (70%), Positives = 33/40 (82%)
Query: 163 NKKSLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVK 202
N+ S +GRMH PGKG+S+SALPYRRSV WLKL S+DVK
Sbjct: 438 NQTSAIVGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
>RGD|1597300 [details] [associations]
symbol:Tex12 "testis expressed 12" species:10116 "Rattus
norvegicus" [GO:0000795 "synaptonemal complex" evidence=ISO]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR012606 Pfam:PF08069 RGD:1597300
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GeneTree:ENSGT00500000044783 InterPro:IPR004294 PANTHER:PTHR10543
Pfam:PF03055 IPI:IPI00382241 Ensembl:ENSRNOT00000059191
UCSC:RGD:1597300 ArrayExpress:F1LMB4 Uniprot:F1LMB4
Length = 481
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 28/40 (70%), Positives = 33/40 (82%)
Query: 163 NKKSLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVK 202
N+ S +GRMH PGKG+S+SALPYRRSV WLKL S+DVK
Sbjct: 438 NQTSAIVGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 319 308 0.00078 116 3 11 22 0.49 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 578 (61 KB)
Total size of DFA: 194 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 25.02u 0.09s 25.11t Elapsed: 00:00:10
Total cpu time: 25.02u 0.09s 25.11t Elapsed: 00:00:12
Start: Thu Aug 15 12:16:16 2013 End: Thu Aug 15 12:16:28 2013