BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy775
(1460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 246 bits (628), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 144/380 (37%), Positives = 205/380 (53%), Gaps = 26/380 (6%)
Query: 143 SVHIDPKIFDSYYNGCCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKALQIL 202
S ++ + D YYN N WP FH D F W Y +VN ADK + LQ
Sbjct: 65 SFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQ-- 122
Query: 203 AQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWS 262
++WIHDYHL+ A+ +R ++ + ++GFFLHIPFP +IF P
Sbjct: 123 --------DDDIIWIHDYHLLPFAHELR----KRGVNNRIGFFLHIPFPTPEIFNALPTY 170
Query: 263 DEILQGMLGCDMVGFHIEDYCLNFVDCCQR--RLGCRVDRKNLLVEHGGRTVRIRPLPIA 320
D +L+ + D++GF E+ L F+DC R+ R + + G+ R PI
Sbjct: 171 DTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIG 227
Query: 321 IPYERFVQLAQAA--PRVIDTKQKI-----VLGVDRLDYTKGLVHRLKAFETLLEKHPEH 373
I + + A P++ K ++ + V+RLDY+KGL R A+E LLEK+P+H
Sbjct: 228 IEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH 287
Query: 374 LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELAS 433
K+ QIA SR DV+ YQD++ +++ GRING++ W+P+ Y+ + L
Sbjct: 288 HGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMK 347
Query: 434 FYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEID 493
+R + V LVTPLRDGMNLVAKE+VA Q PGVL++S FAGA ++ ALI NPY+ D
Sbjct: 348 IFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRD 407
Query: 494 AAAEVIHRALTMPEDERTLR 513
A + RALTM ER R
Sbjct: 408 EVAAALDRALTMSLAERISR 427
Score = 202 bits (515), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 176/334 (52%), Gaps = 49/334 (14%)
Query: 569 LVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCD 628
++WIHDYHL+ A+ +R ++ + ++GFFLHIPFP +IF P D +L+ + D
Sbjct: 126 IIWIHDYHLLPFAHELR----KRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYD 181
Query: 629 MVGFHIEDYCLNFVDCCQR--RLGCRVDRKNLLVEHGGRTVRIRPLPIAI-PYERFVQLA 685
++GF E+ L F+DC R+ R + + G+ R PI I P E Q A
Sbjct: 182 LLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAA 238
Query: 686 QAAPRVIDTKQKIVLGVDRLDYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVL 745
P +L K +++++N +
Sbjct: 239 GPLP-------------PKLAQLKAELKNVQN--------------------------IF 259
Query: 746 GVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVG 805
V+RLDY+KGL R A+E LLEK+P+H K+ QIA SR DV+ YQD++ +++ G
Sbjct: 260 SVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAG 319
Query: 806 RINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEP 865
RING++ W+P+ Y+ + L +R + V LVTPLRDGMNLVAKE+VA Q
Sbjct: 320 RINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPAN 379
Query: 866 PGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVI 899
PGVL++S FAGA ++ ALI NPY+ D A +
Sbjct: 380 PGVLVLSQFAGAANELTSALIVNPYDRDEVAAAL 413
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 1075 KLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQR--RLGCRV 1132
++GFFLHIPFP +IF P D +L+ + D++GF E+ L F+DC R+ R
Sbjct: 149 RIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRS 208
Query: 1133 DRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQA--APRVIDTKQKI-----VLGVDRLD 1185
+ + G+ R PI I + + A P++ K ++ + V+RLD
Sbjct: 209 AKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLD 265
Query: 1186 YTKGLVHR 1193
Y+KGL R
Sbjct: 266 YSKGLPER 273
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 1004 VLPTTLIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGKASLGL 1055
+LP ++ + ++GFFLHIPFP +IF P D +L+ + LG
Sbjct: 134 LLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGF 185
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 246 bits (627), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 144/380 (37%), Positives = 205/380 (53%), Gaps = 26/380 (6%)
Query: 143 SVHIDPKIFDSYYNGCCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKALQIL 202
S ++ + D YYN N WP FH D F W Y +VN ADK + LQ
Sbjct: 65 SFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQ-- 122
Query: 203 AQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWS 262
++WIHDYHL+ A+ +R ++ + ++GFFLHIPFP +IF P
Sbjct: 123 --------DDDIIWIHDYHLLPFAHELR----KRGVNNRIGFFLHIPFPTPEIFNALPTY 170
Query: 263 DEILQGMLGCDMVGFHIEDYCLNFVDCCQR--RLGCRVDRKNLLVEHGGRTVRIRPLPIA 320
D +L+ + D++GF E+ L F+DC R+ R + + G+ R PI
Sbjct: 171 DTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIG 227
Query: 321 IPYERFVQLAQAA--PRVIDTKQKI-----VLGVDRLDYTKGLVHRLKAFETLLEKHPEH 373
I + + A P++ K ++ + V+RLDY+KGL R A+E LLEK+P+H
Sbjct: 228 IEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH 287
Query: 374 LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELAS 433
K+ QIA SR DV+ YQD++ +++ GRING++ W+P+ Y+ + L
Sbjct: 288 HGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMK 347
Query: 434 FYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEID 493
+R + V LVTPLRDGMNLVAKE+VA Q PGVL++S FAGA ++ ALI NPY+ D
Sbjct: 348 IFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRD 407
Query: 494 AAAEVIHRALTMPEDERTLR 513
A + RALTM ER R
Sbjct: 408 EVAAALDRALTMSLAERISR 427
Score = 202 bits (515), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 176/334 (52%), Gaps = 49/334 (14%)
Query: 569 LVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCD 628
++WIHDYHL+ A+ +R ++ + ++GFFLHIPFP +IF P D +L+ + D
Sbjct: 126 IIWIHDYHLLPFAHELR----KRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYD 181
Query: 629 MVGFHIEDYCLNFVDCCQR--RLGCRVDRKNLLVEHGGRTVRIRPLPIAI-PYERFVQLA 685
++GF E+ L F+DC R+ R + + G+ R PI I P E Q A
Sbjct: 182 LLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAA 238
Query: 686 QAAPRVIDTKQKIVLGVDRLDYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVL 745
P +L K +++++N +
Sbjct: 239 GPLP-------------PKLAQLKAELKNVQN--------------------------IF 259
Query: 746 GVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVG 805
V+RLDY+KGL R A+E LLEK+P+H K+ QIA SR DV+ YQD++ +++ G
Sbjct: 260 SVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAG 319
Query: 806 RINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEP 865
RING++ W+P+ Y+ + L +R + V LVTPLRDGMNLVAKE+VA Q
Sbjct: 320 RINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPAN 379
Query: 866 PGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVI 899
PGVL++S FAGA ++ ALI NPY+ D A +
Sbjct: 380 PGVLVLSQFAGAANELTSALIVNPYDRDEVAAAL 413
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 1075 KLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQR--RLGCRV 1132
++GFFLHIPFP +IF P D +L+ + D++GF E+ L F+DC R+ R
Sbjct: 149 RIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRS 208
Query: 1133 DRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQA--APRVIDTKQKI-----VLGVDRLD 1185
+ + G+ R PI I + + A P++ K ++ + V+RLD
Sbjct: 209 AKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLD 265
Query: 1186 YTKGLVHR 1193
Y+KGL R
Sbjct: 266 YSKGLPER 273
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 1004 VLPTTLIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGKASLGL 1055
+LP ++ + ++GFFLHIPFP +IF P D +L+ + LG
Sbjct: 134 LLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGF 185
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 241 bits (614), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/380 (37%), Positives = 203/380 (53%), Gaps = 26/380 (6%)
Query: 143 SVHIDPKIFDSYYNGCCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKALQIL 202
S ++ + D YYN N WP FH D F W Y +VN ADK + LQ
Sbjct: 64 SFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQ-- 121
Query: 203 AQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWS 262
++WIHDYHL+ A+ +R ++ + ++GFFLHIPFP +IF P
Sbjct: 122 --------DDDIIWIHDYHLLPFAHELR----KRGVNNRIGFFLHIPFPTPEIFNALPTY 169
Query: 263 DEILQGMLGCDMVGFHIEDYCLNFVDCCQR--RLGCRVDRKNLLVEHGGRTVRIRPLPIA 320
D +L+ + D++GF E+ L F+DC R+ R + + G+ R PI
Sbjct: 170 DTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIG 226
Query: 321 IPYERFVQLAQAA--PRVIDTKQKI-----VLGVDRLDYTKGLVHRLKAFETLLEKHPEH 373
I + + A P++ K ++ + V+RLDY+KGL R A+E LLEK+P+H
Sbjct: 227 IEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH 286
Query: 374 LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELAS 433
K+ QIA SR DV+ YQD++ +++ GRING++ W+P+ Y+ + L
Sbjct: 287 HGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLXK 346
Query: 434 FYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEID 493
+R + V LVTPLRDG NLVAKE+VA Q PGVL++S FAGA ++ ALI NPY+ D
Sbjct: 347 IFRYSDVGLVTPLRDGXNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRD 406
Query: 494 AAAEVIHRALTMPEDERTLR 513
A + RALT ER R
Sbjct: 407 EVAAALDRALTXSLAERISR 426
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 175/334 (52%), Gaps = 49/334 (14%)
Query: 569 LVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCD 628
++WIHDYHL+ A+ +R ++ + ++GFFLHIPFP +IF P D +L+ + D
Sbjct: 125 IIWIHDYHLLPFAHELR----KRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYD 180
Query: 629 MVGFHIEDYCLNFVDCCQR--RLGCRVDRKNLLVEHGGRTVRIRPLPIAI-PYERFVQLA 685
++GF E+ L F+DC R+ R + + G+ R PI I P E Q A
Sbjct: 181 LLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA---WGKAFRTEVYPIGIEPKEIAKQAA 237
Query: 686 QAAPRVIDTKQKIVLGVDRLDYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVL 745
P +L K +++++N +
Sbjct: 238 GPLP-------------PKLAQLKAELKNVQN--------------------------IF 258
Query: 746 GVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVG 805
V+RLDY+KGL R A+E LLEK+P+H K+ QIA SR DV+ YQD++ +++ G
Sbjct: 259 SVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAG 318
Query: 806 RINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEP 865
RING++ W+P+ Y+ + L +R + V LVTPLRDG NLVAKE+VA Q
Sbjct: 319 RINGKYGQLGWTPLYYLNQHFDRKLLXKIFRYSDVGLVTPLRDGXNLVAKEYVAAQDPAN 378
Query: 866 PGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVI 899
PGVL++S FAGA ++ ALI NPY+ D A +
Sbjct: 379 PGVLVLSQFAGAANELTSALIVNPYDRDEVAAAL 412
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 1075 KLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQR--RLGCRV 1132
++GFFLHIPFP +IF P D +L+ + D++GF E+ L F+DC R+ R
Sbjct: 148 RIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRS 207
Query: 1133 DRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQA--APRVIDTKQKI-----VLGVDRLD 1185
+ + G+ R PI I + + A P++ K ++ + V+RLD
Sbjct: 208 AKSHTA---WGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLD 264
Query: 1186 YTKGLVHR 1193
Y+KGL R
Sbjct: 265 YSKGLPER 272
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 1004 VLPTTLIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGKASLGL 1055
+LP ++ + ++GFFLHIPFP +IF P D +L+ + LG
Sbjct: 133 LLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGF 184
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 146/365 (40%), Gaps = 45/365 (12%)
Query: 147 DPKIFDSYYNGCCNGTFWPLFH------SMPDRAMFCAEHWRAYAQVNQEFADKTIKALQ 200
DP +F + N W + + P E W + + ++FAD +K+
Sbjct: 87 DPAVFRNVQNFMTANLMWAANNYGWDRWTQPSFGSDAREGWADFGRFTRDFADAILKS-- 144
Query: 201 ILAQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFP 260
A S P+ +HDY L+ +R EQ + F+HIP+P D +R+ P
Sbjct: 145 ------SAQSADPVYLVHDYQLVGVPALLR----EQRPDAPILLFVHIPWPSADYWRILP 194
Query: 261 WS--DEILQGMLGCDMVGFHIEDYCLNFVDCCQRRL-GCRVDRKNLLVEHGGRTVRIRPL 317
IL GML +GF + +C NF++ L R+DR+ + VE G R+R +
Sbjct: 195 KEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTM 254
Query: 318 PIAIP----YERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEH 373
P+ R QL + D ++V+ R D K ++AF +L
Sbjct: 255 PLGYSPLTLDGRNPQLPEGIEEWAD-GHRLVVHSGRTDPIKNAERAVRAF--VLAARGGG 311
Query: 374 LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT-----PNWSPIRYIYGCISQ 428
LEK +L P+R V D ++ V N + N + + + C
Sbjct: 312 LEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIAC--- 368
Query: 429 DELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALIC 487
+R A + + DG NL F A +NE +I+S GA E + E
Sbjct: 369 ------FRRADLLIFNSTVDGQNL--STFEAPLVNERDADVILSETCGAAEVLGEYCRSV 420
Query: 488 NPYEI 492
NP+++
Sbjct: 421 NPFDL 425
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 143/377 (37%), Gaps = 80/377 (21%)
Query: 529 QSSLGGNT----SAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTI 584
Q S G + + + + ++FAD +K+ A S P+ +HDY L+ +
Sbjct: 116 QPSFGSDAREGWADFGRFTRDFADAILKS--------SAQSADPVYLVHDYQLVGVPALL 167
Query: 585 RNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGCDMVGFHIEDYCLNFV 642
R EQ + F+HIP+P D +R+ P IL GML +GF + +C NF+
Sbjct: 168 R----EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFL 223
Query: 643 DCCQRRL-GCRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLG 701
+ L R+DR+ + VE G R+R +P+ +P +D +
Sbjct: 224 ESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGY-----------SPLTLDGRNP---- 268
Query: 702 VDRLDYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLK 761
QL + D ++V+ R D K ++
Sbjct: 269 --------------------------QLPEGIEEWAD-GHRLVVHSGRTDPIKNAERAVR 301
Query: 762 AFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT-----PNW 816
AF +L LEK +L P+R V D ++ V N + N
Sbjct: 302 AF--VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDND 359
Query: 817 SPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAG 876
+ + + C +R A + + DG NL F A +NE +I+S G
Sbjct: 360 NDVNHTIAC---------FRRADLLIFNSTVDGQNL--STFEAPLVNERDADVILSETCG 408
Query: 877 AGEQMHE-ALICNPYEI 892
A E + E NP+++
Sbjct: 409 AAEVLGEYCRSVNPFDL 425
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 1069 EQNLKFKLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGCDMVGFHIEDYCLNFVDCCQR 1126
EQ + F+HIP+P D +R+ P IL GML +GF + +C NF++
Sbjct: 169 EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVAD 228
Query: 1127 RL-GCRVDRKNLLVEHGGRTVRIRPLPIAIP----YERFVQLAQAAPRVIDTKQKIVLGV 1181
L R+DR+ + VE G R+R +P+ R QL + D ++V+
Sbjct: 229 LLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD-GHRLVVHS 287
Query: 1182 DRLDYTKGLVHRNELFILKGMG 1203
R D K F+L G
Sbjct: 288 GRTDPIKNAERAVRAFVLAARG 309
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 1013 EQNLKFKLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGKASLGLLS--WLCNTIKNIAD 1068
EQ + F+HIP+P D +R+ P IL GML ++G + W N ++++AD
Sbjct: 169 EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVAD 228
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 146/365 (40%), Gaps = 45/365 (12%)
Query: 147 DPKIFDSYYNGCCNGTFWPLFH------SMPDRAMFCAEHWRAYAQVNQEFADKTIKALQ 200
DP +F + N W + + P E W + + ++FAD +K+
Sbjct: 88 DPAVFRNVQNFMTANLMWAANNYGWDRWTQPSFGSDAREGWADFGRFTRDFADAILKS-- 145
Query: 201 ILAQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFP 260
A S P+ +HDY L+ +R EQ + F+HIP+P D +R+ P
Sbjct: 146 ------SAQSADPVYLVHDYQLVGVPALLR----EQRPDAPILLFVHIPWPSADYWRILP 195
Query: 261 WS--DEILQGMLGCDMVGFHIEDYCLNFVDCCQRRL-GCRVDRKNLLVEHGGRTVRIRPL 317
IL GML +GF + +C NF++ L R+DR+ + VE G R+R +
Sbjct: 196 KEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTM 255
Query: 318 PIAIP----YERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEH 373
P+ R QL + D ++V+ R D K ++AF +L
Sbjct: 256 PLGYSPLTLDGRNPQLPEGIEEWAD-GHRLVVHSGRTDPIKNAERAVRAF--VLAARGGG 312
Query: 374 LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT-----PNWSPIRYIYGCISQ 428
LEK +L P+R V D ++ V N + N + + + C
Sbjct: 313 LEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIAC--- 369
Query: 429 DELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALIC 487
+R A + + DG NL F A +NE +I+S GA E + E
Sbjct: 370 ------FRRADLLIFNSTVDGQNL--STFEAPLVNERDADVILSETCGAAEVLGEYCRSV 421
Query: 488 NPYEI 492
NP+++
Sbjct: 422 NPFDL 426
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 143/377 (37%), Gaps = 80/377 (21%)
Query: 529 QSSLGGNT----SAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTI 584
Q S G + + + + ++FAD +K+ A S P+ +HDY L+ +
Sbjct: 117 QPSFGSDAREGWADFGRFTRDFADAILKS--------SAQSADPVYLVHDYQLVGVPALL 168
Query: 585 RNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGCDMVGFHIEDYCLNFV 642
R EQ + F+HIP+P D +R+ P IL GML +GF + +C NF+
Sbjct: 169 R----EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFL 224
Query: 643 DCCQRRL-GCRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLG 701
+ L R+DR+ + VE G R+R +P+ +P +D +
Sbjct: 225 ESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGY-----------SPLTLDGRNP---- 269
Query: 702 VDRLDYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLK 761
QL + D ++V+ R D K ++
Sbjct: 270 --------------------------QLPEGIEEWAD-GHRLVVHSGRTDPIKNAERAVR 302
Query: 762 AFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT-----PNW 816
AF +L LEK +L P+R V D ++ V N + N
Sbjct: 303 AF--VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDND 360
Query: 817 SPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAG 876
+ + + C +R A + + DG NL F A +NE +I+S G
Sbjct: 361 NDVNHTIAC---------FRRADLLIFNSTVDGQNL--STFEAPLVNERDADVILSETCG 409
Query: 877 AGEQMHE-ALICNPYEI 892
A E + E NP+++
Sbjct: 410 AAEVLGEYCRSVNPFDL 426
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 1069 EQNLKFKLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGCDMVGFHIEDYCLNFVDCCQR 1126
EQ + F+HIP+P D +R+ P IL GML +GF + +C NF++
Sbjct: 170 EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVAD 229
Query: 1127 RL-GCRVDRKNLLVEHGGRTVRIRPLPIAIP----YERFVQLAQAAPRVIDTKQKIVLGV 1181
L R+DR+ + VE G R+R +P+ R QL + D ++V+
Sbjct: 230 LLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD-GHRLVVHS 288
Query: 1182 DRLDYTKGLVHRNELFILKGMG 1203
R D K F+L G
Sbjct: 289 GRTDPIKNAERAVRAFVLAARG 310
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 1013 EQNLKFKLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGKASLGLLS--WLCNTIKNIAD 1068
EQ + F+HIP+P D +R+ P IL GML ++G + W N ++++AD
Sbjct: 170 EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVAD 229
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 152/385 (39%), Gaps = 46/385 (11%)
Query: 128 DKVSDLLKTLQEKVMS-VHIDPKIFDSYYNGCCNGTFWPLFH------SMPDRAMFCAEH 180
D V+ L + +E ++ + DP +F + N W + + P E
Sbjct: 68 DGVTXELHSGREILVRLIRHDPAVFRNVQNFXTANLXWAANNYGWDRWTQPSFGSDAREG 127
Query: 181 WRAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKF 240
W + + ++FAD +K+ A S P+ +HDY L+ +R EQ
Sbjct: 128 WADFGRFTRDFADAILKS--------SAQSADPVYLVHDYQLVGVPALLR----EQRPDA 175
Query: 241 KLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGCDMVGFHIEDYCLNFVDCCQRRL-GCR 297
+ F+HIP+P D +R+ P IL G L +GF + +C NF++ L R
Sbjct: 176 PILLFVHIPWPSADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVADLLPDAR 235
Query: 298 VDRKNLLVEHGGRTVRIRPLPIAIP----YERFVQLAQAAPRVIDTKQKIVLGVDRLDYT 353
+DR+ VE G R+R P+ R QL + D ++V+ R D
Sbjct: 236 IDREAXTVEWRGHRTRLRTXPLGYSPLTLDGRNPQLPEGIEEWAD-GHRLVVHSGRTDPI 294
Query: 354 KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT 413
K ++AF +L LEK L P+R V D ++ V N +
Sbjct: 295 KNAERAVRAF--VLAARGGGLEKTRXLVRXNPNRLYVPANADYVHRVETAVAEANAELGS 352
Query: 414 -----PNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGV 468
N + + + C +R A + + DG NL F A +NE
Sbjct: 353 DTVRIDNDNDVNHTIAC---------FRRADLLIFNSTVDGQNL--STFEAPLVNERDAD 401
Query: 469 LIVSPFAGAGEQMHE-ALICNPYEI 492
+I+S GA E + E NP+++
Sbjct: 402 VILSETCGAAEVLGEYCRSVNPFDL 426
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 139/377 (36%), Gaps = 80/377 (21%)
Query: 529 QSSLGGNT----SAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTI 584
Q S G + + + + ++FAD +K+ A S P+ +HDY L+ +
Sbjct: 117 QPSFGSDAREGWADFGRFTRDFADAILKS--------SAQSADPVYLVHDYQLVGVPALL 168
Query: 585 RNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGCDMVGFHIEDYCLNFV 642
R EQ + F+HIP+P D +R+ P IL G L +GF + +C NF+
Sbjct: 169 R----EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFL 224
Query: 643 DCCQRRL-GCRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLG 701
+ L R+DR+ VE G R+R P+ +P +D +
Sbjct: 225 ESVADLLPDARIDREAXTVEWRGHRTRLRTXPLGY-----------SPLTLDGRNP---- 269
Query: 702 VDRLDYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLK 761
QL + D ++V+ R D K ++
Sbjct: 270 --------------------------QLPEGIEEWAD-GHRLVVHSGRTDPIKNAERAVR 302
Query: 762 AFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT-----PNW 816
AF +L LEK L P+R V D ++ V N + N
Sbjct: 303 AF--VLAARGGGLEKTRXLVRXNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDND 360
Query: 817 SPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAG 876
+ + + C +R A + + DG NL F A +NE +I+S G
Sbjct: 361 NDVNHTIAC---------FRRADLLIFNSTVDGQNL--STFEAPLVNERDADVILSETCG 409
Query: 877 AGEQMHE-ALICNPYEI 892
A E + E NP+++
Sbjct: 410 AAEVLGEYCRSVNPFDL 426
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Query: 1069 EQNLKFKLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGCDMVGFHIEDYCLNFVDCCQR 1126
EQ + F+HIP+P D +R+ P IL G L +GF + +C NF++
Sbjct: 170 EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVAD 229
Query: 1127 RL-GCRVDRKNLLVEHGGRTVRIRPLPIAIP----YERFVQLAQAAPRVIDTKQKIVLGV 1181
L R+DR+ VE G R+R P+ R QL + D ++V+
Sbjct: 230 LLPDARIDREAXTVEWRGHRTRLRTXPLGYSPLTLDGRNPQLPEGIEEWAD-GHRLVVHS 288
Query: 1182 DRLDYTKGLVHRNELFILKGMG 1203
R D K F+L G
Sbjct: 289 GRTDPIKNAERAVRAFVLAARG 310
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1013 EQNLKFKLGFFLHIPFPPWDIFRLFPWS--DEILQGMLGKASLGLLS--WLCNTIKNIAD 1068
EQ + F+HIP+P D +R+ P IL G L ++G + W N ++++AD
Sbjct: 170 EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVAD 229
>pdb|1LF6|A Chain A, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF6|B Chain B, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF9|A Chain A, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
pdb|1LF9|B Chain B, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
Length = 684
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 155 YNGCCNGTFWPLFHSMPDRAMF---CAEHWRAYAQVNQEFADKT-IKALQILAQEE-PAD 209
Y+G G WPL +R M+ + Y + ++FA++ I + Q+ P D
Sbjct: 590 YHGAGKGRLWPLL--TGERGMYEIAAGKDATPYVKAMEKFANEGGIISEQVWEDTGLPTD 647
Query: 210 SGTPLVWIH-DYHLMLAANTIRNIADEQNLKFK 241
S +PL W H +Y ++ A+N + D ++ +K
Sbjct: 648 SASPLNWAHAEYVILFASNIEHKVLDMPDIVYK 680
>pdb|3UM9|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
pdb|3UM9|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
Length = 230
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 24/119 (20%)
Query: 19 MGTLEDFDEY-LSKYIGTTNKLALLLDYDG---------TLAPIAPHPDMAVLPEETKRT 68
MG +DF+ L T L L LD DG +L P A P +
Sbjct: 55 MGQYQDFESATLDALRYTCGSLGLALDADGEAHLCSEYLSLTPFADVP----------QA 104
Query: 69 LQKLANLPDVHISIISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTEFE 127
LQ+L + +I+S + H++ ++VG GLT + +H +I D R P +E
Sbjct: 105 LQQL-RAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDH---LISVDEVRLFKPHQKVYE 159
>pdb|1G5G|A Chain A, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|B Chain B, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|C Chain C, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|D Chain D, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|E Chain E, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|F Chain F, Fragment Of Fusion Protein From Newcastle Disease Virus
Length = 481
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 422 IYGCISQDELASFYRDAAVALVTPLR--DGMNLVAKEFVACQINEPPGVLIVSPFAGAGE 479
IY C+S + A Y AL TP G + + C+ +PPG I+S G
Sbjct: 328 IYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPG--IISQNYGEAV 385
Query: 480 QMHEALICNPYEIDA 494
+ + CN +D
Sbjct: 386 SLIDRQSCNILSLDG 400
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 822 IYGCISQDELASFYRDAAVALVTPLR--DGMNLVAKEFVACQINEPPGVLIVSPFAGAGE 879
IY C+S + A Y AL TP G + + C+ +PPG I+S G
Sbjct: 328 IYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPG--IISQNYGEAV 385
Query: 880 QMHEALICNPYEIDA 894
+ + CN +D
Sbjct: 386 SLIDRQSCNILSLDG 400
>pdb|3BL8|A Chain A, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|B Chain B, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|C Chain C, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|D Chain D, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
Length = 580
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 113 PDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSY 154
P ++F+H P FE+ V + +++ + + + P++ D+Y
Sbjct: 513 PQDTKFIHTKPNRFEEVVWSKFNSKEKQYLHIGLKPRVRDNY 554
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 1227 DEYLSKNELFILKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKNELFILKGMGTLITE 1286
D+Y + + L I+ G + +G + + T + + E+FD L N++ +LK G+L
Sbjct: 50 DDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFN 109
Query: 1287 DGDDVLPTTMQPVTLEDFDEYLSKNELFILKGMGTLITEDGDDVLPTTMQPVTL 1340
D + P+ L + + + I+ G GT T +G + P +Q VT+
Sbjct: 110 D-------NVAPIALPEQGHTATGD--VIVTGWGT--TSEGGNT-PDVLQKVTV 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,711,429
Number of Sequences: 62578
Number of extensions: 2079476
Number of successful extensions: 5011
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4929
Number of HSP's gapped (non-prelim): 53
length of query: 1460
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1349
effective length of database: 8,027,179
effective search space: 10828664471
effective search space used: 10828664471
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)