RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy775
(1460 letters)
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase,
transferase; HET: U2F; 2.0A {Escherichia coli} SCOP:
c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Length = 482
Score = 563 bits (1454), Expect = 0.0
Identities = 142/384 (36%), Positives = 200/384 (52%), Gaps = 22/384 (5%)
Query: 144 VHIDPKIFDSYYNGCCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKALQILA 203
++ + D YYN N WP FH D F W Y +VN ADK + LQ
Sbjct: 66 FNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQ--- 122
Query: 204 QEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSD 263
D ++WIHDYHL+ A+ +R ++ + ++GFFLHIPFP +IF P D
Sbjct: 123 ---DDD----IIWIHDYHLLPFAHELR----KRGVNNRIGFFLHIPFPTPEIFNALPTYD 171
Query: 264 EILQGMLGCDMVGFHIEDYCLNFVDCCQRRLGCRVDRKNLLVEHGGRTVRIRPLPIAIPY 323
+L+ + D++GF E+ L F+DC G+ R PI I
Sbjct: 172 TLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKS-HTAWGKAFRTEVYPIGIEP 230
Query: 324 ERFVQLAQAA--PRVIDTKQ-----KIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEK 376
+ + A P++ K + + V+RLDY+KGL R A+E LLEK+P+H K
Sbjct: 231 KEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGK 290
Query: 377 VTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYR 436
+ QIA SR DV+ YQD++ +++ GRING++ W+P+ Y+ + L +R
Sbjct: 291 IRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFR 350
Query: 437 DAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAA 496
+ V LVTPLRDGMNLVAKE+VA Q PGVL++S FAGA ++ ALI NPY+ D A
Sbjct: 351 YSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVA 410
Query: 497 EVIHRALTMPEDERTLRMNYLRKR 520
+ RALTM ER R +
Sbjct: 411 AALDRALTMSLAERISRHAEMLDV 434
Score = 485 bits (1250), Expect = e-158
Identities = 132/465 (28%), Positives = 197/465 (42%), Gaps = 109/465 (23%)
Query: 538 AYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKL 597
Y +VN ADK + LQ D ++WIHDYHL+ A+ +R ++ + ++
Sbjct: 105 GYLRVNALLADKLLPLLQ------DDD----IIWIHDYHLLPFAHELR----KRGVNNRI 150
Query: 598 GFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQRRLGCRVDRKN 657
GFFLHIPFP +IF P D +L+ + D++GF E+ L F+DC
Sbjct: 151 GFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAK 210
Query: 658 LLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLIESIRN 717
G+ R PI I + + A K+ ++
Sbjct: 211 S-HTAWGKAFRTEVYPIGIEPKEIAKQAAG-----PLPPKL--------------AQLKA 250
Query: 718 SIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKV 777
+ + + V+RLDY+KGL R A+E LLEK+P+H K+
Sbjct: 251 ELK-------------------NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKI 291
Query: 778 TLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRD 837
QIA SR DV+ YQD++ +++ GRING++ W+P+ Y+ + L +R
Sbjct: 292 RYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRY 351
Query: 838 AAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAE 897
+ V LVTPLRDGMNLVAKE+VA Q PGVL++S FAGA ++ ALI NPY+ D A
Sbjct: 352 SDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAA 411
Query: 898 VIFCPYLGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHR 957
+ A
Sbjct: 412 AL--------------------------------------DRA----------------- 416
Query: 958 ALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGMGTLITEDGD 1002
LTM ER R + +D+N+W F+ + ++ +
Sbjct: 417 -LTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAE 460
Score = 178 bits (453), Expect = 6e-48
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 1069 EQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQRRL 1128
++ + ++GFFLHIPFP +IF P D +L+ + D++GF E+ L F+DC
Sbjct: 143 KRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLT 202
Query: 1129 GCRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAA--PRVIDTKQ-----KIVLGV 1181
G+ R PI I + + A P++ K + + V
Sbjct: 203 RVTTRSAK-SHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSV 261
Query: 1182 DRLDYTKGLVHRNELFILKGMGTLITE 1208
+RLDY+KGL R L+ +
Sbjct: 262 ERLDYSKGLPER-----FLAYEALLEK 283
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase;
1.70A {Streptomyces hygroscopicus} PDB: 3t7d_A*
Length = 496
Score = 526 bits (1356), Expect = e-173
Identities = 99/420 (23%), Positives = 156/420 (37%), Gaps = 34/420 (8%)
Query: 115 GSRFVHPIPTEFEDKVSDLLKTLQE-KVMSVHIDPKIFDSYYNGCCNGTFWPLFHSMPDR 173
S D V+ L + +E V + DP +F + N W + DR
Sbjct: 54 DSEDDRRASALNPDGVTMELHSGREILVRLIRHDPAVFRNVQNFMTANLMWAANNYGWDR 113
Query: 174 AM------FCAEHWRAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAAN 227
E W + + ++FAD + + A S P+ +HDY L+
Sbjct: 114 WTQPSFGSDAREGWADFGRFTRDFADAIL--------KSSAQSADPVYLVHDYQLVGVPA 165
Query: 228 TIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFP--WSDEILQGMLGCDMVGFHIEDYCLN 285
+R EQ + F+HIP+P D +R+ P IL GML +GF + +C N
Sbjct: 166 LLR----EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRN 221
Query: 286 FVDCCQRRLG-CRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTK---Q 341
F++ L R+DR+ + VE G R+R +P+ P I+
Sbjct: 222 FLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWADGH 281
Query: 342 KIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMD 401
++V+ R D K ++AF +L LEK +L P+R V D ++
Sbjct: 282 RLVVHSGRTDPIKNAERAVRAF--VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVE 339
Query: 402 QLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQ 461
V N + I + + +R A + + DG NL E
Sbjct: 340 TAVAEANAELGS----DTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVN 395
Query: 462 INEPPGVLIVSPFAGAGEQMHE-ALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKR 520
E +I+S GA E + E NP+++ AE I AL +R R
Sbjct: 396 --ERDADVILSETCGAAEVLGEYCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDA 453
Score = 449 bits (1158), Expect = e-144
Identities = 87/467 (18%), Positives = 147/467 (31%), Gaps = 122/467 (26%)
Query: 538 AYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKL 597
+ + ++FAD + + A S P+ +HDY L+ +R EQ +
Sbjct: 129 DFGRFTRDFADAIL--------KSSAQSADPVYLVHDYQLVGVPALLR----EQRPDAPI 176
Query: 598 GFFLHIPFPPWDIFRLFP--WSDEILQGMLGCDMVGFHIEDYCLNFVDCCQRRLG-CRVD 654
F+HIP+P D +R+ P IL GML +GF + +C NF++ L R+D
Sbjct: 177 LLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLPDARID 236
Query: 655 RKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLIES 714
R+ + VE G R+R +P+ P++ + ++ G
Sbjct: 237 REAMTVEWRGHRTRLRTMPLGYSPLTL---DGRNPQLPEGIEEWADG------------- 280
Query: 715 IRNSIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHL 774
++V+ R D K ++AF +L L
Sbjct: 281 --------------------------HRLVVHSGRTDPIKNAERAVRAF--VLAARGGGL 312
Query: 775 EKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASF 834
EK +L P+R V D ++ V N + I + +
Sbjct: 313 EKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGS----DTVRIDNDNDVNHTIAC 368
Query: 835 YRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHE-ALICNPYEID 893
+R A + + DG NL E E +I+S GA E + E NP+++
Sbjct: 369 FRRADLLIFNSTVDGQNLSTFEAPLVN--ERDADVILSETCGAAEVLGEYCRSVNPFDLV 426
Query: 894 AAAEVIFCPYLGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAE 953
AE I A
Sbjct: 427 EQAEAI--------------------------------------SAA------------- 435
Query: 954 VIHRALTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGMGTLITED 1000
L +R R + + W+++ L G+
Sbjct: 436 -----LAAGPRQRAEAAARRRDAARPWTLEAWVQAQLDGLAADHAAR 477
Score = 174 bits (444), Expect = 1e-46
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 1069 EQNLKFKLGFFLHIPFPPWDIFRLFP--WSDEILQGMLGCDMVGFHIEDYCLNFVDCCQR 1126
EQ + F+HIP+P D +R+ P IL GML +GF + +C NF++
Sbjct: 169 EQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVAD 228
Query: 1127 RLG-CRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTK---QKIVLGVD 1182
L R+DR+ + VE G R+R +P+ P I+ ++V+
Sbjct: 229 LLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWADGHRLVVHSG 288
Query: 1183 RLDYTKGLVHR 1193
R D K
Sbjct: 289 RTDPIKNAERA 299
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural
genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP:
c.108.1.15
Length = 239
Score = 112 bits (281), Expect = 1e-27
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 40 ALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEG 99
+ LDYDGTL PI +P+ + + L D + I++GR+ + + ++
Sbjct: 3 LIFLDYDGTLVPIIMNPEESYADAGLLSLISDLKERFDTY--IVTGRSPEEISRFLPLD- 59
Query: 100 LTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKV 141
+ HG +G + F + + + V
Sbjct: 60 INMICYHGAC-SKINGQIVYNNGSDRFLGVFDRIYEDTRSWV 100
Score = 84.3 bits (209), Expect = 5e-18
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 1397 ALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEG 1456
+ LDYDGTL PI +P+ + + L D + I++GR+ + + ++
Sbjct: 3 LIFLDYDGTLVPIIMNPEESYADAGLLSLISDLKERFDTY--IVTGRSPEEISRFLPLD- 59
Query: 1457 LTYA 1460
+
Sbjct: 60 INMI 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 3e-12
Identities = 83/551 (15%), Positives = 149/551 (27%), Gaps = 185/551 (33%)
Query: 945 PYEIDAAAEVIHRALTMPEDERTLRM--NYLRKREK--------VHDVNY-WMRSFLKGM 993
P I + E+ H ++ TLR+ L K+E+ V +NY ++ S +K
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-- 99
Query: 994 GTLITEDGDDVLPTTLIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGKASL 1053
TE + T + ++++ + F +++ RL L+
Sbjct: 100 ----TEQRQPSMMTRMYIEQRDRLYNDN----QVFAKYNVSRL----QPYLK-------- 139
Query: 1054 GLLSWLCNTIKNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGC------- 1106
L L L+ + G+LG
Sbjct: 140 -LRQAL----------LELRPAKNVLID--------------------GVLGSGKTWVAL 168
Query: 1107 ---------DMVGFHIEDYCLNFVDCCQRRLGCRVDRKNLLVEHGGRTVRIRPLPIAIPY 1157
+ F I + LN +C ++ L+ R +
Sbjct: 169 DVCLSYKVQCKMDFKI--FWLNLKNCNSPET--VLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 1158 ERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRNELFILKGMGTLITEDGDDVLPTT 1217
R + R++ +K + N L +L +V
Sbjct: 225 LRIHSIQAELRRLLKSKP----------------YENCLLVL-----------LNV---- 253
Query: 1218 MQPVTLEDFDEYLSKNELFILKGMGTLITEDG---DDVLPTTMQPVTLEDFDEYLSKNE- 1273
F+ K IL L T D + T ++L+ L+ +E
Sbjct: 254 QNAKAWNAFN-LSCK----IL-----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 1274 --LFILKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSKNELFILKGMGTLITEDGD--- 1328
L LK + + LP E L+ N L + I +
Sbjct: 304 KSLL-LKYLDCRPQD-----LP-----------REVLTTNPR-RLSIIAESIRDGLATWD 345
Query: 1329 -------DVLPTTMQPVTLEDFDEYLSKN---ELLILKGMGTLITEDGDDVLP---TTMQ 1375
D L T ++ +L + + L + I +L +
Sbjct: 346 NWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFP-PSAHIPT---ILLSLIWFDVI 400
Query: 1376 PVTLEDFDEYLSKYIGTTNKLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDV 1435
+ L KY L++ P +P KL N +
Sbjct: 401 KSDVMVVVNKLHKY--------SLVEKQ-------PKESTISIPSIYLELKVKLENEYAL 445
Query: 1436 HISIISGRNVH 1446
H SI+ N+
Sbjct: 446 HRSIVDHYNIP 456
Score = 66.8 bits (162), Expect = 4e-11
Identities = 96/602 (15%), Positives = 186/602 (30%), Gaps = 182/602 (30%)
Query: 573 HDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGF 632
H +H+ E ++K DI +F D + +
Sbjct: 3 HHHHMDFETG-------EHQYQYK------------DILSVF--EDAFVD-----NFDCK 36
Query: 633 HIEDYCLNFVDCCQRRLGCRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVI 692
++D + + + + ++++ L F L ++
Sbjct: 37 DVQDM--------PKSILSKEEIDHIIMS-KDAVSGTLRL--------FWTLLSKQEEMV 79
Query: 693 DTKQKIVLGVDRLDYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIV-LGVDRLD 751
QK V V R++Y K L+ I+ P + R+ + Q V RL
Sbjct: 80 ---QKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 752 YTKGLVHRLKAFETLLEKHPEHLEKVTL----------LQIAVPSRTDVKEY-------- 793
+L+ + LLE P + V + + + V V+
Sbjct: 136 ----PYLKLR--QALLELRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 794 --------QDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCIS-QDELASF-----YRDAA 839
+ + E + +L+ +I+ +T+ + S Q EL Y +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 840 VALVTPLRDGMNL-VAKEF-VACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAE 897
LV L + N F ++C+I L+ + F + + A +
Sbjct: 248 --LV--LLNVQNAKAWNAFNLSCKI------LLTTRFKQVTDFLSAATTTHISLDHH--S 295
Query: 898 VIFCPYLGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHR 957
+ P +L+ K ++ C+ + P E L NP + AE I
Sbjct: 296 MTLTPDEVKSLLLK-YLDCRPQDLP---------------REVLTTNPRRLSIIAESIR- 338
Query: 958 ALTMPEDERTLRMNYLRK--REKVHDVNYWMRSFLKGMGTLITEDGDDVLPTTLIADEQN 1015
+ + + +K+ + + S L +VL A+ +
Sbjct: 339 -------DGLATWDNWKHVNCDKLTTI---IESSL------------NVLEP---AEYRK 373
Query: 1016 LKFKLGFF---LHIPFPPWDIFRLFPWSD-------EILQGMLGKASLGLLSWLCN---T 1062
+ +L F HIP + W D ++ + K SL + +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLH-KYSL-VEKQPKESTIS 427
Query: 1063 IKNIADEQNLKFKLGFFLH--------IP--FPPWDIFRLFPWSDEILQGMLGCDMVGFH 1112
I +I E +K + + LH IP F D+ P+ D+ +G H
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP--PYLDQYF-----YSHIGHH 480
Query: 1113 IE 1114
++
Sbjct: 481 LK 482
Score = 64.5 bits (156), Expect = 2e-10
Identities = 98/735 (13%), Positives = 201/735 (27%), Gaps = 230/735 (31%)
Query: 89 HNVMEM-VGIEGLTYAGNHGLEIIHPDGSRFVHPIPTEFEDK-VSDLLKTLQEKVMSVHI 146
H+ M+ G Y +I+ F F+ K V D+ K++ K HI
Sbjct: 4 HHHMDFETGEHQYQYK-----DILS----VFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 147 ---DPKIFDSYYNGCCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKALQILA 203
+ + FW ++ + +E K L
Sbjct: 55 IMSKDAVSGTLR------LFW----------TLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 204 QEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKLGFFLHIPFPPWDIFR------ 257
+ E + + + N D Q F +++ R
Sbjct: 99 KTEQRQPSMMTRMYIEQR-----DRLYN--DNQ------------VFAKYNVSRLQPYLK 139
Query: 258 -------LFPWSDEILQGMLGC----------------DMVGFHIEDYCLNFVDCCQRRL 294
L P + ++ G+LG + F I + LN +C
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPET 197
Query: 295 GCRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTK 354
++ L+ R + R + R++ +K Y
Sbjct: 198 --VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----------YEN 245
Query: 355 GLVHRLKAFETLLE--KHPEHLEKVTLL-QIAVPSRTDVKEYQDLKEEMDQLVGRINGRF 411
L+ +L ++ + L +I + +R K+ D L
Sbjct: 246 CLL--------VLLNVQNAKAWNAFNLSCKILLTTRF--------KQVTDFLSAATTTHI 289
Query: 412 TTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINE-PPGVLI 470
+ + D + +L+ K ++ C+ + P VL
Sbjct: 290 S--------------LDHHSMTLTPD----------EVKSLLLK-YLDCRPQDLPREVLT 324
Query: 471 VSPFAGA--GEQMHEALICNPY----EIDAAAEVIHRALTMPEDERTLRMNYLRKR---- 520
+P + E + + L D +I +L L RK
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL------NVLEPAEYRKMFDRL 378
Query: 521 ---EKHMNCPGQ--SSLGGNTSAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDY 575
+ P S + + +K K L +++P +S + I
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVI--KSDVMVVVNKLHKYS--LVEKQPKES---TISIPSI 431
Query: 576 HLMLAANTIRNIADEQNLKFKL--GFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFH 633
+L L + +E L + + + F D+ P+ D+ +G H
Sbjct: 432 YLELK----VKLENEYALHRSIVDHYNIPKTFDSDDLIP--PYLDQYF-----YSHIGHH 480
Query: 634 I------EDYC--------LNFVDCCQRRL-------GCRVDRKNLLVEHGGRTVRIRPL 672
+ E F+ ++++ N L + ++
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFL---EQKIRHDSTAWNASGSILNTLQQ-----LKF--- 529
Query: 673 PIAIPYERFVQLAQAAP-RVIDTKQKIVLGVDRLDYTKGLIESIRNSIAIPYERFVQLAQ 731
Y+ ++ R+++ LD+ + E++ S Y +++A
Sbjct: 530 -----YKPYICDNDPKYERLVN---------AILDFLPKIEENLICS---KYTDLLRIAL 572
Query: 732 AAPR--VIDTKQKIV 744
A + + K V
Sbjct: 573 MAEDEAIFEEAHKQV 587
Score = 43.7 bits (102), Expect = 6e-04
Identities = 73/553 (13%), Positives = 159/553 (28%), Gaps = 173/553 (31%)
Query: 8 LSKNELFILKGMGTLEDFDEYLSKYIGTTNKLALLLDYDGTLAPIAPHPDMAVLPEETKR 67
L + ++ G+ G T + +
Sbjct: 147 LRPAKNVLIDGVLG-----------SGKT-----------------------WVALDVCL 172
Query: 68 TLQKLANLPD-VH-ISIISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTE 125
+ + + + +++ + + V+EM ++ L Y + D S I
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWT-SRSDHSS---NIKLR 226
Query: 126 FEDKVSDLLKTLQEK-------VMSVHI-DPKIFDSYYNGCCNGTFWPLFHSMPDRAMFC 177
++L + L+ K V+ ++ + K ++++ C + + + +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSC------KILLTTRFKQVTD 279
Query: 178 AEHWRAYAQVNQEFADKTI---KALQILA-------QEEP--ADSGTPLV---------- 215
++ + T+ + +L Q+ P + P
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 216 ----WIHDYHLMLAANTIRNI----------ADEQNLKFKLGFF---LHIPFPPWDIFRL 258
W D + + + I A+ + + +L F HIP +
Sbjct: 340 GLATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-- 395
Query: 259 FPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQRRLGCRVDRKNLLVEHGGRTVRIRPLP 318
W D I+ + V+ + K + + ++
Sbjct: 396 --WFDV--------------IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 319 IAIPY--ERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEK 376
V P+ D+ I +D+ Y+ + H LK EH E+
Sbjct: 440 ENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNI--------EHPER 489
Query: 377 VTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYR 436
+TL + + D L +I R + W+ I + Q + FY+
Sbjct: 490 MTLFR---------MVFLDF----RFLEQKI--RHDSTAWNASGSILNTLQQLK---FYK 531
Query: 437 DAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAA 496
+ P + + +F+ ++ E LIC+ Y
Sbjct: 532 P-YICDNDPKYERLVNAILDFL--------------------PKIEENLICSKY-----T 565
Query: 497 EVIHRALTMPEDE 509
+++ AL M EDE
Sbjct: 566 DLLRIAL-MAEDE 577
Score = 32.9 bits (74), Expect = 1.1
Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 55/222 (24%)
Query: 1 MEDFDEYLSKNE-------LFIL-KG----MGTLE----DFDEYLSKYIGTTNKLA--LL 42
+E L E L + L D + + NKL L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSL 416
Query: 43 LDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEGLTY 102
++ P +P KL N +H SI+ N+ +
Sbjct: 417 VEKQ-------PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD--------- 460
Query: 103 AGNHGLEIIHPDGSRFV----HPIPTEFEDKVSDLLKTLQEKVMSVH-IDPKIFDSYYNG 157
+ L + D + H E +++ L + + + ++ KI
Sbjct: 461 --SDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFRMV---FLDFRFLEQKIRHDSTAW 514
Query: 158 CCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKAL 199
+G+ + + ++ Y N ++ + A+
Sbjct: 515 NASGSILNTLQQL--------KFYKPYICDNDPKYERLVNAI 548
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 60.2 bits (145), Expect = 3e-09
Identities = 21/229 (9%), Positives = 56/229 (24%), Gaps = 40/229 (17%)
Query: 301 KNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHR- 359
K G I K+KI+L R +
Sbjct: 206 KQYFNNKGYNFTDEYFFQPKINTTLK-----NYINDKRQKEKIILVYGRPSVKRNAFTLI 260
Query: 360 LKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 419
++A + ++K+ E +I VG + +
Sbjct: 261 VEALKIFVQKYDRSNE----WKII-------------------SVGEKHKDIALGKGIHL 297
Query: 420 RYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGE 479
G ++ ++ A + +++ + + + E G+ +++ +
Sbjct: 298 NS-LGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHF------GLRVITNKYENKD 350
Query: 480 QM---HEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKHMN 525
+ + AE + + + ++N
Sbjct: 351 LSNWHSNIVSLEQLNPENIAETLVELCMSFNNRDVDKKES-SNMMFYIN 398
Score = 44.8 bits (105), Expect = 2e-04
Identities = 17/164 (10%), Positives = 48/164 (29%), Gaps = 34/164 (20%)
Query: 740 KQKIVLGVDRLDYTKGLVHR-LKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKE 798
K+KI+L R + ++A + ++K+ E +I
Sbjct: 240 KEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNE----WKII--------------- 280
Query: 799 EMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFV 858
VG + + G ++ ++ A + +++ + + + E
Sbjct: 281 ----SVGEKHKDIALGKGIHLNS-LGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMA 335
Query: 859 ACQINEPPGVLIVSPFAGAGEQM---HEALICNPYEIDAAAEVI 899
G+ +++ + + + AE +
Sbjct: 336 HF------GLRVITNKYENKDLSNWHSNIVSLEQLNPENIAETL 373
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 5e-09
Identities = 100/673 (14%), Positives = 179/673 (26%), Gaps = 274/673 (40%)
Query: 178 AEHWRAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQN 237
+ +Q+ ++F + + A ++ + LV
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV---------------------- 61
Query: 238 LKFKLGFFLHIPFPPWDIFRLFPWS-----DEILQGMLGCDMVGFHIEDYCLN------F 286
KF LG+ + L S D++L L E+ L
Sbjct: 62 GKF-LGY----------VSSLVEPSKVGQFDQVLNLCLT------EFENCYLEGNDIHAL 104
Query: 287 VDCCQRRLGCRVDRKNLLVEH--GGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIV 344
+ + + L+++ R + RP L +A + ++V
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA----LFRAVG---EGNAQLV 157
Query: 345 L-----GVDRLDYTKGLVHRLKAF----ETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQD 395
G + DY + L + + L++ E L ++ + + D ++
Sbjct: 158 AIFGGQG-NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL------IRTTLDAEKV-- 208
Query: 396 LKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLV-- 453
+ ++ ++ + TP +D L S ++ PL + ++
Sbjct: 209 FTQGLN-ILEWLENPSNTP------------DKDYLLS----IPISC--PL---IGVIQL 246
Query: 454 AKEFVACQI-NEPPGVLIVSPFAGAGEQMH-EALICNPYEIDAAAEVIHRALTMPEDERT 511
A V ++ PG L S GA H + L+ A I
Sbjct: 247 AHYVVTAKLLGFTPGEL-RSYLKGA--TGHSQGLV--------TAVAI------------ 283
Query: 512 LRMNYLRKREKHMNCPGQSSLGGNTSAYAQVNQEFADKTIKALQIL------AQE----- 560
A + F KA+ +L E
Sbjct: 284 --------------------------AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 561 --EPA---DS-----GTPLVWIHDYHLMLAANTIRNIADEQ--------NLKFKLGFFLH 602
P+ DS G P ML+ I N+ EQ N G +
Sbjct: 318 SLPPSILEDSLENNEGVP-------SPMLS---ISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 603 IP-------F----PPWDIFRLFPWSDEILQGM---LGCDMVGFHIEDYCLNFVDCCQRR 648
I PP ++ L + L+ G D Q R
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGL----NLTLRKAKAPSGLD-----------------QSR 406
Query: 649 LGCRVDRKNLLVEHGGRTVRI--RPLPIAIPY-ERFVQLAQAAPRVIDTKQKIVLGVDRL 705
+ R ++ R LP+A P+ L A+ +
Sbjct: 407 -----------IPFSERKLKFSNRFLPVASPFHSHL--LVPASDLINK------------ 441
Query: 706 DYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFET 765
D K + I IP V DT G D + + R+ +
Sbjct: 442 DLVKNNVSFNAKDIQIP-------------VYDTFD----GSDLRVLSGSISERI--VDC 482
Query: 766 LLEKHPEHLEKVT 778
++ P E T
Sbjct: 483 IIRL-PVKWETTT 494
Score = 54.3 bits (130), Expect = 4e-07
Identities = 78/428 (18%), Positives = 115/428 (26%), Gaps = 162/428 (37%)
Query: 18 GMGTLED-FDEYLSK-Y-IGTTNKLALLLDYDGTLAPIAPHPDMA--VLPE--ETKRTLQ 70
G G +D F+E L Y L+ TL+ + A V + L+
Sbjct: 162 GQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 71 KLANLPDVH--ISI-ISGRNVHNVMEMVGIEGLT----Y---AGNHGLEIIHPDGSRFVH 120
+N PD +SI IS I G+ Y A G
Sbjct: 221 NPSNTPDKDYLLSIPIS---------CPLI-GVIQLAHYVVTAKLLGFT----------- 259
Query: 121 PIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSYYNGCCNGTFWPLFHSMPDRA---MFC 177
P E + Q V +V I DS W F +A +F
Sbjct: 260 --PGELRSYLKGATGHSQGLVTAVAIAET--DS----------WESFFVSVRKAITVLF- 304
Query: 178 AEHW---RAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTIRNIAD 234
+ R E T IL + G P ML+ I N+
Sbjct: 305 ---FIGVRC-----YEAYPNTSLPPSILEDSLENNEGVP-------SPMLS---ISNLTQ 346
Query: 235 EQ--------NLKFKLGFFLHIP-------F----PPWDIFRLFPWSDEILQGM---LGC 272
EQ N G + I PP ++ L + L+ G
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL----NLTLRKAKAPSGL 402
Query: 273 DMVGFHIEDYCLNFVDCCQRRLGCRVDRKNLLVEHGGRTVRI--RPLPIAIPY------- 323
D Q R + R ++ R LP+A P+
Sbjct: 403 D-----------------QSR-----------IPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 324 --ERFVQ-LAQ----------AAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKH 370
+ + L + P V DT G D + + R+ + ++
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIP-VYDTFD----GSDLRVLSGSISERI--VDCIIRL- 486
Query: 371 PEHLEKVT 378
P E T
Sbjct: 487 PVKWETTT 494
Score = 54.3 bits (130), Expect = 4e-07
Identities = 110/656 (16%), Positives = 184/656 (28%), Gaps = 238/656 (36%)
Query: 27 EYLSKYIGTTNKLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLAN-LPDVHISIISG 85
E + K++G + V P + + Q L L + + G
Sbjct: 59 ELVGKFLG--------------------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
Query: 86 RNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVH 145
++H + + LL+ ++
Sbjct: 99 NDIHAL--------------------------------------AAKLLQENDTTLVKTK 120
Query: 146 IDPKIFDSYYNGCCNGTFWPLFHSMPDRAMFCA---EHWRAYAQVNQEF-----ADKTIK 197
++ +Y P F + A+F A + + A F D +
Sbjct: 121 ---ELIKNYITARIMAKR-P-FDKKSNSALFRAVGEGNAQLVAI----FGGQGNTDDYFE 171
Query: 198 ALQILAQEEPADSGTPLV--WIHDYHLMLAANTIRNIADEQNLKFKLGF----FLHIP-- 249
L+ L + LV I L + IR D + + F G +L P
Sbjct: 172 ELRDL-----YQTYHVLVGDLIKFSAETL-SELIRTTLDAEKV-FTQGLNILEWLENPSN 224
Query: 250 FPPWDIFRLFPWSDEILQGMLGCDMVGF----HIEDYCLNFVDCCQRRLGCRVDRKNLLV 305
P D P S C ++G H Y V + LG L
Sbjct: 225 TPDKDYLLSIPIS---------CPLIGVIQLAH---YV---VTA--KLLG--FTPGELRS 265
Query: 306 EHGGRTVRIRPLPIAIP------YERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHR 359
G T + L A+ +E F + A V+ +G V
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-----FFIG----------VRC 310
Query: 360 LKAF------ETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDL-KEEMDQLVGRINGRFT 412
+A+ ++LE E+ E V +++ +L +E++ V + N
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSI---------SNLTQEQVQDYVNKTNSHL- 360
Query: 413 TPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVS 472
P + IS L +G AK V ++ PP L
Sbjct: 361 -PAGKQVE-----IS------------------LVNG----AKNLV---VSGPPQSL--- 386
Query: 473 PFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLR--MNYLRKREKHMNCPGQS 530
G + + P +D R P ER L+ +L + P S
Sbjct: 387 --YGLNLTLRK--AKAPSGLD-----QSRI---PFSERKLKFSNRFLP-----VASPFHS 429
Query: 531 SLGGNTSAYAQVNQEFADKTI----KALQILAQEEPADSGTPLVWIHD-YHL-MLAANTI 584
L A +N++ + K +QI P+ D L +L+ +
Sbjct: 430 HL--LVPASDLINKDLVKNNVSFNAKDIQI-----------PVYDTFDGSDLRVLSGSIS 476
Query: 585 RNIAD---------EQNLKFKLGFFLHI-PFPPWDIFRLFPWSDEILQGMLGCDMV 630
I D E +FK HI F P L + G G ++
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKA---THILDFGPGGASGLGVLTHRNKDG-TGVRVI 528
Score = 53.5 bits (128), Expect = 6e-07
Identities = 107/645 (16%), Positives = 181/645 (28%), Gaps = 235/645 (36%)
Query: 758 HRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWS 817
+ + TL H LE LL VP+ + L+E+ F
Sbjct: 4 YSTRPL-TL--SHGS-LE-HVLL---VPTASFFI-ASQLQEQ-----------FNKILPE 43
Query: 818 PIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAK--EFVACQINEPPG-----VL- 869
P G + DE + P LV K +V+ + VL
Sbjct: 44 PTE---GFAADDEPTT-----------PA----ELVGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 870 -IVSPFAGA---GEQMHEALIC-----NPYEIDAAAEVIFCPYLGMNLVAKEFVACQINE 920
++ F G +H AL N + E+I + + F +
Sbjct: 86 LCLTEFENCYLEGNDIH-ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD----KK 140
Query: 921 PPGVL----------IVSPFAGAG------EQMHEALICNPYE------IDAAAEVIHRA 958
L +V+ F G G E++ + + Y I +AE +
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD--LYQTYHVLVGDLIKFSAETLSEL 198
Query: 959 LTMPEDERTLR------MNYLRKREKVHDVNYWMRSFLKGMGTLITEDGDDVLPTTLIAD 1012
+ D + + +L D +Y + S I+ P LI
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-LLS------IPIS------CP--LIGV 243
Query: 1013 EQNLKF-----KLGFFLHIPFPPWDIFRLFPWSDEILQGMLGKASLGLL---------SW 1058
Q + LGF P ++ L+G G + GL+ SW
Sbjct: 244 IQLAHYVVTAKLLGF------TPGELR-------SYLKGATGHSQ-GLVTAVAIAETDSW 289
Query: 1059 ---LCNTIKNIADEQNLKFKLGFFLHIPFPPWDI-FRLFPWSDEILQG----MLGC-DMV 1109
+ K I + F +G + +P + + S E +G ML ++
Sbjct: 290 ESFFVSVRKAIT----VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 1110 GFHIEDYC----------------L-----NFV-----------DCCQRRLGCR--VDRK 1135
++DY L N V + R+ +D+
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 1136 NLLVEHGGRTVRI--RPLPIAIPY-ERFVQLAQAAPRVID--TKQKIVLGVDRLDYTKGL 1190
+ R ++ R LP+A P+ L A+ + K + +
Sbjct: 406 R--IPFSERKLKFSNRFLPVASPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQIP--- 458
Query: 1191 VHRNELFILKGMGTLITEDGDD-------VLPT-----TMQPVTLEDFDEYLSKNELFIL 1238
V+ T DG D + PV ++ IL
Sbjct: 459 VYD-------------TFDGSDLRVLSGSISERIVDCIIRLPV---KWETTTQFKATHIL 502
Query: 1239 -------KGMGTLITE--DG---DDVLPTTMQPVTLEDFDEYLSK 1271
G+G L DG ++ T+ D+Y K
Sbjct: 503 DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI---NPDDDYGFK 544
Score = 51.6 bits (123), Expect = 2e-06
Identities = 89/576 (15%), Positives = 158/576 (27%), Gaps = 228/576 (39%)
Query: 919 NEPPGVL-IVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKRE 977
+EP +V F G + + + P ++ +V++ LT E E YL +
Sbjct: 52 DEPTTPAELVGKFLG-----YVSSLVEPSKVGQFDQVLNLCLT--EFENC----YLEGND 100
Query: 978 KVHDVNYWMRSFLKGMGTLITEDGDDVLPTTLIADEQNLK--FKLGFFLHIPFPPW---- 1031
+H + L+ E+ TTL+ ++ +K PF
Sbjct: 101 -IHAL----------AAKLLQEN-----DTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 1032 ----------DIFRLF-------PWSDEILQGMLGKASLGLLSWLCNTI--------KNI 1066
+ +F + +E L+ L + L+ L +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEE-LR-DLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 1067 ADEQNLKFKLGF----FLHIP--FPPWDIFRLFPWSDEILQGMLGCDMVGF----HIEDY 1116
D + + F G +L P P D P S C ++G H Y
Sbjct: 203 LDAEKV-FTQGLNILEWLENPSNTPDKDYLLSIPIS---------CPLIGVIQLAH---Y 249
Query: 1117 CLNFVDCCQRRLGCRVDRKNLLVEHGGRTVRIRPLPIAIP------YERFVQLA------ 1164
V + LG L G T + L A+ +E F
Sbjct: 250 V---VTA--KLLG--FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 1165 ---------QAAPRV----------IDTKQKI------VLGVDRLDYTKGLVHRNE---- 1195
+A P ++ + + + + + + N
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 1196 ---LFILKGMGTLITEDGDD--VL--PTTMQPVTLEDFDEYLSKNELFILKGMGTLITED 1248
+ I +L+ +G V+ P P +L + L K +
Sbjct: 363 GKQVEI-----SLV--NGAKNLVVSGP----PQSLYGLNLTLRKAK-----------APS 400
Query: 1249 GDD----------------VLPTT-------MQPVTLEDFDEYLSKNELFI----LKGMG 1281
G D LP + P + + ++ L KN + ++
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS-DLINKDLVKNNVSFNAKDIQ--- 456
Query: 1282 TLI----TEDGDD-------VLPT-----TMQPVTLEDFDEYLSKNELFIL-------KG 1318
I T DG D + PV ++ IL G
Sbjct: 457 --IPVYDTFDGSDLRVLSGSISERIVDCIIRLPV---KWETTTQFKATHILDFGPGGASG 511
Query: 1319 MGTLITE--DG---DDVLPTTMQPVTLEDFDEYLSK 1349
+G L DG ++ T+ D+Y K
Sbjct: 512 LGVLTHRNKDGTGVRVIVAGTLDI---NPDDDYGFK 544
Score = 50.0 bits (119), Expect = 6e-06
Identities = 98/655 (14%), Positives = 193/655 (29%), Gaps = 236/655 (36%)
Query: 537 SAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFK 596
+Q+ ++F + + A ++ + LV KF
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELV----------------------GKF- 64
Query: 597 LGFFLHIPFPPWDIFRLFPWS-----DEILQGMLGCDMVGFHIEDYCLNFVDCCQRRLGC 651
LG+ + L S D++L L E+ L D
Sbjct: 65 LGY----------VSSLVEPSKVGQFDQVLNLCLT------EFENCYLEGND-------- 100
Query: 652 RVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGL 711
+ H +A +L Q + ++++ +Y
Sbjct: 101 -I--------HA----------LA------AKLLQENDTTLVKTKELI-----KNYITAR 130
Query: 712 IESIRNSIAIPYERFVQ--LAQAAPRVIDTKQKIVL-----GVDRLDYTKGLVHRLKAF- 763
I + R P+++ L +A + ++V G + DY + L + +
Sbjct: 131 IMAKR-----PFDKKSNSALFRAVG---EGNAQLVAIFGGQG-NTDDYFEELRDLYQTYH 181
Query: 764 ---ETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNW---- 816
L++ E L ++ + + D ++ + ++ ++ + TP+
Sbjct: 182 VLVGDLIKFSAETLSEL------IRTTLDAEKV--FTQGLN-ILEWLENPSNTPDKDYLL 232
Query: 817 -SPIRY--IYGCISQDELASFYRDAAVALVTP--LRD---GMNLVAKEFVACQINEPPGV 868
PI I + Q LA + A + TP LR G ++ V
Sbjct: 233 SIPISCPLI--GVIQ--LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT--------A 280
Query: 869 LIVSPFAGAGEQMHEALICNPYEIDAAAEVIFCPYLGMNLVAKEFVACQ-----INEPPG 923
+ ++ + E + + A V+F ++G V C + PP
Sbjct: 281 VAIAE-TDSWESFFVS-------VRKAITVLF--FIG--------VRCYEAYPNTSLPPS 322
Query: 924 VLIVSPFAGAG-------------EQMHEALI--CNPYEIDAAAEVIHRALT-------- 960
+L S G EQ+ + + N + A + + +L
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSHL--PAGKQVEISLVNGAKNLVV 379
Query: 961 --MPEDERTLRMNYLRKREKVHDVN------------YWMR----------SFLKGMGTL 996
P+ L + LRK + ++ + R L L
Sbjct: 380 SGPPQSLYGLNLT-LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 997 ITEDGDDVLPTTLIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGKASLGLL 1056
I +D + N+ F + IP ++ F SD L+ + G S ++
Sbjct: 439 INKD----------LVKNNVSFN-AKDIQIP-----VYDTFDGSD--LRVLSGSISERIV 480
Query: 1057 SWLCNTIKNIAD-EQNLKFKLGFFLHI-PFPPWDIFRLFPWSDEILQGMLGCDMV 1109
+ + E +FK HI F P L + G G ++
Sbjct: 481 DCII---RLPVKWETTTQFKA---THILDFGPGGASGLGVLTHRNKDG-TGVRVI 528
Score = 47.7 bits (113), Expect = 3e-05
Identities = 58/307 (18%), Positives = 92/307 (29%), Gaps = 116/307 (37%)
Query: 20 GTLEDFDEYLSK------YIG-----TTNKLAL---LLDYDGTLAPIAPHPDMAVLPEET 65
+ E F + K +IG +L +L+ P P M + T
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLSISNLT 345
Query: 66 KRTLQKL-----ANLP---DVHISIISGRNVHNVMEMVGIEG----LTYAGNHGLEIIH- 112
+ +Q ++LP V IS+++G + V + G L Y N L
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAK-NLV-----VSGPPQSL-YGLNLTLRKAKA 398
Query: 113 PDG---SRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSYYNGCCNGTFWPL--- 166
P G SR IP F + K+ + F P+
Sbjct: 399 PSGLDQSR----IP--FS----------ERKLKFSN----------------RFLPVASP 426
Query: 167 FHS--MPDRAMFCAEHWRAYAQVNQEFADKTI----KALQILAQEEPADSGTPLVWIHD- 219
FHS + A +N++ + K +QI P+ D
Sbjct: 427 FHSHLLVP----------ASDLINKDLVKNNVSFNAKDIQI-----------PVYDTFDG 465
Query: 220 YHL-MLAANTIRNIAD---------EQNLKFKLGFFLHI-PFPPWDIFRLFPWSDEILQG 268
L +L+ + I D E +FK HI F P L + G
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKA---THILDFGPGGASGLGVLTHRNKDG 522
Query: 269 MLGCDMV 275
G ++
Sbjct: 523 -TGVRVI 528
Score = 47.7 bits (113), Expect = 3e-05
Identities = 57/345 (16%), Positives = 96/345 (27%), Gaps = 138/345 (40%)
Query: 254 DIFRLFP-----W--SDEILQGMLGCDMVGFHIEDYCLNFVDCCQRRLGCRVDRKNLLVE 306
D+++ W +D + D GF I D +N + NL +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFK-----DTYGFSILDIVIN-------------NPVNLTIH 1675
Query: 307 HGG-RTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFET 365
GG + RIR A+ +E V ++ + YT F
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE-----INEHSTSYT---------FR- 1720
Query: 366 LLEKHPEHLEKVT--------LLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWS 417
+ L T L++ A ++DLK +
Sbjct: 1721 ----SEKGLLSATQFTQPALTLMEKAA--------FEDLKSK------------------ 1750
Query: 418 PIRYIYGCISQDELASF-------YRDAA-VAL--VTPLRDGMNLVAK--EFVACQINEP 465
G I D A+F Y AA +L V + + +V + +
Sbjct: 1751 ------GLIPAD--ATFAGHSLGEY--AALASLADVMSIESLVEVVFYRGMTMQVAV--- 1797
Query: 466 PGVLIVSPFAGAGEQMHEALICNPYEI------DAAAEVIHRALTMPEDERTLRM----N 515
P G + + NP + +A V+ R +RT + N
Sbjct: 1798 -------PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV-----GKRTGWLVEIVN 1845
Query: 516 YLRKREKHMNCPG-QSSLGGNTSA---YAQVNQEFADKTIKALQI 556
Y N Q G+ A V + I +++
Sbjct: 1846 Y--------NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 42.7 bits (100), Expect = 0.001
Identities = 39/256 (15%), Positives = 70/256 (27%), Gaps = 109/256 (42%)
Query: 741 QKIVLGVDRLDY---TKGLVHRLKAFETLLEK-------HPEHLEKVT--------LLQI 782
++I + + G + K F+ + E + L T L++
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 783 AVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASF-------Y 835
A ++DLK + G I D A+F Y
Sbjct: 1742 AA--------FEDLKSK------------------------GLIPAD--ATFAGHSLGEY 1767
Query: 836 RDAA-VAL--VTPLRDGMNLVAK--EFVACQINEPPGVLIVSPFAGAGEQMHEALICNPY 890
AA +L V + + +V + + P G + + NP
Sbjct: 1768 --AALASLADVMSIESLVEVVFYRGMTMQVAV----------PRDELGRSNYGMIAINPG 1815
Query: 891 EI------DAAAEVIFCPYLGMNLVAKE--FVACQI---NEPPGVLIVSPFAGAGEQMHE 939
+ +A V+ V K ++ +I N + AG+
Sbjct: 1816 RVAASFSQEALQYVV-------ERVGKRTGWL-VEIVNYNVENQQYVA-----AGDL--R 1860
Query: 940 ALICNPYEIDAAAEVI 955
AL D V+
Sbjct: 1861 AL-------DTVTNVL 1869
Score = 36.2 bits (83), Expect = 0.11
Identities = 69/401 (17%), Positives = 120/401 (29%), Gaps = 119/401 (29%)
Query: 1137 LLVEHGGRTVRIRPLPIAIPY------ERFVQLAQAAPRVI----DTKQKIVLGVDRLDY 1186
L + HG + +P A + E+F ++ + L L Y
Sbjct: 9 LTLSHGSLEHVL-LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 1187 TKGLVHRNELFILKGMGTLITEDGDDVLPTTMQPVTLEDFD-EYLSKNEL--FILKGMGT 1243
LV ++ D VL L +F+ YL N++ K
Sbjct: 68 VSSLVEPSK-----------VGQFDQVLNLC-----LTEFENCYLEGNDIHALAAK---- 107
Query: 1244 LITEDGDDVLPTTMQPV--------TLEDFDEYLSKNELF--ILKGMGTLITEDGDDVLP 1293
+ ++ D L T + + + + S + LF + +G L+ G
Sbjct: 108 -LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG---- 162
Query: 1294 TTMQPVTLEDFDE-------YLSKNELFILKGMGTLI-----TEDGDDVLPTTMQPVT-L 1340
Q T + F+E Y I TL T D + V + + L
Sbjct: 163 ---QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 1341 EDFD-----EYLSKNEL---LI-----------LKGMGTL----------ITEDGDDVLP 1371
E+ +YL + LI K +G T ++
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 1372 TTM--QPVTLEDFDEYLSK------YIG-----TTNKLAL---LLDYDGTLAPIAPHPDM 1415
+ + E F + K +IG +L +L+ P P M
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-M 338
Query: 1416 AVLPEETKRTLQKL-----ANLP---DVHISIISGRNVHNV 1448
+ T+ +Q ++LP V IS+++G V
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Score = 33.5 bits (76), Expect = 0.63
Identities = 49/305 (16%), Positives = 89/305 (29%), Gaps = 113/305 (37%)
Query: 1200 KGMGTLITEDGDDVLPTTMQ-----PV---TLEDFDEYLSKNELF-ILKGMGTLITEDGD 1250
+GMG M D + F IL I +
Sbjct: 1629 QGMG--------------MDLYKTSKAAQDVWNRADNHFKDTYGFSILD-----IVINN- 1668
Query: 1251 DVLPTTMQPVTLEDFDEYLSKNELFILKGMGTLITEDGDDVLPTTMQPVTLEDFDEYLSK 1310
P + T+ F K I + +I E D T + + ++ +E+ +
Sbjct: 1669 ---PVNL---TIH-FGGEKGKR---IRENYSAMIFETIVDGKLKT-EKI-FKEINEHSTS 1716
Query: 1311 NELFILKGMGTLITEDGDDVLPTTM--QP--VTLEDFDEYLSKNELLILKGMGTLITED- 1365
+L T QP +E + E L KG LI D
Sbjct: 1717 -----------YTFRSEKGLLSATQFTQPALTLME-----KAAFEDLKSKG---LIPADA 1757
Query: 1366 -------GD--------DVLPTTMQPVTLEDFDEYLSKYIGTTNKLALLLDYDGT----L 1406
G+ DV+ +E E + Y G T ++A+ D G +
Sbjct: 1758 TFAGHSLGEYAALASLADVMS-------IESLVE-VVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 1407 APIAPHPDMAVLPEETKRTL-QKLA------------NLPDVHISIISGRNVHNVMEMVG 1453
I P A +E + + +++ N+ + + +G ++
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY-VAAG-------DLRA 1861
Query: 1454 IEGLT 1458
++ +T
Sbjct: 1862 LDTVT 1866
Score = 31.2 bits (70), Expect = 3.4
Identities = 30/221 (13%), Positives = 62/221 (28%), Gaps = 75/221 (33%)
Query: 449 GMNL-----VAKE--------------FVACQI-NEPPGVLIVSPFAGA-GEQMHEALIC 487
GM+L A++ F I P L + F G G+++ E
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH-FGGEKGKRIRENYSA 1690
Query: 488 NPYEIDAAAEVIHRALTMPEDERTLRMNY------LRK-------------------REK 522
+E ++ + +E + + L + K
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 523 HMNCPGQS-----SLGGNT--SAYAQVNQEFADKTIKAL----QILAQEEPADSGTPLVW 571
P + SLG ++ A V ++ + + P D
Sbjct: 1751 G-LIPADATFAGHSLGEYAALASLADVM-SIES-LVEVVFYRGMTMQVAVPRDELG---- 1803
Query: 572 IHDYHLMLAAN--TIRNIADEQNLKF-------KLGFFLHI 603
+ M+A N + ++ L++ + G+ + I
Sbjct: 1804 -RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 54.3 bits (131), Expect = 2e-07
Identities = 39/248 (15%), Positives = 71/248 (28%), Gaps = 52/248 (20%)
Query: 292 RRLGCRVDR--------KNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRV------I 337
R++G VD G LP + +RF
Sbjct: 135 RKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGF 194
Query: 338 DTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLK 397
++ RL KG +KA ++ P+ LL + L+
Sbjct: 195 TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPD----AQLLIVGSGR-----YESTLR 245
Query: 398 EEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD-------GM 450
+ + +F G + ++ + A + + G+
Sbjct: 246 RLATDVSQNV--KFL-----------GRLEYQDMINTLAAADIFAMPARTRGGGLDVEGL 292
Query: 451 NLVAKEFVACQINEPPGV-LIVSPFAGAGEQMHEA--LICNPYEIDAAAEVIHRALTMPE 507
+V E AC GV +I GA E + A L+ ++D +E++ L P
Sbjct: 293 GIVYLEAQAC------GVPVIAGTSGGAPETVTPATGLVVEGSDVDKLSELLIELLDDPI 346
Query: 508 DERTLRMN 515
+
Sbjct: 347 RRAAMGAA 354
Score = 38.1 bits (89), Expect = 0.022
Identities = 26/214 (12%), Positives = 48/214 (22%), Gaps = 69/214 (32%)
Query: 647 RRLGCRVDR--------KNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKI 698
R++G VD G LP + +RF
Sbjct: 135 RKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKS-------- 186
Query: 699 VLGVDRLDYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVH 758
+ R + V + RL KG
Sbjct: 187 ---------------ATRKKLGFTDTTPV----------------IACNSRLVPRKGQDS 215
Query: 759 RLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP 818
+KA ++ P+ LL + L+ + + +F
Sbjct: 216 LIKAMPQVIAARPD----AQLLIVGSGR-----YESTLRRLATDVSQNV--KFL------ 258
Query: 819 IRYIYGCISQDELASFYRDAAVALVTPLRDGMNL 852
G + ++ + A + + G L
Sbjct: 259 -----GRLEYQDMINTLAAADIFAMPARTRGGGL 287
Score = 34.2 bits (79), Expect = 0.35
Identities = 13/79 (16%), Positives = 19/79 (24%), Gaps = 14/79 (17%)
Query: 1126 RRLGCRVDR--------KNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRV------I 1171
R++G VD G LP + +RF
Sbjct: 135 RKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGF 194
Query: 1172 DTKQKIVLGVDRLDYTKGL 1190
++ RL KG
Sbjct: 195 TDTTPVIACNSRLVPRKGQ 213
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 53.9 bits (130), Expect = 2e-07
Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 40/240 (16%)
Query: 296 CRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRV-------IDTKQKIVLGVD 348
+ + R + LP I +R R I +Q ++L V
Sbjct: 144 TDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVG 203
Query: 349 RLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRIN 408
KG+ ++A +L E TLL + + +++ L E++ + +
Sbjct: 204 SDFGRKGVDRSIEALASLPESLRH----NTLLFVVGQDKPR--KFEALAEKLG-VRSNV- 255
Query: 409 GRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGV 468
F + +++++ A + L ++ +V E + G+
Sbjct: 256 -HFFSG-------------RNDVSELMAAADLLLHPAYQEAAGIVLLEAITA------GL 295
Query: 469 -LIVSPFAGAGEQMHEA----LICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKH 523
++ + G + +A +I P+ + EV+ +ALT N +
Sbjct: 296 PVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQ 355
Score = 47.7 bits (114), Expect = 2e-05
Identities = 33/257 (12%), Positives = 79/257 (30%), Gaps = 53/257 (20%)
Query: 661 EHGGRTVRIRPLPIAIPYERFVQLAQAAPRVI----DTKQKIV--LGVDRLDYTKGLIES 714
E G +ER + +++ + +
Sbjct: 110 EKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEP-----ERFQI 164
Query: 715 IRNSIAIPYERFVQLAQAAPRV-------IDTKQKIVLGVDRLDYTKGLVHRLKAFETLL 767
+ I +R R I +Q ++L V KG+ ++A +L
Sbjct: 165 LPPGIYP--DRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLP 222
Query: 768 EKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCIS 827
E TLL + + +++ L E++ + + F +
Sbjct: 223 ESLRH----NTLLFVVGQDKPR--KFEALAEKLG-VRSNV--HFFSG------------- 260
Query: 828 QDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGV-LIVSPFAGAGEQMHEA-- 884
+++++ A + L ++ +V E + G+ ++ + G + +A
Sbjct: 261 RNDVSELMAAADLLLHPAYQEAAGIVLLEAITA------GLPVLTTAVCGYAHYIADANC 314
Query: 885 --LICNPYEIDAAAEVI 899
+I P+ + EV+
Sbjct: 315 GTVIAEPFSQEQLNEVL 331
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 51.5 bits (124), Expect = 1e-06
Identities = 42/218 (19%), Positives = 68/218 (31%), Gaps = 40/218 (18%)
Query: 655 RKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVI----DTKQKIVLGVDRLDYTKG 710
+ + + R E+ QL A + + Q ++ D
Sbjct: 159 KNSYRDDSDTPESEAR-----RICEQ--QLVDNADVLAVNTQEEMQDLM---HHYDADPD 208
Query: 711 LIESIRNSIAIPYERFVQLAQAAPRV------IDTKQKIVLGVDRLDYTKGLVHRLKAFE 764
I + + E + A I K+V V RL KG +KA
Sbjct: 209 RISVVSPGADV--ELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVA 266
Query: 765 TLLEKHPEHLEKVTLLQIAVPS--RTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI 822
L ++ P+ + ++ PS Y+ + EE+ + RI RF
Sbjct: 267 ALFDRDPDR--NLRVIICGGPSGPNATPDTYRHMAEELG-VEKRI--RFL---------- 311
Query: 823 YGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVAC 860
EL + YR A + V + LVA E A
Sbjct: 312 -DPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQAS 348
Score = 51.5 bits (124), Expect = 1e-06
Identities = 50/247 (20%), Positives = 81/247 (32%), Gaps = 43/247 (17%)
Query: 290 CQRRLGCRVDR--------KNLLVEHGGRTV-RIRPLPIAIPYERFVQLAQAAPRV---- 336
C+++L D L+ H RI + E + A
Sbjct: 177 CEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRE 236
Query: 337 --IDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPS--RTDVKE 392
I K+V V RL KG +KA L ++ P+ + ++ PS
Sbjct: 237 LGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDR--NLRVIICGGPSGPNATPDT 294
Query: 393 YQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNL 452
Y+ + EE+ + RI RF EL + YR A + V + L
Sbjct: 295 YRHMAEELG-VEKRI--RFL-----------DPRPPSELVAVYRAADIVAVPSFNESFGL 340
Query: 453 VAKEFVACQINEPPGV-LIVSPFAGAGEQMHE---ALICNPYEIDAAAEVIHRALTMPED 508
VA E A G +I + G + E L+ + + A A+ + L E
Sbjct: 341 VAMEAQAS------GTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDET 394
Query: 509 ERTLRMN 515
+ +
Sbjct: 395 RIRMGED 401
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 50.1 bits (120), Expect = 4e-06
Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 24/175 (13%)
Query: 337 IDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDL 396
+D ++ I+ V R D KG+ ++ + + EK P V LL + V + D + +
Sbjct: 227 VDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPG----VQLLLVGVMAHDDPEGWIYF 282
Query: 397 KEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKE 456
++ + ++ + + + E+ +F R + V L +R+G L E
Sbjct: 283 EKTLRKIGEDYDVKV--------LTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTE 334
Query: 457 FVACQINEPPGV-LIVSPFAGAGEQMHEA---LICNPYEIDAAAEVIHRALTMPE 507
+ G +I G Q+ + + + A EV+ L PE
Sbjct: 335 AMWK------GKPVIGRAVGGIKFQIVDGETGFLVRD--ANEAVEVVLYLLKHPE 381
Score = 49.3 bits (118), Expect = 6e-06
Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 18/155 (11%)
Query: 712 IESIRNSIAIPYERFVQLAQAAPRV------IDTKQKIVLGVDRLDYTKGLVHRLKAFET 765
+ SI E+ V+L Q +D ++ I+ V R D KG+ ++ +
Sbjct: 196 AVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRK 255
Query: 766 LLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGC 825
+ EK P V LL + V + D + + ++ + ++ + +
Sbjct: 256 VKEKIPG----VQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKV--------LTNLIG 303
Query: 826 ISQDELASFYRDAAVALVTPLRDGMNLVAKEFVAC 860
+ E+ +F R + V L +R+G L E +
Sbjct: 304 VHAREVNAFQRASDVILQMSIREGFGLTVTEAMWK 338
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 49.4 bits (118), Expect = 8e-06
Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 28/208 (13%)
Query: 313 RIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPE 372
+ + + + ++ RLD K ++A+ E +
Sbjct: 234 VFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDK 293
Query: 373 HLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRI-----NGRFTTPNWSPIRYIYGCIS 427
+TL I P + Q+ KE + +++ I G+ + S
Sbjct: 294 ANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMF---------PLNS 344
Query: 428 QDELASFYRDAA----VALVTPLRDGMNLVAKEFVACQINEPPGV-LIVSPFAGAGEQM- 481
Q ELA Y A V +T + L E +A G+ +V+ G E +
Sbjct: 345 QQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMAS------GLPAVVTRNGGPAEILD 398
Query: 482 --HEALICNPYEIDAAAEVIHRALTMPE 507
++ +P + + A + +A E
Sbjct: 399 GGKYGVLVDPEDPEDIARGLLKAFESEE 426
Score = 45.9 bits (109), Expect = 8e-05
Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 24/153 (15%)
Query: 701 GVDRLDYTKGLIESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRL 760
GV+ + + I+ I ER + ++ RLD K +
Sbjct: 229 GVNTRVFDGEYGDKIKAKITKYLERD-------LGSERMELPAIIASSRLDQKKNHYGLV 281
Query: 761 KAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRI-----NGRFTTPN 815
+A+ E + +TL I P + Q+ KE + +++ I G+ +
Sbjct: 282 EAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMF- 340
Query: 816 WSPIRYIYGCISQDELASFYR---DAAVALVTP 845
SQ ELA Y
Sbjct: 341 --------PLNSQQELAGCYAYLASKGSVFALT 365
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 47.3 bits (113), Expect = 3e-05
Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 36/222 (16%)
Query: 301 KNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPR---VIDTKQKIVLGVDRLDYTKGLV 357
N E I+ + I + + + I +KI++ + K +
Sbjct: 168 INETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQ 227
Query: 358 HRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWS 417
++AF ++ + LL + D E+ + + + L I R
Sbjct: 228 DVVQAFAKIVTEVD-----AKLLLVG-----DGPEFCTILQLVKNL--HIEDRV------ 269
Query: 418 PIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGV-LIVSPFAG 476
G QD +A + + L+ ++ LV E +AC GV I + G
Sbjct: 270 ---LFLG--KQDNVAELLAMSDLMLLLSEKESFGLVLLEAMAC------GVPCIGTRVGG 318
Query: 477 AGEQMHE---ALICNPYEIDAAAEVIHRALTMPEDERTLRMN 515
E + +C + A+ + L E R +
Sbjct: 319 IPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGER 360
Score = 38.8 bits (91), Expect = 0.010
Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 30/202 (14%)
Query: 662 HGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLIESIRNSIAI 721
HG + P RF + + V ++ L I+++ N I
Sbjct: 133 HGTDITVLGSDPSLNNLIRF--GIEQSDVVTAVSHSLINETHELVKPNKDIQTVYN--FI 188
Query: 722 PYERFVQLAQAAPR---VIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVT 778
+ + + I +KI++ + K + ++AF ++ +
Sbjct: 189 DERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTEVD-----AK 243
Query: 779 LLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDA 838
LL + D E+ + + + L I R G QD +A +
Sbjct: 244 LLLVG-----DGPEFCTILQLVKNL--HIEDRV---------LFLG--KQDNVAELLAMS 285
Query: 839 AVALVTPLRDGMNLVAKEFVAC 860
+ L+ ++ LV E +AC
Sbjct: 286 DLMLLLSEKESFGLVLLEAMAC 307
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 45.7 bits (109), Expect = 9e-05
Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 53/234 (22%)
Query: 291 QRRLGCRVDR--------KNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQK 342
R ++ + +E G +P + F + +
Sbjct: 154 LRPYHEKIIGRIAVSDLARRWQMEALG--SDAVEIPNGVDVASFADAPLLDGYPREGR-- 209
Query: 343 IVLGVDRLDYT-KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMD 401
VL + R D KG+ L A L+ + P+ V +L + + +L+E+
Sbjct: 210 TVLFLGRYDEPRKGMAVLLAALPKLVARFPD----VEILIVGRG------DEDELREQAG 259
Query: 402 QLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD-GMNLVAKEFVAC 460
L G + RF G + AS R A V L +V E +A
Sbjct: 260 DLAGHL--RFL-----------GQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAA 306
Query: 461 QINEPPGVLIVSPFAGA-------GEQMHEALICNPYEIDAAAEVIHRALTMPE 507
G +V+ A G+ + + D A + L +
Sbjct: 307 ------GTAVVASDLDAFRRVLADGD---AGRLVPVDDADGMAAALIGILEDDQ 351
Score = 37.3 bits (87), Expect = 0.032
Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 27/139 (19%)
Query: 724 ERFVQLAQAAPRVIDTKQKIVLGVDRLDYT-KGLVHRLKAFETLLEKHPEHLEKVTLLQI 782
F + + VL + R D KG+ L A L+ + P+ V +L +
Sbjct: 193 ASFADAPLLDGYPREGR--TVLFLGRYDEPRKGMAVLLAALPKLVARFPD----VEILIV 246
Query: 783 AVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVAL 842
+ +L+E+ L G + RF G + AS R A V
Sbjct: 247 GRG------DEDELREQAGDLAGHL--RFL-----------GQVDDATKASAMRSADVYC 287
Query: 843 VTPLRD-GMNLVAKEFVAC 860
L +V E +A
Sbjct: 288 APHLGGESFGIVLVEAMAA 306
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 43.3 bits (101), Expect = 4e-04
Identities = 36/283 (12%), Positives = 75/283 (26%), Gaps = 36/283 (12%)
Query: 309 GRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLE 368
G V I + + + + + L ++R K L + A +
Sbjct: 152 GCKVPINIVSHFVDTKTIYDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFIS 211
Query: 369 KHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQ 428
K+P + + DL + + + + I ++
Sbjct: 212 KYP----DAKVRFLCNSHHES---KFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTD 264
Query: 429 DELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGV-LIVSPFAGAGEQMHE--AL 485
+ + Y V + +G L + E G LI+S GA +
Sbjct: 265 ERVDMMYNACDVIVNCSSGEGFGLCSAEGAVL------GKPLIISAVGGADDYFSGDCVY 318
Query: 486 ICNPYEIDAAAEVIHRALTMPE---DERTLRMNYLRKREKHMNCPGQSSLGGNTSAYAQV 542
P + + D+ + + + G V
Sbjct: 319 KIKPSAWISVDDRDGIGGIEGIIDVDDLVEAFTFFKDEKNR------KEYGKR--VQDFV 370
Query: 543 NQEF-----ADKTIK----ALQILAQEEPADSGTPLVWIHDYH 576
+ + I L++ ++E P + PL H +H
Sbjct: 371 KTKPTWDDISSDIIDFFNSLLRVESRETPGNEEHPLEHHHHHH 413
Score = 37.1 bits (85), Expect = 0.036
Identities = 22/163 (13%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 738 DTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLK 797
+ L ++R K L + A + K+P + + DL
Sbjct: 181 YNDDVLFLNMNRNTARKRLDIYVLAAARFISKYP----DAKVRFLCNSHHES---KFDLH 233
Query: 798 EEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEF 857
+ + + + I ++ + + Y V + +G L + E
Sbjct: 234 SIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEG 293
Query: 858 VACQINEPPGV-LIVSPFAGAGEQMHE--ALICNPYEIDAAAE 897
G LI+S GA + P + +
Sbjct: 294 AVL------GKPLIISAVGGADDYFSGDCVYKIKPSAWISVDD 330
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar
donar complex rossmann fold, GT-B fold,
glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A
{Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Length = 816
Score = 40.0 bits (93), Expect = 0.007
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 30/160 (18%)
Query: 701 GVDRLDYTKGL-----IESIRNSIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKG 755
G D Y + + I V+ + + D K+ I+ + RLD K
Sbjct: 527 GADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKN 586
Query: 756 LVHRLKAFETLLEKHPEHLEKVTLLQIAV-------PSRTDVKEYQDLKEEMDQLVGRIN 808
L ++ + L + + E + + + +++ ++N
Sbjct: 587 LSGLVEWYGKNTRLREL-----ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEY--KLN 639
Query: 809 GRFTTPNWSPIRYIYGCISQDELASFYR---DAAVALVTP 845
G+ R+I + + YR D A V P
Sbjct: 640 GQ--------FRWISSQMDRVRNGELYRYICDTKGAFVQP 671
Score = 38.4 bits (89), Expect = 0.019
Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 38/224 (16%)
Query: 307 HGGRTVRIRPLPIAIPYERFVQLAQAAPRVI--DTKQKIVLGVDRLDYTKGLVHRLKAFE 364
+ R+ I + + + D K+ I+ + RLD K L ++ +
Sbjct: 536 YTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYG 595
Query: 365 TLLEKHPEHLEKVTLLQIAV-------PSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWS 417
L + + E + + + +++ ++NG+
Sbjct: 596 KNTRLREL-----ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEY--KLNGQ------- 641
Query: 418 PIRYIYGCISQDELASFYRDAA----VALVTPLRDGMNLVAKEFVACQINEPPGV-LIVS 472
R+I + + YR + L + L E + C G+ +
Sbjct: 642 -FRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTC------GLPTFAT 694
Query: 473 PFAGAGEQM---HEALICNPYEIDAAAEVIHRALTMPEDERTLR 513
G E + +PY D AA+ + T +++ +
Sbjct: 695 CKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHW 738
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 38.4 bits (88), Expect = 0.010
Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 11/162 (6%)
Query: 38 KLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGI 97
++ LL D DGTL P +E + +++ + + G + +E +G
Sbjct: 4 RVLLLFDVDGTLT-----PPRLCQTDEMRALIKRARG-AGFCVGTVGGSDFAKQVEQLGR 57
Query: 98 EGLTYA----GNHGLEIIHPDGSRFVHPIPTEF-EDKVSDLLKTLQEKVMSVHIDPKIFD 152
+ LT +GL + D++ +K + + I +
Sbjct: 58 DVLTQFDYVFAENGLLAYRNGLEIHRQSLLNALGNDRIVKFVKKTLRLIADLDIPVQRGT 117
Query: 153 SYYNGCCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADK 194
P+ + E + +V +
Sbjct: 118 FVEYRNGMINVSPIGRNCSQAERDEFEVYDNEHRVRASLIAE 159
Score = 32.2 bits (72), Expect = 1.1
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 1395 KLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGI 1454
++ LL D DGTL P +E + +++ + + G + +E +G
Sbjct: 4 RVLLLFDVDGTLT-----PPRLCQTDEMRALIKRARG-AGFCVGTVGGSDFAKQVEQLGR 57
Query: 1455 E 1455
+
Sbjct: 58 D 58
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
genomics, PSI, protein struct initiative; 1.80A
{Archaeoglobus fulgidus} SCOP: c.87.1.8
Length = 177
Score = 36.8 bits (86), Expect = 0.019
Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 44/203 (21%)
Query: 309 GRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLE 368
G P+ +F L V+R+ K + +L+ F+
Sbjct: 2 GHHHHHHSHPVET--SKFK---------FKCYGDFWLSVNRIYPEKRIELQLEVFK---- 46
Query: 369 KHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQ 428
L+ L + S + ++ ++ N ++++ G +S+
Sbjct: 47 ----KLQDEKLYIVGWFS--KGDHAERYARKIMKIAP--------DN---VKFL-GSVSE 88
Query: 429 DELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGV-LIVSPFAGAGEQMHEA--- 484
+EL Y L T + L E +A G +I G E +
Sbjct: 89 EELIDLYSRCKGLLCTAKDEDFGLTPIEAMAS------GKPVIAVNEGGFKETVINEKTG 142
Query: 485 LICNPYEIDAAAEVIHRALTMPE 507
+ N +++ + + + P+
Sbjct: 143 YLVNA-DVNEIIDAMKKVSKNPD 164
Score = 31.4 bits (72), Expect = 1.1
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 22/124 (17%)
Query: 737 IDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDL 796
L V+R+ K + +L+ F+ L+ L + S +
Sbjct: 19 FKCYGDFWLSVNRIYPEKRIELQLEVFK--------KLQDEKLYIVGWFS--KGDHAERY 68
Query: 797 KEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKE 856
++ ++ N ++++ G +S++EL Y L T + L E
Sbjct: 69 ARKIMKIAP--------DN---VKFL-GSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIE 116
Query: 857 FVAC 860
+A
Sbjct: 117 AMAS 120
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex,
protein glycosyl carbohydrate-deficient glycoprotein
syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP:
c.108.1.10 PDB: 2fuc_A*
Length = 262
Score = 37.6 bits (86), Expect = 0.020
Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 13/125 (10%)
Query: 38 KLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGI 97
++ L D DGTL P + E LQKL + V I ++ G + + E +G
Sbjct: 13 RVLCLFDVDGTLT-----PARQKIDPEVAAFLQKLRS--RVQIGVVGGSDYCKIAEQLGD 65
Query: 98 ------EGLTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIF 151
+ +G I +++ L M++ PK
Sbjct: 66 GDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKR 125
Query: 152 DSYYN 156
++
Sbjct: 126 GTFIE 130
Score = 34.2 bits (77), Expect = 0.26
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 1395 KLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVG 1453
++ L D DGTL P + E LQKL + V I ++ G + + E +G
Sbjct: 13 RVLCLFDVDGTLT-----PARQKIDPEVAAFLQKLRS--RVQIGVVGGSDYCKIAEQLG 64
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann
fold, glycosyltransferase, transferase; 1.50A
{Helicobacter pylori}
Length = 166
Score = 36.4 bits (85), Expect = 0.022
Identities = 21/185 (11%), Positives = 52/185 (28%), Gaps = 36/185 (19%)
Query: 344 VLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAV--PSRTDVKEYQDLKEEMD 401
+ V R K +KA K L + P K+ + L +++
Sbjct: 5 IAMVGRYSNEKNQSVLIKAVALSKYKQDIVLL------LKGKGPDE---KKIKLLAQKLG 55
Query: 402 QLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQ 461
+ F ++ +EL + + + + + E ++
Sbjct: 56 -VKAEF--GF--------------VNSNELLEILKTCTLYVHAANVESEAIACLEAISVG 98
Query: 462 INEPPGVLIVSPFAGAGEQM---HEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLR 518
I P +++ + + E + P + I L + ++ Y +
Sbjct: 99 I--VP---VIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNEYAK 153
Query: 519 KREKH 523
+
Sbjct: 154 SALNY 158
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 36.7 bits (85), Expect = 0.045
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 43 LDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEGLTY 102
D+D T P E + L++ + ++ I ++G ++ ++++ +G Y
Sbjct: 27 CDFDETYFPHTIDEQKQQDIYELEDYLEQKSKDGELIIGWVTGSSIESILDKMGRGKFRY 86
Query: 103 AGNH-----GLEIIHPDGSRFVHP-------IPTEFE-DKVSDLLKTLQEK-VMSVHIDP 148
+ G EI + F I F +KV L+K L E + ++
Sbjct: 87 FPHFIASDLGTEITYFSEHNFGQQDNKWNSRINEGFSKEKVEKLVKQLHENHNILLNPQT 146
Query: 149 KIFDSYY 155
++ S Y
Sbjct: 147 QLGKSRY 153
Score = 31.7 bits (72), Expect = 1.5
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 1400 LDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEGLTY 1459
D+D T P E + L++ + ++ I ++G ++ ++++ +G Y
Sbjct: 27 CDFDETYFPHTIDEQKQQDIYELEDYLEQKSKDGELIIGWVTGSSIESILDKMGRGKFRY 86
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 36.3 bits (85), Expect = 0.050
Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 40 ALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGR---NVHNVMEMVG 96
A+ +D DGT+ +P+ + E+ +++ +L + I +++G ++G
Sbjct: 5 AISIDIDGTIT----YPNRMI-HEKALEAIRRAESL-GIPIMLVTGNTVQFAEAASILIG 58
Query: 97 IEGLTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFD 152
G G I + F+ + E +++ K S + +
Sbjct: 59 TSG-PVVAEDGGAISYKKKRIFLASMDEE-WILWNEIRKRFPNARTSYTMPDRRAG 112
Score = 31.7 bits (73), Expect = 1.2
Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 1397 ALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGR---NVHNVMEMVG 1453
A+ +D DGT+ +P+ + E+ +++ +L + I +++G ++G
Sbjct: 5 AISIDIDGTIT----YPNRMI-HEKALEAIRRAESL-GIPIMLVTGNTVQFAEAASILIG 58
Query: 1454 IEG 1456
G
Sbjct: 59 TSG 61
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310,
phosphatase, PFAM PF03332, H superfamily, jaecken
disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB:
2q4r_A
Length = 246
Score = 35.7 bits (81), Expect = 0.069
Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 14/148 (9%)
Query: 41 LLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEGL 100
L D DGTL + +E LQKL + I ++ G + V E +G + +
Sbjct: 9 CLFDVDGTLT-----APRQKITKEMDDFLQKLRQ--KIKIGVVGGSDFEKVQEQLGNDVV 61
Query: 101 TYA----GNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKI---FDS 153
+GL I + + + L ++ PK F
Sbjct: 62 EKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIE 121
Query: 154 YYNGCCNGTFWPLFHSMPDRAMFCAEHW 181
+ NG N + S +R F
Sbjct: 122 FRNGMLNVSPIGRSCSQEERIEFYELDK 149
Score = 31.4 bits (70), Expect = 1.7
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 1398 LLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIE 1455
L D DGTL + +E LQKL + I ++ G + V E +G +
Sbjct: 9 CLFDVDGTLT-----APRQKITKEMDDFLQKLRQ--KIKIGVVGGSDFEKVQEQLGND 59
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan,
membrane-associated proteins; 1.90A {Xanthomonas
campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Length = 406
Score = 34.7 bits (79), Expect = 0.23
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 18/131 (13%)
Query: 403 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLVA-------- 454
++G GR P + +YG + + + + A + P V
Sbjct: 252 VIGSGMGRH--PGYGDNVIVYGEMKHAQTIGYIKHARFGIA-PYASEQVPVYLADSSMKL 308
Query: 455 KEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRM 514
++ G+ V P A G P D+ I +AL P +
Sbjct: 309 LQYDFF------GLPAVCPNAVVGPYKSRFG-YTPGNADSVIAAITQALEAPRVRYRQCL 361
Query: 515 NYLRKREKHMN 525
N+ ++ ++
Sbjct: 362 NWSDTTDRVLD 372
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 34.1 bits (78), Expect = 0.36
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 13/76 (17%)
Query: 922 PGVLIV-------SPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLR 974
G+ +V P +G +H A A I+ L E+ + R
Sbjct: 296 NGMALVGDAACFVDPVFSSG--VHLATYSA----LLVARAINTCLAGEMSEQRCFEEFER 349
Query: 975 KREKVHDVNYWMRSFL 990
+ + + Y
Sbjct: 350 RYRREYGNFYQFLVAF 365
Score = 31.1 bits (70), Expect = 3.3
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 13/67 (19%)
Query: 466 PGVLIV-------SPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLR 518
G+ +V P +G +H A A I+ L E+ + R
Sbjct: 296 NGMALVGDAACFVDPVFSSG--VHLATYSA----LLVARAINTCLAGEMSEQRCFEEFER 349
Query: 519 KREKHMN 525
+ +
Sbjct: 350 RYRREYG 356
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription
FA DNA-binding, nuclear protein, floral asymmetry; 1.9A
{Antirrhinum majus} SCOP: a.4.1.3
Length = 93
Score = 31.0 bits (70), Expect = 0.57
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 361 KAFETLLEKHPEH----LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRI-NGRFTTPN 415
KAFE L + + V AV RT +E + E + + + I +G+ PN
Sbjct: 17 KAFERALAVYDKDTPDRWANV---ARAVEGRT-PEEVKKHYEILVEDIKYIESGKVPFPN 72
Score = 31.0 bits (70), Expect = 0.57
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 761 KAFETLLEKHPEH----LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRI-NGRFTTPN 815
KAFE L + + V AV RT +E + E + + + I +G+ PN
Sbjct: 17 KAFERALAVYDKDTPDRWANV---ARAVEGRT-PEEVKKHYEILVEDIKYIESGKVPFPN 72
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 33.0 bits (76), Expect = 0.64
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 43 LDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEGLTY 102
+D+DGTL +P E +++ +SI +GR+ ++ G E L
Sbjct: 32 IDFDGTLFVDKDI----KVPSENIDAIKEAIEK-GYMVSICTGRSKVGILSAFGEENLKK 86
Query: 103 AGNHGLEII--------HPDGSR-FVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDS 153
+G+ + G I T+ ++L+ L EK + +S
Sbjct: 87 MNFYGMPGVYINGTIVYDQIGYTLLDETIETD---VYAELISYLVEKNLVNQTIFHRGES 143
Query: 154 YY 155
Y
Sbjct: 144 NY 145
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 32.1 bits (74), Expect = 1.1
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
Query: 43 LDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNV--MEMVGIEG- 99
LD DGTL + + + + L+K+ + + I I +GR ++ ++ V +G
Sbjct: 17 LDVDGTLL----SFETHKVSQSSIDALKKVHDS-GIKIVIATGRAASDLHEIDAVPYDGV 71
Query: 100 LTYAGNHGLEIIHPDGSR-FVHPIPTEFEDKVSDLLKTLQ 138
+ G + DGS IP + K +L +
Sbjct: 72 IALNGAE---CVLRDGSVIRKVAIPAQDFRKSMELAREFD 108
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 32.1 bits (73), Expect = 1.3
Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 31/163 (19%)
Query: 922 PGVLI-------VSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLR 974
G+++ V+P G G A+I AA+ I A + + +
Sbjct: 282 NGIIVIGDSGFTVNPVHGGG--KGSAMIS----GYCAAKAILSAFETGDFSASGLWDMNI 335
Query: 975 KREKVHDVNYW-MRSFLKGMGTLITEDGDDVLPTTLIADEQNLKFKLGFFLHIPFPP--- 1030
+ + F + + L +D + + +I +E L+ LH+
Sbjct: 336 CYVNEYGAKQASLDIFRRFLQKLSNDDINYGMKKKIIKEEDLLEASEKGDLHLSVADKAM 395
Query: 1031 ------------WDIFRLFPWSDEILQGML--GKASLGLLSWL 1059
+ + + +I + L ++ L SW
Sbjct: 396 RVISGLGRPSLLFKLKAVAESMKKIKELYLNYPRSPSSLGSWR 438
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 31.3 bits (72), Expect = 1.8
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 43 LDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRN---VHNVMEMVGIEG 99
D DGTL + LP T +++L V+++I +GR +V + +GI+
Sbjct: 8 FDIDGTL--LDEQ---KQLPLSTIEAVRRLKQS-GVYVAIATGRAPFMFEHVRKQLGIDS 61
Query: 100 -LTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQ 138
+++ G + ++ + P+ E +++
Sbjct: 62 FVSFNGQY---VVFEGNVLYKQPLRREKVRALTEEAHKNG 98
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 31.3 bits (72), Expect = 1.8
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 33/134 (24%)
Query: 43 LDYDGTLAPIAPHPDMAVLPEETKRTLQKL-ANLPDVHISIISGRN---VHNVMEMVGIE 98
D DGTL + +P T L+ A + I I +GR ++N+ E+
Sbjct: 7 FDIDGTLV----SFETHRIPSSTIEALEAAHAK--GLKIFIATGRPKAIINNLSELQDRN 60
Query: 99 G----LTYAG----NHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQ--------EKVM 142
+T G E+I + IP E ++ + +
Sbjct: 61 LIDGYITMNGAYCFVGE-EVI------YKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNIS 113
Query: 143 SVHIDPKIFDSYYN 156
+ + +Y+
Sbjct: 114 VCQPNEMVKKIFYD 127
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 31.9 bits (72), Expect = 2.1
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 927 VSPFAGAGEQMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKREKVHDVNYWM 986
P G +H A +AA I R +++ + Y R + ++ +
Sbjct: 320 TDPLFSQG--VHLASQS----AVSAAAAIDRITRHGDEKDAVHAWYNRTYREAYEQYHQF 373
Query: 987 RS 988
+
Sbjct: 374 LA 375
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.9 bits (69), Expect = 2.5
Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 41/128 (32%)
Query: 704 RLDY-----TKGLIESIRNSIAIPYERFV---QLAQAAPRVIDTKQKIVLGVDRLDYTKG 755
+++Y + + + P R V +L+ K+ +V+
Sbjct: 121 QVNYSSEVKENSVDSDDKAKV-PPLIRIVSGLELSDTKQ---KGKKFLVI---------- 166
Query: 756 LVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPN 815
A+E P E + I +P + + + + V +N + T
Sbjct: 167 ------AYE------P--FENIA---IELPPNEILFSENNDMDNNNDGVDELNKKCT--F 207
Query: 816 WSPIRYIY 823
W I +Y
Sbjct: 208 WDAISKLY 215
Score = 30.1 bits (67), Expect = 4.1
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 382 IAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIY 423
I +P + + + + V +N + T W I +Y
Sbjct: 176 IELPPNEILFSENNDMDNNNDGVDELNKKCT--FWDAISKLY 215
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 30.2 bits (68), Expect = 5.1
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 394 QDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLV 453
D D L+ +I P S + + E + L+ V
Sbjct: 336 HDDTYLFDSLLRKIE-DMILPKKSVSKVKQTQLLTTEGNYKPKRFEYVTWCDLKKAKGKV 394
Query: 454 AKEFVACQINEPPGVLIVSPFAGAGEQMHEALI 486
+ PPG+ I+ GE + E +I
Sbjct: 395 LARHIVPY---PPGIPIIFK----GETITENMI 420
Score = 30.2 bits (68), Expect = 5.1
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 794 QDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDGMNLV 853
D D L+ +I P S + + E + L+ V
Sbjct: 336 HDDTYLFDSLLRKIE-DMILPKKSVSKVKQTQLLTTEGNYKPKRFEYVTWCDLKKAKGKV 394
Query: 854 AKEFVACQINEPPGVLIVSPFAGAGEQMHEALI 886
+ PPG+ I+ GE + E +I
Sbjct: 395 LARHIVPY---PPGIPIIFK----GETITENMI 420
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 29.8 bits (67), Expect = 7.1
Identities = 11/64 (17%), Positives = 16/64 (25%), Gaps = 12/64 (18%)
Query: 33 IGTTNKLALLLDYDGTLA-------PIAPHP-----DMAVLPEETKRTLQKLANLPDVHI 80
+G T L D DG + D L + A+ P I
Sbjct: 13 LGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYADHPVTTI 72
Query: 81 SIIS 84
+
Sbjct: 73 VPVG 76
Score = 29.8 bits (67), Expect = 7.1
Identities = 11/64 (17%), Positives = 16/64 (25%), Gaps = 12/64 (18%)
Query: 1390 IGTTNKLALLLDYDGTLA-------PIAPHP-----DMAVLPEETKRTLQKLANLPDVHI 1437
+G T L D DG + D L + A+ P I
Sbjct: 13 LGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYADHPVTTI 72
Query: 1438 SIIS 1441
+
Sbjct: 73 VPVG 76
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit
chimera; multifunction macromolecular complex, ubiquitin,
ATP, conformational change, thioester, switch,
adenylation, protein turnover, ligase; HET: ATP; 2.80A
{Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 29.9 bits (67), Expect = 8.2
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 1299 VTLEDFDEYLSKNELFILKGMGTLITEDGDDV-LPTTMQPVTLEDFDEYLSK--NELLIL 1355
L++ +YL+ + +K T +G + L E LSK EL ++
Sbjct: 722 AKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLV 781
Query: 1356 KGMGTLITEDGDDVLPTTM 1374
G + D P T+
Sbjct: 782 DGQELAVA---DVTTPQTV 797
>1xfi_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT2G17340, center for eukaryotic structural
genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1
PDB: 2q40_A
Length = 367
Score = 29.7 bits (66), Expect = 8.4
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 1299 VTLEDFDEYLSK--NELFILKGMGT---LITEDGDDVLPTTMQPVTLEDFDEYLSKNELL 1353
+T + E LS+ +E L G+ T LI G+D+ + V+ ++ S +L+
Sbjct: 257 ITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVS-QELAYLSSDADLV 315
Query: 1354 ILKGMG 1359
I++GMG
Sbjct: 316 IVEGMG 321
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.431
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,992,947
Number of extensions: 1613588
Number of successful extensions: 4392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4283
Number of HSP's successfully gapped: 100
Length of query: 1460
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1354
Effective length of database: 3,742,167
Effective search space: 5066894118
Effective search space used: 5066894118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.9 bits)