RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy775
(1460 letters)
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
{Escherichia coli [TaxId: 562]}
Length = 456
Score = 310 bits (795), Expect = 2e-94
Identities = 144/401 (35%), Positives = 203/401 (50%), Gaps = 22/401 (5%)
Query: 127 EDKVSDLLKTLQEKVMSVHIDPKIFDSYYNGCCNGTFWPLFHSMPDRAMFCAEHWRAYAQ 186
ED+ +K S ++ + D YYN N WP FH D F W Y +
Sbjct: 48 EDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLR 107
Query: 187 VNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKLGFFL 246
VN ADK + LQ ++WIHDYHL+ A+ +R ++ + ++GFFL
Sbjct: 108 VNALLADKLLPLLQ----------DDDIIWIHDYHLLPFAHELR----KRGVNNRIGFFL 153
Query: 247 HIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQRRLGCRVDRKNLLVE 306
HIPFP +IF P D +L+ + D++GF E+ L F+DC R
Sbjct: 154 HIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTT-RSAKSHT 212
Query: 307 HGGRTVRIRPLPIAIPYERF-------VQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHR 359
G+ R PI I + + A + + + V+RLDY+KGL R
Sbjct: 213 AWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPER 272
Query: 360 LKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 419
A+E LLEK+P+H K+ QIA SR DV+ YQD++ +++ GRING++ W+P+
Sbjct: 273 FLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPL 332
Query: 420 RYIYGCISQDELASFYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGE 479
Y+ + L +R + V LVTPLRDGMNLVAKE+VA Q PGVL++S FAGA
Sbjct: 333 YYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAAN 392
Query: 480 QMHEALICNPYEIDAAAEVIHRALTMPEDERTLRMNYLRKR 520
++ ALI NPY+ D A + RALTM ER R +
Sbjct: 393 ELTSALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDV 433
Score = 238 bits (608), Expect = 3e-69
Identities = 132/455 (29%), Positives = 192/455 (42%), Gaps = 109/455 (23%)
Query: 539 YAQVNQEFADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTIRNIADEQNLKFKLG 598
Y +VN ADK + LQ ++WIHDYHL+ A+ +R ++ + ++G
Sbjct: 105 YLRVNALLADKLLPLLQ----------DDDIIWIHDYHLLPFAHELR----KRGVNNRIG 150
Query: 599 FFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQRRLGCRVDRKNL 658
FFLHIPFP +IF P D +L+ + D++GF E+ L F+DC R
Sbjct: 151 FFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTT-RSAK 209
Query: 659 LVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLIESIRNS 718
G+ R PI I + + A
Sbjct: 210 SHTAWGKAFRTEVYPIGIEPKEIAKQAAGP------------------------------ 239
Query: 719 IAIPYERFVQLAQAAPRVIDTKQKIVLGVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVT 778
+ A + + + V+RLDY+KGL R A+E LLEK+P+H K+
Sbjct: 240 --------LPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIR 291
Query: 779 LLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDA 838
QIA SR DV+ YQD++ +++ GRING++ W+P+ Y+ + L +R +
Sbjct: 292 YTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYS 351
Query: 839 AVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEV 898
V LVTPLRDGMNLVAKE+VA Q PGVL++S FAGA ++ ALI NPY+ D A
Sbjct: 352 DVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAA 411
Query: 899 IFCPYLGMNLVAKEFVACQINEPPGVLIVSPFAGAGEQMHEALICNPYEIDAAAEVIHRA 958
+ AL
Sbjct: 412 L--------------------------------------DRAL----------------- 416
Query: 959 LTMPEDERTLRMNYLRKREKVHDVNYWMRSFLKGM 993
TM ER R + +D+N+W F+ +
Sbjct: 417 -TMSLAERISRHAEMLDVIVKNDINHWQECFISDL 450
Score = 103 bits (256), Expect = 2e-23
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 1069 EQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQRRL 1128
++ + ++GFFLHIPFP +IF P D +L+ + D++GF E+ L F+DC
Sbjct: 142 KRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLT 201
Query: 1129 GCRVDRKNLLVEHGGRTVRIRPLPIAIPYERF-------VQLAQAAPRVIDTKQKIVLGV 1181
R G+ R PI I + + A + + + V
Sbjct: 202 RVTT-RSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSV 260
Query: 1182 DRLDYTKGLVHRNELF 1197
+RLDY+KGL R +
Sbjct: 261 ERLDYSKGLPERFLAY 276
>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related
protein {Archaeon Thermoplasma acidophilum [TaxId:
2303]}
Length = 229
Score = 63.0 bits (152), Expect = 2e-11
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 4/128 (3%)
Query: 41 LLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEGL 100
+ LDYDGTL PI +P+ + + L I++GR+ + + ++
Sbjct: 3 IFLDYDGTLVPIIMNPEESYADAGLLSLISDLK--ERFDTYIVTGRSPEEISRFLPLDIN 60
Query: 101 TYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSYYNGCCN 160
+ +G + F + + + V +
Sbjct: 61 MICYHGA--CSKINGQIVYNNGSDRFLGVFDRIYEDTRSWVSDFPGLRIYRKNLAVLYHL 118
Query: 161 GTFWPLFH 168
G
Sbjct: 119 GLMGADMK 126
Score = 54.6 bits (130), Expect = 2e-08
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1398 LLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGI 1454
+ LDYDGTL PI +P+ + + L I++GR+ + + +
Sbjct: 3 IFLDYDGTLVPIIMNPEESYADAGLLSLISDLK--ERFDTYIVTGRSPEEISRFLPL 57
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 37.3 bits (85), Expect = 0.007
Identities = 15/121 (12%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 41 LLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNV---HNVMEMVGI 97
+D DG L ++ + +++ + +S++SG + + + +GI
Sbjct: 6 AAIDVDGNLT-----DRDRLISTKAIESIRSAEK-KGLTVSLLSGNVIPVVYALKIFLGI 59
Query: 98 EGLTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSYYNG 157
G + N G I+ + E +K + + + + + ++
Sbjct: 60 NGPVFGENGG--IMFDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDI 117
Query: 158 C 158
Sbjct: 118 D 118
Score = 30.7 bits (68), Expect = 1.1
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 1398 LLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEM 1451
+D DG L ++ + +++ + +S++SG + V +
Sbjct: 6 AAIDVDGNLT-----DRDRLISTKAIESIRSAEK-KGLTVSLLSGNVIPVVYAL 53
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 243
Score = 37.3 bits (85), Expect = 0.008
Identities = 27/184 (14%), Positives = 51/184 (27%), Gaps = 15/184 (8%)
Query: 41 LLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEGL 100
L D DGTL + +E LQKL + I ++ G + V E +G + +
Sbjct: 6 CLFDVDGTLT-----APRQKITKEMDDFLQKLRQ--KIKIGVVGGSDFEKVQEQLGNDVV 58
Query: 101 T---YAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSYYNG 157
Y + + DG + +Q+ +
Sbjct: 59 EKYDYVFPENGLVAYKDGKLLCRQNIQSHLGE-----ALIQDLINYCLSYIAKIKLPKKR 113
Query: 158 CCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWI 217
F ++ C++ R + + K + L +E T +
Sbjct: 114 GTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGG 173
Query: 218 HDYH 221
Sbjct: 174 QISF 177
Score = 34.6 bits (78), Expect = 0.066
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 1398 LLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMV 1452
L D DGTL + +E LQKL + I ++ G + V E +
Sbjct: 6 CLFDVDGTLT-----APRQKITKEMDDFLQKLRQ--KIKIGVVGGSDFEKVQEQL 53
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 244
Score = 37.0 bits (84), Expect = 0.012
Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 17/214 (7%)
Query: 38 KLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGI 97
++ L D DGTL P + E LQKL + V I ++ G + + E +
Sbjct: 1 RVLCLFDVDGTLT-----PARQKIDPEVAAFLQKLRS--RVQIGVVGGSDYCKIAEQL-- 51
Query: 98 EGLTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSYYNG 157
G E+I F +++ +T+Q + + I
Sbjct: 52 -------GDGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYM 104
Query: 158 CCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWI 217
+ R + +E + + + +E+ ++
Sbjct: 105 ALLRLPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAG 164
Query: 218 HDYHLMLAANTIRNIADEQNLK-FKLGFFLHIPF 250
++ E K + L F
Sbjct: 165 KGLRFSRGGMISFDVFPEGWDKRYCLDSLDQDSF 198
Score = 34.7 bits (78), Expect = 0.059
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 1395 KLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEM 1451
++ L D DGTL P + E LQKL + V I ++ G + + E
Sbjct: 1 RVLCLFDVDGTLT-----PARQKIDPEVAAFLQKLRS--RVQIGVVGGSDYCKIAEQ 50
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 36.9 bits (84), Expect = 0.012
Identities = 13/116 (11%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 40 ALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEG 99
A+ +D DGT+ ++ E+ +++ +L + I +++G V + G
Sbjct: 4 AISIDIDGTIT-----YPNRMIHEKALEAIRRAESL-GIPIMLVTGNTVQFAEAASILIG 57
Query: 100 LTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSYY 155
+ + + + E + + ++ + + P
Sbjct: 58 TSGPVVAEDGGAISYKKKRIFLASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLV 113
Score = 33.5 bits (75), Expect = 0.12
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 1397 ALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGIEG 1456
A+ +D DGT+ ++ E+ +++ +L + I +++G V + G
Sbjct: 4 AISIDIDGTIT-----YPNRMIHEKALEAIRRAESL-GIPIMLVTGNTVQFAEAASILIG 57
Query: 1457 LTYA 1460
+
Sbjct: 58 TSGP 61
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 35.7 bits (81), Expect = 0.031
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 10/133 (7%)
Query: 40 ALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRN---VHNVMEMVG 96
AL D DGTL + +P T L+ + I I +GR ++N+ E+
Sbjct: 3 ALFFDIDGTLV----SFETHRIPSSTIEALEAAHAK-GLKIFIATGRPKAIINNLSELQD 57
Query: 97 IEGLTYA-GNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSYY 155
+ +G + + IP E ++ + + V I
Sbjct: 58 RNLIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEH-NISVCQP 116
Query: 156 NGCCNGTFWPLFH 168
N F+ H
Sbjct: 117 NEMVKKIFYDFLH 129
Score = 34.1 bits (77), Expect = 0.082
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 1397 ALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEM 1451
AL D DGTL + +P T L+ + I I +GR + +
Sbjct: 3 ALFFDIDGTLV----SFETHRIPSSTIEALEAAHAK-GLKIFIATGRPKAIINNL 52
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 32.7 bits (73), Expect = 0.28
Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 13/200 (6%)
Query: 38 KLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGI 97
+L L+ D D T E + + +++ +GR+ H+ E+
Sbjct: 3 QLLLISDLDNTWVGDQQAL-------EHLQEYLGDRR-GNFYLAYATGRSYHSARELQKQ 54
Query: 98 EGLTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSYYNG 157
GL ++ + L + Q ++ D +
Sbjct: 55 VGLMEPD-----YWLTAVGSEIYHPEGLDQHWADYLSEHWQRDILQAIADGFEALKPQSP 109
Query: 158 CCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKALQILAQEEPADSGTPLVWI 217
+ +H P + + + + + +
Sbjct: 110 LEQNPWKISYHLDPQACPTVIDQLTEMLKETGIPVQVIFSSGKDVDLLPQRSNKGNATQY 169
Query: 218 HDYHLMLAANTIRNIADEQN 237
HL + + D N
Sbjct: 170 LQQHLAMEPSQTLVCGDSGN 189
Score = 29.2 bits (64), Expect = 3.7
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 1395 KLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEMVGI 1454
+L L+ D D T E + + +++ +GR+ H+ E+
Sbjct: 3 QLLLISDLDNTWVGDQQAL-------EHLQEYLGDRR-GNFYLAYATGRSYHSARELQKQ 54
Query: 1455 EGLTY 1459
GL
Sbjct: 55 VGLME 59
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 32.6 bits (73), Expect = 0.36
Identities = 18/154 (11%), Positives = 39/154 (25%), Gaps = 3/154 (1%)
Query: 1060 CNTIKNIADEQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLN 1119
N + + ++ F + I G + +G + +
Sbjct: 216 ENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIR 275
Query: 1120 FVDCCQRRLGCRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQAAPRVIDTKQKIVL 1179
F D ++ + + G I IP A T + +
Sbjct: 276 FADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIY 335
Query: 1180 GVDRLDYTKGLVHRNELFILKGMGTLITEDGDDV 1213
+ + E L+ +G + E D +
Sbjct: 336 NWRVKETDRLFAMATE---LRKVGAEVEEGHDYI 366
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 30.1 bits (67), Expect = 2.0
Identities = 21/157 (13%), Positives = 44/157 (28%), Gaps = 9/157 (5%)
Query: 182 RAYAQVNQEF-------ADKTIKALQILAQEEPADSGTPLVWIHDYHLMLAANTIRNIAD 234
RA A+VN++ A +A + + D +W N +A+
Sbjct: 50 RAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLAN 109
Query: 235 EQNLKFKLGFFLHIPFPPWDIFRLFPWSDEILQGMLGCDMVGFHIEDYCLNFVDCCQRRL 294
+ + P D S+++ + + + Q
Sbjct: 110 RASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLN 169
Query: 295 GCRVDRKNLLVEHGGRTVRIRPLPIAIPYERFVQLAQ 331
+++ GRT P+ + E +A
Sbjct: 170 EKSRAFADIVKI--GRTHLQDATPLTLGQEISGWVAM 204
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 28.1 bits (62), Expect = 4.9
Identities = 15/95 (15%), Positives = 23/95 (24%), Gaps = 7/95 (7%)
Query: 30 SKYIGTTNKLALLLDYDGTLAPIAPHPDMAVLP------EETKRTLQKLANLPDVHISI- 82
SK T+ K + +Y+ P + L E N +SI
Sbjct: 26 SKPFETSFKKIVYREYEAYFQKEKPQSRTSGLLGPTLYAEVGDIMKVHFKNKAHKPLSIH 85
Query: 83 ISGRNVHNVMEMVGIEGLTYAGNHGLEIIHPDGSR 117
G E T + + P
Sbjct: 86 AQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEY 120
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 28.0 bits (61), Expect = 7.6
Identities = 16/169 (9%), Positives = 40/169 (23%), Gaps = 17/169 (10%)
Query: 35 TTNKLALLLDYDGTLAPIAPHPDMAVLPEETKRTLQKLANLPDVHISIISGRNVHNVMEM 94
TT K ++ D+DGT+ + + K P+ + ++
Sbjct: 1 TTRKPFIICDFDGTIT-----------MNDNIINIMKTFAPPEWMALKDGVLSKTLSIKE 49
Query: 95 VGIEGLTYAGNHGLEIIHPDGSRFVHPIPTEFEDKVSDLLKTLQEKVMSVHIDPKIFDSY 154
+ E I + + + E + ++ D +
Sbjct: 50 GVGRMFGLLPSSLKEEITSFVLEDAKIRE-----GFREFVAFINEHEIPFYVISGGMDFF 104
Query: 155 YNGCCNGTFWPLFHSMPDRAMFCAEHWRAYAQVNQEFADKTIKALQILA 203
G + A F ++ + + +
Sbjct: 105 VYPLLEGIVEKDRIYC-NHASFDNDYIHIDWPHSCKGTCSNQCGCCKPS 152
>d1x9aa_ c.114.1.2 (A:) Hypothetical protein TM0979 {Thermotoga
maritima [TaxId: 2336]}
Length = 87
Score = 26.3 bits (58), Expect = 9.4
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 710 GLIESIRNSIAIPYERFVQLAQAAPRVI 737
G E I Y F+ L + + I
Sbjct: 59 GYSEEDSKVPLITYSEFIDLLEGEEKFI 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.431
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,849,885
Number of extensions: 304057
Number of successful extensions: 1076
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1059
Number of HSP's successfully gapped: 40
Length of query: 1460
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1363
Effective length of database: 1,075,786
Effective search space: 1466296318
Effective search space used: 1466296318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.2 bits)