Query psy7757
Match_columns 143
No_of_seqs 47 out of 49
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 18:02:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s93_A Tudor domain-containing 96.1 0.0048 1.7E-07 44.3 3.7 64 71-135 7-70 (102)
2 3rco_A Tudor domain-containing 93.8 0.037 1.3E-06 39.4 2.7 55 77-132 15-69 (89)
3 2kzv_A Uncharacterized protein 89.0 0.13 4.6E-06 36.2 1.2 22 112-134 46-67 (92)
4 2kpm_A Uncharacterized protein 83.6 0.45 1.6E-05 34.5 1.7 22 112-133 59-80 (105)
5 4gt4_A Tyrosine-protein kinase 25.2 40 0.0014 26.4 2.5 50 70-120 144-195 (308)
6 4asz_A BDNF/NT-3 growth factor 23.9 53 0.0018 25.6 2.9 50 71-120 128-178 (299)
7 2i6l_A Mitogen-activated prote 23.6 44 0.0015 24.0 2.2 52 70-121 119-172 (320)
8 4g3f_A NF-kappa-beta-inducing 23.2 34 0.0012 27.7 1.7 51 70-120 149-201 (336)
9 3brb_A Proto-oncogene tyrosine 23.1 59 0.002 23.7 2.9 51 70-120 146-197 (313)
10 1w94_A MIL, probable BRIX-doma 22.2 41 0.0014 25.0 1.9 25 65-90 6-30 (156)
11 4aoj_A High affinity nerve gro 21.3 44 0.0015 26.4 2.0 53 69-121 156-209 (329)
12 1luf_A Muscle-specific tyrosin 21.0 60 0.0021 23.8 2.6 50 71-120 174-224 (343)
13 2cr7_A Paired amphipathic heli 20.5 17 0.00057 24.5 -0.5 27 74-100 49-75 (80)
No 1
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=96.10 E-value=0.0048 Score=44.32 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=56.6
Q ss_pred hhhHhHHHHHHHHhhhCCCcccccCcccchhhhhccccccccccchhhHHHHHhhccceeeeecc
Q psy7757 71 GQMSLLCRELVDLLKTFPHCQMVFNKFIPAYHHHFGRQCRVADYGFTKLIDLLEAIPHVVQVIMD 135 (143)
Q Consensus 71 ~~l~qFarEvVdLLk~~p~c~m~F~kFipaYHhHFGrQCRvsdYGftKL~dLleaIp~vVqIlg~ 135 (143)
+-+..-..++-.||-..+. .++-.++..-|.-.-|..--+-.|||..|.|+|.+||+||++.+.
T Consensus 7 ~~l~~vkk~irslLiS~K~-gvtl~~L~~dYr~~~G~~iP~r~lGy~sl~~fL~sipdvv~~~~~ 70 (102)
T 3s93_A 7 RIQECLRKEIRSLLISTKD-GLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDMPDVVRVCPG 70 (102)
T ss_dssp HHHHHHHHHHHHHHHSSSS-CBCHHHHHHHHHHHHSSCCCTGGGTCSSHHHHHHTCTTTEEEECC
T ss_pred HHHHHHHHHHHHhheeCCC-CcCHHHHHHHHHHHcCCcCCchhcCcCCHHHHHHcCCCeEEEEec
Confidence 4556777888888888776 689999999999999999999999999999999999999998654
No 2
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=93.75 E-value=0.037 Score=39.43 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=47.1
Q ss_pred HHHHHHHhhhCCCcccccCcccchhhhhccccccccccchhhHHHHHhhccceeee
Q psy7757 77 CRELVDLLKTFPHCQMVFNKFIPAYHHHFGRQCRVADYGFTKLIDLLEAIPHVVQV 132 (143)
Q Consensus 77 arEvVdLLk~~p~c~m~F~kFipaYHhHFGrQCRvsdYGftKL~dLleaIp~vVqI 132 (143)
.+++-.||...+. -++-.++..-|.-.-|..--+-.+||..+.|+|.+||+||++
T Consensus 15 ~k~iRslL~S~k~-gvtl~~L~~DYr~l~G~~iP~r~lGy~sl~~fL~siPdvv~~ 69 (89)
T 3rco_A 15 SKMLRAVLQSHKN-GVALPRLQGEYRSLTGDWIPFKQLGFPTLEAYLRSVPAVVRI 69 (89)
T ss_dssp HHHHHHHHHTCTT-CEEHHHHHHHHHHHHSSCCCTTTTTCSSHHHHHHTCTTTEEE
T ss_pred HHHHHHHhhcCCC-CCCHHHHHHHHHHHhCCcCChhhhCcccHHHHHhcccCeEEE
Confidence 4455566666544 488889999999999999999999999999999999999996
No 3
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=88.97 E-value=0.13 Score=36.16 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=17.6
Q ss_pred cccchhhHHHHHhhccceeeeec
Q psy7757 112 ADYGFTKLIDLLEAIPHVVQVIM 134 (143)
Q Consensus 112 sdYGftKL~dLleaIp~vVqIlg 134 (143)
-+|||.||.+|+++++ ..++-.
T Consensus 46 RnYGy~kLs~Li~~~~-~fe~~~ 67 (92)
T 2kzv_A 46 RNWGHGRLSQMVKKLD-FLTVQE 67 (92)
T ss_dssp TTTCSSHHHHHHHTCT-TEEEEE
T ss_pred cccCcccHHHHHHhcC-cEEEEE
Confidence 4799999999999965 566643
No 4
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=83.62 E-value=0.45 Score=34.52 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=17.2
Q ss_pred cccchhhHHHHHhhccceeeee
Q psy7757 112 ADYGFTKLIDLLEAIPHVVQVI 133 (143)
Q Consensus 112 sdYGftKL~dLleaIp~vVqIl 133 (143)
=.|||.||.+|+++..+..+|.
T Consensus 59 RnYGy~kLs~Li~a~~~~FEi~ 80 (105)
T 2kpm_A 59 RLYGYKKLSDLVKARTDLFVTE 80 (105)
T ss_dssp GGTTCSSHHHHHHHCTTTEEEE
T ss_pred cccCcccHHHHHHhhCCcEEEE
Confidence 4799999999999944456654
No 5
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=25.19 E-value=40 Score=26.37 Aligned_cols=50 Identities=8% Similarity=0.148 Sum_probs=29.4
Q ss_pred chhhHhHHHHHHHHhhhCCCcccccCcccch--hhhhccccccccccchhhHH
Q psy7757 70 QGQMSLLCRELVDLLKTFPHCQMVFNKFIPA--YHHHFGRQCRVADYGFTKLI 120 (143)
Q Consensus 70 ~~~l~qFarEvVdLLk~~p~c~m~F~kFipa--YHhHFGrQCRvsdYGftKL~ 120 (143)
.+....++.++.+=|.+.....+-=-++=|+ .= .=.-.+|+||||+.|..
T Consensus 144 ~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl-~~~~~~Ki~DFGlar~~ 195 (308)
T 4gt4_A 144 PPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLV-YDKLNVKISDLGLFREV 195 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEE-CGGGCEEECCSCCBCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEE-CCCCCEEECCcccceec
Confidence 3456689999988887665443322222121 00 01236999999998854
No 6
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=23.88 E-value=53 Score=25.57 Aligned_cols=50 Identities=10% Similarity=0.196 Sum_probs=29.9
Q ss_pred hhhHhHHHHHHHHhhhCCCcccccCcccch-hhhhccccccccccchhhHH
Q psy7757 71 GQMSLLCRELVDLLKTFPHCQMVFNKFIPA-YHHHFGRQCRVADYGFTKLI 120 (143)
Q Consensus 71 ~~l~qFarEvVdLLk~~p~c~m~F~kFipa-YHhHFGrQCRvsdYGftKL~ 120 (143)
+....+++++.+=|.+.....+---++=|+ -=---...+|++|||+.|..
T Consensus 128 ~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 178 (299)
T 4asz_A 128 SQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDV 178 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEECCcccceec
Confidence 456689999988777665443322222222 00001346999999999865
No 7
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=23.63 E-value=44 Score=23.99 Aligned_cols=52 Identities=17% Similarity=0.388 Sum_probs=34.4
Q ss_pred chhhHhHHHHHHHHhhhCCCcccccCcccch--hhhhccccccccccchhhHHH
Q psy7757 70 QGQMSLLCRELVDLLKTFPHCQMVFNKFIPA--YHHHFGRQCRVADYGFTKLID 121 (143)
Q Consensus 70 ~~~l~qFarEvVdLLk~~p~c~m~F~kFipa--YHhHFGrQCRvsdYGftKL~d 121 (143)
.+....++.++++-|.+.....+--.++-|+ +-..-+..++++|||+.+..+
T Consensus 119 ~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~ 172 (320)
T 2i6l_A 119 EEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMD 172 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccccccC
Confidence 3466789999999888776655555555454 111134579999999987643
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=23.19 E-value=34 Score=27.65 Aligned_cols=51 Identities=8% Similarity=0.161 Sum_probs=34.4
Q ss_pred chhhHhHHHHHHHHhhhCCCcccccCcccch--hhhhccccccccccchhhHH
Q psy7757 70 QGQMSLLCRELVDLLKTFPHCQMVFNKFIPA--YHHHFGRQCRVADYGFTKLI 120 (143)
Q Consensus 70 ~~~l~qFarEvVdLLk~~p~c~m~F~kFipa--YHhHFGrQCRvsdYGftKL~ 120 (143)
++....+++|+++=|.+.....+---++=|+ .=..-|.+++++|||+.|..
T Consensus 149 e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~ 201 (336)
T 4g3f_A 149 EDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCL 201 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEc
Confidence 3466789999999998877665544333333 11123557999999998854
No 9
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=23.14 E-value=59 Score=23.66 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=31.8
Q ss_pred chhhHhHHHHHHHHhhhCCCcccccCcccch-hhhhccccccccccchhhHH
Q psy7757 70 QGQMSLLCRELVDLLKTFPHCQMVFNKFIPA-YHHHFGRQCRVADYGFTKLI 120 (143)
Q Consensus 70 ~~~l~qFarEvVdLLk~~p~c~m~F~kFipa-YHhHFGrQCRvsdYGftKL~ 120 (143)
...+..++.++++-|.+.....+--.++-|+ .--.-..+++++|||+.+..
T Consensus 146 ~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~ 197 (313)
T 3brb_A 146 LQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKI 197 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSCSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEeecCcceec
Confidence 3466789999999888776665554444444 11111236999999998764
No 10
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=22.17 E-value=41 Score=25.00 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=19.6
Q ss_pred CCcccchhhHhHHHHHHHHhhhCCCc
Q psy7757 65 VSPSLQGQMSLLCRELVDLLKTFPHC 90 (143)
Q Consensus 65 ~sp~~~~~l~qFarEvVdLLk~~p~c 90 (143)
||..-.+++.+||+|+...| +.++.
T Consensus 6 TSr~Ps~~l~~fakeLa~~l-n~~~v 30 (156)
T 1w94_A 6 TSRKPSQRTRSFSQRLSRIM-GWRYI 30 (156)
T ss_dssp ECSSCCHHHHHHHHHHHHHH-TCEEC
T ss_pred CCCCCCHHHHHHHHHHHHHh-CCEEE
Confidence 34445568999999999999 87665
No 11
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=21.32 E-value=44 Score=26.39 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=26.7
Q ss_pred cchhhHhHHHHHHHHhhhCCCcccccCcccch-hhhhccccccccccchhhHHH
Q psy7757 69 LQGQMSLLCRELVDLLKTFPHCQMVFNKFIPA-YHHHFGRQCRVADYGFTKLID 121 (143)
Q Consensus 69 ~~~~l~qFarEvVdLLk~~p~c~m~F~kFipa-YHhHFGrQCRvsdYGftKL~d 121 (143)
-.+....|+.++.+=|.+.....+-=-++=|+ -=-.-...+|++|||+.|...
T Consensus 156 ~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~ 209 (329)
T 4aoj_A 156 GLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIY 209 (329)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC------
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEEEcccccceecc
Confidence 33466789999988887665443322222221 000113469999999998653
No 12
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=21.03 E-value=60 Score=23.78 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=31.6
Q ss_pred hhhHhHHHHHHHHhhhCCCcccccCcccch-hhhhccccccccccchhhHH
Q psy7757 71 GQMSLLCRELVDLLKTFPHCQMVFNKFIPA-YHHHFGRQCRVADYGFTKLI 120 (143)
Q Consensus 71 ~~l~qFarEvVdLLk~~p~c~m~F~kFipa-YHhHFGrQCRvsdYGftKL~ 120 (143)
.....++.++++-|.+.....+--.++-|+ .----..+++++|||+.+..
T Consensus 174 ~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 224 (343)
T 1luf_A 174 AEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNI 224 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEECCCCeEEEeecCCCccc
Confidence 455678999999888765554443333333 00011237999999998765
No 13
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=20.51 E-value=17 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=23.9
Q ss_pred HhHHHHHHHHhhhCCCcccccCcccch
Q psy7757 74 SLLCRELVDLLKTFPHCQMVFNKFIPA 100 (143)
Q Consensus 74 ~qFarEvVdLLk~~p~c~m~F~kFipa 100 (143)
...-.+|-+||+..|.-..-|+.|.|.
T Consensus 49 ~~v~~rV~~Lf~~hpdLi~gFn~FLP~ 75 (80)
T 2cr7_A 49 PGVIRRVSQLFHEHPDLIVGFNAFLPS 75 (80)
T ss_dssp HHHHHHHHHHGGGCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCcC
Confidence 456678999999999999999999996
Done!