RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7757
(143 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 9e-06
Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 53/165 (32%)
Query: 7 AMVLVARHAATTIVKENMSTPVADIVMGAGDSMG-----VANATVNNI------------ 49
A+ L+ + AA +K P AG S+G + A V +I
Sbjct: 1735 ALTLMEK-AAFEDLKSKGLIPADATF--AGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 50 --QHS--SDEGGSSETS-PSVSPSLQGQMSLLC-----RELVDLL--KTFPHCQMV-FNK 96
Q + DE G S +++P G+++ + +V+ + +T ++V +N
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINP---GRVAASFSQEALQYVVERVGKRTGWLVEIVNYN- 1847
Query: 97 FIPAYHHHFGRQCRVADYGFTKLIDLLEAIPHVVQVIMDFLRSQR 141
+ +Q A G + +D + +++F++ Q+
Sbjct: 1848 -VE------NQQYVAA--GDLRALDTVTN-------VLNFIKLQK 1876
Score = 33.9 bits (77), Expect = 0.015
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 20/76 (26%)
Query: 70 QG-Q---MSLLCRELVDLLKTFPHCQMVFNKFIPAYHHHFGRQCRVADYGFTKLIDLLEA 125
QG Q M + DL KT Q V+N+ A +HF YGF+ ++D++
Sbjct: 1624 QGSQEQGMGM------DLYKTSKAAQDVWNR---A-DNHFKDT-----YGFS-ILDIVIN 1667
Query: 126 IPHVVQVIMDFLRSQR 141
P + + + +R
Sbjct: 1668 NPVNLTIHFGGEKGKR 1683
Score = 28.1 bits (62), Expect = 1.3
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 70 QGQMSLLCRELVDLLKTFPHCQMVFNKFIPAYHHHFGRQCRVADYGFTKLIDLL------ 123
QG EL DL +T+ KF R A+ FT+ +++L
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 124 EAIPHVVQVIMDFLRS 139
P D+L S
Sbjct: 223 SNTPDK-----DYLLS 233
Score = 25.8 bits (56), Expect = 6.8
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 49 IQHSSDEGGSSETSPSVSPSLQGQMSLLCRELVDLLKTFP 88
+ H GS E V + S L +E K P
Sbjct: 11 LSH-----GSLEHVLLVPTASFFIASQL-QE--QFNKILP 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 3e-04
Identities = 27/184 (14%), Positives = 54/184 (29%), Gaps = 56/184 (30%)
Query: 9 VLVARHAATTIVKENMSTPVADIVMGAGDSMGVANATVNNIQHSSDEGGSSETSPSVSPS 68
+ + V+ M + + + +S + + + D +S + S +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 69 LQGQMSLLCRELVDLL--KTFPHCQMVF-----NKFIPAYHHHFGRQCR---------VA 112
L ++ + EL LL K + +C +V K A F C+ V
Sbjct: 225 L--RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVT 278
Query: 113 DY----------------GFTK--LIDLL-------------EAI---PHVVQVIMDFLR 138
D+ T + LL E + P + +I + +R
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 139 SQRD 142
Sbjct: 339 DGLA 342
Score = 32.1 bits (72), Expect = 0.055
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 101 YHHHFGRQCRVADYGFTKLI-DLLEAIPHVVQV--IMDFLRS 139
+HHH + Y + ++ +A + D +S
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS 44
>2kpm_A Uncharacterized protein; methods development, structural genomics,
PSI-2, protein structure initiative; NMR {Nitrosomonas
europaea}
Length = 105
Score = 28.4 bits (63), Expect = 0.36
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 113 DYGFTKLIDLLEAIPHVVQV 132
YG+ KL DL++A +
Sbjct: 60 LYGYKKLSDLVKARTDLFVT 79
>3s93_A Tudor domain-containing protein 5; structural genomics consortium,
SGC, transcription; 2.28A {Homo sapiens}
Length = 102
Score = 26.7 bits (59), Expect = 1.3
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 101 YHHHFGRQCRVADYGFTKLIDLLEAIPHVVQVI 133
Y G + G+ ++L+ +P VV+V
Sbjct: 36 YLLMVGNHLPLRILGYRSTMELVLDMPDVVRVC 68
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG; NMR {Chromobacterium violaceum}
Length = 92
Score = 26.4 bits (58), Expect = 1.7
Identities = 2/15 (13%), Positives = 9/15 (60%)
Query: 113 DYGFTKLIDLLEAIP 127
++G +L +++ +
Sbjct: 47 NWGHGRLSQMVKKLD 61
>3hzs_A Monofunctional glycosyltransferase; transglycosylase,
peptidoglycan, moenomycin, membrane, cell shape; HET:
M0E; 2.10A {Staphylococcus aureus subsp}
Length = 209
Score = 26.8 bits (60), Expect = 2.0
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 37 DSMGVANATVNNIQHSSDEGGSSET 61
D G A + I +GGS+ T
Sbjct: 52 DLKGTTRALFSTISDRDVQGGSTIT 76
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 27.0 bits (60), Expect = 2.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 37 DSMGVANATVNNIQHSSDEGGSSET 61
D G A + I +GGS+ T
Sbjct: 105 DLKGTTRALFSTISDRDVQGGSTIT 129
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid,
structural genomics, PSI-2, protein structure
initiative; NMR {Bacteroides thetaiotaomicron}
Length = 77
Score = 25.9 bits (56), Expect = 2.4
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 36 GDSMGVANATVNNIQHSSDEGGSSETSPSVSPSLQGQMSLLCRELVDLLKTFPHCQMVFN 95
+ MG++ + NI+ S +P + ++ L + VDL F +++ N
Sbjct: 22 AEEMGISRQQLCNIEQS-----------ETAPVVVKYIAFLRSKGVDLNALFD--RIIVN 68
Query: 96 KFIPAYHHH 104
K +HHH
Sbjct: 69 KLEHHHHHH 77
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 26.6 bits (59), Expect = 3.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 77 CRELVDLLKTFPHCQMVFNKFI 98
C L+DLL FP CQ + +
Sbjct: 262 CACLLDLLLAFPSCQPPLSLLL 283
>3rco_A Tudor domain-containing protein 7; structural genomics, structural
genomics consortium, SGC, HL DNA binding protein; 1.80A
{Homo sapiens}
Length = 89
Score = 25.6 bits (56), Expect = 3.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 101 YHHHFGRQCRVADYGFTKLIDLLEAIPHVVQV 132
Y G GF L L ++P VV++
Sbjct: 38 YRSLTGDWIPFKQLGFPTLEAYLRSVPAVVRI 69
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair,
DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A*
3s4w_A
Length = 1308
Score = 26.4 bits (57), Expect = 4.7
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 18/92 (19%)
Query: 50 QHSSDEGGSSETSPSVSPSLQGQM-SLLCRELVDLLKTFPHCQMVFNKFIPAYHHHFGRQ 108
+ G ++ V C E++D LK G+Q
Sbjct: 555 SQCTQSIGVTQVRVDVHSRYSAVANETFCLEIIDSLKRS-----------------LGQQ 597
Query: 109 CRVADYGFTKLIDLLEAIPHVVQVIMDFLRSQ 140
+ + D+L + IM L SQ
Sbjct: 598 ADIRLMLYDGFYDVLRRNSQLASSIMQTLFSQ 629
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 25.6 bits (56), Expect = 7.4
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 36 GDSMGVANATVNNIQHSSDEGGSSETSP 63
G+ M +ANAT SS G S+ + P
Sbjct: 828 GERMFIANAT----GCSSIWGASAPSMP 851
>3d1b_A RNA-induced transcriptional silencing complex protein TAS3; all
alpha motif, RITS complex, immunoglobulin fold, cell
cycle; 1.70A {Schizosaccharomyces pombe} PDB: 3d1d_A
Length = 124
Score = 25.2 bits (54), Expect = 7.7
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 81 VDLLKTFPHCQMVFNKFIPAYHHHF 105
+ +T C K IP YH+
Sbjct: 25 LSFFQTNSSCAEALVKVIPHYHNKL 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.387
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,195,064
Number of extensions: 120571
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 27
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.7 bits)