RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7757
         (143 letters)



>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon
          regulatory protein PrpR {Escherichia coli [TaxId: 562]}
          Length = 186

 Score = 25.4 bits (56), Expect = 2.5
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 9  VLVARHAATTIVKENMSTPVADIVMGAGDSM 39
           ++A  +    +K  +S PV  I     D +
Sbjct: 54 AIIAAGSNGAYLKSRLSVPVILIKPSGYDVL 84


>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 124

 Score = 24.3 bits (52), Expect = 4.8
 Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 2/74 (2%)

Query: 68  SLQGQMSLLCRELVDLLKTFPHCQMVFNKFIPAYHHHFGRQCRVADYGFTKLIDLLEAIP 127
           SL          L +          + N+       +  R      Y    + +L     
Sbjct: 42  SLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWD 101

Query: 128 HVVQVIMDFLRSQR 141
            V Q++    R Q 
Sbjct: 102 KVKQLVPI--RDQS 113


>d1kzqa2 b.6.2.1 (A:132-255) Major surface antigen p30, SAG1
          {Toxoplasma gondii [TaxId: 5811]}
          Length = 124

 Score = 24.1 bits (52), Expect = 6.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 42 ANATVNNIQHSSDEGGSSETSPSVSPSLQGQMSLLC 77
          A++ VNN+   S    S+     +S      M+L+C
Sbjct: 1  ASSVVNNVARCSYGADSTLGPVKLSAEGPTTMTLVC 36


>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
           IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 24.6 bits (53), Expect = 6.4
 Identities = 4/27 (14%), Positives = 9/27 (33%), Gaps = 1/27 (3%)

Query: 83  LLKTFPHCQM-VFNKFIPAYHHHFGRQ 108
           ++KT     +   +  +  YH      
Sbjct: 115 VIKTVSSEDVAEMHNILKKYHQFIVEC 141


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,836
Number of extensions: 21098
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 6
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.4 bits)