RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7758
(235 letters)
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 245 bits (628), Expect = 3e-82
Identities = 83/190 (43%), Positives = 121/190 (63%), Gaps = 3/190 (1%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEM 61
L +EC+ CP C NR F+ + + +EV T +GWGL+A DL FV+EY GE+
Sbjct: 92 LMIECSS-RCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEV 150
Query: 62 IDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKKGNLARFMNHSCEPNCTAEKWTVS 121
+D KE R ++ RN + +YYF++L N IDA +KGN +RFMNHSCEPNC +KWTV+
Sbjct: 151 LDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVN 210
Query: 122 GDTRVGLFALRDVPAGTELVFNYELQKADNDGMRRCMCGAASCSGFIGAKKAVPPTSECE 181
G RVG F + VP+G+EL F+Y+ Q+ + ++C CG+A+C G++G + V +
Sbjct: 211 GQLRVGFFTTKLVPSGSELTFDYQFQRYGKEA-QKCFCGSANCRGYLGGENRVSIRAAGG 269
Query: 182 KGKEVTRARK 191
K K+ R+RK
Sbjct: 270 KMKK-ERSRK 278
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 241 bits (618), Expect = 3e-81
Identities = 94/168 (55%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEM 61
L EC+P CPA +CQN+ F R YP +E+F T RGWGL+ TD+K+G+FV EYVGE+
Sbjct: 66 LLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGEL 125
Query: 62 IDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKKGNLARFMNHSCEPNCTAEKWTVS 121
ID++E R R ++ N+Y L+LD R IDAG KGN ARFMNH C+PNC +KW+V+
Sbjct: 126 IDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVN 185
Query: 122 GDTRVGLFALRDVPAGTELVFNYELQKADNDGMRRCMCGAASCSGFIG 169
GDTRVGLFAL D+ AGTEL FNY L+ N C CGA +CSGF+G
Sbjct: 186 GDTRVGLFALSDIKAGTELTFNYNLECLGNGKT-VCKCGAPNCSGFLG 232
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 238 bits (610), Expect = 3e-80
Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPP-LEVFNTGSRGWGLKALTDLKRGQFVVEYVGE 60
++ EC+P++CP +C N+ + + LE F +GWG++ LK GQF++EY+GE
Sbjct: 47 IFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGE 106
Query: 61 MIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKKGNLARFMNHSCEPNCTAEKWTV 120
++ ++E R + N+ +Y +LD+ ID+ + GN ARF+NHSC+PNC +KW+V
Sbjct: 107 VVSEQEFRNRMIEQYHNHSDHYCL-NLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSV 165
Query: 121 SGDTRVGLFALRDVPAGTELVFNYELQKADNDGMRRCMCGAASCSGFIGAKK 172
+G R+GL+AL+D+PAGTEL ++Y + + + C CG C G IG K
Sbjct: 166 NGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRGIIGGKS 217
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 204 bits (522), Expect = 3e-67
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 1 DLYVECNPDSCPARTKC---QNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEY 57
++ ++ + + R + + + V+ + G GL ++ G+ V+EY
Sbjct: 23 EVQLKSAR-RATSMDLPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEY 81
Query: 58 VGEMIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKKGNLARFMNHSCEPNCTAEK 117
G +I + ++R + D Y F +D+S +DA GN ARF+NHSCEPNC +
Sbjct: 82 AGNVIRSIQTDKREKYYDSKGIGCYMF-RIDDSEVVDATMHGNAARFINHSCEPNCYSRV 140
Query: 118 WTVSGDTRVGLFALRDVPAGTELVFNYELQKADNDGMRRCMCGAASCSGFI 168
+ G + +FA+R + G EL ++Y+ D C CGA C F+
Sbjct: 141 INIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFL 191
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 208 bits (530), Expect = 5e-67
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 21/189 (11%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEM 61
+ ECN C +C NR + PLE+F T +GWG+++L G F+ Y+GE+
Sbjct: 112 VIYECNS-FCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEV 170
Query: 62 IDQKELNRRRRDMDRNNDHNYYFLSL---DNSRYIDAGKKGNLARFMNHSCEPNCTAEKW 118
I E +R ++ D + + L + + +DA G+++RF NHSC PN
Sbjct: 171 ITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSA 230
Query: 119 TVSGDT----RVGLFALRDVPAGTELVFNYELQKADND-------------GMRRCMCGA 161
+ + FA++D+ EL F+Y K + R+C CG+
Sbjct: 231 VRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGS 290
Query: 162 ASCSGFIGA 170
A+C G++
Sbjct: 291 ANCRGWLFG 299
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 200 bits (510), Expect = 4e-64
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEM 61
ECN C C+NR + +VF T +GWGL+ L + +G+FV EY GE+
Sbjct: 101 PVFECNV-LCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEV 159
Query: 62 IDQKELNRRRRDMDRNNDH------NYYFLSLDNSRYIDAGKKGNLARFMNHSCEPNCTA 115
+ E+ RR +++ + + + ++D GN+ RF+NHSCEPN
Sbjct: 160 LGFSEVQRRIHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLM 219
Query: 116 EKWTVSGDT-RVGLFALRDVPAGTELVFNYELQKADNDG------------MRRCMCGAA 162
+ ++ LFA +D+ EL ++Y + + + C CGA
Sbjct: 220 IPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAK 279
Query: 163 SCSGFIGAK 171
SC+ F+
Sbjct: 280 SCTAFLPFD 288
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 195 bits (496), Expect = 6e-62
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGS-RGWGLKALTDLKRGQFVVEYVGE 60
ECN C C NR + L +F T + RGWG+K L +KR FV+EYVGE
Sbjct: 115 PIYECNSR-CQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGE 173
Query: 61 MIDQKELNRRRRDMDRNNDHNYYFLSLDNSRY-IDAGKKGNLARFMNHSCEPNCTAEKWT 119
+I +E RR + D + L ++ + +DA + GN++ F+NHSC+PN
Sbjct: 174 VITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQVFNVF 233
Query: 120 VSGDT----RVGLFALRDVPAGTELVFNYELQKADND-------------GMRRCMCGAA 162
+ R+ LF+ R + AG EL F+Y+++ + + C CGA
Sbjct: 234 IDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAV 293
Query: 163 SCSGFI 168
+C G++
Sbjct: 294 TCRGYL 299
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
lysine, alternative splicing, cell cycle, cell division,
chromatin regulator, chromosomal protein, coiled coil;
HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A*
3f9z_A* 1zkk_A* 2bqz_A*
Length = 166
Score = 188 bits (480), Expect = 3e-61
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 5 ECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEMIDQ 64
E + K + E+ +++ +G G+ A RG FVVEY G++I+
Sbjct: 11 ELQSEER----KRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEI 66
Query: 65 KELNRRRRDMDRNN---DHNYYFLSLDNSRYIDAGKKGN-LARFMNHSCEPNCTAEKWTV 120
+ +R ++ + YYF L + +DA ++ N L R +NHS NC + +
Sbjct: 67 TDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDI 126
Query: 121 SGDTRVGLFALRDVPAGTELVFNY 144
G + L A RD+ AG EL+F+Y
Sbjct: 127 DGVPHLILIASRDIAAGEELLFDY 150
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 192 bits (488), Expect = 1e-60
Identities = 60/195 (30%), Positives = 86/195 (44%), Gaps = 29/195 (14%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEM 61
EC+ C C NR E PL++F T RGWG+K ++KRGQFV Y+GE+
Sbjct: 108 PIYECHQ-GCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEI 166
Query: 62 IDQKELNRRRRDMDRNNDHNYYFLSLDNSR--------------YIDAGKKGNLARFMNH 107
I +E +RRR + + Y +LD +D RF+NH
Sbjct: 167 ITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINH 226
Query: 108 SCEPNCTAEKWTVSGDT----RVGLFALRDVPAGTELVFNYELQKADND----------G 153
SC+PN + LFA++D+P GTEL F+Y +
Sbjct: 227 SCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISE 286
Query: 154 MRRCMCGAASCSGFI 168
M +C+CG A C G++
Sbjct: 287 MTKCLCGTAKCRGYL 301
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 182 bits (463), Expect = 3e-57
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 10/171 (5%)
Query: 1 DLYVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGE 60
L ECN +C C+NR + L+++ T GWG+++L D+ G FV EYVGE
Sbjct: 121 PLIFECNH-ACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGE 179
Query: 61 MIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKKGNLARFMNHSCEPNCTAEKWTV 120
+I E + R D + N IDA GN++RF+NH CEPN + +
Sbjct: 180 LISDSEADVREEDSYLFDLDNKD----GEVYCIDARFYGNVSRFINHHCEPNLVPVRVFM 235
Query: 121 SGD----TRVGLFALRDVPAGTELVFNYELQKADNDGMR-RCMCGAASCSG 166
+ R+ F+ R + AG +L F+Y + D G C CG+ C
Sbjct: 236 AHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRH 286
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 131 bits (330), Expect = 1e-37
Identities = 38/185 (20%), Positives = 61/185 (32%), Gaps = 22/185 (11%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPPLEVFN--------------TGSRGWGLKALTD 47
E + K Q + F+ + L +F + G + A +
Sbjct: 96 TSGEWARHYFLNKNKMQEKLFKEHVFIYLRMFATDSGFEILPCNRYSSEQNGAKIVATKE 155
Query: 48 LKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKKGNLARFMNH 107
KR + VG + + E+ ND + + ++R A A F+NH
Sbjct: 156 WKRNDKIELLVGCIAELSEIEENMLLRHGENDFSVMY----STRKNCAQLWLGPAAFINH 211
Query: 108 SCEPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNYELQKADNDGMRRCMCGAASCSGF 167
C PNC K+ +G + ALRD+ G E+ Y + C C G
Sbjct: 212 DCRPNC---KFVSTGRDTACVKALRDIEPGEEISCYYGDGF-FGENNEFCECYTCERRGT 267
Query: 168 IGAKK 172
K
Sbjct: 268 GAFKS 272
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 117 bits (296), Expect = 3e-34
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 28 PPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSL 87
+ V + G+G+ A ++G+ V E + + + +Y F S
Sbjct: 4 DRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTAL--------EDYLF-SR 54
Query: 88 DNSRYIDAGKKGNLARFMNHSCEPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
N + G NHS +PN +G R+ +F ++ + G E+ +Y
Sbjct: 55 KNMSAMALG----FGAIFNHSKDPNA--RHELTAGLKRMRIFTIKPIAIGEEITISY 105
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 110 bits (275), Expect = 1e-29
Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 25/187 (13%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGS--------------RGWGLKALTD 47
+R Q +T Y L F S G + +
Sbjct: 68 TLGGWTARYFQSRGPRQEAALKTHVYRYLRAFLPESGFTILPCTRYSMETNGAKIVSTRA 127
Query: 48 LKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKKGNLARFMNH 107
K+ + + VG + + +E + R ++++ + ++R A A F+NH
Sbjct: 128 WKKNEKLELLVGCIAELRE---ADEGLLRAGENDFSI--MYSTRKRSAQLWLGPAAFINH 182
Query: 108 SCEPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNYELQKADNDGMRRCMCGA--ASCS 165
C+PNC K+ + + LRD+ G E+ Y C C
Sbjct: 183 DCKPNC---KFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKN-EHCECHTCERKGE 238
Query: 166 GFIGAKK 172
G +
Sbjct: 239 GAFRTRP 245
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 101 bits (253), Expect = 2e-26
Identities = 31/150 (20%), Positives = 47/150 (31%), Gaps = 16/150 (10%)
Query: 5 ECNPDSCPARTKCQNR-DFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEMID 63
+ + + D + S G GL + + + Y G I
Sbjct: 87 HFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRIT 146
Query: 64 QKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKK--------GNLARFMNHSCEPNCTA 115
+E++ R + N LSLD ID + +L NHS PNC
Sbjct: 147 HQEVDSRDWAL------NGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIY 200
Query: 116 EKW-TVSGDTRVGLFALRDVPAGTELVFNY 144
+ + + LR V A EL Y
Sbjct: 201 DMFVHPRFGPIKCIRTLRAVEADEELTVAY 230
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator,
alternative initiation, alternative splicing,
DNA-binding, metal-binding, nucleus; 1.79A {Homo
sapiens} PDB: 2jv0_A*
Length = 149
Score = 72.4 bits (177), Expect = 3e-16
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 12/118 (10%)
Query: 30 LEVFNTGSRGWGLKALTDLKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSLDN 89
L G+ A + +G+ +VG+ + ++ + + +
Sbjct: 33 LFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYPNLGWMCIDAT 92
Query: 90 SRYIDAGKKGNLARFMNHSC---EPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
KGN R++N +C E N + + + L+ + G EL+ Y
Sbjct: 93 DPE-----KGNWLRYVNWACSGEEQNLFP----LEINRAIYYKTLKPIAPGEELLVWY 141
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase,
structural genomics, structural G consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.50A {Homo
sapiens}
Length = 152
Score = 70.5 bits (172), Expect = 1e-15
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 10/120 (8%)
Query: 31 EVFNTGSRGWGLKALTDLKRGQFVVEYVGEMIDQKEL-NRRRRDMDRNNDHNYYFLSLDN 89
V G+ + + + G ++ EL + + + L
Sbjct: 23 LVLYIDRFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHE 82
Query: 90 SRYIDA--GKKGNLARFMNHSC---EPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
+ + N F+ + E N A V +++V EL Y
Sbjct: 83 DLWFELSDETLCNWMMFVRPAQNHLEQNLVA----YQYGHHVYYTTIKNVEPKQELKVWY 138
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12,
structural genomics, structural genomics consortium,
SGC, DNA-binding; 2.10A {Homo sapiens}
Length = 170
Score = 67.8 bits (165), Expect = 2e-14
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 34 NTGSRGWGLKALTDLKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYI 93
+ G G+ + T +K G + + G +I + ++ + + N + +I
Sbjct: 35 SIPGEGLGIFSKTWIKAGTEMGPFTGRVIAPEHVDICK---NNNLMWEVFNEDGTVRYFI 91
Query: 94 DAGK--KGNLARFMNHSC---EPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
DA + + ++ + E N V T + A+ +P EL+ Y
Sbjct: 92 DASQEDHRSWMTYIKCARNEQEQNLEV----VQIGTSIFYKAIEMIPPDQELLVWY 143
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1,
structural genomics, structural genomics consortium,
SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Length = 196
Score = 64.0 bits (155), Expect = 7e-13
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPP---LEVFNTGSRGWGLKALTDLKRGQFVVEYV 58
V +P A + + P + G+ + + +G +
Sbjct: 33 YIVNDHPWDSGADGGTSVQAEAS--LPRNLLFKYATNSEEVIGVMSKEYIPKGTRFGPLI 90
Query: 59 GEMIDQKELNRRRRDMDRNNDHNYYFLSLDN-SRYIDA--GKKGNLARFMNHSC---EPN 112
GE+ + + N + + S +ID +K N R++N + E N
Sbjct: 91 GEIYTNDTV-----PKNANRKYFWRIYSRGELHHFIDGFNEEKSNWMRYVNPAHSPREQN 145
Query: 113 CTAEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
A + + ++ +PA EL+ Y
Sbjct: 146 LAA----CQNGMNIYFYTIKPIPANQELLVWY 173
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4,
structural genomics, structural GE consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.15A {Homo
sapiens}
Length = 151
Score = 61.5 bits (149), Expect = 3e-12
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 17/114 (14%)
Query: 39 GWGLKALTDLKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSLDNSR---YIDA 95
G+ + +G+ E+ + N+ + N I
Sbjct: 35 EVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWT-----DKAVNHIWKIYHNGVLEFCIIT 89
Query: 96 --GKKGNLARFMNHSC---EPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
+ N F+ + E N A D ++ +D+P EL+F Y
Sbjct: 90 TDENECNWMMFVRKARNREEQNLVAYPH----DGKIFFCTSQDIPPENELLFYY 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 2e-06
Identities = 46/268 (17%), Positives = 73/268 (27%), Gaps = 98/268 (36%)
Query: 1 DLYVECNPDSCP-AR---TKCQNRDFET---------RNYPP-LEVFNTGSRGWGLKALT 46
DLY + A+ + N +T N P L + G
Sbjct: 1634 DLY-----KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG---------- 1678
Query: 47 DLKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSLDN--SRYIDAGKKGNLARF 104
++G+ + E MI +D F ++ + Y +KG L+
Sbjct: 1679 --EKGKRIRENYSAMI-------FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA- 1728
Query: 105 MNHSCEPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNYELQKADNDGMRRCMCG---- 160
T T+ L E +L+ G
Sbjct: 1729 ---------TQ-------FTQPALTL-------MEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 161 ---A-ASCSGFI------------G--AKKAVPPTSECEKGKEVTRARKALKARRRNRRG 202
A AS + + G + AVP E+ R+ + A R
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVP-------RDELGRSNYGMIAINPGRVA 1818
Query: 203 ASSGGEKGEVPAVVEVCERCGAEGGEML 230
AS E A+ V ER G G ++
Sbjct: 1819 ASFSQE-----ALQYVVERVGKRTGWLV 1841
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 45.2 bits (106), Expect = 6e-06
Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 14/121 (11%)
Query: 28 PPLEVFNTGSRGWGLKALT-DLKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLS 86
+EV S ++ + + +G Y G++ Q + + + ++ Y +
Sbjct: 72 QGMEVVKDTSGESDVRCVNEVIPKGHIFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSID 131
Query: 87 LDNSRYIDAGKKGNLARFMNHSC---EPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFN 143
+ K N R++ S E N A R+ A RD+ G L
Sbjct: 132 GSD------ETKANWMRYVVISREEREQNLLA----FQHSERIYFRACRDIRPGEWLRVW 181
Query: 144 Y 144
Y
Sbjct: 182 Y 182
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 44.5 bits (104), Expect = 1e-05
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 101 LARFMNHSCEPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
+NHSC+PNC+ V + L A+RD+ G EL Y
Sbjct: 201 SISLLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 240
Score = 27.2 bits (59), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 28 PPLEVFNTGSRGWGLKALTDLKRGQFVVE 56
+E F T +RG GL+A+T L+ G+ +
Sbjct: 5 LKVEKFATANRGNGLRAVTPLRPGELLFR 33
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 42.6 bits (99), Expect = 5e-05
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 101 LARFMNHSCEPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
MNHSC PN T + A++++ G E+ +Y
Sbjct: 201 DVALMNHSCCPNVIV----TYKGTLAEVRAVQEIHPGDEVFTSY 240
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 39.9 bits (92), Expect = 4e-04
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 104 FMNHSCEPNCT---------AEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
+NH C PNCT A K R+ L AL + G EL +Y
Sbjct: 203 LVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY 252
Score = 27.2 bits (59), Expect = 5.4
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 28 PPLEVFNTGSRGWGLKALTDLKRGQFVVE 56
+EVF + +G GLKA + +
Sbjct: 7 ENVEVFTSEGKGRGLKATKEFWAADVIFA 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.053
Identities = 6/12 (50%), Positives = 6/12 (50%), Gaps = 3/12 (25%)
Query: 2 LYVECNPDSCPA 13
LY DS PA
Sbjct: 31 LYA---DDSAPA 39
Score = 27.2 bits (59), Expect = 3.4
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 116 EKWTVSG-DTRVGLFALRDVPAGTELVFNYELQ 147
EK + + L+A PA L ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPA---LAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.056
Identities = 25/175 (14%), Positives = 46/175 (26%), Gaps = 61/175 (34%)
Query: 2 LYVECNPDSCPART--KCQNRDFET-RNYPPLEVFNTGSRG---WGLK-ALTDLKRGQFV 54
+ E S R + ++R + + + V SR L+ AL +L+ + V
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLELRPAKNV 153
Query: 55 VEY----------VGEMIDQKE-------------LNRRRRDMD---------RNNDHNY 82
+ ++ + L D N+
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 83 YFLSLDNSRY---IDAGKKGNLARFMNHSCEPNCTAEKWTVSGDTRVGLFALRDV 134
S +S I + + L R + NC L L +V
Sbjct: 214 TSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENC--------------LLVLLNV 253
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens}
SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Length = 293
Score = 31.6 bits (72), Expect = 0.17
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 51 GQFVVEYV-GEMIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKK--------GNL 101
V+ + G I +E++ R+ N LSLD ID + +L
Sbjct: 187 PNTVMSFYNGVRITHQEVD------SRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASL 240
Query: 102 ARFMNHSCEPNCTAEKWTVSGDTRVGLF----ALRDVPAGTELVFNY 144
NHS PNC + + R G LR V A EL Y
Sbjct: 241 GHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEELTVAY 284
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 30.2 bits (67), Expect = 0.61
Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 12/125 (9%)
Query: 38 RGWGLKALTDLKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGK 97
+G L T + E + + N+R D ++ + SR +
Sbjct: 121 QGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLR 180
Query: 98 KGNLAR-----FMNHSCEPNCTAEKWTVSGDTRVG-------LFALRDVPAGTELVFNYE 145
NL +NHS + V G + L + V AG ++ Y+
Sbjct: 181 NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYD 240
Query: 146 LQKAD 150
L K++
Sbjct: 241 LNKSN 245
>1vr5_A Oligopeptide ABC transporter, periplasmic oligope binding protein;
TM1223, periplasmic oligopepti binding, structural
genomics; HET: EPE; 1.73A {Thermotoga maritima} SCOP:
c.94.1.1
Length = 547
Score = 30.1 bits (68), Expect = 0.67
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 15/53 (28%)
Query: 115 AEKWTVSGDTRVGLFALR------DVPAGTEL-----VFNYELQKADNDGMRR 156
AEK + + LR D G L VF +E+ K
Sbjct: 66 AEKGEWVSNNEY-VLTLRKGLRWQD---GVPLTADDVVFTFEIAKKYTGISYS 114
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet,
sugar binding protein, signaling protein; HET: CBS;
2.20A {Vibrio cholerae} PDB: 1zty_A*
Length = 529
Score = 29.7 bits (67), Expect = 0.94
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 14/48 (29%)
Query: 115 AEKWTVSGDTRVGLFALR------DVPAGTEL-----VFNYELQKADN 151
AE + ++ D F +R D G V+++ L KA
Sbjct: 53 AESYKMADDLMSVTFDIRKGVKWSD---GEAFTADDVVYSFGLLKAKP 97
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3
c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A
1bll_E* 2j9a_A* 2ewb_A*
Length = 484
Score = 29.2 bits (66), Expect = 1.2
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 148 KADNDGMRRCMCGAASCSGFIGAKKAV 174
A+ D MR M GAA+ A +
Sbjct: 264 AANMDLMRADMGGAATI---CSAIVSA 287
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 28.8 bits (63), Expect = 1.4
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 3 YVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKR 50
YVEC+P+ + + +YP + G G+++L L
Sbjct: 228 YVECSPNGPGTPQAQECTEAGITSYPTWIIN--GRTYTGVRSLEALAV 273
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509,
center for structural genomic infectious diseases,
csgid, transport prote; 2.43A {Yersinia pestis}
Length = 528
Score = 28.5 bits (64), Expect = 2.4
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 14/48 (29%)
Query: 115 AEKWTVSGDTRVGLFALR------DVPAGTEL-----VFNYELQKADN 151
++ S D + L L+ D G+ L F Y A
Sbjct: 78 LSQYQPSDDGKTWLLTLKPDLKFSD---GSPLTAKDVAFTYNNAAASG 122
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport,
transport protein; 1.55A {Bacillus subtilis} SCOP:
c.94.1.1
Length = 520
Score = 28.4 bits (64), Expect = 2.4
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 14/53 (26%)
Query: 115 AEKWTVSGDTRVGLFALR------DVPAGTEL-----VFNYELQKADNDGMRR 156
AE ++ D G EL VF Y + + + R
Sbjct: 70 AESIKELDGGLAYDVKIKKGVKFHD---GKELTADDVVFTYSVPLSKDYKGER 119
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport,
lipoprotein, bacterial targets at IGS-CNRS, france,
BIGS, structural genomics; 2.72A {Escherichia coli}
SCOP: c.94.1.1
Length = 509
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 115 AEKWTVSGDTRVGLFALR-DVP--AGTEL-----VFNYELQKADNDGMRR 156
AE +TVS D LR + GT+ N + + ++R
Sbjct: 73 AESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPANHLKR 122
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 2.44A {Ralstonia
eutropha}
Length = 332
Score = 28.1 bits (63), Expect = 2.5
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 16/65 (24%)
Query: 150 DNDGMRRCMCGAASCSGFIG-----------AKKAVPPTSECEKGKEVTRARKALKARRR 198
D + + C A + GF+ A+ P EV A L A +
Sbjct: 232 DAEVIASDACRARNEFGFLRMWSIYPAQIQPIVNAMRPDFT-----EVEDAAGILVAAQD 286
Query: 199 NRRGA 203
G
Sbjct: 287 ADWGP 291
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport,
iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli
K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A*
3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A*
3qim_A
Length = 502
Score = 28.1 bits (63), Expect = 2.7
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 14/48 (29%)
Query: 115 AEKWTVSGDTRVGLFALR------DVPAGTEL-----VFNYELQKADN 151
A+ WT S D + F LR + G N+ +
Sbjct: 51 AKSWTHSEDGKTWTFTLRDDVKFSN---GEPFDAEAAAENFRAVLDNR 95
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 27.9 bits (61), Expect = 3.5
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 29 PLEVFNTGSRGWGLKALTDLKRGQFVVE 56
E+ N G+GL+A D+K + +
Sbjct: 94 GFEMVNFKEEGFGLRATRDIKAEELFLW 121
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M*
1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5
2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z*
3pip_Z* 1nwy_Z* 1nwx_Z* ...
Length = 60
Score = 24.8 bits (55), Expect = 5.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 190 RKALKARRRNRRGASSGGEKGEVPAVVEVCERCGA 224
+K K++R RR P + E C +C
Sbjct: 9 KKTSKSKRDMRRSHH----ALTAPNLTE-CPQCHG 38
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5
2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5
2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Length = 60
Score = 24.9 bits (55), Expect = 5.9
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 190 RKALKARRRNRRGASSGGEKGEVPAVVEVCERCGA 224
+K KARR RR P +V C C A
Sbjct: 9 KKTSKARRDARRSHH----ALTPPTLVP-CPECKA 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.418
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,692,861
Number of extensions: 215024
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 48
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)