RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7758
(235 letters)
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 269
Score = 122 bits (308), Expect = 1e-34
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 2 LYVECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEM 61
+ ECN C +C NR + PLE+F T +GWG+++L G F+ Y+GE+
Sbjct: 111 VIYECNSF-CSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEV 169
Query: 62 IDQKELNRRRRDMDRNNDHNYYFLSL---DNSRYIDAGKKGNLARFMNHSCEPNCTAEKW 118
I E +R ++ D + + L + + +DA G+++RF NHSC PN
Sbjct: 170 ITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSA 229
Query: 119 TVSGDT----RVGLFALRDVPAGTELVFNY 144
+ + FA++D+ EL F+Y
Sbjct: 230 VRNHGFRTIYDLAFFAIKDIQPLEELTFDY 259
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 121 bits (304), Expect = 5e-34
Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 29/183 (15%)
Query: 5 ECNPDSCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEMIDQ 64
EC+ C C NR E PL++F T RGWG+K ++KRGQFV Y+GE+I
Sbjct: 103 ECHQ-GCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITS 161
Query: 65 KELNRRRRDMDRNNDHNYYFLSLDN--------------SRYIDAGKKGNLARFMNHSCE 110
+E +RRR + + Y +LD +D RF+NHSC+
Sbjct: 162 EEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCD 221
Query: 111 PNCTAEKWTVSGDT----RVGLFALRDVPAGTELVFNY----------ELQKADNDGMRR 156
PN + LFA++D+P GTEL F+Y + M +
Sbjct: 222 PNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTK 281
Query: 157 CMC 159
C+C
Sbjct: 282 CLC 284
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 107 bits (267), Expect = 1e-29
Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 10/173 (5%)
Query: 10 SCPARTKCQNRDFETRNYPPLEVFNTGSRGWGLKALTDLKRGQFVVEYVGEMIDQKELNR 69
SC + +E+ + S G GL + + + Y G I +E++
Sbjct: 6 SCISTNALLPDPYESERVY-VAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDS 64
Query: 70 RRRDMDRN--NDHNYYFLSLDNSRYIDAGKKGNLARFMNHSCEPNCTAEKWTVSGDT-RV 126
R ++ N + + + + +L NHS PNC + +
Sbjct: 65 RDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIK 124
Query: 127 GLFALRDVPAGTELVFNYELQKADNDGMRRCMCGAASCSGFIGAKKAVPPTSE 179
+ LR V A EL Y + + ++
Sbjct: 125 CIRTLRAVEADEELTVAY------GYDHSPPGKSGPEAPEWYQVELKAFQATQ 171
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
Methyltransferase {Paramecium bursaria chlorella virus
1, PBCV-1 [TaxId: 10506]}
Length = 119
Score = 79.5 bits (195), Expect = 9e-20
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 30 LEVFNTGSRGWGLKALTDLKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSLDN 89
+ V + G+G+ A ++G+ V E + + + D + +
Sbjct: 6 VIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMA---- 61
Query: 90 SRYIDAGKKGNLARFMNHSCEPNCTAEKWTVSGDTRVGLFALRDVPAGTELVFNY 144
NHS +PN +G R+ +F ++ + G E+ +Y
Sbjct: 62 ---------LGFGAIFNHSKDPNARH--ELTAGLKRMRIFTIKPIAIGEEITISY 105
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 39.6 bits (91), Expect = 1e-04
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 12/131 (9%)
Query: 38 RGWGLKALTDLKRGQFVVEYVGEMIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGK 97
+G L T + E + + N+R D ++ + SR +
Sbjct: 120 QGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLR 179
Query: 98 K-----GNLARFMNHSCEPNCTAEKWTVSGDTRVG-------LFALRDVPAGTELVFNYE 145
+A +NHS + V G + L + V AG ++ Y+
Sbjct: 180 NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYD 239
Query: 146 LQKADNDGMRR 156
L K++ +
Sbjct: 240 LNKSNAELALD 250
>d1dqga_ b.42.2.2 (A:) Mannose receptor {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 134
Score = 28.7 bits (63), Expect = 0.34
Identities = 10/70 (14%), Positives = 21/70 (30%)
Query: 59 GEMIDQKELNRRRRDMDRNNDHNYYFLSLDNSRYIDAGKKGNLARFMNHSCEPNCTAEKW 118
+ N + +S+ + K + A ++C+ +KW
Sbjct: 21 AISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDWASVTLYACDSKSEYQKW 80
Query: 119 TVSGDTRVGL 128
DT G+
Sbjct: 81 ECKNDTLFGI 90
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 27.1 bits (58), Expect = 2.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 115 AEKWTVSGDTRVGLFALRD 133
A+ WT S D + F LRD
Sbjct: 49 AKSWTHSEDGKTWTFTLRD 67
>d1dpea_ c.94.1.1 (A:) Dipeptide-binding protein {Escherichia coli
[TaxId: 562]}
Length = 507
Score = 27.0 bits (58), Expect = 2.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 115 AEKWTVSGDTRVGLFALRD 133
AEKW VS D + F LR
Sbjct: 51 AEKWEVSEDGKTYTFHLRK 69
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 25.0 bits (54), Expect = 3.1
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 202 GASSGGEKGEVPAVVE-VCERCGAEGGEMLRC 232
SSG E+G V+ C +G ML C
Sbjct: 3 SGSSGMERGVDNWKVDCKCGTKDDDGERMLAC 34
>d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli
[TaxId: 562]}
Length = 487
Score = 26.6 bits (57), Expect = 3.4
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 115 AEKWTVSGDTRVGLFALRD---VPAGTEL-----VFNYELQKADNDGMRRCMC 159
AE +TVS D LR+ GT+ N + + ++R
Sbjct: 51 AESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPANHLKRHNL 103
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022,
C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 70
Score = 24.7 bits (54), Expect = 3.5
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 208 EKGEVPAVVEVCERCGAE 225
+ V+ E G +
Sbjct: 4 RTARLIGKVDFVEALGTD 21
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 58
Score = 23.8 bits (52), Expect = 4.6
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 18/55 (32%)
Query: 170 AKKAVPPTSECEKGKEVTRARKALKARRRNRRGASSGGEKGEVPAVVEVCERCGA 224
AK VP +K K++R RR P + E C +C
Sbjct: 1 AKHPVP-------------KKKTSKSKRDMRRSH----HALTAPNLTE-CPQCHG 37
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus
thermophilus [TaxId: 274]}
Length = 59
Score = 23.8 bits (52), Expect = 5.6
Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 18/55 (32%)
Query: 170 AKKAVPPTSECEKGKEVTRARKALKARRRNRRGASSGGEKGEVPAVVEVCERCGA 224
AK VP +K KARR RR P +V C C A
Sbjct: 1 AKHPVP-------------KKKTSKARRDARRSH----HALTPPTLVP-CPECKA 37
>d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA)
{Bacillus subtilis [TaxId: 1423]}
Length = 504
Score = 25.8 bits (55), Expect = 6.2
Identities = 2/19 (10%), Positives = 4/19 (21%)
Query: 115 AEKWTVSGDTRVGLFALRD 133
AE ++
Sbjct: 54 AESIKELDGGLAYDVKIKK 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.418
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 907,036
Number of extensions: 41796
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 19
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)