RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7765
         (77 letters)



>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family. 
          Length = 212

 Score = 56.8 bits (138), Expect = 1e-11
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 1   MFWITNSIYTERYMGLPEMYDNEVGY-NWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQS 59
            +    S +TERYM     +DNE GY   +  +           LL+HG  DD V   ++
Sbjct: 103 TYMSDTSPFTERYMEWGNPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEA 162

Query: 60  MMLAKALEAADIFF 73
           + L  AL+A     
Sbjct: 163 LKLVAALQAKGKNV 176


>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
           [Amino acid transport and metabolism].
          Length = 620

 Score = 44.1 bits (104), Expect = 7e-07
 Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 3   WITNSIYTERYMGLPE-----MYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQ 57
            +     TE     PE       ++   Y          N +    LL+HG  DD V  +
Sbjct: 510 LLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIFYADN-IKTPLLLIHGEEDDRVPIE 568

Query: 58  QSMMLAKALEAADI 71
           Q+  L  AL+    
Sbjct: 569 QAEQLVDALKRKGK 582


>gnl|CDD|182555 PRK10566, PRK10566, esterase; Provisional.
          Length = 249

 Score = 33.4 bits (77), Expect = 0.004
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 30  DVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKALEAAD 70
           +VT ++    ++  LL HG ADD V   +S+ L +AL    
Sbjct: 176 EVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERG 216


>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating).
            This model does not specify whether the cofactor is
           NADP only (EC 1.1.1.44), NAD only, or both. The model
           does not assign an EC number for that reason [Energy
           metabolism, Pentose phosphate pathway].
          Length = 467

 Score = 26.2 bits (58), Expect = 1.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 53  NVHYQQSMMLAKALEAADIFF 73
           N HY  +    K L+A  I F
Sbjct: 99  NSHYPDTERRYKELKAKGILF 119


>gnl|CDD|151499 pfam11053, DNA_Packaging, Terminase DNA packaging enzyme.  Phage
          T4 terminase functions in packaging concatemeric DNA.
          The T4 terminase is composed of a large subunit, gp17
          ad a small subunit, gp16. The role of gp16 is not well
          characterized however it is known that it binds to
          double-stranded DNA but not single stranded DNA.
          Length = 153

 Score = 25.6 bits (56), Expect = 2.5
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 47 HGTADDNVHYQQSMMLA---KALEAA 69
          +     N+H+QQ M++     ALE A
Sbjct: 51 YSLVRRNMHFQQQMLMDAAKIALENA 76


>gnl|CDD|234496 TIGR04198, paramyx_RNAcap, mRNA capping enzyme, paramyxovirus
           family.  This model represents a common C-terminal
           region shared by paramyxovirus-like RNA-dependent RNA
           polymerases (see model pfam00946). Polymerase proteins
           described by these two models are often called L protein
           (large polymerase protein). Capping of mRNA requires RNA
           triphosphatase and guanylyl transferase activities,
           demonstrated for the rinderpest virus L protein and at
           least partially localized to the region of this model.
          Length = 893

 Score = 25.5 bits (56), Expect = 3.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 48  GTADDNVHYQQSMMLA 63
           G  + N+ +QQ M+L 
Sbjct: 91  GGKNYNLIFQQVMLLG 106


>gnl|CDD|222891 PHA02585, 16, small terminase protein; Provisional.
          Length = 161

 Score = 25.1 bits (55), Expect = 3.5
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 47 HGTADDNVHYQQSMMLA---KALEAA 69
          +     N+H+QQ M++     ALE A
Sbjct: 48 YSLVRRNMHFQQQMLMDAAKIALENA 73


>gnl|CDD|221807 pfam12850, Metallophos_2, Calcineurin-like phosphoesterase
           superfamily domain.  Members of this family are part of
           the Calcineurin-like phosphoesterase superfamily.
          Length = 146

 Score = 24.9 bits (55), Expect = 4.0
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 33  RKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKALEAADIFFY 74
             V        L++HG      H    ++  +    AD+ F+
Sbjct: 66  ELVLTLGGFRILVVHGHPYGVKHGLAELLAKEG--GADVVFF 105


>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
           only].
          Length = 207

 Score = 24.2 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 41  KTFLLMHGTADDNVHYQQSMMLAKALEAA 69
              LL HGT D  V    +  LA+ L A+
Sbjct: 147 TPILLSHGTEDPVVPLALAEALAEYLTAS 175


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,909,552
Number of extensions: 283982
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 12
Length of query: 77
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 31
Effective length of database: 8,897,318
Effective search space: 275816858
Effective search space used: 275816858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)