RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7765
(77 letters)
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 99.1 bits (247), Expect = 2e-26
Identities = 34/71 (47%), Positives = 43/71 (60%)
Query: 6 NSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKA 65
S+YTER+MGLP DN Y + V + F N +LL+HGTADDNVH+Q S +AKA
Sbjct: 619 ASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKA 678
Query: 66 LEAADIFFYQQ 76
L A + F
Sbjct: 679 LVNAQVDFQAM 689
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 96.1 bits (239), Expect = 2e-25
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 6 NSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKA 65
S ++ERY+GL + Y T V +V + FL++H TAD+ +H+Q + L
Sbjct: 623 ASAFSERYLGLHG--LDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQ 680
Query: 66 LEAADIFFYQQ 76
L + Q
Sbjct: 681 LIRGKANYSLQ 691
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 95.7 bits (238), Expect = 3e-25
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 6 NSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKA 65
+S+YTERYMGLP DN Y + V + NF +LL+HGTADDNVH+QQS ++KA
Sbjct: 625 DSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKA 684
Query: 66 LEAADIFFYQQ 76
L + F
Sbjct: 685 LVDVGVDFQAM 695
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 93.2 bits (232), Expect = 3e-24
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 6 NSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKA 65
+S YTERYM LP N+ GY V + + LL+HG ADDNV + S L A
Sbjct: 643 DSHYTERYMDLPA--RNDAGYREARVLTHIEGLRSP-LLLIHGMADDNVLFTNSTSLMSA 699
Query: 66 LEAADIFF 73
L+ F
Sbjct: 700 LQKRGQPF 707
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 90.5 bits (225), Expect = 2e-23
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 6 NSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKA 65
+Y ERY P+ +N GY+ ++ ++ G+ + +L+HG D V +Q S++ A
Sbjct: 610 AIMYGERYFDAPQ--ENPEGYDAANLLKRAGDLKGR-LMLIHGAIDPVVVWQHSLLFLDA 666
Query: 66 LEAADIFF 73
A +
Sbjct: 667 CVKARTYP 674
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 41.4 bits (97), Expect = 4e-06
Identities = 9/73 (12%), Positives = 15/73 (20%), Gaps = 1/73 (1%)
Query: 2 FWITNSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMM 61
W + L + + + LL+ D V +
Sbjct: 139 HWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQYKGDV-LLVEAENDVIVPHPVMRN 197
Query: 62 LAKALEAADIFFY 74
A A A
Sbjct: 198 YADAFTNARSLTS 210
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 41.4 bits (97), Expect = 4e-06
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADI 71
+ D V ++ A AL A I
Sbjct: 208 TFIWTTADDPIVPATNTLAYATALATAKI 236
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 39.8 bits (93), Expect = 2e-05
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADI 71
+ D++V S+ +A+ +
Sbjct: 194 AFVWQTATDESVPPINSLKYVQAMLQHQV 222
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 39.4 bits (92), Expect = 2e-05
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADI 71
+ H D+ V S+ L +
Sbjct: 191 TFIWHTADDEGVPIYNSLKYCDRLSKHQV 219
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 38.5 bits (89), Expect = 5e-05
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADI 71
L+H +D+ + +Q+ L L+ +
Sbjct: 215 MHLVHSYSDELLTLRQTNCLISCLQDYQL 243
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 36.1 bits (83), Expect = 4e-04
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAA 69
++ D +QS A L
Sbjct: 239 IYVVAAEHDSTTFIEQSRHYADVLRKK 265
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 35.0 bits (81), Expect = 7e-04
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 44 LLMHGTADDNVHYQQSMMLAKALEAADI 71
L++HG D+ V Y+ S+ +K + +
Sbjct: 193 LIVHGDQDEAVPYEASVAFSKQYKNCKL 220
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 34.5 bits (79), Expect = 0.001
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADI 71
+ G A+ Q++ L +A +A +
Sbjct: 207 VTVWVGGAERPAFLDQAIWLVEAWDADHV 235
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 34.7 bits (79), Expect = 0.001
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAAD 70
+ H D V + S +L K L
Sbjct: 311 IWVFHAEDDPVVPVENSRVLVKKLAEIG 338
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 33.5 bits (76), Expect = 0.003
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 2 FWITNSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMM 61
F + E + + ++ V + + ++ G AD +V YQ ++
Sbjct: 172 FEEVSEYSPEPNIFTRALMED---GRANRVMAGMIDT-GCPVHILQGMADPDVPYQHALK 227
Query: 62 LAKALEAADIFF 73
L + L A D+
Sbjct: 228 LVEHLPADDVVL 239
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 33.2 bits (75), Expect = 0.003
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 30 DVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKALEAA 69
+ + L +HG+ D V + +AL
Sbjct: 162 PPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPH 201
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 32.5 bits (74), Expect = 0.006
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 28 WTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKALEAADI 71
+ F K L+HGT D V S + + + +
Sbjct: 196 QLPIYEVSAQF-TKPVCLIHGTDDTVVSPNASKKYDQIYQNSTL 238
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 32.3 bits (73), Expect = 0.008
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADIFFY 74
+ DD V ++ + + Y
Sbjct: 203 LIAFTANNDDWVKQEEVYDMLAHIRTGHCKLY 234
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 31.9 bits (72), Expect = 0.011
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAA 69
L+ G D Q + L ++L+A
Sbjct: 191 VLITAGERDPICPVQLTKALEESLKAQ 217
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 31.3 bits (71), Expect = 0.016
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 44 LLMHGTADDNVHYQQSMMLAKALEAADI 71
L+H + + L L A
Sbjct: 517 ALIHPQNASRTPLKPLLRLMGELLARGK 544
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 31.3 bits (71), Expect = 0.017
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 9/63 (14%)
Query: 17 PEMYDNEVGYNWTDVTR--------KVGNFVNKTFLLMHGTADDNVHYQQSMMLAKALEA 68
D +G R + V FLL+ G D +Q +A+
Sbjct: 552 SRYLDFLIGSFEEFPERYRDRAPLTRADR-VRVPFLLLQGLEDPVCPPEQCDRFLEAVAG 610
Query: 69 ADI 71
+
Sbjct: 611 CGV 613
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 30.6 bits (69), Expect = 0.024
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 37 NFVNKTFLLMHGTADDNVHYQQSMMLAKALEAADI 71
N K+ + GT D +S L LE A+
Sbjct: 163 NLAGKSVFIAAGTNDPICSSAESEELKVLLENANA 197
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 30.2 bits (68), Expect = 0.034
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKAL 66
+ H D +V ++S + +
Sbjct: 212 VFIAHCNGDYDVPVEESEHIMNHV 235
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 29.4 bits (65), Expect = 0.077
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 39 VNKTFLLMHGTADDNVH-YQQSMMLAKALEAA 69
TFL + G D N + K L+A
Sbjct: 331 AESTFLFLVGQDDHNWKSEFYANEACKRLQAH 362
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 29.4 bits (66), Expect = 0.079
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 40 NKTFLLMHGTADDNVHYQQSMMLAKALEAA 69
+K L + D V + L LE +
Sbjct: 149 DKHVFLSYAPNDMIVPQKNFGDLKGDLEDS 178
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 29.3 bits (65), Expect = 0.087
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAA 69
L + G +D+ +QS +L +
Sbjct: 336 SLFLVGAGEDSELMRQSQVLYDNFKQR 362
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 28.9 bits (65), Expect = 0.13
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAAD 70
FLL+ G+AD + + +L + ++ D
Sbjct: 249 FLLLQGSADRLCDSKGAYLLMELAKSQD 276
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 27.6 bits (62), Expect = 0.29
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAAD 70
FLL+ G+AD + + +L + ++ D
Sbjct: 231 FLLLQGSADRLCDSKGAYLLMELAKSQD 258
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 27.5 bits (61), Expect = 0.31
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 37 NFVNKTFLLMHGTADDNVHYQQSMMLAKALEAA 69
+ L++ G AD+ + L L
Sbjct: 155 DLAGIRTLIIAGAADE-TYGPFVPALVTLLSRH 186
>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural
genomics, joint cente structural genomics, JCSG; HET:
MSE; 1.15A {Legionella pneumophila subsp}
Length = 377
Score = 27.6 bits (60), Expect = 0.32
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 44 LLMHGTADDNVHYQQSMMLAKALEAA 69
LL+ D +V Y + M +
Sbjct: 311 LLVGTKGDRDVPYAGAEMAYHSFRKY 336
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 27.6 bits (60), Expect = 0.38
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 44 LLMHGTADDNVHYQQSMMLAKALEAA 69
LL + D V + + + +
Sbjct: 329 LLCGSSNDATVPLKNAQTAIASFQQR 354
>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine
hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo
sapiens} SCOP: c.69.1.14
Length = 232
Score = 27.4 bits (61), Expect = 0.41
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADIFF 73
L HG D V + + L+
Sbjct: 168 ILQCHGDCDPLVPLMFGSLTVEKLKTLVNPA 198
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 27.4 bits (61), Expect = 0.42
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADI 71
L +HG+ DD V AL+A +
Sbjct: 169 VLHLHGSQDDVVDPALGRAAHDALQAQGV 197
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
hydrolase; 1.72A {Homo sapiens}
Length = 239
Score = 27.1 bits (60), Expect = 0.45
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADI 71
HGTAD+ V + + L++ +
Sbjct: 173 LFQCHGTADELVLHSWAEETNSMLKSLGV 201
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 27.0 bits (60), Expect = 0.46
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADI 71
L +HG DD V + L++ +
Sbjct: 160 ALCLHGQYDDVVQNAMGRSAFEHLKSRGV 188
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 26.7 bits (58), Expect = 0.63
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 39 VNKTFLLMHGTADDNVH-YQQSMMLAKALEAADIFFYQQ 76
LL+ G D N + +++ L+A Q
Sbjct: 315 AQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQI 353
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 26.9 bits (59), Expect = 0.68
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAADIFF 73
++HG D+ V + + + A +
Sbjct: 306 TYILHGVHDE-VPLSFVDTVLELVPAEHLNL 335
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC,
protein kinase, transfe; HET: LDN FLC; 1.82A {Homo
sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 26.2 bits (58), Expect = 1.0
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 10 TERYMGLPEMYDNEVGYNWTDVTRKV 35
T+RYM PE+ D + + D ++V
Sbjct: 180 TKRYMA-PEVLDETIQVDCFDSYKRV 204
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Length = 208
Score = 25.4 bits (55), Expect = 2.0
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 44 LLMHGTADDNVHYQQSMMLAKAL 66
L++ G D+ V ++Q +
Sbjct: 154 LIVQGDQDEVVPFEQVKAFVNQI 176
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 25.1 bits (55), Expect = 2.8
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 12 RY---MGLPEMYDNEVGYNWTDVTRKV--------GNFVNKTFLLMH 47
RY +PE D++ ++++D ++ GNFV++ ++
Sbjct: 368 RYYLTTIMPETRDSD--FSFSDFKVRINEELVNNLGNFVHRALTFVN 412
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 24.7 bits (54), Expect = 3.2
Identities = 2/28 (7%), Positives = 12/28 (42%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAAD 70
++ D+ ++ + ++ +E+
Sbjct: 185 TFVVQARHDEMINPDSANIIYNEIESPV 212
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 24.6 bits (54), Expect = 3.7
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 10 TERYMGLPEMYDNEVGYNWTDVTRKV 35
T+RYM PE+ D+ + + ++
Sbjct: 175 TKRYMA-PEVLDDSINMKHFESFKRA 199
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 24.5 bits (54), Expect = 4.4
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 10/39 (25%)
Query: 17 PEMYDNEVGYNWTDVTRKV--------GNFVNKTFLLMH 47
+ D + N D ++V N ++ ++
Sbjct: 378 SRIDDID--LNLEDFVQRVNADIVNKVVNLASRNAGFIN 414
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 24.4 bits (53), Expect = 4.4
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 43 FLLMHGTADDNVHYQQSMMLAKALEAAD 70
L+ D V + ++ + + + +
Sbjct: 208 ALIFVSDEDHVVPPGNADIIFQGISSTE 235
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase,
mandelate racemase subgroup, enzyme function initia EFI;
1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Length = 400
Score = 24.5 bits (54), Expect = 4.5
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
H +M +AKAL F++
Sbjct: 217 FHS----MWQLLPAMQIAKALTPYQTFWH 241
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
{Saccharomyces cerevisiae}
Length = 370
Score = 24.3 bits (53), Expect = 4.7
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 4 ITNSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKT 42
I + ++Y+ L + Y W D T GN +K
Sbjct: 6 IEKTQILQKYLELDQRGRIIAEYVWIDGT---GNLRSKG 41
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein;
enolase, Mg ION, PSI-2, NYSGXRC, structural genomics;
2.90A {Rubrobacter xylanophilus dsm 9941}
Length = 410
Score = 24.1 bits (53), Expect = 4.9
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
MHG S+ A+A+E + +
Sbjct: 217 MHG----RFDIPSSIRFARAMEPFGLLWL 241
>2gl5_A Putative dehydratase protein; structural genomics, protein
structure initiati nysgxrc; 1.60A {Salmonella
typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Length = 410
Score = 24.2 bits (53), Expect = 5.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
+H + ++ AKA+E IF Y
Sbjct: 225 IHS----LLGTNSAIQFAKAIEKYRIFLY 249
>2o56_A Putative mandelate racemase; dehydratase, structural genomics,
protein structure initiati 2; 2.00A {Salmonella
typhimurium}
Length = 407
Score = 24.2 bits (53), Expect = 5.5
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
MH ++ + +E IF+Y
Sbjct: 222 MHA----FTDTTSAIQFGRMIEELGIFYY 246
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein;
enolase, dehydratase, enzyme function initiative, EFI,
lyase; 1.80A {Enterobacter SP}
Length = 422
Score = 23.7 bits (52), Expect = 6.5
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
+H + QQ++ LAK LE +F
Sbjct: 229 VHE----RLFPQQAVQLAKQLEPFQPYFI 253
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain
protein; aldolase, structural genomics, biology; 2.90A
{Labrenzia alexandrii}
Length = 404
Score = 23.8 bits (52), Expect = 6.8
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
HG + LA+ LEA D ++
Sbjct: 215 THG----QFTVSGAKRLARRLEAYDPLWF 239
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural
genomics, protein structure initiative, PSI, nysgrc;
1.80A {Zymomonas mobilis}
Length = 403
Score = 23.7 bits (52), Expect = 7.0
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
HG + ++ AKA+E +IFFY
Sbjct: 216 NHG----HTDLVSAIQFAKAIEEFNIFFY 240
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics,
isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB:
2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Length = 409
Score = 23.8 bits (52), Expect = 7.3
Identities = 4/29 (13%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
++ N + + + + L D+F+
Sbjct: 220 LNF----NAKPEGYLKILRELADFDLFWV 244
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function
initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio
japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A*
3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Length = 424
Score = 23.7 bits (52), Expect = 7.4
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
+H + ++ L KALE +F+
Sbjct: 233 VHH----RLTPIEAARLGKALEPYHLFWM 257
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase,
aldolase, structural genomics, biology; 1.35A
{Unidentified}
Length = 412
Score = 23.8 bits (52), Expect = 7.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
HG + ++ LAK LE D ++
Sbjct: 208 THG----QMVPSSAIRLAKRLEKYDPLWF 232
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold,
mannonate dehydratase, D-mannonate, lyase; HET: CS2;
1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A
2qjn_A* 2qjm_A*
Length = 418
Score = 23.7 bits (52), Expect = 7.7
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
H Q++ L K LE +F+
Sbjct: 227 GHH----RYTPQEAANLGKMLEPYQLFWL 251
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport
systems, photosynthesis, cyanobacteria, disulfide bond,
metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Length = 321
Score = 23.5 bits (51), Expect = 8.2
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 30 DVTRKV-GNFVNKTFLLMHGTADDNVH-YQQSMMLAKALEAADIFFY 74
D+ + V G+ + + G +H Y+ + + AD+ Y
Sbjct: 57 DMVQNVAGDKLVVESITRIGA---EIHGYEPTPSDIVKAQDADLILY 100
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate
dehydratase related protein, enzyme funct intitiative,
lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis}
PDB: 3tw9_A 3twa_A 3twb_A*
Length = 440
Score = 23.8 bits (52), Expect = 8.2
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
H + ++ +AKALE +FF
Sbjct: 247 AHE----RITPINAIHMAKALEPYQLFFL 271
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 23.5 bits (51), Expect = 8.5
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 44 LLMHGTADDNVHYQQSMMLAKALEAA 69
+M G D V YQ+ + L E
Sbjct: 212 KIMVGRNDQVVGYQEQLKLINHNENG 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 23.7 bits (51), Expect = 8.7
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 2 FWITNSIYTERYMGLPEMYDNE----VGYNW 28
+ + S +E+ M LPEM E V +N
Sbjct: 208 WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI 238
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 23.7 bits (50), Expect = 8.8
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 43 FLLMHGTADDNVHYQQSMM-LAKALEAADIFFY 74
+ G D + QS + E A+ Y
Sbjct: 308 IIFTEGGLDRDFRLVQSAYAASGKPENAEFHHY 340
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium
binding site, lyase; 1.95A {Ralstonia pickettii} PDB:
3rra_A
Length = 405
Score = 23.4 bits (51), Expect = 9.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 54 VHYQQSMMLAKALEAADIFFY 74
V + +L K LE F
Sbjct: 189 VSAPMAKVLIKELEPYRPLFI 209
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Length = 410
Score = 23.4 bits (51), Expect = 9.3
Identities = 3/29 (10%), Positives = 8/29 (27%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
+H + + AL + +
Sbjct: 220 LHS----LWGTHAAARICNALADYGVLWV 244
>3lzq_A P19 protein; copper binding, iron transport, iron uptake, P19
delition, T protein; 1.41A {Campylobacter jejuni} PDB:
3lzn_A 3lzo_A 3lzp_A 3lzl_A 3lzr_A
Length = 159
Score = 23.5 bits (50), Expect = 9.7
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 34 KVGNFVNKTFLLMHGTADDNVHYQQSMMLAKALEAA 69
K LM ADD HY ++ + K +
Sbjct: 74 NTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGG 109
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold,
acid sugar dehydratase, D-araninonate, isomera; HET: EPE
D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A
3dfh_A 3s47_A 3gy1_A
Length = 401
Score = 23.3 bits (51), Expect = 9.7
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 54 VHYQQSMMLAKALEAADIFFY 74
+ Q++ AK +E +F
Sbjct: 212 LFPNQAIQFAKEVEQYKPYFI 232
>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function
initiative, isomerase; 2.00A {Pectobacterium carotovorum
subsp}
Length = 426
Score = 23.3 bits (51), Expect = 9.8
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 46 MHGTADDNVHYQQSMMLAKALEAADIFFY 74
MH + ++ K++E +F+
Sbjct: 235 MHH----RLTPIEAARFGKSVEDYRLFWM 259
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.421
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,197,007
Number of extensions: 52734
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 75
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)