RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7765
(77 letters)
>d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus
subtilis [TaxId: 1423]}
Length = 318
Score = 32.4 bits (72), Expect = 0.002
Identities = 10/68 (14%), Positives = 14/68 (20%)
Query: 1 MFWITNSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSM 60
R G PE + + + V L+ G D
Sbjct: 219 EQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVF 278
Query: 61 MLAKALEA 68
LE
Sbjct: 279 AAYNHLET 286
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 32.3 bits (73), Expect = 0.002
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 37 NFVNKTFLLMHGTADDNVHYQQSMMLAKALEAAD 70
N + + G++D V L L D
Sbjct: 87 NLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFD 120
>d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga
maritima [TaxId: 2336]}
Length = 322
Score = 31.6 bits (70), Expect = 0.004
Identities = 11/63 (17%), Positives = 13/63 (20%), Gaps = 3/63 (4%)
Query: 9 YTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKT---FLLMHGTADDNVHYQQSMMLAKA 65
Y E L D E T NF + L G D+
Sbjct: 228 YAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNY 287
Query: 66 LEA 68
Sbjct: 288 YAG 290
>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like
protein 6, DPP6, C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 258
Score = 30.5 bits (67), Expect = 0.012
Identities = 15/71 (21%), Positives = 25/71 (35%)
Query: 1 MFWITNSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSM 60
+ L + Y T V +V + FL++H TAD+ +H+Q +
Sbjct: 151 ITDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTA 210
Query: 61 MLAKALEAADI 71
L L
Sbjct: 211 ELITQLIRGKA 221
>d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase
IroE {Escherichia coli [TaxId: 562]}
Length = 265
Score = 30.3 bits (67), Expect = 0.014
Identities = 2/53 (3%), Positives = 9/53 (16%)
Query: 19 MYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKALEAADI 71
+ T+ + + + L+ +
Sbjct: 183 LSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGV 235
>d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 263
Score = 29.5 bits (64), Expect = 0.025
Identities = 9/71 (12%), Positives = 23/71 (32%)
Query: 1 MFWITNSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSM 60
+ + +T E +K + + L+H +D+ + +Q+
Sbjct: 163 IEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTN 222
Query: 61 MLAKALEAADI 71
L L+ +
Sbjct: 223 CLISCLQDYQL 233
>d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492
{Silicibacter sp. tm1040 [TaxId: 292414]}
Length = 261
Score = 28.5 bits (62), Expect = 0.055
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 37 NFVNKTFLLMHGTADDNVHYQQSMMLAKALEAADI 71
N + + G A+ Q++ L +A +A +
Sbjct: 200 NRYDAKVTVWVGGAERPAFLDQAIWLVEAWDADHV 234
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 28.4 bits (62), Expect = 0.076
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 3 WITNSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKT---FLLMHGTADDNVHYQQS 59
+ N + E + E++ + + D + V T + DD V ++
Sbjct: 157 ELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEV 216
Query: 60 MMLAKALEAADIFFY 74
+ + Y
Sbjct: 217 YDMLAHIRTGHCKLY 231
>d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 280
Score = 26.3 bits (56), Expect = 0.40
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 37 NFVNKTFLLMHGTADDNVHYQQSMMLAKALEAADIFFYQQD 77
+ + LL+ DD V S+ L+ +Q+
Sbjct: 197 DIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQN 237
>d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 258
Score = 25.2 bits (53), Expect = 0.89
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 1 MFWITNSIYTERYMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSM 60
+ +S+YTERYMGLP DN Y + V + NF +LL+HGTADDNVH+QQS
Sbjct: 150 RWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSA 209
Query: 61 MLAKALEAADI 71
++KAL +
Sbjct: 210 QISKALVDVGV 220
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 24.8 bits (54), Expect = 1.00
Identities = 7/69 (10%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 14 MGLPEMYDNEVGYNWTDVT-------RKVGNFVNKTFLLMHGTADDNVHYQQSMM----L 62
++ ++ + ++ R V + +L T +N+ + +
Sbjct: 65 PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 124
Query: 63 AKALEAADI 71
+A + A+
Sbjct: 125 VEAAKMANA 133
>d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic
domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]}
Length = 246
Score = 24.1 bits (51), Expect = 2.0
Identities = 6/59 (10%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 13 YMGLPEMYDNEVGYNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKALEAADI 71
P + G + + +L G + + + + L L
Sbjct: 157 SYWWPHRGGQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKE 214
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
{Treponema pallidum [TaxId: 160]}
Length = 277
Score = 23.8 bits (50), Expect = 2.4
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 26 YNWTDVTRKVGNFVNKTFLLMHGTADDNVH-YQQSMMLAKALEAADIFFYQ 75
D + + LM D H Y + + L AD+ Y
Sbjct: 10 GMIADAVKNIAQGDVHLKGLMGPGVD--PHLYTATAGDVEWLGNADLILYN 58
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 289
Score = 23.7 bits (50), Expect = 3.1
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 26 YNWTDVTRKVGNFVNKTFLLMHGTADDNVH-YQQSMMLAKALEAADIFFY 74
K+G + + +L+ G D H Y+ AL A+ +
Sbjct: 10 PPQQYFLEKIGGDLVRVSVLVPGNND--PHTYEPKPQQLAALSEAEAYVL 57
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis
sp. pcc 6803 [TaxId: 1148]}
Length = 279
Score = 23.3 bits (49), Expect = 4.1
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 26 YNWTDVTRKVGNFVNKTFLLMHGTADDNVHYQQSMMLAKALEAADIFFY 74
D+ + V + A+ + Y+ + + AD+ Y
Sbjct: 14 TVLADMVQNVAGDKLVVESITRIGAEIH-GYEPTPSDIVKAQDADLILY 61
>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing
endonuclease, C-terminal domain {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 97
Score = 22.1 bits (47), Expect = 8.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 27 NWTDVTRK--VGNFVNKTFLLMHGTADDNVHY 56
+++T V + V K L+ AD ++ Y
Sbjct: 58 LLSELTGFVRVAHSVRKKLLIAIVDADGDIVY 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.421
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 294,006
Number of extensions: 10126
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 20
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.6 bits)