BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7767
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 60/94 (63%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q + WSPVGH L +V +N++Y + S +T G + V++NGV DWVYEEEVFS
Sbjct: 112 NNTQWITWSPVGHKLAYVWNNDIYVKNEPNLSSQRITWTGKENVIYNGVTDWVYEEEVFS 171
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 150 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 209
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 210 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 243
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 112 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 115 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 174
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 175 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 208
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 112 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 123 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 182
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 183 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 216
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 112 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 112 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 112 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 112 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 112 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 117 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 176
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 177 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 210
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 113 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 172
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 173 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 206
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 118 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 177
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 178 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 211
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 124 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 183
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 184 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 217
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 120 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 179
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 180 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 213
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 120 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 179
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 180 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 213
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 115 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 174
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 175 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 208
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 122 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 181
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 182 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 215
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS
Sbjct: 114 NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 173
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 174 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 207
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%)
Query: 99 QLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFSSTK 158
Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEEVFS+
Sbjct: 123 QWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 182
Query: 159 TLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 183 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 213
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 98 LQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFSST 157
+Q + WSPVG L +V NN+Y +T +G + +FNG+ DWVYEEE+ ++
Sbjct: 112 IQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171
Query: 158 KTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
LW+SP+G LAY +FND + ++Y +YG+
Sbjct: 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD 203
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 81 GRPDTLTDVSDLDGSNFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVL 140
G P +L D ++ + LQ W P G LIF+ +NN+Y + + G +GV+
Sbjct: 101 GDPQSL-DPPEVSNAK-LQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVI 158
Query: 141 FNGVADWVYEEEVFSSTKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE---PGSKTYLY 197
+NG++DW+YEEE+ + W+SPDG+ LAY ND+RV M Y P K Y Y
Sbjct: 159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218
Query: 198 P 198
P
Sbjct: 219 P 219
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 96 NFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
N Q + WS GH L +V N++Y + + +T G + V+FNG+ DWVYEEE+F
Sbjct: 111 NNTQWITWSQEGHKLAYVWKNDIYVKIEPHLPSHRITSTGKENVIFNGINDWVYEEEIFG 170
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE 189
+ LW+SP+G+ LAY +FND V + Y Y +
Sbjct: 171 AYSALWWSPNGTFLAYAQFNDTGVPLIEYSFYSD 204
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 101 VQWSPVGHDLIFVKDNNLYQAY-----DDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
+ +SPVG + +V+++NLY A + A+T DG + +++ V++ E
Sbjct: 126 LDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY---GQAVHQREFGI 182
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYG--EPGSKTYLYP 198
T W SP GS LA+ + + + V + Y E SK YP
Sbjct: 183 EKGTFW-SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP 226
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 101 VQWSPVGHDLIFVKDNNLYQAY-----DDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
+ +SPVG + +V+++NLY A + A+T DG + +++ V++ E
Sbjct: 126 LDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY---GQAVHQREFGI 182
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYG--EPGSKTYLYP 198
T W SP GS LA+ + + + V + Y E SK YP
Sbjct: 183 EKGTFW-SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP 226
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 101 VQWSPVGHDLIFVKDNNLYQAY-----DDFRSINALTRDGIKGVLFNGVADWVYEEEVFS 155
+ +SPVG + +V+++NLY A + A+T DG + +++ V++ E
Sbjct: 126 LDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY---GQAVHQREFGI 182
Query: 156 STKTLWFSPDGSILAYMKFNDARVHNMSYIHYG--EPGSKTYLYP 198
T W SP GS LA+ + + + V + Y E SK YP
Sbjct: 183 EKGTFW-SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP 226
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 37.0 bits (84), Expect = 0.007, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 94 GSNFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEV 153
G F + SP G + F++ NL+ LT DG + NG+A++V +EE+
Sbjct: 150 GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADG-STTIGNGIAEFVADEEM 208
Query: 154 FSSTKTLWFSPDGSILAYMKFNDARV 179
T W++PD S +AY + +++ V
Sbjct: 209 DRHTG-YWWAPDDSAIAYARIDESPV 233
>pdb|1YNF|A Chain A, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|B Chain B, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|C Chain C, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|D Chain D, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|E Chain E, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNF|F Chain F, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 126 RSINALTRDGIKGVLFNGVADWVYEEEVFSSTKTLWFSPDGSILAYMKFNDARVHNMSYI 185
RS+ A + + +FN +EE FS L +A + A HN
Sbjct: 149 RSLEAPVTESLLKAIFN-------DEEKFSVHSAL------PQVALLGDEGAANHNRLGG 195
Query: 186 HYGEPGSKTYLY 197
HYGEPG + ++Y
Sbjct: 196 HYGEPGXQLFVY 207
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 83 PDTLTDVSDLDGSNFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFN 142
PD + D ++ +L LV WS G+ L DN++Y I L + G +
Sbjct: 13 PDRILDAPEIRNDYYLNLVDWSS-GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYIS 71
Query: 143 GVADWVYEEEVF-----SSTKTLWFSPDGSILAYMKFNDARVHNMSYIHY 187
VA W+ E S+ LW L M + ARV ++S+ Y
Sbjct: 72 SVA-WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY 120
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 83 PDTLTDVSDLDGSNFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFN 142
PD + D ++ +L LV WS G+ L DN++Y I L + G +
Sbjct: 93 PDRILDAPEIRNDYYLNLVDWS-SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYIS 151
Query: 143 GVADWVYEEEVF-----SSTKTLWFSPDGSILAYMKFNDARVHNMSYIHY 187
VA W+ E S+ LW L M + ARV ++S+ Y
Sbjct: 152 SVA-WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY 200
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 54 LYLQRSTDIALKLSIRCLTWKQSHSLSGRPDTLTDVSDLDGSNFLQLVQWSPVGHDLIFV 113
LY Q++T + + + R + SL PD + D ++ +L LV WS G+ L
Sbjct: 83 LYSQKATPGSSRKTCRYIP-----SL---PDRILDAPEIRNDYYLNLVDWS-SGNVLAVA 133
Query: 114 KDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVF-----SSTKTLWFSPDGSI 168
DN++Y I L + G + VA W+ E S+ LW
Sbjct: 134 LDNSVYLWSASSGDILQLLQMEQPGEYISSVA-WIKEGNYLAVGTSSAEVQLWDVQQQKR 192
Query: 169 LAYMKFNDARVHNMSYIHY 187
L M + ARV ++S+ Y
Sbjct: 193 LRNMTSHSARVGSLSWNSY 211
>pdb|1YNH|A Chain A, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|B Chain B, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|C Chain C, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|D Chain D, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 126 RSINALTRDGIKGVLFNGVADWVYEEEVFSSTKTLWFSPDGSILAYMKFNDARVHNMSYI 185
RS+ A + + +FN +EE FS L +A + A HN
Sbjct: 149 RSLEAPVTESLLKAIFN-------DEEKFSVHSAL------PQVALLGDEGAANHNRLGG 195
Query: 186 HYGEPGSKTYLY 197
HYGEPG + ++Y
Sbjct: 196 HYGEPGMQLFVY 207
>pdb|1YNI|A Chain A, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNI|B Chain B, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNI|C Chain C, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNI|D Chain D, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 126 RSINALTRDGIKGVLFNGVADWVYEEEVFSSTKTLWFSPDGSILAYMKFNDARVHNMSYI 185
RS+ A + + +FN +EE FS L +A + A HN
Sbjct: 149 RSLEAPVTESLLKAIFN-------DEEKFSVHSAL------PQVALLGDEGAANHNRLGG 195
Query: 186 HYGEPGSKTYLY 197
HYGEPG + ++Y
Sbjct: 196 HYGEPGMQLFVY 207
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 43 TWKQSEYWDYNLYLQRSTDIALKLSIRCLTWKQSHSLSGR--PDTLTDV 89
T + Y+DYN +Q+ D L L+ CL S + P TL D
Sbjct: 296 TEQAGGYYDYNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSLPSTLVDT 344
>pdb|1S3R|A Chain A, Crystal Structure Of The Human-Specific Toxin
Intermedilysin
pdb|1S3R|B Chain B, Crystal Structure Of The Human-Specific Toxin
Intermedilysin
Length = 535
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 76 SHSLSGRPDTLTDVSDLDGSNFLQLVQWSPVGHDLIFVKDNNL 118
S ++G DTL D+ GSNF P+ + FVKDN++
Sbjct: 361 SKVITGNIDTLKDLIQ-KGSNFSAQSPAVPISYTTSFVKDNSI 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,642,148
Number of Sequences: 62578
Number of extensions: 264576
Number of successful extensions: 762
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 58
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)