RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7767
         (200 letters)



>gnl|CDD|216201 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal
           region.  This family is an alignment of the region to
           the N-terminal side of the active site. The Prosite
           motif does not correspond to this Pfam entry.
          Length = 348

 Score =  120 bits (304), Expect = 4e-33
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 4/105 (3%)

Query: 97  FLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFSS 156
            +Q  +WSP GH L +V+DNNLY           +T DG    +FNG+ADWVYEEEVF S
Sbjct: 44  KIQYAKWSPDGHKLAYVRDNNLYVRELATGKETQITSDG-SNGIFNGLADWVYEEEVFGS 102

Query: 157 TKTLWFSPDGSILAYMKFNDARVHNMSYIHYGEPGS---KTYLYP 198
               W+SPDGS LA+++F+++ V  ++   Y + G    ++  YP
Sbjct: 103 NSAYWWSPDGSRLAFLRFDESEVPIITLPDYTDDGPAEVRSIKYP 147


>gnl|CDD|176138 cd08447, PBP2_LTTR_aromatics_like_1, The C-terminal substrate
           binding domain of an uncharacterized LysR-type
           transcriptional regulator similar to regulators involved
           in the catabolism of aromatic compounds, contains type 2
           periplasmic binding fold.  This CD represents the
           substrate binding domain of an uncharacterized LysR-type
           regulator similar to CbnR which is involved in the
           regulation of chlorocatechol breakdown. The
           transcription of the genes encoding enzymes involved in
           such degradation is regulated and expression of these
           enzymes is enhanced by inducers, which are either an
           intermediate in the metabolic pathway or compounds to be
           degraded. This substrate-binding domain shows
           significant homology to the type 2 periplasmic binding
           proteins (PBP2), which are responsible for the uptake of
           a variety of substrates such as phosphate, sulfate,
           polysaccharides, lysine/arginine/ornithine, and
           histidine. The PBP2 bind their ligand in the cleft
           between these domains in a manner resembling a Venus
           flytrap. After binding their specific ligand with high
           affinity, they can interact with a cognate membrane
           transport complex comprised of two integral membrane
           domains and two cytoplasmically located ATPase domains.
           This interaction triggers the ligand translocation
           across the cytoplasmic membrane energized by ATP
           hydrolysis.
          Length = 198

 Score = 31.1 bits (71), Expect = 0.27
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 9/41 (21%)

Query: 75  QSHSLSGRPDTLTDVSDLDGSNFLQLVQWSPVG----HDLI 111
             H L+G  + LT + DLDG  F   + +SP      HDL+
Sbjct: 80  AGHPLAGA-ERLT-LEDLDGQPF---IMYSPTEARYFHDLV 115


>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase.
          Length = 1040

 Score = 30.4 bits (68), Expect = 0.77
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 16/104 (15%)

Query: 20  IHIIECGYIRSTDIALKLSIRCLTWKQSEYWDYNLYLQRSTDIALKLSIRCLTWKQSHSL 79
           IH+I CGY   TD  L+L      W         +Y   + DI     + C  W+  + +
Sbjct: 713 IHVISCGYEDKTDWGLELG-----W---------IYGSITEDILTGFKMHCRGWRSIYCM 758

Query: 80  SGRPDTLTDVSDLDGSNFL-QLVQWSPVGHDLIFVKDNNLYQAY 122
             R       + ++ S+ L Q+++W+    ++ F + + L   Y
Sbjct: 759 PKRA-AFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGY 801


>gnl|CDD|220177 pfam09318, DUF1975, Domain of unknown function (DUF1975).  Members
           of this family of functionally uncharacterized domains
           are predominantly found in the N-terminal region of
           various prokaryotic alpha-glucosyltransferases.
          Length = 203

 Score = 28.4 bits (64), Expect = 2.1
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 100 LVQWSPVGHDL---IFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFSS 156
              ++P  H+L   + + D  +   YD F+ I   T   +   L   ++     E  ++ 
Sbjct: 38  TRDYNPNLHELTKNLGLDDTEVINLYDYFQDIINPTTKTLDD-LIKDLSLPEGLEFEYNP 96

Query: 157 TKTLWFSPDGSILAYMKFNDARVHNMSYIHYGEPGSKTY 195
                +   G ++A + + D     + Y+ Y +P  +  
Sbjct: 97  NDIRIYDQGGQLIARVYYRDETKGTVDYVEYFDPNGRLV 135


>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
           subunit.
          Length = 1044

 Score = 27.6 bits (61), Expect = 4.9
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 20  IHIIECGYIRSTDIALKLSIRCLTWKQSEYWDYNLYLQRSTDIALKLSIRCLTWKQSHSL 79
           IH+I CGY   T+           W +   W   +Y   + DI     + C  WK  + +
Sbjct: 716 IHVISCGYEEKTE-----------WGKEIGW---IYGSVTEDILTGFKMHCRGWKSVYCM 761

Query: 80  SGRP 83
             RP
Sbjct: 762 PKRP 765


>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
          Length = 631

 Score = 27.0 bits (61), Expect = 7.4
 Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 11/49 (22%)

Query: 162 FSPDGSILAYMKFNDARVHNM--SY--------IHY-GEPGSKTYLYPD 199
           F PD  I    KF+  R+     S         I    E   +T+ Y +
Sbjct: 173 FWPDPKIFDSPKFSPERLKERLRSKAFLLPGLTITLNDERERQTFHYEN 221


>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.
          Length = 491

 Score = 27.0 bits (61), Expect = 7.7
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 10/41 (24%)

Query: 118 LYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFSSTK 158
            YQAY D+  +  LT +     L   +A     + V  +TK
Sbjct: 268 FYQAYADYNDMMDLTEE-----LIRHLA-----QAVLGTTK 298


>gnl|CDD|240101 cd04753, Commd5_HCaRG, COMM_Domain containing protein 5, also
           called HCaRG (hypertension-related, calcium-regulated
           gene). HCaRG is a nuclear protein that might be involved
           in cell proliferation; it is negatively regulated by
           extracellular calcium concentration, and its basal mRNA
           levels are higher in hypertensive animals. The COMM
           Domain is found at the C-terminus of a variety of
           proteins; presumably all COMM_Domain containing proteins
           are located in the nucleus and the COMM domain plays a
           role in protein-protein interactions. Several family
           members have been shown to bind and inhibit NF-kappaB.
          Length = 110

 Score = 25.9 bits (57), Expect = 7.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 137 KGVLFNGVADWVYEEEVFSSTKTLWFSPDGSILAYMKFNDARVH 180
           KGV    + D+ +  +V  ST +L      SIL  MK +D + H
Sbjct: 31  KGVRLPHLEDFKWRVDVAISTSSLSRVLQPSILMEMKLSDGKSH 74


>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
          Length = 977

 Score = 26.9 bits (59), Expect = 9.5
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 20  IHIIECGYIRSTDIALKLSIRCLTWKQSEYWDYNLYLQRSTDIALKLSIRCLTWKQSHSL 79
           IH+I CGY   T+           W +   W   +Y   + DI     + C  W+  + +
Sbjct: 648 IHVISCGYEEKTE-----------WGKEIGW---IYGSVTEDILTGFKMHCRGWRSIYCM 693

Query: 80  SGRP 83
             RP
Sbjct: 694 PVRP 697


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,123,920
Number of extensions: 908144
Number of successful extensions: 618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 12
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)