RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7767
(200 letters)
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 118 bits (296), Expect = 4e-31
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 93 DGSNFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEE 152
+ +Q + WSPVG L +V NN+Y +T +G + +FNG+ DWVYEEE
Sbjct: 107 ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE 166
Query: 153 VFSSTKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE---PGSKTYLYP 198
+ ++ LW+SP+G LAY +FND + ++Y +YG+ P + YP
Sbjct: 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 117 bits (295), Expect = 6e-31
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 93 DGSNFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEE 152
+ LQ W P G LIF+ +NN+Y + + G +GV++NG++DW+YEEE
Sbjct: 111 VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170
Query: 153 VFSSTKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE---PGSKTYLYP 198
+ + W+SPDG+ LAY ND+RV M Y P K Y YP
Sbjct: 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 114 bits (286), Expect = 9e-30
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 93 DGSNFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEE 152
N Q V WSPVGH L +V +N++Y + +T G + +++NG+ DWVYEEE
Sbjct: 109 RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168
Query: 153 VFSSTKTLWFSPDGSILAYMKFNDARVHNMSYIHYGEPGS-----KTYLYP 198
VFS+ LW+SP+G+ LAY +FND V + Y Y + YP
Sbjct: 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 106 bits (266), Expect = 5e-27
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 93 DGSNFLQLVQWSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEE 152
G F + SP G + F++ NL+ LT DG + NG+A++V +EE
Sbjct: 149 HGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTI-GNGIAEFVADEE 207
Query: 153 VFSSTKTLWFSPDGSILAYMKFNDARVHNMSYIHYGEPGSK--TYLYP 198
W++PD S +AY + +++ V + YP
Sbjct: 208 -MDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 97.8 bits (244), Expect = 4e-24
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 93 DGSNFLQLVQWSPVGHDLIFVKDNNLY-----QAYDDFRSINALTRDGIKGVLFNGVADW 147
D + + +SPVG + +V+++NLY + + A+T DG + +++
Sbjct: 118 DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG---QA 174
Query: 148 VYEEEVFSSTKTLWFSPDGSILAYMKFNDARVHNMSYIHYGE--PGSKTYLYP 198
V++ E F K ++SP GS LA+ + + + V + Y SK YP
Sbjct: 175 VHQRE-FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP 226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 4e-05
Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 40/184 (21%)
Query: 5 SKAESHQFSHVDHKIIHIIECGYIRSTDI-ALKLSIRCLTWKQSEYWDYNLYLQRSTDIA 63
++ QF V + + E Y+ DI AL + L +T +
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL--------------LQENDTTLVK 118
Query: 64 LKLSIRCLTWKQSHSLSGRPDTLTDVSDL-----DGSNFLQLV---QWSPVGHDLIFVKD 115
K I+ + + ++ RP S L +G+ L + Q G+ + ++
Sbjct: 119 TKELIKN--YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ----GNTDDYFEE 172
Query: 116 -NNLYQAYDDFRSINALTRDGIKGVLFNGVADWVYEEEVFSSTKTL--WFS-----PDGS 167
+LYQ Y + L + L + + E+VF+ + W PD
Sbjct: 173 LRDLYQTYHVL--VGDLIKF-SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 168 ILAY 171
L
Sbjct: 230 YLLS 233
Score = 29.6 bits (66), Expect = 0.88
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 104 SPVGHDLIFVK-DNNLYQAYDDFRSINALTRDGIKG--VLFNGVADWV----YEEEVFSS 156
S D ++ + DN+ Y F SI + + + F G Y +F +
Sbjct: 1639 SKAAQD-VWNRADNHFKDTYG-F-SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 157 TKTLWFSPDGSILAYMKFNDARVHNMSYIHYGEPG--SKT 194
DG + F + H+ SY E G S T
Sbjct: 1696 I------VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded
beta-propeller, structural genomics, PSI-2; 1.85A
{Agrobacterium tumefaciens str}
Length = 297
Score = 37.4 bits (87), Expect = 0.001
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 25/93 (26%)
Query: 89 VSDLDGSNFLQLVQ---------WSPVGHDLIFVKDNNLYQAYDDFRSINALTRDGIKGV 139
+ ++ + Q WSP G L+ + LY+ G +
Sbjct: 26 IFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI 85
Query: 140 LFNGVADWVYEEEVFSSTKTLWFSPDGSILAYM 172
N SPDG++ A
Sbjct: 86 CNNDHG----------------ISPDGALYAIS 102
Score = 27.7 bits (62), Expect = 2.3
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 91 DLDGSNFLQLVQ---------WSPVGHDLIFVKD-NNLYQAYDDFRSINALTRDGIKGVL 140
D+D +L +SP G + F Q + + ++ +
Sbjct: 159 DIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIW----RVRVDGSS-VERIT 213
Query: 141 FNGVADWVYEEEVFSSTKTLWFSPDGSILAYMKFNDAR 178
+ DW SP G + ++ ++
Sbjct: 214 DSAYGDW-----------FPHPSPSGDKVVFVSYDADV 240
Score = 27.0 bits (60), Expect = 4.0
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 17/99 (17%)
Query: 91 DLDGSNFLQLVQ---------WSPVGHDLIFVKDNN--LYQAYDDFRSINALTRDGIKGV 139
+DGS+ ++ SP G ++FV + D + + DG
Sbjct: 203 RVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262
Query: 140 LFNGVADWVYEEEVFSSTKTLWFSPDGSILAYMKFNDAR 178
+ + +SPDG AY+++
Sbjct: 263 TLFDLFGGQGTMNSPN------WSPDGDEFAYVRYFPVE 295
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.22
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 21/155 (13%)
Query: 32 DIALKLSIRCLTWKQSEYWDYNLYLQRSTDIALKLSIRCLTWKQSHSLSGRPDTLTDVSD 91
+ KL L KQ + ++ I L+L ++ H + D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 92 LDGSNFLQLVQW--SPVGHDLIFV----KDNNLYQAYDDFRSINA-LTRDGI----KGVL 140
D L Q+ S +GH L + + + DFR + + D G +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 141 FNGVADW-VYEEEVFSSTKTLWFSPDGSILAYMKF 174
N + Y+ + + + + A + F
Sbjct: 521 LNTLQQLKFYKPYICDNDPK----YERLVNAILDF 551
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 30.2 bits (68), Expect = 0.43
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 81 GRPDTLTDVSDLDGSNFLQLVQWSPVGHDLIFVK-DNNLYQAYDDFRSINALTRDGIKGV 139
P LT VS + G P ++ + + D R + A+ DG
Sbjct: 115 AVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174
Query: 140 LFNGVADWVYEEEVFSSTKTLWFSPDGSILAYM 172
+ V + + F + SPDG ++
Sbjct: 175 DRSAVRELSDDAHRFVTGPR--LSPDGRQAVWL 205
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein
complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Length = 415
Score = 29.4 bits (66), Expect = 0.83
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 34/116 (29%)
Query: 76 SHSLSGRPDTLTDVSDLDGSNFLQLVQ---------WSPVGHDLIFVKDNN----LYQAY 122
+ S +G + V DL Q+ W P +L F D +Y+
Sbjct: 240 ALSKTGSLNLY--VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297
Query: 123 DDFRSINALTRDGIKGVLFNGVADWVYEEEVFSSTKTLWFSPDGSILAYMKFNDAR 178
+ + +T +G N AD S DG + + N +
Sbjct: 298 INGGAPQRITWEGS----QNQDADV---------------SSDGKFMVMVSSNGGQ 334
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 26.5 bits (59), Expect = 3.5
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 83 PDTLTDVSDLDGSNFLQLVQWSPVGHDLIFVK 114
P+ V L SNF + + H + V+
Sbjct: 3 PEEEDHVLVLRKSNFAEALA----AHKYLLVE 30
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A
{Yersinia enterocolitica subsp}
Length = 388
Score = 27.1 bits (59), Expect = 4.5
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 20/98 (20%)
Query: 80 SGRPDTLTDVSDLDGSNFLQLVQWSPVGHDLI-FVKDNNLYQAYDDFRSINALTRDG--I 136
+G + + G + P + F + IN DG +
Sbjct: 177 TGESTVILQENQWLGH-----PIYRPYDDSTVAFCHEGPHDLVDARMWLINE---DGTNM 228
Query: 137 KGVLFNGVADWVYEEEVFSSTKTLWFSPDGSILAYMKF 174
+ V + + E ++ PDGS L Y+ +
Sbjct: 229 RKVKTHAEGESCTHE---------FWVPDGSALVYVSY 257
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 26.8 bits (60), Expect = 4.9
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 155 SSTKTLWFSPDGSILA 170
S L F G +
Sbjct: 248 SKKNNLEFGTYGKYVI 263
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein,
N-glycosylation, structural genomics; HET: FLC; 1.60A
{Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A*
3fj7_A*
Length = 237
Score = 26.2 bits (58), Expect = 6.4
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 79 LSGRPDTLTDVSDLDGSNFLQLVQWSPVGHDLIFV--KDNNLYQAYDDFRSINALTRDGI 136
+ L SD + ++ + I + K N L + + L +
Sbjct: 53 GASDQSALAIASDFGKDFNVSKIK-PLYFREAIILTQKGNPL-----KIKGLKDLANKKV 106
Query: 137 KGVLFNGVADWV 148
+ V+ G
Sbjct: 107 RIVVPEGAGKSN 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.432
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,152,939
Number of extensions: 174439
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 35
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)