BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7769
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 50/69 (72%)
Query: 119 SPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPG 178
SP L+ F+F GDIS FP + G GV YY MD ASLLPVLAL ++P D VLD+CAAPG
Sbjct: 102 SPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPG 161
Query: 179 GKTLVALQT 187
GKTL LQT
Sbjct: 162 GKTLALLQT 170
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSL 321
+ L K GG VVYSTCSLS +QN+ VV +++ + + +++++DL+ R
Sbjct: 268 LAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDT 327
Query: 322 FSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354
F F + + G LV P+L +NFGPMYFCK ++
Sbjct: 328 FCFFS-SCQVGELVIPNLMANFGPMYFCKMRRL 359
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 49/69 (71%)
Query: 119 SPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPG 178
SP L+ F+F GDIS FP + G GV YY D ASLLPVLAL ++P D VLD+CAAPG
Sbjct: 101 SPNLRCFTFDRGDISRFPPARPGSLGVXEYYLXDAASLLPVLALGLQPGDIVLDLCAAPG 160
Query: 179 GKTLVALQT 187
GKTL LQT
Sbjct: 161 GKTLALLQT 169
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSL 321
+ L K GG VVYSTCSLS +QN+ VV +++ + + +++++DL+ R
Sbjct: 267 LAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFXDT 326
Query: 322 FSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354
F F + + G LV P+L +NFGP YFCK ++
Sbjct: 327 FCFFS-SCQVGELVIPNLXANFGPXYFCKXRRL 358
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 39/180 (21%)
Query: 142 VTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPD--YYCMDGAS 199
+TG+ Y + +S P +AL+ +P + V D AAPGGKT Q D Y D
Sbjct: 96 LTGLI--YIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFD--- 150
Query: 200 LLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL---------------SPIQNDGV 244
R +T L++ L ++ V +++ + SL +P G
Sbjct: 151 -----VDENRLRETRLNLSRLGVLNV---ILFHSSSLHIGELNVEFDKILLDAPCTGSGT 202
Query: 245 VHMSLKRIWEETGCEIE---------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295
+H + +R W T +I+ ++ L+++K GG +VYSTCSL P +N+ V+ +L
Sbjct: 203 IHKNPERKWNRTXDDIKFCQGLQXRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWAL 262
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCM----DGASLLPV 203
YY + ++ + L+ +P + VLD+ AAPGGKT + + DG + +
Sbjct: 83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGL 142
Query: 204 LALNIRPYDTVLDIHAL---KLVKVGGSVVYSTCSLSPIQNDGVVH--MSLKRIWEETGC 258
L N+ + L + L + G+ + +P +G+ R W +
Sbjct: 143 LE-NVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAP 201
Query: 259 E--IEIKHAL-----KLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296
+ E++ AL +L+ GG +VYSTC+ +P +N+GVV LK
Sbjct: 202 KRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLK 246
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCM----DGASLLPV 203
YY + ++ + L+ +P + VLD+ AAPGGKT + + DG + +
Sbjct: 83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGL 142
Query: 204 LALNIRPYDTVLDIHAL---KLVKVGGSVVYSTCSLSPIQNDGVVH--MSLKRIWEETGC 258
L N+ + L + L + G+ + +P +G+ R W +
Sbjct: 143 LE-NVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAP 201
Query: 259 E--IEIKHAL-----KLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296
+ E++ AL +L+ GG +VYSTC+ +P +N+GVV LK
Sbjct: 202 KRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLK 246
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 145 VFNYYCMDG-ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASL--- 200
+F YY +S++P + LN R D +LDMCAAPGGKT L L + + +
Sbjct: 61 LFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKT-THLAQLMKNKGTIVAVEISKT 119
Query: 201 -LPVLALNIRP---YDTVL---DIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIW 253
L NI +T++ D+ K + + + L + ++ + +
Sbjct: 120 RTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVS 179
Query: 254 EE--TGCEIEIKH----ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
EE C + K + L+K G +VYSTCS+ +N+ V+ L++
Sbjct: 180 EEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYC---MDGASLLPV 203
YY + ++ + L+ +P + VLD+ AAPGGKT +A + +DG + +
Sbjct: 83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEVDGKRVRGL 142
Query: 204 LALNIRPYDTVLDIHAL---KLVKVGGSVVYSTCSLSPIQNDGVVH--MSLKRIWEETGC 258
L N+ + L + L + G+ + +P +G R W +
Sbjct: 143 LE-NVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGXFRKDREAARHWGPSAP 201
Query: 259 E--IEIKHAL-----KLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296
+ E++ AL +L+ GG +VYSTC+ +P +N+GVV LK
Sbjct: 202 KRXAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLK 246
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKT--LVALQTLYPDYYCMDGASLLPVLALN 207
+ AS + + L+ +P +TV+D+ AAPGGKT L L Y D V +
Sbjct: 243 VQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFD------VDKMR 296
Query: 208 IRPYDTVLDIHALKLVK------------VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEE 255
++ + +K+VK +G V +P + G + + + W
Sbjct: 297 MKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRL 356
Query: 256 TGCEIE---------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295
+I ++ A +LVK GG ++Y+TCS+ +N+ + L
Sbjct: 357 REDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFL 405
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 149 YCMDGASLLPVLALNIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLP----V 203
Y + ++ + A +P + VLD+CAAPGGK T +A Q + + P +
Sbjct: 88 YSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTN--EIFPKRAKI 145
Query: 204 LALNIRPY---DTVLDIHA-LKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI--WEETG 257
L+ NI + + ++ HA +LV +P +G I W E
Sbjct: 146 LSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGXFRKDPNAIKEWTEES 205
Query: 258 ---CEIE----IKHALKLVKVGGSVVYSTCSLSPIQNDGVV 291
C+ + A+K +K G ++YSTC+ +P +N+ ++
Sbjct: 206 PLYCQKRQQEILSSAIKXLKNKGQLIYSTCTFAPEENEEII 246
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 37/206 (17%)
Query: 127 FPSGDISEFPSPKRGVTGVFNYYC--MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVA 184
+P E P+P + G + + D ++ + L + + +LD+CAAPGGKT
Sbjct: 205 YPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKT--- 261
Query: 185 LQTLYPDYYCMDGASLLPVLALNI------RPYDTVLDIHALKLVKVG-GSVVYSTCSL- 236
+ ++ A V+A++I R YD + + VK G G C
Sbjct: 262 -------THILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQ 314
Query: 237 --------SPIQNDGVVHMS-----LKR---IWEETGCEIEIKHAL-KLVKVGGSVVYST 279
+P GV+ L+R I E + EI A+ +K GG++VY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374
Query: 280 CSLSPIQNDGVVHMSLKRIWEETGCE 305
CS+ P +N + L+R + CE
Sbjct: 375 CSVLPEENSLQIKAFLQRTADAELCE 400
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDG---ASLLP 202
+Y + +S LPV AL + V D+ AAPG KT + + AS +
Sbjct: 97 FYIQEASSXLPVAALFADGNAPQRVXDVAAAPGSKTTQISARXNNEGAILANEFSASRVK 156
Query: 203 VLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL--------SPIQNDGVVHM---SLKR 251
VL NI + I + L G V + +P +GVV +LK
Sbjct: 157 VLHANI----SRCGISNVALTHFDGRVFGAAVPEXFDAILLDAPCSGEGVVRKDPDALKN 212
Query: 252 IWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGV 290
E+ EI I A ++ GG++VYSTC+L+ +N+ V
Sbjct: 213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAV 257
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 25/168 (14%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKT--LVALQTLYPDYYCMD-----GASLLPVL 204
D AS LP + L+ P V+D CAAPG KT L AL + D AS+ +L
Sbjct: 88 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 147
Query: 205 A--------------LNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 250
A L + P D H + + + S S ++ G S
Sbjct: 148 ARAGVSCCELAEEDFLAVSPSDP--RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPV 205
Query: 251 RIWEETGCEIE-IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
R+ G + + HAL + +VYSTCSL +N+ VV +L++
Sbjct: 206 RLHALAGFQQRALCHALTFPSL-QRLVYSTCSLCQEENEDVVRDALQQ 252
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 145 VFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMD 196
VF ++ DG +++ P+D V+D G K +VAL + DY MD
Sbjct: 86 VFQWFEADGTQ-----TIDVSPFDKVVDSATKTGIKLIVALTNNWADYGGMD 132
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 22 RQKKQSD--EEEDDGSNRSSSDRHLYSNQSLEASIETAELDK--DRLVA 66
R+ K +D E +D S +D HLY N + + AE+ + DRL+A
Sbjct: 229 REPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFSLAEVPRAADRLLA 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,050,858
Number of Sequences: 62578
Number of extensions: 465086
Number of successful extensions: 1153
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 54
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)