BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7769
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0V8R7|NSUN4_BOVIN 5-methylcytosine rRNA methyltransferase NSUN4 OS=Bos taurus
GN=NSUN4 PE=2 SV=2
Length = 384
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 180/383 (46%), Gaps = 35/383 (9%)
Query: 3 MTQSIEDIEKKD---STEERSRRQKKQSDEEEDDGSNRSSSDRH--LYSNQ--SLEASIE 55
+ + + D+ K+ + R R +KK + E + R + YS Q L SI
Sbjct: 5 VVRGVRDMLKRADFATVPRRQRHKKKWASTEPKFPATRLALQNFDMTYSVQFGDLWPSIR 64
Query: 56 TAELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPE-T 114
+ L + + A + + G QLK + F+ +A + + P PE P
Sbjct: 65 VSLLSEQKYGALVNNFAAGDRVSAELEQLKARD-FVNEAVF--HREPEPENSQTAAPSPA 121
Query: 115 ELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMC 174
SP L+ F+F GD+S FP + G G+ +YY MD ASLLPVLAL ++P DTVLD+C
Sbjct: 122 SWACSPNLRCFTFTRGDVSRFPPARLGSLGLMDYYLMDAASLLPVLALGLQPGDTVLDLC 181
Query: 175 AAPGGKTLVALQT-----LYPDYYCMDGASLLPVLALNIRPYDT-------VLDIHALKL 222
AAPGGKTL LQT L + S L + + P D V K
Sbjct: 182 AAPGGKTLALLQTGCCRNLAANDLSTSRTSRLQRVLHSYVPQDVRDKNRVRVTSWDGRKW 241
Query: 223 VKVGGSVVYSTCSLSPIQNDG-VVHMSLKRIWEETG---------CEIEIKHA-LKLVKV 271
++ G P D +H I++ + ++++ A L K
Sbjct: 242 GELEGDTYDRVLVDVPCTTDRHSLHEEENSIFQRSRKKERQMLPVLQVQLLAAGLLATKP 301
Query: 272 GGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSY 331
GG +VYSTCSLS +QN+ VV +++ + + +++++DL+ + + FSF +
Sbjct: 302 GGHIVYSTCSLSHLQNEYVVQGAIELLDNQYSIKVQVEDLTHFRKLFMNTFSFFP-SCQV 360
Query: 332 GHLVQPHLPSNFGPMYFCKFDKI 354
G LV P+L +NFGPMYFCK ++
Sbjct: 361 GELVIPNLMANFGPMYFCKMCRM 383
>sp|Q5M7E3|NSUN4_XENLA 5-methylcytosine rRNA methyltransferase NSUN4 OS=Xenopus laevis
GN=nsun4 PE=2 SV=1
Length = 406
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 132/255 (51%), Gaps = 24/255 (9%)
Query: 124 AFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLV 183
F+F GDIS FP + G+ YY MD ASLLPVLAL+I+ +VLD+CAAPGGKTL
Sbjct: 153 CFTFSRGDISRFPQSRSDCFGLLEYYLMDAASLLPVLALDIQHGHSVLDLCAAPGGKTLA 212
Query: 184 ALQTLYPDYYCMDGAS------LLPVL------------ALNIRPYDTVL--DIHALKLV 223
LQT Y + S L VL + I +D L D+ A
Sbjct: 213 LLQTENCQYLAANDLSTSRSSRLHRVLHSYVPRDQRAEHKVRITSWDGRLWGDLEASTYD 272
Query: 224 KVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIK---HALKLVKVGGSVVYSTC 280
+V V +T S ++ + + ++ + ++ + L+ V+ GG VVYSTC
Sbjct: 273 RVLVDVPCTTDRHSLLEEENNIFHRIRTKQRQMLPLLQTELLVSGLRAVRPGGEVVYSTC 332
Query: 281 SLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLP 340
SLS +QN+ VV +++ + G ++ +DLS K+ F+F + G LV PHL
Sbjct: 333 SLSQLQNECVVQRAIELAATDHGVLVKPQDLSCFREVFKNTFNFFQ-DCRVGELVVPHLT 391
Query: 341 SNFGPMYFCKFDKIK 355
+NFGPM+FCK +IK
Sbjct: 392 ANFGPMFFCKLLRIK 406
>sp|Q96CB9|NSUN4_HUMAN 5-methylcytosine rRNA methyltransferase NSUN4 OS=Homo sapiens
GN=NSUN4 PE=1 SV=2
Length = 384
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 50/69 (72%)
Query: 119 SPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPG 178
SP L+ F+F GDIS FP + G GV YY MD ASLLPVLAL ++P D VLD+CAAPG
Sbjct: 126 SPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPG 185
Query: 179 GKTLVALQT 187
GKTL LQT
Sbjct: 186 GKTLALLQT 194
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 265 ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSF 324
L K GG VVYSTCSLS +QN+ VV +++ + + +++++DL+ R F F
Sbjct: 295 GLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCF 354
Query: 325 ANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354
+ + G LV P+L +NFGPMYFCK ++
Sbjct: 355 FS-SCQVGELVIPNLMANFGPMYFCKMRRL 383
>sp|Q9CZ57|NSUN4_MOUSE 5-methylcytosine rRNA methyltransferase NSUN4 OS=Mus musculus
GN=Nsun4 PE=2 SV=1
Length = 381
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Query: 90 FITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYY 149
F+++A + + + PE P L SP L+ F+F GD+S FP + G G+ +YY
Sbjct: 98 FVSEA--ISHQKLEPESGLS--PTPSLDCSPNLRCFTFSRGDVSRFPPARLGSLGLMDYY 153
Query: 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQT 187
MD ASLLPVLAL ++ DTVLD+CAAPGGKTL LQT
Sbjct: 154 LMDAASLLPVLALGLQHGDTVLDLCAAPGGKTLALLQT 191
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSL 321
+ L K GG VVYSTCSLS +QN+ VV +++ + + +++++DLS +
Sbjct: 289 LAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYNIKVQVEDLSHFRKLFMDT 348
Query: 322 FSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354
F F + G LV P+L NFGPMYFCK ++
Sbjct: 349 FCFFP-SCQVGELVIPNLMVNFGPMYFCKLHRL 380
>sp|Q0P5D8|NSUN3_BOVIN Putative methyltransferase NSUN3 OS=Bos taurus GN=NSUN3 PE=2 SV=1
Length = 338
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 27/241 (11%)
Query: 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDY- 192
PS + + YY ++ ASLLPVLAL +R + VLD+CAAPGGK+L LQ YP Y
Sbjct: 100 RMPSERHQTGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSLALLQCAYPGYL 159
Query: 193 YCMDGASL-LPVLALNI-----RPYDTVLDIHALKLVKVGGS--------VVYSTCS--- 235
+C + SL L L + +P V+ + L ++G + +V + CS
Sbjct: 160 HCNEYDSLRLRWLRQTLESFIPQPLVNVIKVSELDGREMGDAQPETFDKVLVDAPCSNDR 219
Query: 236 ---LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292
S +S +R E+ ++ A+K ++ GG +VYSTC+LS +N V+
Sbjct: 220 SWLFSSDSQKAACRISQRRNLPLLQMEL-LRSAIKALRPGGLLVYSTCTLSKAENQDVIS 278
Query: 293 MSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352
L + I D+ + R F+FA G LV P +GPMY K
Sbjct: 279 EVL-----NSYSNIMPVDIKEMARTCSRDFTFAPTGQECGLLVIPDKGKAWGPMYVAKLK 333
Query: 353 K 353
K
Sbjct: 334 K 334
>sp|Q4KMK0|NSUN3_DANRE Putative methyltransferase NSUN3 OS=Danio rerio GN=nsun3 PE=2 SV=1
Length = 367
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 121/258 (46%), Gaps = 36/258 (13%)
Query: 122 LQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT 181
LQ F P D P+ + YY ++ ASLLPVLALN++ + VLD+CAAPGGK+
Sbjct: 120 LQCFIHP--DPVRIPTQSHHTGWLKQYYLLNAASLLPVLALNVQEGENVLDLCAAPGGKS 177
Query: 182 LVALQTLYPD-YYCMDGAS-----LLPVLALNIRP------YDTVLDIHALKLVKVGG-- 227
L LQT P +C + LL L + P T+ D ++ ++ G
Sbjct: 178 LAILQTATPGLLHCNEVDQHRHDWLLKTLESYVPPSLRHLLSVTLQDGRSIGTMQPGAYD 237
Query: 228 -SVVYSTCS------LSPIQNDGVVHM----SLKRIWEETGCEIEIKHALKLVKVGGSVV 276
+V + CS +P + G + + L + +E C AL V+ GG VV
Sbjct: 238 KVLVDAPCSNDRSWLYTPDTHRGEMWLKERTQLPLLQKELLCS-----ALAAVRPGGIVV 292
Query: 277 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQ 336
YSTC++S +N VV L G E++ + Q + L F FA+++ S G LV
Sbjct: 293 YSTCTMSRAENQSVVEEVLASY---PGVELQEME-QQFIDSLSDHFCFAHLHPSVGQLVI 348
Query: 337 PHLPSNFGPMYFCKFDKI 354
P +GPMY + KI
Sbjct: 349 PQKGKTWGPMYVSQLKKI 366
>sp|Q8CCT7|NSUN3_MOUSE Putative methyltransferase NSUN3 OS=Mus musculus GN=Nsun3 PE=2 SV=1
Length = 348
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 110/240 (45%), Gaps = 25/240 (10%)
Query: 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYY 193
PS + + YY ++ ASLLPVLAL +R + VLD+CAAPGGK++ LQ YP Y
Sbjct: 99 RMPSERHQTGSLKKYYLLNAASLLPVLALELRDGEAVLDLCAAPGGKSVALLQCAYPGYL 158
Query: 194 CMD------GASLLPVLALNI-RPYDTVLDIHALKLVKVGGSVVYSTCSL---SPIQNDG 243
+ G L L I +P V+ + L ++G + + + +P ND
Sbjct: 159 LCNEYDRPRGRWLRQTLESFIPQPLINVIKVSELDGREMGDAQPATFDKVLVDAPCSNDR 218
Query: 244 VVHMS------LKRIWEETG---CEIE-IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293
S RI + ++E ++ A+K ++ GG +VYSTC+LS +N V+
Sbjct: 219 SWLFSSDSQKAAYRIHQRKNLPVLQVELVRSAIKALRPGGLLVYSTCTLSKAENQDVISE 278
Query: 294 SLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDK 353
L + I D+S R F+FA + LV P +GPMY K K
Sbjct: 279 VL-----TSDSNIVPVDISGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGPMYIAKLKK 333
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPD--------------YYCMDGASLLPVLAL 206
AL++R Y TVL K++ + PD YY ++ ASLLPVLAL
Sbjct: 68 ALHLRGYHTVLQGALPHYPKSMKCYLSRTPDRMPSERHQTGSLKKYYLLNAASLLPVLAL 127
Query: 207 NIRPYDTVLDIHALKLVKVGGSVVYSTCS 235
+R + VLD+ A G SV C+
Sbjct: 128 ELRDGEAVLDLCA---APGGKSVALLQCA 153
>sp|Q9H649|NSUN3_HUMAN Putative methyltransferase NSUN3 OS=Homo sapiens GN=NSUN3 PE=2 SV=1
Length = 340
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 27/241 (11%)
Query: 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDY- 192
PS + + + YY ++ ASLLPVLAL +R + VLD+CAAPGGK++ LQ P Y
Sbjct: 99 RIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYL 158
Query: 193 YCMDGASL-LPVLALNI-----RPYDTVLDIHALKLVKVGGS--------VVYSTCS--- 235
+C + SL L L + +P V+ + L K+G + +V + CS
Sbjct: 159 HCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDR 218
Query: 236 ---LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292
S +S +R E+ ++ A+K ++ GG +VYSTC+LS +N V+
Sbjct: 219 SWLFSSDSQKASCRISQRRNLPLLQIEL-LRSAIKALRPGGILVYSTCTLSKAENQDVIS 277
Query: 293 MSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352
L + I D+ R F+FA G LV P +GPMY K
Sbjct: 278 EIL-----NSHGNIMPMDIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGPMYVAKLK 332
Query: 353 K 353
K
Sbjct: 333 K 333
>sp|Q66KI9|NSUN4_XENTR 5-methylcytosine rRNA methyltransferase NSUN4 OS=Xenopus tropicalis
GN=nsun4 PE=2 SV=1
Length = 406
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 45/66 (68%)
Query: 122 LQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT 181
L F F GDIS FP + G+ YY MD ASLLPVLAL+++ +VLD+CAAPGGKT
Sbjct: 151 LTCFKFSRGDISRFPQSRSDSFGLLEYYLMDAASLLPVLALDVQHGHSVLDLCAAPGGKT 210
Query: 182 LVALQT 187
L LQT
Sbjct: 211 LALLQT 216
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 265 ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSF 324
L+ V+ GG VVYSTCSLS +QN+ VV +++ + G ++ +DLS K+ F+F
Sbjct: 317 GLRAVRPGGEVVYSTCSLSQLQNECVVERAVELAASDHGVHVKPQDLSCFREVFKNTFNF 376
Query: 325 ANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
G LV PHL +NFGPM+FCK +I+
Sbjct: 377 FQ-GCRVGELVLPHLTANFGPMFFCKLLRIE 406
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 191 DYYCMDGASLLPVLALNIRPYDTVLDIHA 219
+YY MD ASLLPVLAL+++ +VLD+ A
Sbjct: 176 EYYLMDAASLLPVLALDVQHGHSVLDLCA 204
>sp|O13935|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4b PE=3 SV=2
Length = 685
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 96/224 (42%), Gaps = 56/224 (25%)
Query: 147 NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGA----SLLP 202
N + S+LP L L++ P+ +LDMCAAPG KT ++ +Y D A +L
Sbjct: 140 NINRQEAVSMLPPLFLDVEPHHVILDMCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLKS 199
Query: 203 VLALNIR----PYDTVLDIHALKLVK------------------VGGS-------VVYST 233
V L I P + +H + + V GS V+
Sbjct: 200 VEGLVIANDADPKRAQMLVHQINRLNSPNILVVNHDASTMPNIYVKGSSPSDGLNVIEEK 259
Query: 234 CSLS--------PIQNDGVV--HMSLKRIWEETGC--------EIEIKHALKLVKVGGSV 275
L P DG ++SL R W I I+ L+L+KVGG +
Sbjct: 260 KILKFDRILADVPCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIR-GLQLLKVGGCL 318
Query: 276 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLK 319
VYSTCS++PI+N+ VV +LK TG + + D+S+ L LK
Sbjct: 319 VYSTCSINPIENEAVVTAALK----ATGGAVSLVDVSKKLPLLK 358
>sp|P38205|NCL1_YEAST Multisite-specific tRNA:(cytosine-C(5))-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NCL1 PE=1 SV=1
Length = 684
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 43/192 (22%)
Query: 143 TGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLP 202
V N + S++P + L ++P+ TVLDMCAAPG KT ++ L+ D G
Sbjct: 142 NAVGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGF---- 197
Query: 203 VLALNIRPYDTVLDIHALKLVKVGGSVVYS---------------------------TCS 235
V+A + + + +H LK + +V + C
Sbjct: 198 VVANDADARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCD 257
Query: 236 LSPIQNDGVVHMSLKRIWEETGCEIE----------IKHALKLVKVGGSVVYSTCSLSPI 285
+ P DG + ++ +W++ + + L L+K G +VYSTCSL+PI
Sbjct: 258 V-PCSGDGTMRKNVN-VWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPI 315
Query: 286 QNDGVVHMSLKR 297
+N+ VV +L++
Sbjct: 316 ENEAVVAEALRK 327
>sp|Q9W4M9|NSUN2_DROME tRNA (cytosine(34)-C(5))-methyltransferase OS=Drosophila
melanogaster GN=CG6133 PE=2 SV=1
Length = 746
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 37/201 (18%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY--PDYYCMDGASLLPVLALNIR 209
+ S++P + L++RP D VLDMCAAPG KT ++ L+ P+ + + +L N R
Sbjct: 162 EAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDVDNNR 221
Query: 210 PYDTVLDIHALK----LVKVGGSVVYSTCSLS------------------PIQNDGVVH- 246
Y V L LV S V+ + P DG +
Sbjct: 222 CYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTKPDGSKAILKFDKILCDVPCSGDGTLRK 281
Query: 247 -------MSLKRIWEETGCEIEI-KHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298
+L + + G + I + ++++VGG +VYSTCSL+PI+N+ V L+RI
Sbjct: 282 NPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAV----LQRI 337
Query: 299 WEETGCEIEIKDLSQALRPLK 319
++ +E+ D + LK
Sbjct: 338 IKDADGALELVDAGHLVPGLK 358
>sp|Q9HGQ2|TRM4A_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4a PE=1 SV=3
Length = 688
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 40/204 (19%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLP---VLALNI 208
+ S++P L LN+ + VLDMCAAPG KT L+ L+ D +LLP V+A +
Sbjct: 145 ESVSMVPPLLLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPSGIVIANDS 204
Query: 209 RPYDTVLDIHALKLVKVGGS-VVYSTCSLSPIQN----DGVVHMSLKRIWEETGC----- 258
+ +H +K + +V S P + DG + RI + C
Sbjct: 205 DNKRAHMLVHQIKRLNSPNVLIVNHDASFLPNFHLSSPDGKKFLKFDRILADVPCSGDGT 264
Query: 259 ---------EIEIKHA--------------LKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295
E +K A L+L++ GG +VYSTCSL+PI+N+ VV L
Sbjct: 265 FRKNIALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIENEAVVSAVL 324
Query: 296 KRIWEETGCEIEIKDLSQALRPLK 319
T + + D+S L LK
Sbjct: 325 ----NATRGSVRLVDVSSELPQLK 344
>sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus
GN=NSUN2 PE=2 SV=1
Length = 796
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 43/210 (20%)
Query: 147 NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLAL 206
N + S++P L LN+ P +LDMCAAPG KT ++ L+ D V+A
Sbjct: 157 NISRQEAVSMIPPLLLNVNPDHKILDMCAAPGSKTAQLIEMLHADMNVPFPKGF--VIAN 214
Query: 207 NIRPYDTVLDIHALKL--------------------VKVGG---SVVYST--CSLSPIQN 241
++ L +H K V V G ++ Y C + P
Sbjct: 215 DVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPNLQVDVDGRKETLFYDRILCDV-PCSG 273
Query: 242 DGVVHMSLKRIWEETGCEIEIK-HALKL---------VKVGGSVVYSTCSLSPIQNDGVV 291
DG + ++ +W++ + ++ H L+L + GG +VYSTCSL+PI+N+ V+
Sbjct: 274 DGTMRKNID-VWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCSLNPIENEAVI 332
Query: 292 HMSLKRIWEETGCEIEIKDLSQALRPLKSL 321
L E++ +E+ D+S L LK +
Sbjct: 333 ASLL----EKSQGALELADVSSELPGLKRM 358
>sp|Q08J23|NSUN2_HUMAN tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2
PE=1 SV=2
Length = 767
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 45/211 (21%)
Query: 147 NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPD--------------- 191
N + S++P L LN+RP+ +LDMCAAPG KT ++ L+ D
Sbjct: 157 NISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDV 216
Query: 192 -----YYCMDGASLLPVLALNIRPYDTV------LDIHALKLVKVGGSVVYSTCSLSPIQ 240
Y + A L + + +D +D+ K + ++ C + P
Sbjct: 217 DNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRIL---CDV-PCS 272
Query: 241 NDGVVHMSLKRIWEETGCEIEIK-HALKL---------VKVGGSVVYSTCSLSPIQNDGV 290
DG + ++ +W++ ++ H L+L + GG +VYSTCSL+PI+++ V
Sbjct: 273 GDGTMRKNID-VWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAV 331
Query: 291 VHMSLKRIWEETGCEIEIKDLSQALRPLKSL 321
+ L E++ +E+ D+S L LK +
Sbjct: 332 IASLL----EKSEGALELADVSNELPGLKWM 358
>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1
Length = 446
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 30/228 (13%)
Query: 99 YYRPSPEVDFKVVP--ETELHISPYLQAFSFPSGDISEFPSPKR--GVTGVFN------- 147
Y+ +P +D ++ P + + ++ L + + ++ P R G TG
Sbjct: 172 YFNQNPSLDLRINPLKTSRVEVAQSLAELNLTTTAMAGLPQGLRLGGKTGAITQLPGFAE 231
Query: 148 --YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT--LVALQTLYPDYYCMD--GASLL 201
+ D ++ LN +P +T+ D+CAAPGGKT + L Y D G L
Sbjct: 232 GWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGDRHGWRLQ 291
Query: 202 PVLALNIRPYDTVLDIHALKLVKVGGS----VVYSTCSLSPIQNDGVVHMSLKRIWEETG 257
+ R T + I L + G +V P G +H + W +T
Sbjct: 292 KLAVTQQRLGLTSIKIWEGDLTQPGVKPPVELVDRALLDVPCSGLGTLHRNPDLRWRQTP 351
Query: 258 CEIE---------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296
I +K LVK GG++VYSTC+L+P +N+ + L+
Sbjct: 352 ATIATLLPLQQALLKAIAPLVKSGGTLVYSTCTLNPAENEAQIERFLQ 399
>sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase OS=Mus musculus GN=Nsun2
PE=1 SV=2
Length = 757
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 45/211 (21%)
Query: 147 NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPD--------------- 191
N + S++P L LN+ P+ +LDMCAAPG KT ++ L+ D
Sbjct: 157 NISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDV 216
Query: 192 -----YYCMDGASLLPVLALNIRPYDT------VLDIHALKLVKVGGSVVYSTCSLSPIQ 240
Y + A L + + +D +D+ K + ++ C + P
Sbjct: 217 DNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRIL---CDV-PCS 272
Query: 241 NDGVVHMSLKRIWEETGCEIEIK-HALKL---------VKVGGSVVYSTCSLSPIQNDGV 290
DG + ++ +W++ ++ H L+L + GG +VYSTCSL+P++++ V
Sbjct: 273 GDGTMRKNID-VWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAV 331
Query: 291 VHMSLKRIWEETGCEIEIKDLSQALRPLKSL 321
+ L E++ +E+ D+S L LK +
Sbjct: 332 IAALL----EKSEGALELADVSAELPGLKWM 358
>sp|Q4V7N2|NSUN2_XENLA tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus laevis
GN=nsun2 PE=2 SV=1
Length = 698
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 41/204 (20%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPY 211
+ S++P + LN++P+ +LDMCAAPG KT ++ L+ D V+A ++
Sbjct: 160 EAVSMIPPVLLNVQPHHKILDMCAAPGSKTAQIIEMLHADMNVPFPEGF--VIANDVDNK 217
Query: 212 DTVLDIHALK--------------------LVKVGGS--VVYSTCSLS--PIQNDGVVHM 247
L +H K L++ GS V+Y L P DG +
Sbjct: 218 RCYLLVHQAKRLNSPCIMVVNHDASSIPRLLIENNGSREVLYYDRILCDVPCSGDGTMRK 277
Query: 248 SLKRIWEET---------GCEIEIK-HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ +W++ G +I I ++ + GG +VYSTCSL+P++++ V+ L
Sbjct: 278 NID-VWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIVSLL-- 334
Query: 298 IWEETGCEIEIKDLSQALRPLKSL 321
+++ +E+ D++ L LK +
Sbjct: 335 --DKSEGSLELADVASELPGLKWM 356
>sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus tropicalis
GN=nsun2 PE=2 SV=1
Length = 798
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 37/179 (20%)
Query: 147 NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLAL 206
N + S++P + L ++P+ +LDMCAAPG KT ++ L+ D V+A
Sbjct: 159 NISRQEAVSMIPPVLLKVQPHHKILDMCAAPGSKTAQIIEMLHADMNVPFPEGF--VIAN 216
Query: 207 NIRPYDTVLDIHALK--------------------LVKVGGS--VVYSTCSLS--PIQND 242
++ L +H K LV+ GS V+Y L P D
Sbjct: 217 DVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLVENNGSREVLYYDRILCDVPCSGD 276
Query: 243 GVVHMSLKRIWEET---------GCEIEIK-HALKLVKVGGSVVYSTCSLSPIQNDGVV 291
G + ++ +W++ G +I I ++ + GG +VYSTCSL+P++++ V+
Sbjct: 277 GTLRKNID-VWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVI 334
>sp|Q7MKY6|RSMF_VIBVY Ribosomal RNA small subunit methyltransferase F OS=Vibrio
vulnificus (strain YJ016) GN=rsmF PE=3 SV=2
Length = 472
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 116 LHISPYLQAFSFPSGDISEFP--SPKRGVTGVFNYYCMDGASLLPVLALNI--RPYDTVL 171
LH P+ + + D S+ P + + G+F Y + +S++PV AL + +++VL
Sbjct: 63 LHPVPWCETGFWIEADESKVPLGNTAEHMCGLF--YIQEASSMMPVSALFLGENQFESVL 120
Query: 172 DMCAAPGGKT--LVALQT----LYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKV 225
D AAPG KT + AL L + Y AS + VL NI + L
Sbjct: 121 DTAAAPGSKTTQIAALMNNQGILVANEYA---ASRVKVLHANIER----CGVRNAALSNF 173
Query: 226 GGSVV-------YSTCSL-SPIQNDGVVHM---SLKRIWEETGCEIE------IKHALKL 268
G V + L +P +G V ++K +E+ EI I+ A +
Sbjct: 174 DGRVFGGWLPESFDAVLLDAPCSGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQA 233
Query: 269 VKVGGSVVYSTCSLSPIQNDGVVH 292
+K GG +VYSTC+LS +N V H
Sbjct: 234 LKPGGVMVYSTCTLSEEENQQVCH 257
>sp|Q8D9F3|RSMF_VIBVU Ribosomal RNA small subunit methyltransferase F OS=Vibrio
vulnificus (strain CMCP6) GN=rsmF PE=3 SV=1
Length = 472
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 116 LHISPYLQAFSFPSGDISEFP--SPKRGVTGVFNYYCMDGASLLPVLALNI--RPYDTVL 171
LH P+ + + D S+ P + + G+F Y + +S++PV AL + +++VL
Sbjct: 63 LHPVPWCETGFWIEADESKVPLGNTAEHMCGLF--YIQEASSMMPVSALFLGENQFESVL 120
Query: 172 DMCAAPGGKT--LVALQT----LYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKV 225
D AAPG KT + AL L + Y AS + VL NI + L
Sbjct: 121 DTAAAPGSKTTQIAALMNNQGILVANEYA---ASRVKVLHANIER----CGVRNAALSNF 173
Query: 226 GGSVV-------YSTCSL-SPIQNDGVVHM---SLKRIWEETGCEIE------IKHALKL 268
G V + L +P +G V ++K +E+ EI I+ A +
Sbjct: 174 DGRVFGGWLPESFDAVLLDAPCSGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQA 233
Query: 269 VKVGGSVVYSTCSLSPIQNDGVVH 292
+K GG +VYSTC+LS +N V H
Sbjct: 234 LKPGGVMVYSTCTLSEEENQQVCH 257
>sp|A7N0K6|RSMF_VIBHB Ribosomal RNA small subunit methyltransferase F OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=rsmF PE=3 SV=2
Length = 478
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 74/170 (43%), Gaps = 32/170 (18%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKT--LVALQT----LYPDYYCMDGAS 199
+Y + +S++PV AL N YD VLD AAPG KT + AL L + Y AS
Sbjct: 95 FYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEY---AAS 151
Query: 200 LLPVLALNIRPYDTVLDIHALKLVKVGGSVV-------YSTCSL-SPIQNDGVVHM---S 248
+ VL NI + L G V + L +P +G V +
Sbjct: 152 RVKVLHANIER----CGVRNAALSNFDGRVFGGWLPEQFDAVLLDAPCSGEGTVRKDEDA 207
Query: 249 LKRIWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292
+K + + EI I+ A +K GG +VYSTC+LS +N V H
Sbjct: 208 MKNWTQSSVVEIADTQKDLIESAFHALKPGGVMVYSTCTLSTEENQQVCH 257
>sp|Q87PA5|RSMF_VIBPA Ribosomal RNA small subunit methyltransferase F OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rsmF PE=3 SV=1
Length = 478
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 114/277 (41%), Gaps = 64/277 (23%)
Query: 54 IETAELDKDRLVAPHDTASTGLHDFIPATQ-----------LK-GMEGFITDADYMDY-Y 100
I A L+K + + P A+ + DFI A Q LK +E F+ A+ +
Sbjct: 7 IPDAFLEKIQTILP---ANLNMEDFISACQRPLRKSIRVNTLKMSVEDFVKRAEDKGWTL 63
Query: 101 RPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVL 160
P P D E + + P G+ +E ++G+F Y + +S++PV
Sbjct: 64 SPVPWCDNGFWIEADESVVPL--------GNTAEH------MSGLF--YIQEASSMMPVS 107
Query: 161 AL--NIRPYDTVLDMCAAPGGKT--LVALQ----TLYPDYYCMDGASLLPVLALNIRPYD 212
AL N YD VLD AAPG KT + AL L + Y AS + VL NI
Sbjct: 108 ALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEGVLVANEYA---ASRVKVLHANIER-- 162
Query: 213 TVLDIHALKLVKVGGSVV-------YSTCSL-SPIQNDGVVHM---SLKRIWEETGCEIE 261
+ L G V + L +P +G V ++K + + EI
Sbjct: 163 --CGVRNAALSNFDGRVFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLEIA 220
Query: 262 ------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292
I+ A +K GG +VYSTC+LS +N V H
Sbjct: 221 DTQKDLIESAFHALKPGGVLVYSTCTLSTEENQQVCH 257
>sp|C3LMI5|RSMF_VIBCM Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=rsmF PE=3 SV=2
Length = 473
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 106/248 (42%), Gaps = 45/248 (18%)
Query: 73 TGLHDFIPATQL---KGMEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPS 129
T L DFI A Q K + ++ + + E ++++ P P+ + +
Sbjct: 23 TQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTP------VPWCENGFWID 76
Query: 130 GDISEFP--SPKRGVTGVFNYYCMDGASLLPVLALNI--RPYDTVLDMCAAPGGKT--LV 183
D S P + + G+F Y + +S++PV AL + YD+VLDM AAPG KT +
Sbjct: 77 ADESLVPLGNTAEHMAGLF--YIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMA 134
Query: 184 ALQ----TLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVY-------- 231
AL L + + AS + VL NI I L G V
Sbjct: 135 ALMDNQGVLVANEF---SASRVKVLHANIER----CGIRNTALSNFDGCVFGGWLPERFD 187
Query: 232 STCSLSPIQNDGVV--------HMSLKRIWEETGCEIE-IKHALKLVKVGGSVVYSTCSL 282
+ +P +G + + SL+ I + I+ A + +KVGG++VYSTC+L
Sbjct: 188 AVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTL 247
Query: 283 SPIQNDGV 290
S +N V
Sbjct: 248 SREENQQV 255
>sp|Q9KRY1|RSMF_VIBCH Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmF PE=3 SV=2
Length = 473
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 106/248 (42%), Gaps = 45/248 (18%)
Query: 73 TGLHDFIPATQL---KGMEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPS 129
T L DFI A Q K + ++ + + E ++++ P P+ + +
Sbjct: 23 TQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTP------VPWCENGFWID 76
Query: 130 GDISEFP--SPKRGVTGVFNYYCMDGASLLPVLALNI--RPYDTVLDMCAAPGGKT--LV 183
D S P + + G+F Y + +S++PV AL + YD+VLDM AAPG KT +
Sbjct: 77 ADESLVPLGNTAEHMAGLF--YIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMA 134
Query: 184 ALQ----TLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVY-------- 231
AL L + + AS + VL NI I L G V
Sbjct: 135 ALMDNQGVLVANEF---SASRVKVLHANIER----CGIRNTALSNFDGCVFGGWLPERFD 187
Query: 232 STCSLSPIQNDGVV--------HMSLKRIWEETGCEIE-IKHALKLVKVGGSVVYSTCSL 282
+ +P +G + + SL+ I + I+ A + +KVGG++VYSTC+L
Sbjct: 188 AVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTL 247
Query: 283 SPIQNDGV 290
S +N V
Sbjct: 248 SREENQQV 255
>sp|Q83RJ3|RSMF_SHIFL Putative ribosomal RNA small subunit methyltransferase F
OS=Shigella flexneri GN=rsmF PE=5 SV=2
Length = 479
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 37/205 (18%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDG---ASLLP 202
+Y + +S+LPV AL + V+D+ AAPG KT + + + AS +
Sbjct: 97 FYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVK 156
Query: 203 VLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL--------SPIQNDGVVHM---SLKR 251
VL NI + I + L GG V + +P +GVV +LK
Sbjct: 157 VLHANI----SRCGISNVALTHFGGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN 212
Query: 252 IWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE 305
E+ EI I A ++ GG++VYSTC+L+ +N+ V LK + + E
Sbjct: 213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCRW-LKETYPD---E 268
Query: 306 IEIKDLSQALRPLKSLFSFANINLS 330
+E PL LF AN L+
Sbjct: 269 VE-------FLPLGDLFPGANKALT 286
>sp|Q0T529|RSMF_SHIF8 Ribosomal RNA small subunit methyltransferase F OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmF PE=3 SV=2
Length = 479
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 37/205 (18%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDG---ASLLP 202
+Y + +S+LPV AL + V+D+ AAPG KT + + + AS +
Sbjct: 97 FYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVK 156
Query: 203 VLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL--------SPIQNDGVVHM---SLKR 251
VL NI + I + L GG V + +P +GVV +LK
Sbjct: 157 VLHANI----SRCGISNVALTHFGGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN 212
Query: 252 IWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE 305
E+ EI I A ++ GG++VYSTC+L+ +N+ V LK + + E
Sbjct: 213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCRW-LKETYPD---E 268
Query: 306 IEIKDLSQALRPLKSLFSFANINLS 330
+E PL LF AN L+
Sbjct: 269 VE-------FLPLGDLFPGANKALT 286
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 32/176 (18%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT--LVALQTLYPDYYCMD-GASLLPVL 204
Y +S LPV+AL +P + +LDM +APGGK + ALQ + D + L
Sbjct: 321 YILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDSNKARTKAL 380
Query: 205 ALNIR-----------------PYDTV--LDIHALKLVKVGGSVVYSTCSLSPIQN---- 241
+ NI P + + D L G V+Y S+ ++
Sbjct: 381 SANIHRLGVRNAIVCNYDGRKFPNEVIGGFDRVLLDAPCSGTGVIYKDQSVKTNKSERDF 440
Query: 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
D + H+ + + I K GG +VYSTCS++ +++ V+ +LK+
Sbjct: 441 DTLSHLQRQLLLS------AIDSVNADSKTGGFIVYSTCSITVDEDEAVIQYALKK 490
>sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae (strain 342) GN=rsmF PE=3 SV=1
Length = 477
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 148 YYCMDGASLLPVLAL---NIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMD--GASLL 201
+Y + +S+LPV AL N +P + V+D+ AAPG KT +A + + AS +
Sbjct: 97 FYIQEASSMLPVAALFADNPQP-ERVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRV 155
Query: 202 PVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS--------PIQNDGVVHM---SLK 250
VL NI + I + L G V + + P +GVV +LK
Sbjct: 156 KVLHANI----SRCGISNVALTHFDGRVFGAALPEAFDAILLDAPCSGEGVVRKDADALK 211
Query: 251 RIWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
E+ +I I A ++ GG++VYSTC+L+ +N VV L R
Sbjct: 212 NWSPESNLDIAATQRELIDSAFHALRPGGTLVYSTCTLNREENQSVVQWLLSR 264
>sp|Q6LQU5|RSMF_PHOPR Ribosomal RNA small subunit methyltransferase F OS=Photobacterium
profundum GN=rsmF PE=3 SV=2
Length = 476
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTL---VALQTLYPDYYCMDGASLLP 202
+Y + +S++PV AL N D VLDM +APG KT A+Q AS +
Sbjct: 96 FYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGVLVANELAASRIK 155
Query: 203 VLALNIRP---YDTVLDIHALKLVKVGGS-------VVYSTCS-LSPIQNDG--VVHMSL 249
VL N++ Y+ L H V G + ++ + CS I+ DG + + SL
Sbjct: 156 VLHANLQRCGVYNAAL-THFDGCVFGGWAPESFDTILLDAPCSGEGAIRKDGDAMANWSL 214
Query: 250 KRIWEETGCEIE-IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308
I + + I A + +K GG +VYSTC+L+ +N V H LK E G +E
Sbjct: 215 SSIEDIAAIQRNLIISAFQALKTGGMMVYSTCTLNLSENQHVCHF-LK---ETFGDAVEF 270
Query: 309 KDLSQALRPLKSLFSFANINLS 330
+ PL LF A +L+
Sbjct: 271 E-------PLGDLFEGAEKSLT 285
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 26/172 (15%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMD--GASLLP 202
+Y + +S+LPV AL + R + V+D+ AAPG KT +A + + AS +
Sbjct: 97 FYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVK 156
Query: 203 VLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL--------SPIQNDGVVHM---SLKR 251
VL NI + I + L G V + +P +GVV +LK
Sbjct: 157 VLHANI----SRCGISNVALTHFDGRVFGAALPETFDAILLDAPCSGEGVVRKDADALKN 212
Query: 252 IWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
E+ +I I A ++ GG++VYSTC+L+ +N V+ L R
Sbjct: 213 WSPESNLDIAATQRELIDSAFHALRPGGTLVYSTCTLNREENQSVIEWLLSR 264
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 145 VFNYYCMDG-ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASL--- 200
+F YY +S++P + LN R D +LDMCAAPGGKT L L + + +
Sbjct: 61 LFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKT-THLAQLMKNKGTIVAVEISKT 119
Query: 201 -LPVLALNIRP---YDTVL---DIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIW 253
L NI +T++ D+ K + + + L + ++ + +
Sbjct: 120 RTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVS 179
Query: 254 EE--TGCEIEIKH----ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
EE C + K + L+K G +VYSTCS+ +N+ V+ L++
Sbjct: 180 EEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229
>sp|B1KQN1|RSMF_SHEWM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rsmF PE=3 SV=1
Length = 478
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 32/174 (18%)
Query: 142 VTGVFNYYCMDGASLLPVLAL-----NIRPYDTVLDMCAAPGGKT--LVALQ----TLYP 190
+ G+F Y + +S+LP AL N Y T+LDM +APG KT + +L L
Sbjct: 87 IQGLF--YIQEASSMLPPTALFDGLDNSSEY-TILDMASAPGSKTTQMASLMDNKGLLVA 143
Query: 191 DYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL----SPIQNDGVVH 246
+ Y +L + Y+T L +V G +Y +P +G +
Sbjct: 144 NEYSSSRVKVLHANVQRMGVYNTALTHFD---ARVFGEYLYHQFDAILLDAPCSGEGTIR 200
Query: 247 ---MSLKRIW--EETGCEIE-----IKHALKLVKVGGSVVYSTCSLSPIQNDGV 290
++L R W EE IE I+ A +K GGS+VYSTC+LS +N V
Sbjct: 201 KDPLAL-RNWSLEENASIIETQKALIESAFLALKTGGSLVYSTCALSRSENQEV 253
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
GN=Nop2 PE=2 SV=1
Length = 793
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 148 YYCMDGAS-LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLAL 206
+Y + GAS +LPV+AL + ++ +LDMC APGGKT Q + + +L A
Sbjct: 350 HYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLM------KNTGVILANDAN 403
Query: 207 NIRPYDTVLDIHALKLVK--------------VGG---SVVYSTCSLSP-IQNDGVVHMS 248
R V ++H L + VGG ++ + CS + I D V +
Sbjct: 404 ADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTN 463
Query: 249 LKRIWEETGCEIEIKHALKLV-------KVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
+ ++ + L + K GG +VY TCS++ +N+ VV +LK+
Sbjct: 464 KDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKK 519
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 148 YYCMDGAS-LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLAL 206
+Y + GAS +LPV+AL + ++ +LDMC APGGKT Q + + +L A
Sbjct: 365 HYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLM------KNTGVILANDAN 418
Query: 207 NIRPYDTVLDIHALKLVK--------------VGG---SVVYSTCSLSP-IQNDGVVHMS 248
R V ++H L + VGG ++ + CS + I D V +
Sbjct: 419 AERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTN 478
Query: 249 L--KRIWEETGCEIE-----IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
K I + E I K GG +VY TCS++ +N+ VV +LK+
Sbjct: 479 KDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKK 534
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDG---ASLLP 202
+Y + +S+LPV AL + V+D+ AAPG KT + + + AS +
Sbjct: 97 FYIQEASSMLPVAALFADGNAPQRVMDIAAAPGSKTTQIAARMNNEGTILANEFSASRVK 156
Query: 203 VLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL--------SPIQNDGVVHM---SLKR 251
VL NI + I + L G V + +P +GVV +LK
Sbjct: 157 VLHANI----SRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN 212
Query: 252 IWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGV 290
E+ EI I A +++GG++VYSTC+L+ +N+ V
Sbjct: 213 WSPESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNREENEAV 257
>sp|C6DFU6|RSMF_PECCP Ribosomal RNA small subunit methyltransferase F OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rsmF PE=3
SV=1
Length = 484
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
Query: 148 YYCMDGASLLPVLALNIR--PYDTVLDMCAAPGGKTL-VALQ-----TLYPDYYCMDGAS 199
+Y + +S+LPV AL R +TVLD+ AAPG KT +A + + + Y AS
Sbjct: 98 FYIQEASSMLPVSALFHRNEALETVLDVAAAPGSKTTQIAARLDNKGAIVANEY---SAS 154
Query: 200 LLPVLALNIRPYDTVLDIHALKLVKVGGSVV------YSTCSL--SPIQNDGVV------ 245
+ VL NI + + + G V Y L +P +GVV
Sbjct: 155 RVKVLHANI----SRCGVSNTAMTHFDGRVFGAALPEYFDAILLDAPCSGEGVVRKDPAA 210
Query: 246 --HMSLKRIWEETGCEIE-IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEET 302
H S + I E + + I A +K GG ++YSTC+L+ +N V H +
Sbjct: 211 MSHWSPESITEIAATQRDLILSAFHALKPGGVMIYSTCTLNKQENQQVCHWLQAQF--PD 268
Query: 303 GCEIE-IKDL 311
CE E ++DL
Sbjct: 269 ACEFESLRDL 278
>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
Length = 311
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 29/168 (17%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCM-------DGASLLPVL 204
+ +S++P + L+ +P + +LDM AAPG KT Q + + C+ D A+ +L
Sbjct: 96 EASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYM-ENEGCIIANDAKRDRAN---IL 151
Query: 205 ALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL------SPIQNDGVVHMSLK--RIWEET 256
N+ ++ A VK G + +P + G++ + K R W
Sbjct: 152 IANLTRAGVLI---AKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIG 208
Query: 257 GCEIE-------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
I A K +K GG +VYSTC++ P++N+ VV L++
Sbjct: 209 KVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQK 256
>sp|Q3IHA0|RSMF_PSEHT Ribosomal RNA small subunit methyltransferase F
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rsmF PE=3 SV=2
Length = 482
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 149 YCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKT--LVALQTLYPDYYCMD-GASLLPV 203
Y + +S+LP +AL +I + VLDM +APG KT L AL + +S L V
Sbjct: 99 YVQEASSMLPPIALKQSIEHTNYVLDMASAPGSKTSQLAALMNNQGVLVANELSSSRLKV 158
Query: 204 LALNIRP----------YDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHM---SLK 250
L+ ++ +D V I + + S++ +P +G V +LK
Sbjct: 159 LSATLKRMGVGNCALSHFDGV--IFGNYMFECFDSILLD----APCSGEGTVRKDADALK 212
Query: 251 RIWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295
++ EI IK A +K GG++VYSTC+L+P++N V L
Sbjct: 213 NWSIDSNIEIAQVQKDLIKSAFYALKPGGTLVYSTCTLTPLENQHVCDFLL 263
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 53/176 (30%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPY 211
D +S+L AL+ + +TVLD CAAPGGK+ + L + +
Sbjct: 237 DESSMLVARALDPKSDETVLDACAAPGGKS-AHIAELMKNKGSV---------------- 279
Query: 212 DTVLDIHA--LKLVK-----VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGC------ 258
T LD+H +KL+K +G +++++ + + + RI + C
Sbjct: 280 -TSLDLHKHKVKLIKEAADRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVI 338
Query: 259 -------------------EIEI---KHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292
EI++ + LVK GG++VYSTC++ +ND V+H
Sbjct: 339 RRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIH 394
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
SV=1
Length = 618
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 147 NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCM----DGASLLP 202
+Y +S LPV+AL+ + +LDM AAPGGKT + + + C+ S
Sbjct: 326 HYILQAASSFLPVIALDPHENERILDMAAAPGGKT-TYISAMMKNTGCVFANDANKSRTK 384
Query: 203 VLALNIR----PYDTVLDIHALKLVKVGGSVVYSTCSL-SPIQNDGVV--HMSLKRIWEE 255
L NI V + A + KV G + L +P GV+ S+K E
Sbjct: 385 SLIANIHRLGCTNTIVCNYDAREFPKVIGG--FDRILLDAPCSGTGVIGKDQSVKVSRTE 442
Query: 256 TGCEIEIKHALKLV------------KVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
I+I H K + K GG +VYSTCS++ +++ V+ +L++
Sbjct: 443 KDF-IQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRK 495
>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2
Length = 476
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 31/163 (19%)
Query: 162 LNIRPYDTVLDMCAAPGGKT------------LVALQTLYPDYYCM-DGASLLPVLALNI 208
L+ +P + +LDMCAAPGGKT ++AL + + ASLL + ++
Sbjct: 230 LDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRA 289
Query: 209 RPYDTVLDIHALKLVKVGGS--------------VVYSTCSLSPIQNDGVVHMSLKRIWE 254
+D ALKL G ++ + CS + + +LK +
Sbjct: 290 FCFDAT---KALKLDTTDGIEGGPPFLPESFDRIILDAPCSGMGQRPNMACTWTLKEVTS 346
Query: 255 ETGCEIEIKH-ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296
+ ++ H A++L+K GG +VYSTC+++ +N+ V +L+
Sbjct: 347 YQPLQRKLLHVAVQLLKPGGVLVYSTCTITLAENEEQVAWALR 389
>sp|A7MKH5|RSMF_CROS8 Ribosomal RNA small subunit methyltransferase F OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmF PE=3 SV=2
Length = 480
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 147 NYYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDG---ASLL 201
+Y + +S+LPV AL + V+D+ AAPG KT + + + AS +
Sbjct: 97 QFYIQEASSMLPVAALFADGNTPARVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRV 156
Query: 202 PVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL--------SPIQNDGVVHM---SLK 250
VL NI + IH + L G V + +P +GVV +L+
Sbjct: 157 KVLHANI----SRCGIHNVGLTHFDGRVFGAALPEQFDAILLDAPCSGEGVVRKDPDALR 212
Query: 251 RIWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ EI I A + GG++VYSTC+L+ +N V L R
Sbjct: 213 NWSPQSDQEIAATQRELIDSAFHALAPGGTLVYSTCTLNREENQETVRWLLAR 265
>sp|A9MN78|RSMB_SALAR Ribosomal RNA small subunit methyltransferase B OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmB PE=3 SV=1
Length = 429
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 37/198 (18%)
Query: 127 FPSGDISEFPSPKRGVTGVFNYYC--MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVA 184
+P E P+P + G + D ++ V L + + +LD+CAAPGGKT
Sbjct: 205 YPDAVRLETPAPVHALPGFAEGWVTVQDASAQKCVAFLAPQNGEHILDLCAAPGGKTT-- 262
Query: 185 LQTLYPDYYCMDGASLLPVLALNI------RPYDTVLDIHALKLVKVG-GSVVYSTCSL- 236
+ ++ A VLA+++ R YD + + VK G G C
Sbjct: 263 --------HILEAAPEADVLAVDVDEQRLSRIYDNLKRLGMKATVKQGDGRYPAQWCDEQ 314
Query: 237 --------SPIQNDGVVHMS-----LKR---IWEETGCEIEIKHAL-KLVKVGGSVVYST 279
+P GV+ L+R I E + EI + +K GG++VY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQAEILDTVWPRLKPGGTLVYAT 374
Query: 280 CSLSPIQNDGVVHMSLKR 297
CS+ P +N ++ L+R
Sbjct: 375 CSVLPEENSAQINAFLQR 392
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 26/165 (15%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDG---ASLLP 202
+Y + +S+LPV AL + V+D+ AAPG KT + + + AS +
Sbjct: 97 FYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVK 156
Query: 203 VLALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCSL-SPIQNDGVVHM---SLKR 251
VL NI + I + L G V ++ L +P +GVV +LK
Sbjct: 157 VLHANI----SRCGIRNVALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKN 212
Query: 252 IWEETGCEIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGV 290
E+ EI I A ++ GG++VYSTC+L+ +N+ V
Sbjct: 213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAV 257
>sp|A8FWM8|RSMF_SHESH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1
Length = 478
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 148 YYCMDGASLLPVLALNIRPYD----TVLDMCAAPGGKT--LVALQ----TLYPDYYCMDG 197
+Y + +S+LP +AL D T+LDM +APG KT + A+ L + Y
Sbjct: 91 FYIQEASSMLPPIALFSTKTDKAEHTILDMASAPGSKTTQIAAMMDNSGLLIANEYSSSR 150
Query: 198 ASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL----SPIQNDGVVH---MSLK 250
+L L + +T L +V G +Y +P +G + ++L
Sbjct: 151 VKVLHANVLRMGVSNTALTHFD---ARVFGEYLYDQFDAILLDAPCSGEGTIRKDPLALN 207
Query: 251 RIW--EETGCEIEIKHALK-----LVKVGGSVVYSTCSLSPIQNDGV 290
W E E + AL +K GGS+VYSTC+LS ++N V
Sbjct: 208 N-WGLAENSAIAETQKALLESAFLALKTGGSLVYSTCALSKLENQDV 253
>sp|Q1R644|RSMB_ECOUT Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 127 FPSGDISEFPSPKRGVTGVFNYYC--MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVA 184
+P E P+P + G + D ++ + L + + +LD+CAAPGGKT
Sbjct: 205 YPDAVQLETPAPVHALPGFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKT--- 261
Query: 185 LQTLYPDYYCMDGASLLPVLALNI------RPYDTVLDIHALKLVKVG-GSVVYSTCSL- 236
+ ++ A VLA++I R YD + + VK G G C
Sbjct: 262 -------THILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQ 314
Query: 237 --------SPIQNDGVVHMS-----LKR---IWEETGCEIEIKHAL-KLVKVGGSVVYST 279
+P GV+ L+R I E + EI A+ +K GG++VY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYAT 374
Query: 280 CSLSPIQNDGVVHMSLKRIWEETGCE 305
CS+ P +N + L+R + CE
Sbjct: 375 CSMLPEENSLQIKAFLQRTADAELCE 400
>sp|A1AGI0|RSMB_ECOK1 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O1:K1 / APEC GN=rsmB PE=3 SV=1
Length = 429
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 127 FPSGDISEFPSPKRGVTGVFNYYC--MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVA 184
+P E P+P + G + D ++ + L + + +LD+CAAPGGKT
Sbjct: 205 YPDAVQLETPAPVHALPGFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKT--- 261
Query: 185 LQTLYPDYYCMDGASLLPVLALNI------RPYDTVLDIHALKLVKVG-GSVVYSTCSL- 236
+ ++ A VLA++I R YD + + VK G G C
Sbjct: 262 -------THILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQ 314
Query: 237 --------SPIQNDGVVHMS-----LKR---IWEETGCEIEIKHAL-KLVKVGGSVVYST 279
+P GV+ L+R I E + EI A+ +K GG++VY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYAT 374
Query: 280 CSLSPIQNDGVVHMSLKRIWEETGCE 305
CS+ P +N + L+R + CE
Sbjct: 375 CSMLPEENSLQIKAFLQRTADAELCE 400
>sp|B7MCQ4|RSMB_ECO45 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 127 FPSGDISEFPSPKRGVTGVFNYYC--MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVA 184
+P E P+P + G + D ++ + L + + +LD+CAAPGGKT
Sbjct: 205 YPDAVQLETPAPVHALPGFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKT--- 261
Query: 185 LQTLYPDYYCMDGASLLPVLALNI------RPYDTVLDIHALKLVKVG-GSVVYSTCSL- 236
+ ++ A VLA++I R YD + + VK G G C
Sbjct: 262 -------THILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQ 314
Query: 237 --------SPIQNDGVVHMS-----LKR---IWEETGCEIEIKHAL-KLVKVGGSVVYST 279
+P GV+ L+R I E + EI A+ +K GG++VY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYAT 374
Query: 280 CSLSPIQNDGVVHMSLKRIWEETGCE 305
CS+ P +N + L+R + CE
Sbjct: 375 CSMLPEENSLQIKAFLQRTADAELCE 400
>sp|A3QDA2|RSMF_SHELP Ribosomal RNA small subunit methyltransferase F OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rsmF PE=3 SV=1
Length = 486
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 41/174 (23%)
Query: 148 YYCMDGASLLPVLALNIRPYD-----TVLDMCAAPGGKT--LVALQT----LYPDYYCMD 196
+Y + +S+LP AL P + T+LDM +APG KT L A+ L + Y
Sbjct: 91 FYIQEASSMLPPKALFPEPIEDATSLTLLDMASAPGSKTTQLAAMMNNQGLLVANEYS-- 148
Query: 197 GASLLPVLALNIRPYDTVLDIHALKL----VKVGGSVVYSTCSL----SPIQNDGVVHM- 247
+S + VL N++ + L L +V G ++ + +P +G V
Sbjct: 149 -SSRVKVLHANVQR----MGASNLALTHFDARVFGKYLFESFDAILLDAPCGGEGTVRKD 203
Query: 248 --SLKRIWEETGCEIE---------IKHALKLVKVGGSVVYSTCSLSPIQNDGV 290
+LK W+E+ EIE I+ A +K GGS+VYSTC+L+ +N V
Sbjct: 204 PDALKH-WDES--EIEAIASVQRDLIESAFLALKPGGSLVYSTCTLNRRENQDV 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,013,754
Number of Sequences: 539616
Number of extensions: 5930387
Number of successful extensions: 26370
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 25739
Number of HSP's gapped (non-prelim): 620
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)