Query psy7769
Match_columns 355
No_of_seqs 320 out of 2141
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:21:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0144 Sun tRNA and rRNA cyto 100.0 1.8E-50 3.9E-55 398.6 22.9 250 74-355 81-355 (355)
2 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 5.1E-49 1.1E-53 377.5 14.9 247 74-352 8-283 (283)
3 PRK11933 yebU rRNA (cytosine-C 100.0 7.8E-48 1.7E-52 390.9 22.1 250 75-354 33-307 (470)
4 KOG1122|consensus 100.0 2E-46 4.4E-51 366.3 12.4 220 120-354 201-441 (460)
5 TIGR00446 nop2p NOL1/NOP2/sun 100.0 1.5E-43 3.3E-48 336.3 20.5 243 79-353 1-264 (264)
6 PRK14903 16S rRNA methyltransf 100.0 8.3E-42 1.8E-46 344.9 22.6 249 84-354 131-430 (431)
7 TIGR00563 rsmB ribosomal RNA s 100.0 2.8E-41 6.2E-46 340.6 22.1 242 84-354 134-426 (426)
8 PRK14901 16S rRNA methyltransf 100.0 2.2E-41 4.8E-46 342.2 20.4 233 85-354 147-433 (434)
9 PRK10901 16S rRNA methyltransf 100.0 1.4E-38 2.9E-43 321.3 22.7 237 85-354 141-427 (427)
10 PRK14904 16S rRNA methyltransf 100.0 1.9E-38 4.1E-43 321.8 22.4 246 85-354 149-443 (445)
11 PRK14902 16S rRNA methyltransf 100.0 3.6E-38 7.7E-43 319.6 22.0 247 84-354 146-443 (444)
12 KOG2198|consensus 100.0 2.2E-39 4.8E-44 314.0 11.1 215 131-354 120-374 (375)
13 KOG2360|consensus 100.0 2.5E-32 5.5E-37 265.0 12.7 258 73-354 128-413 (413)
14 COG2242 CobL Precorrin-6B meth 99.4 2.1E-12 4.5E-17 116.3 12.1 122 153-298 21-151 (187)
15 COG2226 UbiE Methylase involve 99.4 1.9E-12 4.2E-17 121.4 9.2 116 155-289 40-164 (238)
16 PF01209 Ubie_methyltran: ubiE 99.3 3E-12 6.5E-17 120.0 7.0 121 157-297 38-168 (233)
17 PRK00377 cbiT cobalt-precorrin 99.2 2.6E-10 5.7E-15 103.7 13.7 138 154-311 28-170 (198)
18 PF12847 Methyltransf_18: Meth 99.2 6.8E-11 1.5E-15 96.5 8.1 103 166-280 1-112 (112)
19 PRK07402 precorrin-6B methylas 99.2 3.5E-10 7.6E-15 102.6 13.1 130 150-297 24-157 (196)
20 KOG1540|consensus 99.2 1.5E-10 3.3E-15 108.5 9.6 125 157-298 91-230 (296)
21 PRK15128 23S rRNA m(5)C1962 me 99.1 3.5E-10 7.7E-15 113.7 12.4 141 148-310 205-368 (396)
22 PRK08287 cobalt-precorrin-6Y C 99.1 2.2E-09 4.8E-14 96.5 14.5 126 150-298 15-147 (187)
23 PRK04266 fibrillarin; Provisio 99.0 2.9E-09 6.3E-14 99.4 12.4 109 161-280 67-177 (226)
24 TIGR00537 hemK_rel_arch HemK-r 99.0 2.9E-09 6.3E-14 95.1 11.9 132 155-297 8-155 (179)
25 TIGR01177 conserved hypothetic 99.0 1.1E-09 2.5E-14 107.2 9.6 107 160-282 176-297 (329)
26 COG1092 Predicted SAM-dependen 99.0 1.6E-09 3.5E-14 108.4 9.3 121 150-288 204-345 (393)
27 PLN02233 ubiquinone biosynthes 99.0 3.1E-09 6.7E-14 101.0 10.5 112 157-282 64-185 (261)
28 PF13659 Methyltransf_26: Meth 98.9 1.7E-09 3.6E-14 89.0 6.8 99 167-281 1-117 (117)
29 PTZ00146 fibrillarin; Provisio 98.9 1.3E-08 2.8E-13 98.2 13.4 117 162-290 128-251 (293)
30 TIGR02752 MenG_heptapren 2-hep 98.9 4.5E-09 9.8E-14 97.1 10.0 114 156-279 35-151 (231)
31 PRK00121 trmB tRNA (guanine-N( 98.9 3.1E-09 6.7E-14 97.2 8.7 131 166-307 40-177 (202)
32 PF05175 MTS: Methyltransferas 98.9 2.2E-09 4.8E-14 95.4 7.5 111 151-279 16-140 (170)
33 PF08704 GCD14: tRNA methyltra 98.9 2.7E-09 5.8E-14 100.9 8.2 115 148-298 24-159 (247)
34 TIGR00138 gidB 16S rRNA methyl 98.9 1.7E-08 3.8E-13 91.0 12.0 114 166-298 42-157 (181)
35 TIGR02469 CbiT precorrin-6Y C5 98.9 1.3E-08 2.8E-13 83.9 10.4 109 159-279 12-122 (124)
36 TIGR00080 pimt protein-L-isoas 98.9 1E-08 2.2E-13 94.5 9.8 107 156-278 67-176 (215)
37 COG2519 GCD14 tRNA(1-methylade 98.9 1.8E-08 4E-13 94.7 11.1 105 148-281 78-198 (256)
38 PF10672 Methyltrans_SAM: S-ad 98.9 3.1E-09 6.6E-14 102.5 6.0 122 148-287 108-246 (286)
39 PRK13942 protein-L-isoaspartat 98.8 1.4E-08 2.9E-13 93.7 9.2 108 155-278 65-175 (212)
40 PRK14967 putative methyltransf 98.8 4.5E-08 9.8E-13 90.6 12.1 112 163-282 33-162 (223)
41 PRK00107 gidB 16S rRNA methylt 98.8 1.7E-08 3.6E-13 91.7 7.9 103 165-282 44-148 (187)
42 PRK11783 rlmL 23S rRNA m(2)G24 98.8 3.5E-08 7.6E-13 106.0 11.1 122 150-287 525-664 (702)
43 PLN02244 tocopherol O-methyltr 98.8 3.4E-08 7.3E-13 97.5 9.9 106 165-281 117-225 (340)
44 PRK11873 arsM arsenite S-adeno 98.8 5.6E-08 1.2E-12 92.3 10.9 111 161-281 72-185 (272)
45 PRK13944 protein-L-isoaspartat 98.8 4.4E-08 9.5E-13 89.8 9.8 106 157-278 63-172 (205)
46 PRK03522 rumB 23S rRNA methylu 98.7 3.1E-08 6.6E-13 96.7 9.0 96 161-284 168-278 (315)
47 PRK08317 hypothetical protein; 98.7 1.4E-07 3E-12 86.2 12.3 127 159-296 12-145 (241)
48 TIGR00091 tRNA (guanine-N(7)-) 98.7 4.4E-08 9.5E-13 89.0 8.9 122 166-298 16-145 (194)
49 PRK01683 trans-aconitate 2-met 98.7 8.4E-08 1.8E-12 90.3 11.1 103 155-279 20-130 (258)
50 PF01135 PCMT: Protein-L-isoas 98.7 1.6E-08 3.5E-13 93.4 6.0 99 157-278 63-171 (209)
51 COG2518 Pcm Protein-L-isoaspar 98.7 2.6E-08 5.6E-13 91.6 7.3 100 156-280 62-170 (209)
52 PTZ00098 phosphoethanolamine N 98.7 9.9E-08 2.1E-12 90.9 11.0 113 155-280 41-157 (263)
53 PRK10258 biotin biosynthesis p 98.7 4.3E-08 9.3E-13 92.0 8.4 107 150-280 26-141 (251)
54 PF13847 Methyltransf_31: Meth 98.7 3.2E-08 7E-13 85.8 6.9 108 165-281 2-112 (152)
55 TIGR03533 L3_gln_methyl protei 98.7 2.6E-07 5.7E-12 89.0 13.4 113 164-280 119-252 (284)
56 PRK14121 tRNA (guanine-N(7)-)- 98.7 1.2E-07 2.6E-12 94.9 10.7 125 149-282 107-238 (390)
57 TIGR03704 PrmC_rel_meth putati 98.7 9.3E-08 2E-12 90.5 9.4 120 166-297 86-230 (251)
58 TIGR00438 rrmJ cell division p 98.7 2.5E-07 5.4E-12 83.3 11.6 98 162-279 28-146 (188)
59 PRK13168 rumA 23S rRNA m(5)U19 98.6 8.6E-08 1.9E-12 97.8 9.0 94 160-282 291-402 (443)
60 PRK14968 putative methyltransf 98.6 6.8E-07 1.5E-11 79.3 13.5 133 155-297 12-163 (188)
61 PRK15451 tRNA cmo(5)U34 methyl 98.6 2.4E-07 5.3E-12 87.2 11.1 106 164-281 54-166 (247)
62 PRK11207 tellurite resistance 98.6 1.4E-07 3E-12 85.9 9.2 113 154-279 18-134 (197)
63 PLN02336 phosphoethanolamine N 98.6 2.6E-07 5.5E-12 94.7 11.8 115 158-284 258-374 (475)
64 PRK11188 rrmJ 23S rRNA methylt 98.6 2.6E-07 5.6E-12 85.2 10.5 111 164-296 49-179 (209)
65 PRK09489 rsmC 16S ribosomal RN 98.6 1.8E-07 3.8E-12 92.6 9.8 118 151-286 181-310 (342)
66 PRK11036 putative S-adenosyl-L 98.6 1.6E-07 3.4E-12 88.6 8.7 106 165-281 43-151 (255)
67 COG4123 Predicted O-methyltran 98.6 2E-07 4.4E-12 87.9 9.3 135 155-297 33-184 (248)
68 PRK00312 pcm protein-L-isoaspa 98.6 3E-07 6.6E-12 84.2 10.1 107 156-280 68-176 (212)
69 TIGR00479 rumA 23S rRNA (uraci 98.6 2E-07 4.4E-12 94.6 9.1 96 159-282 285-398 (431)
70 PRK11805 N5-glutamine S-adenos 98.6 3.3E-07 7.1E-12 89.4 9.9 108 167-278 134-262 (307)
71 TIGR03534 RF_mod_PrmC protein- 98.6 6.2E-07 1.3E-11 83.4 11.3 124 166-297 87-231 (251)
72 PRK00216 ubiE ubiquinone/menaq 98.5 5.9E-07 1.3E-11 82.5 10.7 110 157-282 42-161 (239)
73 PRK15001 SAM-dependent 23S rib 98.5 3.5E-07 7.6E-12 91.5 9.8 114 151-279 213-340 (378)
74 PRK09328 N5-glutamine S-adenos 98.5 5.7E-07 1.2E-11 85.1 10.7 114 162-279 104-238 (275)
75 TIGR02716 C20_methyl_CrtF C-20 98.5 6.3E-07 1.4E-11 86.8 11.2 121 156-288 139-263 (306)
76 PRK14103 trans-aconitate 2-met 98.5 3.9E-07 8.5E-12 85.9 9.0 102 159-278 22-125 (255)
77 TIGR00740 methyltransferase, p 98.5 4.6E-07 9.9E-12 84.5 9.2 108 164-280 51-162 (239)
78 PRK13943 protein-L-isoaspartat 98.5 4.9E-07 1.1E-11 88.7 9.6 98 159-279 73-180 (322)
79 COG0293 FtsJ 23S rRNA methylas 98.5 1.2E-06 2.7E-11 80.4 11.5 115 164-298 43-175 (205)
80 PLN02396 hexaprenyldihydroxybe 98.5 3E-07 6.4E-12 90.3 7.7 107 163-280 128-236 (322)
81 PRK00517 prmA ribosomal protei 98.5 1.3E-06 2.9E-11 82.3 11.7 118 155-297 106-228 (250)
82 TIGR00477 tehB tellurite resis 98.5 3.9E-07 8.5E-12 82.9 7.7 108 153-279 17-133 (195)
83 PF02353 CMAS: Mycolic acid cy 98.5 3.5E-07 7.6E-12 87.8 7.6 112 157-282 53-169 (273)
84 TIGR00536 hemK_fam HemK family 98.5 1.1E-06 2.3E-11 84.6 10.6 113 166-282 114-247 (284)
85 TIGR00452 methyltransferase, p 98.5 7.3E-07 1.6E-11 87.3 9.5 139 133-287 83-233 (314)
86 PF08241 Methyltransf_11: Meth 98.5 4.1E-07 8.9E-12 70.9 6.3 93 171-277 1-95 (95)
87 PRK00050 16S rRNA m(4)C1402 me 98.4 8.9E-07 1.9E-11 85.9 9.4 52 158-209 11-65 (296)
88 PRK11705 cyclopropane fatty ac 98.4 1.1E-06 2.4E-11 88.1 10.4 105 157-282 158-270 (383)
89 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 3.6E-06 7.8E-11 76.4 11.6 107 158-283 31-147 (223)
90 PRK15068 tRNA mo(5)U34 methylt 98.4 2.2E-06 4.8E-11 84.1 10.5 116 157-282 113-229 (322)
91 PF05958 tRNA_U5-meth_tr: tRNA 98.4 1.2E-06 2.5E-11 87.0 8.4 60 159-225 190-251 (352)
92 COG2230 Cfa Cyclopropane fatty 98.3 2.5E-06 5.5E-11 82.0 9.5 115 156-284 62-181 (283)
93 TIGR03438 probable methyltrans 98.3 3E-06 6.5E-11 82.2 9.9 113 165-282 62-180 (301)
94 PF02475 Met_10: Met-10+ like- 98.3 9.1E-07 2E-11 81.3 5.9 99 164-277 99-200 (200)
95 PLN02336 phosphoethanolamine N 98.3 4.2E-06 9.2E-11 85.8 11.5 118 155-283 26-146 (475)
96 TIGR00406 prmA ribosomal prote 98.3 3.4E-06 7.4E-11 81.4 10.1 126 153-297 144-274 (288)
97 COG2813 RsmC 16S RNA G1207 met 98.3 2.7E-06 5.9E-11 82.2 9.3 118 148-282 140-269 (300)
98 COG2265 TrmA SAM-dependent met 98.3 1.9E-06 4.2E-11 87.6 8.5 106 158-297 285-407 (432)
99 TIGR02072 BioC biotin biosynth 98.3 3.6E-06 7.9E-11 77.0 9.4 101 165-279 33-135 (240)
100 smart00828 PKS_MT Methyltransf 98.3 5.4E-06 1.2E-10 76.2 10.1 101 169-280 2-105 (224)
101 COG1041 Predicted DNA modifica 98.3 2.6E-06 5.6E-11 83.7 8.2 106 159-280 190-311 (347)
102 PLN02781 Probable caffeoyl-CoA 98.3 8.5E-06 1.9E-10 76.4 11.4 119 155-282 57-181 (234)
103 PRK06922 hypothetical protein; 98.3 4.9E-06 1.1E-10 88.0 10.7 114 159-283 411-541 (677)
104 TIGR02085 meth_trns_rumB 23S r 98.3 3E-06 6.6E-11 84.7 8.7 92 163-282 230-336 (374)
105 COG2227 UbiG 2-polyprenyl-3-me 98.2 1.6E-06 3.5E-11 81.1 6.1 97 165-281 58-163 (243)
106 PRK12335 tellurite resistance 98.2 5.9E-06 1.3E-10 79.5 9.8 104 161-278 115-222 (287)
107 KOG1270|consensus 98.2 2.9E-06 6.3E-11 80.3 7.2 99 163-279 86-195 (282)
108 PLN02490 MPBQ/MSBQ methyltrans 98.2 3.9E-06 8.4E-11 83.0 8.4 95 165-279 112-215 (340)
109 PRK04338 N(2),N(2)-dimethylgua 98.2 3.4E-06 7.4E-11 84.7 8.0 98 157-281 47-159 (382)
110 COG2520 Predicted methyltransf 98.2 3.5E-06 7.6E-11 83.1 7.8 103 164-282 186-292 (341)
111 PF13649 Methyltransf_25: Meth 98.2 1.9E-06 4.1E-11 69.6 4.8 93 170-273 1-101 (101)
112 PRK14966 unknown domain/N5-glu 98.2 7.1E-06 1.5E-10 83.0 9.7 133 156-297 240-395 (423)
113 PLN02476 O-methyltransferase 98.2 1.5E-05 3.4E-10 76.6 11.4 124 151-283 103-232 (278)
114 COG2263 Predicted RNA methylas 98.2 9.3E-06 2E-10 73.6 9.0 109 160-297 39-158 (198)
115 PF02390 Methyltransf_4: Putat 98.2 2.1E-06 4.5E-11 78.5 4.6 121 168-299 19-147 (195)
116 PF08242 Methyltransf_12: Meth 98.1 9.5E-07 2.1E-11 70.8 1.9 88 171-275 1-99 (99)
117 PF01269 Fibrillarin: Fibrilla 98.1 1.7E-05 3.6E-10 73.7 9.8 123 155-298 56-200 (229)
118 COG0220 Predicted S-adenosylme 98.1 3.8E-06 8.2E-11 78.6 5.7 115 168-293 50-172 (227)
119 COG2264 PrmA Ribosomal protein 98.1 1.3E-05 2.7E-10 77.8 9.4 125 152-296 146-277 (300)
120 TIGR03840 TMPT_Se_Te thiopurin 98.1 1.8E-05 4E-10 73.2 10.1 111 165-283 33-156 (213)
121 KOG2915|consensus 98.1 1E-05 2.2E-10 77.0 8.1 115 148-296 89-221 (314)
122 TIGR01983 UbiG ubiquinone bios 98.1 1.6E-05 3.5E-10 72.8 9.2 106 165-281 44-151 (224)
123 PF01728 FtsJ: FtsJ-like methy 98.1 1E-05 2.2E-10 72.2 7.3 36 166-201 23-59 (181)
124 PLN03075 nicotianamine synthas 98.1 2E-05 4.3E-10 76.5 9.6 105 166-280 123-234 (296)
125 COG4106 Tam Trans-aconitate me 98.0 1.4E-05 3E-10 74.0 7.7 96 164-281 28-131 (257)
126 PRK05134 bifunctional 3-demeth 98.0 2.7E-05 5.9E-10 72.0 9.8 114 157-282 39-154 (233)
127 PRK01544 bifunctional N5-gluta 98.0 2.7E-05 5.7E-10 81.0 10.5 123 166-296 138-282 (506)
128 COG4122 Predicted O-methyltran 98.0 7.8E-05 1.7E-09 69.4 12.3 118 153-283 46-170 (219)
129 PRK11088 rrmA 23S rRNA methylt 98.0 1.4E-05 3.1E-10 76.1 7.6 93 165-280 84-182 (272)
130 PF03602 Cons_hypoth95: Conser 98.0 1E-05 2.2E-10 73.3 5.6 90 165-277 41-151 (183)
131 PRK10909 rsmD 16S rRNA m(2)G96 98.0 2.4E-05 5.2E-10 71.8 8.2 58 165-227 52-111 (199)
132 PRK04457 spermidine synthase; 98.0 4.6E-05 1E-09 72.7 10.4 100 165-282 65-180 (262)
133 PF03848 TehB: Tellurite resis 98.0 3.2E-05 7E-10 70.6 8.7 103 159-279 23-133 (192)
134 KOG1271|consensus 98.0 8E-06 1.7E-10 73.7 4.6 103 168-287 69-189 (227)
135 TIGR00006 S-adenosyl-methyltra 98.0 6.7E-05 1.5E-09 73.1 11.4 51 159-209 13-65 (305)
136 PF06325 PrmA: Ribosomal prote 98.0 1.1E-05 2.3E-10 78.4 5.6 120 152-294 145-272 (295)
137 TIGR00308 TRM1 tRNA(guanine-26 97.9 2E-05 4.4E-10 78.9 7.5 85 168-278 46-146 (374)
138 TIGR02143 trmA_only tRNA (urac 97.9 4E-05 8.7E-10 76.2 9.5 54 168-227 199-254 (353)
139 PRK05031 tRNA (uracil-5-)-meth 97.9 3.5E-05 7.5E-10 76.9 9.0 55 167-227 207-263 (362)
140 PRK05785 hypothetical protein; 97.9 3.4E-05 7.3E-10 71.9 8.1 83 166-273 51-141 (226)
141 COG2890 HemK Methylase of poly 97.9 4.6E-05 9.9E-10 73.5 9.1 139 150-295 92-251 (280)
142 TIGR02021 BchM-ChlM magnesium 97.9 6.4E-05 1.4E-09 69.1 9.7 101 164-279 53-158 (219)
143 COG1889 NOP1 Fibrillarin-like 97.9 0.00013 2.7E-09 67.0 11.2 114 164-298 74-202 (231)
144 KOG2187|consensus 97.9 2.5E-05 5.4E-10 79.9 7.3 124 149-285 360-495 (534)
145 PRK13255 thiopurine S-methyltr 97.9 8.7E-05 1.9E-09 69.0 10.4 127 151-284 20-160 (218)
146 PF01170 UPF0020: Putative RNA 97.9 9.4E-05 2E-09 66.6 10.3 106 159-281 21-151 (179)
147 PHA03411 putative methyltransf 97.9 7.6E-05 1.6E-09 71.7 9.9 128 162-298 60-205 (279)
148 TIGR00095 RNA methyltransferas 97.8 4.7E-05 1E-09 69.2 7.4 57 166-227 49-108 (189)
149 smart00138 MeTrc Methyltransfe 97.8 5.8E-05 1.3E-09 72.0 8.2 109 165-280 98-243 (264)
150 smart00650 rADc Ribosomal RNA 97.8 4.2E-05 9E-10 67.7 6.5 66 158-231 5-72 (169)
151 PF13489 Methyltransf_23: Meth 97.8 6.9E-05 1.5E-09 64.3 7.5 100 155-282 10-118 (161)
152 cd02440 AdoMet_MTases S-adenos 97.8 7.9E-05 1.7E-09 57.3 7.2 100 169-278 1-103 (107)
153 PF01596 Methyltransf_3: O-met 97.8 0.0001 2.3E-09 67.9 9.1 108 166-282 45-158 (205)
154 PRK00274 ksgA 16S ribosomal RN 97.8 3.7E-05 8E-10 73.6 6.1 68 156-232 32-101 (272)
155 PF05401 NodS: Nodulation prot 97.8 5.4E-05 1.2E-09 69.2 6.8 117 148-280 25-147 (201)
156 PRK00811 spermidine synthase; 97.7 0.00022 4.7E-09 68.8 10.7 127 160-298 71-208 (283)
157 TIGR00417 speE spermidine synt 97.7 0.00022 4.8E-09 68.1 10.5 117 162-297 69-202 (270)
158 PF09445 Methyltransf_15: RNA 97.7 3.5E-05 7.6E-10 68.6 4.6 111 168-295 1-132 (163)
159 PRK06202 hypothetical protein; 97.7 0.0001 2.2E-09 68.5 7.8 103 159-281 53-168 (232)
160 COG0742 N6-adenine-specific me 97.7 9.1E-05 2E-09 67.3 7.2 91 165-277 42-152 (187)
161 PRK14896 ksgA 16S ribosomal RN 97.7 7.3E-05 1.6E-09 71.0 6.9 75 149-231 11-88 (258)
162 KOG2904|consensus 97.7 0.0002 4.4E-09 68.4 9.6 122 166-298 148-302 (328)
163 PRK01581 speE spermidine synth 97.7 0.00035 7.7E-09 69.6 10.8 121 158-296 143-283 (374)
164 PTZ00338 dimethyladenosine tra 97.7 7.5E-05 1.6E-09 72.5 5.9 79 148-232 17-99 (294)
165 PHA03412 putative methyltransf 97.6 0.00014 3E-09 68.5 7.4 128 150-296 36-191 (241)
166 PF01795 Methyltransf_5: MraW 97.6 0.0002 4.4E-09 69.9 8.7 52 158-209 12-65 (310)
167 PF03291 Pox_MCEL: mRNA cappin 97.6 0.00021 4.7E-09 70.5 8.6 104 166-282 62-189 (331)
168 PF02384 N6_Mtase: N-6 DNA Met 97.6 9.3E-05 2E-09 71.6 5.8 143 148-296 28-202 (311)
169 TIGR03587 Pse_Me-ase pseudamin 97.6 0.00046 1E-08 63.4 9.5 47 163-209 40-88 (204)
170 PRK01544 bifunctional N5-gluta 97.5 0.00012 2.6E-09 76.1 6.0 119 165-298 346-475 (506)
171 COG2521 Predicted archaeal met 97.5 0.00013 2.8E-09 68.3 5.3 113 159-279 127-245 (287)
172 PLN02672 methionine S-methyltr 97.5 0.00032 7E-09 78.4 9.1 128 167-297 119-293 (1082)
173 KOG1099|consensus 97.5 0.00024 5.3E-09 66.2 6.5 33 168-200 43-84 (294)
174 PRK07580 Mg-protoporphyrin IX 97.5 0.00039 8.5E-09 63.8 7.9 57 164-226 61-120 (230)
175 COG0030 KsgA Dimethyladenosine 97.5 0.00023 5E-09 67.8 6.4 79 148-234 11-92 (259)
176 KOG1596|consensus 97.5 0.00086 1.9E-08 63.1 9.7 123 155-298 139-283 (317)
177 TIGR00755 ksgA dimethyladenosi 97.4 0.00027 5.9E-09 66.7 6.4 78 148-233 10-90 (253)
178 PRK03612 spermidine synthase; 97.4 0.00092 2E-08 69.8 10.6 117 165-298 296-432 (521)
179 PRK10742 putative methyltransf 97.4 0.00061 1.3E-08 64.6 8.2 71 155-227 75-154 (250)
180 KOG1541|consensus 97.4 0.001 2.2E-08 61.9 9.4 133 148-298 30-175 (270)
181 COG4076 Predicted RNA methylas 97.3 0.00048 1E-08 62.6 6.5 97 167-276 33-132 (252)
182 PF02527 GidB: rRNA small subu 97.3 0.00027 5.8E-09 64.2 4.7 91 169-280 51-149 (184)
183 KOG1661|consensus 97.3 0.00028 6E-09 65.1 4.7 106 159-278 73-192 (237)
184 KOG4589|consensus 97.3 0.0018 3.8E-08 58.9 9.6 111 164-298 67-200 (232)
185 KOG2899|consensus 97.3 0.00062 1.3E-08 64.1 6.8 44 166-209 58-103 (288)
186 COG3963 Phospholipid N-methylt 97.3 0.0014 3.1E-08 58.5 8.5 97 163-281 45-158 (194)
187 TIGR00478 tly hemolysin TlyA f 97.3 0.00042 9.1E-09 65.0 5.3 38 165-203 74-111 (228)
188 PLN02585 magnesium protoporphy 97.2 0.00091 2E-08 65.6 7.8 60 166-227 144-206 (315)
189 PLN02366 spermidine synthase 97.2 0.0039 8.5E-08 61.0 11.2 126 166-298 91-223 (308)
190 COG0275 Predicted S-adenosylme 97.1 0.0038 8.3E-08 60.6 10.4 52 158-209 15-69 (314)
191 PF12147 Methyltransf_20: Puta 97.1 0.0041 8.9E-08 60.2 10.5 128 167-307 136-275 (311)
192 COG0357 GidB Predicted S-adeno 97.1 0.001 2.2E-08 61.8 6.1 90 167-277 68-166 (215)
193 PLN02589 caffeoyl-CoA O-methyl 97.1 0.0015 3.2E-08 62.1 7.1 117 155-280 68-191 (247)
194 KOG1663|consensus 97.1 0.0019 4.2E-08 60.3 7.6 121 150-282 57-186 (237)
195 PF00398 RrnaAD: Ribosomal RNA 97.0 0.0017 3.6E-08 61.8 7.2 78 149-234 12-92 (262)
196 KOG1098|consensus 97.0 0.00081 1.8E-08 70.3 5.1 116 164-296 42-172 (780)
197 PF05219 DREV: DREV methyltran 97.0 0.0014 3.1E-08 62.3 6.2 91 166-278 94-187 (265)
198 PRK13256 thiopurine S-methyltr 96.9 0.0053 1.2E-07 57.5 9.5 116 163-283 40-167 (226)
199 KOG2361|consensus 96.9 0.0016 3.5E-08 61.2 5.8 100 169-282 74-186 (264)
200 PF00891 Methyltransf_2: O-met 96.8 0.012 2.6E-07 54.8 10.3 113 160-292 94-212 (241)
201 PRK11760 putative 23S rRNA C24 96.7 0.002 4.2E-08 63.8 5.1 58 164-232 209-266 (357)
202 PF05185 PRMT5: PRMT5 arginine 96.7 0.0023 5E-08 65.7 5.7 116 167-294 187-314 (448)
203 KOG0820|consensus 96.6 0.006 1.3E-07 58.4 7.3 117 160-283 52-180 (315)
204 PLN02823 spermine synthase 96.6 0.017 3.7E-07 57.2 10.8 125 158-297 96-238 (336)
205 PF08123 DOT1: Histone methyla 96.5 0.014 3.1E-07 53.8 9.2 45 159-203 35-79 (205)
206 KOG1975|consensus 96.4 0.008 1.7E-07 58.9 7.0 126 155-298 108-250 (389)
207 PF05724 TPMT: Thiopurine S-me 96.4 0.0046 1E-07 57.5 4.9 117 162-286 33-162 (218)
208 KOG4300|consensus 96.3 0.0061 1.3E-07 56.4 5.2 115 162-298 72-198 (252)
209 TIGR03439 methyl_EasF probable 96.3 0.013 2.8E-07 57.7 7.9 124 165-295 75-210 (319)
210 TIGR01444 fkbM_fam methyltrans 96.3 0.0077 1.7E-07 51.1 5.2 53 169-225 1-55 (143)
211 KOG2730|consensus 96.2 0.0062 1.3E-07 56.7 4.8 58 166-229 94-154 (263)
212 PLN02232 ubiquinone biosynthes 96.2 0.016 3.4E-07 51.0 7.0 75 194-282 1-84 (160)
213 COG4976 Predicted methyltransf 96.0 0.0058 1.3E-07 57.3 3.4 109 163-285 122-231 (287)
214 PF02005 TRM: N2,N2-dimethylgu 96.0 0.0088 1.9E-07 60.2 4.9 92 166-282 49-156 (377)
215 PF08003 Methyltransf_9: Prote 95.9 0.042 9.2E-07 53.6 8.9 112 158-287 107-227 (315)
216 TIGR02081 metW methionine bios 95.7 0.047 1E-06 49.2 8.1 38 165-203 12-49 (194)
217 PF10294 Methyltransf_16: Puta 95.5 0.034 7.3E-07 49.7 6.2 113 164-283 43-159 (173)
218 COG0116 Predicted N6-adenine-s 95.5 0.072 1.6E-06 53.5 9.0 115 161-281 186-346 (381)
219 COG1189 Predicted rRNA methyla 95.5 0.016 3.4E-07 54.6 4.0 37 166-203 79-115 (245)
220 KOG2671|consensus 95.4 0.03 6.5E-07 55.3 5.9 123 151-280 192-355 (421)
221 PF01564 Spermine_synth: Sperm 95.4 0.067 1.4E-06 50.6 8.2 123 158-298 69-208 (246)
222 KOG3010|consensus 95.4 0.091 2E-06 49.7 8.7 117 162-298 28-156 (261)
223 PRK11727 23S rRNA mA1618 methy 95.2 0.022 4.8E-07 56.1 4.5 44 166-209 114-159 (321)
224 COG4798 Predicted methyltransf 95.2 0.33 7.1E-06 44.8 11.5 174 162-354 44-237 (238)
225 TIGR02987 met_A_Alw26 type II 95.1 0.072 1.6E-06 55.6 8.2 60 150-209 9-84 (524)
226 KOG1499|consensus 95.1 0.081 1.8E-06 52.3 7.8 108 165-284 59-172 (346)
227 KOG1500|consensus 95.0 0.072 1.6E-06 52.7 7.2 114 166-290 177-295 (517)
228 KOG3420|consensus 94.8 0.022 4.7E-07 50.1 2.6 44 165-209 47-92 (185)
229 COG1063 Tdh Threonine dehydrog 94.7 0.14 3E-06 50.8 8.6 97 163-281 165-271 (350)
230 KOG0024|consensus 94.6 0.31 6.7E-06 48.0 10.5 106 148-281 150-275 (354)
231 COG1867 TRM1 N2,N2-dimethylgua 94.3 0.16 3.4E-06 50.8 7.8 86 167-278 53-153 (380)
232 PF04445 SAM_MT: Putative SAM- 94.2 0.15 3.2E-06 48.2 7.0 73 155-229 62-143 (234)
233 PRK04148 hypothetical protein; 94.2 0.096 2.1E-06 45.3 5.3 38 164-203 14-52 (134)
234 COG0421 SpeE Spermidine syntha 94.1 0.36 7.7E-06 46.8 9.7 116 155-281 66-192 (282)
235 KOG2078|consensus 93.9 0.034 7.4E-07 56.3 2.2 62 164-229 247-310 (495)
236 PRK11783 rlmL 23S rRNA m(2)G24 93.8 0.36 7.8E-06 52.4 10.1 62 165-230 189-295 (702)
237 PF05891 Methyltransf_PK: AdoM 93.8 0.091 2E-06 49.0 4.7 101 166-278 55-160 (218)
238 PF06080 DUF938: Protein of un 93.6 0.25 5.4E-06 45.7 7.3 124 166-298 25-164 (204)
239 PF07021 MetW: Methionine bios 93.6 0.1 2.2E-06 47.8 4.6 39 164-203 11-49 (193)
240 PF04816 DUF633: Family of unk 93.5 0.27 5.9E-06 45.4 7.4 111 170-310 1-123 (205)
241 PF13679 Methyltransf_32: Meth 93.3 0.14 3.1E-06 44.0 4.9 46 164-209 23-74 (141)
242 cd00315 Cyt_C5_DNA_methylase C 92.6 0.14 2.9E-06 49.2 4.1 69 169-238 2-76 (275)
243 PF06962 rRNA_methylase: Putat 92.3 0.13 2.8E-06 44.8 3.1 98 192-298 1-113 (140)
244 PF11599 AviRa: RRNA methyltra 92.2 0.21 4.5E-06 46.7 4.5 58 152-209 34-98 (246)
245 COG3897 Predicted methyltransf 92.0 0.13 2.7E-06 47.4 2.9 57 166-228 79-137 (218)
246 KOG1253|consensus 91.8 0.11 2.3E-06 53.7 2.5 92 164-282 107-218 (525)
247 COG0500 SmtA SAM-dependent met 91.6 1.9 4E-05 33.8 9.1 99 170-287 52-163 (257)
248 COG0286 HsdM Type I restrictio 91.4 0.87 1.9E-05 47.4 8.7 146 148-297 168-346 (489)
249 KOG3115|consensus 91.1 0.47 1E-05 44.0 5.6 109 166-282 60-186 (249)
250 PRK11524 putative methyltransf 90.6 0.32 7E-06 46.8 4.4 43 165-209 207-251 (284)
251 KOG3178|consensus 90.2 0.87 1.9E-05 45.2 7.0 105 160-283 167-279 (342)
252 PF04989 CmcI: Cephalosporin h 89.6 0.7 1.5E-05 42.8 5.4 121 149-277 14-145 (206)
253 PF13578 Methyltransf_24: Meth 89.5 0.57 1.2E-05 37.6 4.4 85 171-278 1-104 (106)
254 KOG3987|consensus 89.1 0.16 3.4E-06 47.3 0.8 35 167-203 113-147 (288)
255 TIGR02822 adh_fam_2 zinc-bindi 89.1 2.2 4.8E-05 41.5 8.9 88 162-278 161-253 (329)
256 PF05148 Methyltransf_8: Hypot 88.9 2 4.4E-05 40.0 7.9 126 149-311 55-185 (219)
257 KOG3191|consensus 88.8 0.65 1.4E-05 42.4 4.5 119 167-297 44-183 (209)
258 PF01555 N6_N4_Mtase: DNA meth 88.3 0.59 1.3E-05 42.0 4.0 38 164-203 189-226 (231)
259 PRK10611 chemotaxis methyltran 88.0 1.4 3.1E-05 42.7 6.7 36 168-203 117-160 (287)
260 cd08283 FDH_like_1 Glutathione 87.6 2.6 5.6E-05 41.9 8.5 43 161-203 179-222 (386)
261 COG2933 Predicted SAM-dependen 87.1 0.62 1.4E-05 44.8 3.5 57 164-231 209-265 (358)
262 COG1064 AdhP Zn-dependent alco 85.8 3.5 7.5E-05 41.1 8.1 46 162-208 162-209 (339)
263 PRK13699 putative methylase; P 85.3 1.1 2.4E-05 41.8 4.3 44 164-209 161-206 (227)
264 PF01739 CheR: CheR methyltran 85.0 1.5 3.2E-05 40.2 4.8 107 167-280 32-176 (196)
265 KOG2782|consensus 84.3 0.92 2E-05 42.6 3.1 46 158-203 35-80 (303)
266 PF03141 Methyltransf_29: Puta 83.8 0.96 2.1E-05 47.0 3.3 98 169-283 120-223 (506)
267 KOG1197|consensus 83.1 4.6 0.0001 39.0 7.3 46 163-209 143-192 (336)
268 PF09243 Rsm22: Mitochondrial 83.1 1.3 2.8E-05 42.6 3.7 42 168-209 35-78 (274)
269 PF03059 NAS: Nicotianamine sy 82.9 3.7 8E-05 39.7 6.7 98 168-278 122-229 (276)
270 TIGR03451 mycoS_dep_FDH mycoth 82.2 5.6 0.00012 38.9 8.0 40 162-203 172-214 (358)
271 PF00107 ADH_zinc_N: Zinc-bind 81.6 0.65 1.4E-05 38.3 1.0 75 177-282 2-92 (130)
272 PRK00536 speE spermidine synth 80.5 16 0.00035 35.0 10.1 115 156-298 63-188 (262)
273 cd08237 ribitol-5-phosphate_DH 80.3 5.1 0.00011 39.1 6.9 41 163-203 160-202 (341)
274 PF00145 DNA_methylase: C-5 cy 80.3 1.6 3.5E-05 41.6 3.3 130 169-306 2-137 (335)
275 PRK09880 L-idonate 5-dehydroge 79.7 13 0.00028 36.1 9.5 39 163-203 166-207 (343)
276 KOG1269|consensus 77.6 3.9 8.6E-05 41.1 5.2 48 155-203 99-146 (364)
277 PHA01634 hypothetical protein 77.5 3.5 7.6E-05 35.7 4.1 43 166-209 28-72 (156)
278 cd08281 liver_ADH_like1 Zinc-d 76.9 12 0.00027 36.7 8.5 40 162-203 187-229 (371)
279 TIGR03366 HpnZ_proposed putati 76.7 8.7 0.00019 36.2 7.1 40 162-203 116-158 (280)
280 PRK09424 pntA NAD(P) transhydr 76.3 15 0.00032 38.7 9.1 39 164-203 162-201 (509)
281 KOG1227|consensus 76.1 1.2 2.6E-05 43.7 1.0 44 166-209 194-239 (351)
282 COG2384 Predicted SAM-dependen 75.9 19 0.00041 33.9 8.7 110 165-298 15-134 (226)
283 KOG1709|consensus 75.7 25 0.00055 33.2 9.5 97 165-279 100-206 (271)
284 TIGR00675 dcm DNA-methyltransf 75.6 3.5 7.6E-05 40.3 4.1 69 170-239 1-74 (315)
285 PF01861 DUF43: Protein of unk 75.4 18 0.00039 34.4 8.7 106 166-297 44-168 (243)
286 PF03141 Methyltransf_29: Puta 74.9 11 0.00024 39.4 7.6 47 257-311 445-491 (506)
287 TIGR03201 dearomat_had 6-hydro 73.7 16 0.00035 35.6 8.3 41 162-203 162-203 (349)
288 KOG3673|consensus 73.4 7.6 0.00016 40.9 6.0 28 249-276 367-397 (845)
289 TIGR00497 hsdM type I restrict 72.3 12 0.00027 38.9 7.5 56 148-203 197-258 (501)
290 PF11899 DUF3419: Protein of u 71.6 5.9 0.00013 40.1 4.7 48 154-203 23-70 (380)
291 TIGR01202 bchC 2-desacetyl-2-h 66.8 29 0.00062 33.3 8.3 37 165-203 143-182 (308)
292 COG0270 Dcm Site-specific DNA 66.5 7.9 0.00017 38.1 4.4 74 168-242 4-85 (328)
293 cd08230 glucose_DH Glucose deh 64.6 27 0.00058 34.0 7.7 37 164-203 170-212 (355)
294 PRK07576 short chain dehydroge 64.0 74 0.0016 29.5 10.3 37 166-203 8-46 (264)
295 PRK08339 short chain dehydroge 63.7 79 0.0017 29.3 10.4 57 167-228 8-68 (263)
296 PRK08324 short chain dehydroge 63.7 55 0.0012 35.4 10.5 108 166-280 421-558 (681)
297 PLN02740 Alcohol dehydrogenase 63.6 47 0.001 32.8 9.3 40 162-203 194-236 (381)
298 KOG3045|consensus 63.6 5.3 0.00012 38.6 2.4 51 257-312 242-292 (325)
299 PRK10309 galactitol-1-phosphat 63.2 43 0.00094 32.3 8.9 40 162-203 156-198 (347)
300 PF04672 Methyltransf_19: S-ad 63.1 42 0.00091 32.4 8.4 115 168-292 70-201 (267)
301 PRK12939 short chain dehydroge 61.5 85 0.0018 28.2 10.0 56 167-228 7-66 (250)
302 cd08254 hydroxyacyl_CoA_DH 6-h 61.2 31 0.00068 32.6 7.4 40 163-203 162-202 (338)
303 PRK07063 short chain dehydroge 59.8 1.1E+02 0.0024 27.9 10.6 58 167-228 7-68 (260)
304 PLN02827 Alcohol dehydrogenase 58.7 52 0.0011 32.6 8.7 40 162-203 189-231 (378)
305 COG4262 Predicted spermidine s 58.5 49 0.0011 33.7 8.1 99 165-278 288-406 (508)
306 PRK07523 gluconate 5-dehydroge 55.3 1.2E+02 0.0027 27.5 10.1 111 166-282 9-148 (255)
307 TIGR02819 fdhA_non_GSH formald 54.5 48 0.001 33.3 7.7 40 162-203 181-223 (393)
308 PRK07533 enoyl-(acyl carrier p 54.5 1.3E+02 0.0028 27.7 10.2 36 166-201 9-47 (258)
309 cd08255 2-desacetyl-2-hydroxye 54.0 75 0.0016 29.3 8.5 44 160-203 91-135 (277)
310 cd08278 benzyl_alcohol_DH Benz 53.8 1E+02 0.0022 30.1 9.8 40 162-203 182-224 (365)
311 PF07942 N2227: N2227-like pro 53.8 2.1E+02 0.0044 27.7 11.5 36 166-203 56-91 (270)
312 COG1352 CheR Methylase of chem 53.7 67 0.0015 30.9 8.1 37 167-203 97-142 (268)
313 COG5459 Predicted rRNA methyla 53.5 11 0.00024 37.9 2.8 22 258-279 204-225 (484)
314 PRK06181 short chain dehydroge 53.3 1.5E+02 0.0032 27.0 10.3 34 169-203 3-38 (263)
315 KOG1501|consensus 52.3 21 0.00045 37.1 4.5 40 169-209 69-110 (636)
316 PRK08643 acetoin reductase; Va 51.5 1.9E+02 0.004 26.3 10.6 37 173-209 7-47 (256)
317 PRK10458 DNA cytosine methylas 51.1 19 0.00041 37.4 4.2 41 167-208 88-130 (467)
318 PRK06194 hypothetical protein; 50.9 1.4E+02 0.003 27.7 9.8 56 167-228 6-65 (287)
319 KOG2651|consensus 50.8 25 0.00055 35.8 4.8 45 155-200 142-186 (476)
320 cd08232 idonate-5-DH L-idonate 50.8 62 0.0013 30.9 7.6 42 162-203 161-203 (339)
321 PRK05872 short chain dehydroge 50.2 2E+02 0.0044 27.1 11.0 37 166-203 8-46 (296)
322 TIGR02825 B4_12hDH leukotriene 49.6 1.1E+02 0.0024 29.0 9.1 40 162-203 134-176 (325)
323 COG2961 ComJ Protein involved 49.5 1E+02 0.0022 29.7 8.4 99 173-298 93-210 (279)
324 PRK07102 short chain dehydroge 49.5 1.7E+02 0.0036 26.4 9.9 55 169-228 3-61 (243)
325 cd08239 THR_DH_like L-threonin 49.2 51 0.0011 31.6 6.7 40 161-203 158-201 (339)
326 PRK09242 tropinone reductase; 49.0 1.8E+02 0.0039 26.4 10.1 112 167-282 9-149 (257)
327 PRK05867 short chain dehydroge 48.7 1.5E+02 0.0032 27.0 9.5 55 167-227 9-67 (253)
328 cd05278 FDH_like Formaldehyde 48.5 55 0.0012 31.2 6.8 40 162-203 163-205 (347)
329 PRK05876 short chain dehydroge 47.5 1.9E+02 0.0041 27.1 10.2 56 167-228 6-65 (275)
330 KOG0822|consensus 46.6 49 0.0011 35.1 6.2 118 169-296 370-497 (649)
331 PRK08594 enoyl-(acyl carrier p 45.7 2.2E+02 0.0048 26.2 10.3 34 166-199 6-42 (257)
332 cd00401 AdoHcyase S-adenosyl-L 45.6 57 0.0012 33.4 6.6 39 165-203 200-238 (413)
333 PRK12826 3-ketoacyl-(acyl-carr 45.5 2.2E+02 0.0048 25.4 10.8 56 167-228 6-65 (251)
334 PRK12429 3-hydroxybutyrate deh 45.2 2.2E+02 0.0047 25.6 10.0 56 167-228 4-63 (258)
335 COG4301 Uncharacterized conser 45.1 62 0.0013 31.3 6.2 119 158-285 70-199 (321)
336 PRK07677 short chain dehydroge 44.5 2.3E+02 0.005 25.7 10.0 53 169-227 3-59 (252)
337 PRK06079 enoyl-(acyl carrier p 44.4 2.4E+02 0.0052 25.8 10.2 33 167-199 7-42 (252)
338 PRK06125 short chain dehydroge 44.2 2.2E+02 0.0048 25.9 10.0 42 167-209 7-52 (259)
339 PLN03154 putative allyl alcoho 44.2 1.5E+02 0.0034 28.8 9.3 41 162-203 154-196 (348)
340 cd08285 NADP_ADH NADP(H)-depen 44.1 1.6E+02 0.0034 28.4 9.3 41 161-203 161-204 (351)
341 PF00106 adh_short: short chai 43.6 1.9E+02 0.0041 24.1 8.8 101 174-281 6-136 (167)
342 PRK05599 hypothetical protein; 43.5 1.4E+02 0.0031 27.3 8.5 35 175-209 7-44 (246)
343 cd08294 leukotriene_B4_DH_like 43.2 1.3E+02 0.0028 28.3 8.4 41 161-203 138-181 (329)
344 PRK06484 short chain dehydroge 42.8 2E+02 0.0044 29.4 10.3 37 166-203 268-306 (520)
345 PRK07890 short chain dehydroge 41.6 2.7E+02 0.0058 25.1 10.1 36 167-203 5-42 (258)
346 cd05285 sorbitol_DH Sorbitol d 41.4 1.4E+02 0.003 28.6 8.5 41 160-203 156-200 (343)
347 PRK10538 malonic semialdehyde 41.4 2.7E+02 0.0058 25.2 10.0 30 174-203 6-37 (248)
348 PRK12829 short chain dehydroge 41.4 2.7E+02 0.0059 25.1 10.4 42 161-203 5-48 (264)
349 PF05971 Methyltransf_10: Prot 41.3 26 0.00057 34.3 3.2 126 167-298 103-273 (299)
350 PF05050 Methyltransf_21: Meth 41.2 30 0.00066 29.1 3.4 36 172-207 1-42 (167)
351 PRK08265 short chain dehydroge 40.8 2.9E+02 0.0063 25.3 10.8 36 167-203 6-43 (261)
352 cd08238 sorbose_phosphate_red 40.5 1.3E+02 0.0027 30.2 8.2 42 162-203 171-216 (410)
353 PF02086 MethyltransfD12: D12 40.1 16 0.00035 33.8 1.6 36 166-203 20-55 (260)
354 PLN03209 translocon at the inn 40.1 2.6E+02 0.0057 30.0 10.7 66 163-229 76-149 (576)
355 cd08236 sugar_DH NAD(P)-depend 40.0 1.4E+02 0.003 28.5 8.1 43 161-203 154-197 (343)
356 cd08234 threonine_DH_like L-th 39.8 1.2E+02 0.0026 28.7 7.6 41 161-203 154-197 (334)
357 PRK06949 short chain dehydroge 39.8 2.9E+02 0.0062 24.9 10.1 56 166-227 8-67 (258)
358 PRK06482 short chain dehydroge 39.8 2.6E+02 0.0056 25.7 9.7 34 169-203 4-39 (276)
359 PRK12481 2-deoxy-D-gluconate 3 39.7 2.2E+02 0.0049 25.9 9.2 34 166-200 7-42 (251)
360 KOG2940|consensus 39.6 36 0.00077 32.6 3.7 103 157-278 62-173 (325)
361 PRK12744 short chain dehydroge 39.2 2.1E+02 0.0046 26.0 9.0 23 260-282 126-148 (257)
362 PRK05786 fabG 3-ketoacyl-(acyl 38.9 2.7E+02 0.006 24.7 9.5 36 167-203 5-42 (238)
363 PRK08085 gluconate 5-dehydroge 38.8 3E+02 0.0065 24.9 10.4 42 167-209 9-54 (254)
364 PF04378 RsmJ: Ribosomal RNA s 38.5 67 0.0015 30.6 5.5 100 173-298 62-179 (245)
365 PRK12937 short chain dehydroge 38.3 2.9E+02 0.0063 24.6 10.4 24 260-283 120-143 (245)
366 KOG1429|consensus 37.5 1E+02 0.0022 30.4 6.6 107 165-285 25-147 (350)
367 PRK07067 sorbitol dehydrogenas 37.4 3.2E+02 0.0068 24.8 10.2 36 167-203 6-43 (257)
368 PRK07454 short chain dehydroge 37.4 3E+02 0.0066 24.6 10.0 55 168-228 7-65 (241)
369 PRK07478 short chain dehydroge 36.7 3.2E+02 0.007 24.7 10.7 42 167-209 6-51 (254)
370 PRK07832 short chain dehydroge 36.6 3E+02 0.0064 25.4 9.6 30 174-203 6-37 (272)
371 PRK07889 enoyl-(acyl carrier p 36.1 3.5E+02 0.0075 24.8 10.1 35 166-200 6-43 (256)
372 PRK15182 Vi polysaccharide bio 36.0 84 0.0018 32.1 6.1 36 261-297 102-137 (425)
373 PRK09422 ethanol-active dehydr 35.7 2E+02 0.0043 27.3 8.4 42 160-203 156-200 (338)
374 PRK01747 mnmC bifunctional tRN 35.6 2.3E+02 0.0049 30.5 9.7 38 260-308 187-224 (662)
375 KOG1331|consensus 34.8 74 0.0016 31.1 5.1 94 165-282 44-146 (293)
376 PRK07806 short chain dehydroge 33.9 2.5E+02 0.0055 25.2 8.5 33 167-200 6-40 (248)
377 PRK06172 short chain dehydroge 33.5 3.6E+02 0.0078 24.3 10.0 56 167-228 7-66 (253)
378 PRK06505 enoyl-(acyl carrier p 33.1 4E+02 0.0088 24.7 10.0 34 167-200 7-43 (271)
379 cd08293 PTGR2 Prostaglandin re 33.0 2.8E+02 0.0061 26.4 9.0 41 163-203 149-193 (345)
380 PRK08213 gluconate 5-dehydroge 32.9 3.5E+02 0.0075 24.5 9.3 42 167-209 12-57 (259)
381 PRK13394 3-hydroxybutyrate deh 32.7 3.7E+02 0.0081 24.2 10.4 56 167-228 7-66 (262)
382 PRK06701 short chain dehydroge 32.6 4.2E+02 0.0091 24.9 10.1 21 260-280 162-182 (290)
383 PRK07109 short chain dehydroge 32.1 3.7E+02 0.008 26.1 9.8 56 167-228 8-67 (334)
384 PRK07985 oxidoreductase; Provi 31.9 4.4E+02 0.0096 24.8 10.2 20 260-279 166-185 (294)
385 PF05206 TRM13: Methyltransfer 31.8 1.1E+02 0.0023 29.4 5.7 46 164-209 16-67 (259)
386 PF10354 DUF2431: Domain of un 31.8 3.6E+02 0.0078 23.8 9.4 36 260-296 106-141 (166)
387 PRK06198 short chain dehydroge 31.4 3.9E+02 0.0085 24.1 10.4 36 167-203 6-44 (260)
388 PRK08267 short chain dehydroge 30.8 4.1E+02 0.0088 24.1 9.6 30 174-203 7-38 (260)
389 PF14542 Acetyltransf_CG: GCN5 30.8 42 0.0009 25.9 2.3 32 260-299 42-73 (78)
390 KOG3924|consensus 30.7 98 0.0021 31.7 5.4 124 158-296 184-329 (419)
391 PRK07370 enoyl-(acyl carrier p 30.7 2.3E+02 0.005 26.0 7.8 21 260-280 128-148 (258)
392 cd08298 CAD2 Cinnamyl alcohol 30.6 2.3E+02 0.0049 26.7 7.9 41 161-203 162-204 (329)
393 COG0863 DNA modification methy 30.2 71 0.0015 30.1 4.3 45 163-209 219-265 (302)
394 COG1062 AdhC Zn-dependent alco 30.0 88 0.0019 31.5 4.9 51 158-208 177-229 (366)
395 PRK08993 2-deoxy-D-gluconate 3 29.8 4.3E+02 0.0092 24.0 9.9 33 167-200 10-44 (253)
396 PF01234 NNMT_PNMT_TEMT: NNMT/ 29.7 32 0.0007 32.9 1.8 40 258-297 178-229 (256)
397 PRK08278 short chain dehydroge 29.6 4.6E+02 0.0099 24.2 10.0 34 167-201 6-41 (273)
398 PRK08945 putative oxoacyl-(acy 29.3 4.2E+02 0.0091 23.8 10.3 44 165-209 10-57 (247)
399 TIGR02818 adh_III_F_hyde S-(hy 29.2 1.1E+02 0.0024 30.0 5.5 40 162-203 181-223 (368)
400 PF13561 adh_short_C2: Enoyl-( 29.2 1.3E+02 0.0027 27.3 5.6 21 260-280 114-134 (241)
401 PRK05653 fabG 3-ketoacyl-(acyl 29.0 4E+02 0.0087 23.5 10.1 36 167-203 5-42 (246)
402 PF05430 Methyltransf_30: S-ad 29.0 1.2E+02 0.0027 25.6 5.1 39 260-309 71-109 (124)
403 PRK07792 fabG 3-ketoacyl-(acyl 28.4 5.2E+02 0.011 24.5 10.0 32 167-199 12-45 (306)
404 PRK06197 short chain dehydroge 28.3 4.6E+02 0.0099 24.7 9.6 37 166-203 15-53 (306)
405 PLN00015 protochlorophyllide r 28.1 5.2E+02 0.011 24.5 10.2 30 174-203 3-35 (308)
406 TIGR02632 RhaD_aldol-ADH rhamn 27.9 4.1E+02 0.009 28.8 10.1 36 167-203 414-451 (676)
407 COG0604 Qor NADPH:quinone redu 27.7 2.4E+02 0.0053 27.6 7.6 23 260-282 222-244 (326)
408 PRK08263 short chain dehydroge 27.6 4.9E+02 0.011 23.9 10.1 34 169-203 5-40 (275)
409 PRK07231 fabG 3-ketoacyl-(acyl 27.6 4.4E+02 0.0096 23.4 9.8 54 168-228 6-63 (251)
410 PRK08589 short chain dehydroge 27.4 4.9E+02 0.011 23.9 10.4 35 167-203 6-42 (272)
411 PF07091 FmrO: Ribosomal RNA m 27.2 71 0.0015 30.6 3.6 45 165-209 104-150 (251)
412 PRK06128 oxidoreductase; Provi 26.8 5.4E+02 0.012 24.2 10.3 19 260-278 172-190 (300)
413 KOG0821|consensus 26.4 1.3E+02 0.0028 28.7 5.0 41 162-203 46-86 (326)
414 PRK09072 short chain dehydroge 26.2 5E+02 0.011 23.6 9.4 36 167-203 5-42 (263)
415 PRK06139 short chain dehydroge 26.0 5.1E+02 0.011 25.2 9.5 42 167-209 7-52 (330)
416 PRK07326 short chain dehydroge 25.9 4.7E+02 0.01 23.1 10.3 42 167-209 6-51 (237)
417 PF11968 DUF3321: Putative met 25.9 1.6E+02 0.0034 27.7 5.5 38 260-297 125-171 (219)
418 PRK07097 gluconate 5-dehydroge 25.5 5.2E+02 0.011 23.6 10.3 42 167-209 10-55 (265)
419 PRK08415 enoyl-(acyl carrier p 25.5 5.6E+02 0.012 23.9 10.3 21 260-280 124-144 (274)
420 PRK07814 short chain dehydroge 25.3 5.2E+02 0.011 23.5 10.4 43 166-209 9-55 (263)
421 cd08245 CAD Cinnamyl alcohol d 25.2 3.6E+02 0.0079 25.3 8.2 39 162-203 158-199 (330)
422 PRK07984 enoyl-(acyl carrier p 25.0 5.6E+02 0.012 23.7 10.0 21 260-280 126-146 (262)
423 PRK08628 short chain dehydroge 25.0 5.1E+02 0.011 23.3 10.5 36 167-203 7-44 (258)
424 PLN02702 L-idonate 5-dehydroge 25.0 3.8E+02 0.0082 25.9 8.5 40 162-203 177-219 (364)
425 PRK06500 short chain dehydroge 24.9 5E+02 0.011 23.1 10.6 33 171-203 9-43 (249)
426 PRK05854 short chain dehydroge 24.9 4.3E+02 0.0094 25.2 8.7 36 167-203 14-51 (313)
427 PRK07074 short chain dehydroge 24.8 5.2E+02 0.011 23.3 9.8 31 173-203 7-39 (257)
428 TIGR01289 LPOR light-dependent 24.7 5.9E+02 0.013 24.3 9.7 34 169-203 5-41 (314)
429 PRK05855 short chain dehydroge 24.4 5.3E+02 0.011 26.3 9.8 56 167-228 315-374 (582)
430 cd05188 MDR Medium chain reduc 24.3 1.7E+02 0.0036 26.3 5.5 39 164-203 132-171 (271)
431 cd05281 TDH Threonine dehydrog 24.2 3.4E+02 0.0074 25.9 7.9 39 163-203 160-201 (341)
432 PRK06940 short chain dehydroge 24.0 5.5E+02 0.012 23.8 9.1 26 178-203 11-37 (275)
433 cd08233 butanediol_DH_like (2R 23.9 2.7E+02 0.0059 26.7 7.2 41 161-203 167-210 (351)
434 PRK06914 short chain dehydroge 23.8 5.7E+02 0.012 23.4 10.0 31 173-203 8-40 (280)
435 PF06859 Bin3: Bicoid-interact 23.6 45 0.00098 27.9 1.4 18 260-277 25-42 (110)
436 cd08296 CAD_like Cinnamyl alco 23.3 2.9E+02 0.0062 26.3 7.2 40 161-203 158-200 (333)
437 PRK07831 short chain dehydroge 23.3 5.7E+02 0.012 23.2 10.6 60 166-228 16-79 (262)
438 TIGR01963 PHB_DH 3-hydroxybuty 23.0 5.4E+02 0.012 22.9 9.5 30 174-203 7-38 (255)
439 KOG2920|consensus 22.9 71 0.0015 31.1 2.8 37 166-203 116-152 (282)
440 PRK11630 hypothetical protein; 22.6 1.1E+02 0.0024 28.1 3.9 38 260-297 15-56 (206)
441 PRK05717 oxidoreductase; Valid 21.4 6.1E+02 0.013 22.9 10.5 36 167-203 10-47 (255)
442 PRK06603 enoyl-(acyl carrier p 21.4 6.4E+02 0.014 23.1 10.2 21 260-280 127-147 (260)
443 PF05711 TylF: Macrocin-O-meth 21.3 3E+02 0.0064 26.2 6.6 118 166-298 75-229 (248)
444 TIGR02415 23BDH acetoin reduct 21.2 6E+02 0.013 22.7 9.5 30 174-203 6-37 (254)
445 PRK06124 gluconate 5-dehydroge 21.2 6.1E+02 0.013 22.8 10.6 43 166-209 10-56 (256)
446 PRK05396 tdh L-threonine 3-deh 20.9 3.1E+02 0.0067 26.1 6.9 39 165-203 162-201 (341)
447 PRK07904 short chain dehydroge 20.9 6.5E+02 0.014 23.0 9.2 57 166-227 7-69 (253)
448 PRK07666 fabG 3-ketoacyl-(acyl 20.8 6E+02 0.013 22.6 9.2 36 167-203 7-44 (239)
449 PRK12748 3-ketoacyl-(acyl-carr 20.8 6.3E+02 0.014 22.8 10.7 33 167-199 5-40 (256)
450 PRK06101 short chain dehydroge 20.7 6.2E+02 0.013 22.7 9.9 31 173-203 6-38 (240)
451 PF10237 N6-adenineMlase: Prob 20.7 4.1E+02 0.0088 23.6 6.9 121 148-295 5-135 (162)
452 PRK10634 tRNA(ANN) t(6)A37 thr 20.7 1.3E+02 0.0029 27.1 4.0 38 260-297 8-49 (190)
453 PRK07825 short chain dehydroge 20.5 6.6E+02 0.014 22.9 10.6 36 167-203 5-42 (273)
454 PF02636 Methyltransf_28: Puta 20.3 1.9E+02 0.0042 26.9 5.1 43 167-209 19-71 (252)
455 cd08231 MDR_TM0436_like Hypoth 20.2 4.8E+02 0.01 25.1 8.1 37 165-203 176-215 (361)
456 PLN02586 probable cinnamyl alc 20.1 4.4E+02 0.0096 25.7 7.9 37 164-203 181-220 (360)
No 1
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-50 Score=398.58 Aligned_cols=250 Identities=28% Similarity=0.352 Sum_probs=193.4
Q ss_pred CCCcceecccCCCChhhhhhh-ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEec
Q psy7769 74 GLHDFIPATQLKGMEGFITDA-DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMD 152 (355)
Q Consensus 74 ~l~~~~rvn~lk~~~~~i~e~-~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD 152 (355)
.++.++|+|++|...+.+.+. ....... . ..+..+..+.+ ...+.+...|.|+.|. ||+||
T Consensus 81 ~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~---------~--~~~~~~~~~~i--~~~~~~~~~~~~~~G~-----~~vQd 142 (355)
T COG0144 81 PPPRSLRVNTLKADVEELLEALEEAGVLD---------E--KPWVLDEVLRI--EASGPIGRLPEFAEGL-----IYVQD 142 (355)
T ss_pred CCCeeEEEcCccCCHHHHHHHHhhccccc---------c--cCCccccEEEe--cCCCCcccChhhhceE-----EEEcC
Confidence 377899999999998887764 1111110 0 11123333443 2445777788889887 99999
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-Cc-EEEEcCCchhh--HHhhccccccccCcceEEEEEec--
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DY-YCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG-- 226 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~-V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D-- 226 (355)
++||+++.+|+|+||++||||||||||||+|||+++.+ |. |+|+|++++|+ +++|++| +|..|+.+++.|
T Consensus 143 ~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R----lG~~nv~~~~~d~~ 218 (355)
T COG0144 143 EASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR----LGVRNVIVVNKDAR 218 (355)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH----cCCCceEEEecccc
Confidence 99999999999999999999999999999999998854 44 59999999999 9999995 577776665544
Q ss_pred -------------ceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCH
Q psy7769 227 -------------GSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQND 288 (355)
Q Consensus 227 -------------a~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE 288 (355)
..+|||||||+| +.+++ ++ |+++++.+++.+| +||.+|+++|||||+|||||||++++|||
T Consensus 219 ~~~~~~~~~~~fD~iLlDaPCSg~G-~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE 297 (355)
T COG0144 219 RLAELLPGGEKFDRILLDAPCSGTG-VIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE 297 (355)
T ss_pred cccccccccCcCcEEEECCCCCCCc-ccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH
Confidence 445999999999 77777 55 6789999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEcC
Q psy7769 289 GVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355 (355)
Q Consensus 289 ~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~~ 355 (355)
+||++||+++ .+++++..... +... +.......+++.+++||.| +++|||+|+|+|.+
T Consensus 298 ~vV~~~L~~~---~~~~~~~~~~~--~~~~---~~~~~~~~~~~~r~~p~~~-~~dGFFia~l~k~~ 355 (355)
T COG0144 298 EVVERFLERH---PDFELEPVRLP--WGPL---FEGLGSELGKTRRLYPHVH-GTDGFFIAKLRKKR 355 (355)
T ss_pred HHHHHHHHhC---CCceeeccccc--cccc---ccccccccCCeEEECCCCC-CCCCeEEEEEEeCC
Confidence 9999999986 33333333222 1111 0110012367899999998 77899999999974
No 2
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=5.1e-49 Score=377.46 Aligned_cols=247 Identities=27% Similarity=0.319 Sum_probs=193.2
Q ss_pred CCCcceecccCCCChhhhhhh-ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEec
Q psy7769 74 GLHDFIPATQLKGMEGFITDA-DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMD 152 (355)
Q Consensus 74 ~l~~~~rvn~lk~~~~~i~e~-~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD 152 (355)
..+.++|+|++|..++.+.+. +.. .+.+ +.....|+.+.+.....+++..+|.|+.|. +|+||
T Consensus 8 ~~~~~iRvN~~k~~~~~~~~~L~~~-------g~~~----~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~-----~~vQd 71 (283)
T PF01189_consen 8 PPPVTIRVNTLKISREELLEELEEE-------GIQL----EPIPRSPDALRVIGKSPYSICSLPEFKNGL-----FYVQD 71 (283)
T ss_dssp --GEEEEE-TTTSSHHHHHHHHHHT-------THEE----EEETSTTCEEEEEEECSSCGGGSHHHHTTS-----EEEHH
T ss_pred CCCeEEEECcCcCCHHHHHHHHhhc-------ccce----EEcccccchhccccccccchhhchhhhCCc-----EEecc
Confidence 367899999999998877754 111 1111 122345666444444567888999999997 99999
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec---
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG--- 226 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D--- 226 (355)
++|++++.+|+|++|+.||||||||||||+|+|+++. +|.|+|+|++..|+ ++.|++| .|..++.++..|
T Consensus 72 ~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r----~g~~~v~~~~~D~~~ 147 (283)
T PF01189_consen 72 ESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR----LGVFNVIVINADARK 147 (283)
T ss_dssp HHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH----TT-SSEEEEESHHHH
T ss_pred cccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh----cCCceEEEEeecccc
Confidence 9999999999999999999999999999999999885 69999999999999 9999994 577778777544
Q ss_pred -----------ceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhc----cCCcEEEEEeCCCCCCC
Q psy7769 227 -----------GSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLV----KVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 227 -----------a~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~L----kpGG~lVYsTCSl~~~E 286 (355)
...+||||||+| +.+++ ++ |+++++..++.+| +||++|++++ ||||+|||||||++++|
T Consensus 148 ~~~~~~~~~fd~VlvDaPCSg~G-~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 148 LDPKKPESKFDRVLVDAPCSGLG-TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp HHHHHHTTTEEEEEEECSCCCGG-GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred ccccccccccchhhcCCCccchh-hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 345999999999 55555 55 5688999999999 9999999999 99999999999999999
Q ss_pred CHHHHHHHHHhhhhccCceEEEeccc--ccccccccccccccCCCccEEEEecCCCCCCCceEEEEEE
Q psy7769 287 NDGVVHMSLKRIWEETGCEIEIKDLS--QALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352 (355)
Q Consensus 287 NE~vV~~~L~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~ 352 (355)
||+||++||++++ + ++++++. ....++.. + +. ...+.+++||.+ +++|||+|+||
T Consensus 227 NE~vV~~fl~~~~---~--~~l~~~~~~~~~~~~~~---~-~~-~~~~~r~~P~~~-~~dGFFiA~lr 283 (283)
T PF01189_consen 227 NEEVVEKFLKRHP---D--FELVPIPLPEPPPGFKS---Y-PI-GEGCLRILPHRH-GTDGFFIAKLR 283 (283)
T ss_dssp THHHHHHHHHHST---S--EEEECCESSTCEEESSG---G-CT-GGGSEEESTTTS-SSSSEEEEEEE
T ss_pred HHHHHHHHHHhCC---C--cEEEecccccccccccc---c-cC-CCCEEEeCCCCC-CCCCEEEEEeC
Confidence 9999999999862 3 4444443 22211111 1 12 267899999998 78999999997
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=7.8e-48 Score=390.87 Aligned_cols=250 Identities=21% Similarity=0.189 Sum_probs=191.7
Q ss_pred CCcceecccCCCChhhhhhhccccccCCCCCcceeeCCCcCCCCCccceeEec--CCCCcccCCCCCCCCcceeeEEEec
Q psy7769 75 LHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSF--PSGDISEFPSPKRGVTGVFNYYCMD 152 (355)
Q Consensus 75 l~~~~rvn~lk~~~~~i~e~~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~--~~~~~~~~p~~~~g~~~~~~~~~QD 152 (355)
.+.++|||++|...+-+.+. +. ..++.+ ++.++.|..+.+... ....+...|.+..|. ||+||
T Consensus 33 ~~~~lRvN~lK~~~~~~~~~-----L~-~~g~~~----~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~G~-----~yvQd 97 (470)
T PRK11933 33 LRRSIRVNTLKISVADFLQL-----MA-PYGWTL----TPIPWCEEGFWIERDDEDALPLGNTAEHLSGL-----FYIQE 97 (470)
T ss_pred CCeEEEEcCCcCCHHHHHHH-----HH-hCCCce----eECCCCCceEEEecCccccCCcccChHHHCCc-----EEEEC
Confidence 67899999999887755542 10 011111 234556666554211 012366778888886 99999
Q ss_pred hhcHHHHHhh--CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 153 GASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 153 ~aS~l~~~~L--~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
+|||+++.+| +++||++||||||||||||+|||++++ .|.|+|+|++++|+ +++|++| .|+.|+.+++.|+
T Consensus 98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r----~G~~nv~v~~~D~ 173 (470)
T PRK11933 98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR----CGVSNVALTHFDG 173 (470)
T ss_pred HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCeEEEEeCch
Confidence 9999999999 899999999999999999999999874 59999999999999 9999994 5777887776664
Q ss_pred -------------eeeecccCCCCCccCCc--c--ccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHH
Q psy7769 228 -------------SVVYSTCSLSPIQNDGV--V--HMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDG 289 (355)
Q Consensus 228 -------------~~lDaPCSgsG~t~~~~--l--~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~ 289 (355)
..|||||||+| +.+++ + .|+++++..++.+| +||.+|+++|||||+|||||||++++|||+
T Consensus 174 ~~~~~~~~~~fD~ILvDaPCSG~G-~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~ 252 (470)
T PRK11933 174 RVFGAALPETFDAILLDAPCSGEG-TVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQA 252 (470)
T ss_pred hhhhhhchhhcCeEEEcCCCCCCc-ccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHH
Confidence 34999999999 56666 3 48999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 290 VVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 290 vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
||++||++++ + .+++.++...+.+... ... ...+.|++||.+ +++|||+|+|+|.
T Consensus 253 vV~~~L~~~~---~-~~~~~~~~~~~~~~~~----~~~-~~~~~r~~P~~~-~~dGfFiA~lrk~ 307 (470)
T PRK11933 253 VCLWLKETYP---D-AVEFEPLGDLFPGAEK----ALT-EEGFLHVFPQIY-DSEGFFVARLRKT 307 (470)
T ss_pred HHHHHHHHCC---C-cEEecccccccccccc----ccC-CCCeEEECCCCC-CCcceeeEEEEec
Confidence 9999999863 1 1333433221111110 001 133578999997 6789999999985
No 4
>KOG1122|consensus
Probab=100.00 E-value=2e-46 Score=366.33 Aligned_cols=220 Identities=26% Similarity=0.347 Sum_probs=177.7
Q ss_pred ccceeEecCCCCcccCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcC
Q psy7769 120 PYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGA 198 (355)
Q Consensus 120 ~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~ 198 (355)
-.+.++. ....+..+|.+..|. |.+|+++|.+++++|+||||++||||||||||||+|||.++ ++|.|+|+|.
T Consensus 201 vgl~v~~-s~vpigat~e~lag~-----~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~ 274 (460)
T KOG1122|consen 201 VGLVVFD-SVVPIGATPEYLAGH-----YMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDS 274 (460)
T ss_pred ceEEEec-CccccCCchhhcccc-----eeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEeccc
Confidence 3455542 233455677777775 88999999999999999999999999999999999999987 5699999999
Q ss_pred Cchhh--HHhhccccccccCcceEEEEEecce--------------eeecccCCCCCccCCc-cccc--hHHHHhhhhHH
Q psy7769 199 SLLPV--LALNIRPYDTVLDIHALKLVKVGGS--------------VVYSTCSLSPIQNDGV-VHMS--LKRIWEETGCE 259 (355)
Q Consensus 199 s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~--------------~lDaPCSgsG~t~~~~-l~~~--~~~l~~l~~lQ 259 (355)
+..|+ +..|+.| +|+.|..+++.|+. ++||||||+|+.++.. ++|. ...+.++..+|
T Consensus 275 n~~r~~~l~~n~~r----lGv~ntiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQ 350 (460)
T KOG1122|consen 275 NENRLKSLKANLHR----LGVTNTIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQ 350 (460)
T ss_pred chHHHHHHHHHHHH----hCCCceEEEccCcccccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHH
Confidence 99999 9999994 57777777777763 3999999999766666 7754 46788999999
Q ss_pred -HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecC
Q psy7769 260 -IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPH 338 (355)
Q Consensus 260 -~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~ 338 (355)
+||.+|..++++||+|||||||+.++|||+||+++|.+++ ..++.+..+..+.++.-....|+++. +...|++||
T Consensus 351 r~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p---~~kL~p~~~~iG~~G~~~~~~~~psl-~~~~r~yPh 426 (460)
T KOG1122|consen 351 RELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP---EVKLVPTGLDIGGEGRFRGGRFHPSL-KLTRRFYPH 426 (460)
T ss_pred HHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCC---ceEeccccccCCCCCcccCcccCcch-hheeeecCc
Confidence 9999999999999999999999999999999999999873 33333333333333311223566664 677889999
Q ss_pred CCCCCCceEEEEEEEc
Q psy7769 339 LPSNFGPMYFCKFDKI 354 (355)
Q Consensus 339 ~~~~~~gfFia~l~r~ 354 (355)
.| +++|||+|||+|.
T Consensus 427 ~h-nmdgffvaKl~k~ 441 (460)
T KOG1122|consen 427 VH-NMDGFFVAKLKKA 441 (460)
T ss_pred cc-CCchHHHHHHHhh
Confidence 98 9999999999874
No 5
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=1.5e-43 Score=336.25 Aligned_cols=243 Identities=23% Similarity=0.260 Sum_probs=181.7
Q ss_pred eecccCCCChhhhhhh-ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEechhcHH
Q psy7769 79 IPATQLKGMEGFITDA-DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLL 157 (355)
Q Consensus 79 ~rvn~lk~~~~~i~e~-~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~aS~l 157 (355)
+|||++|...+.+.+. +..+ +.+. +. ..|..+.+. .....+...|.++.|. +|+||++|++
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~---------~~~~--~~-~~~~~~~~~-~~~~~~~~~~~~~~G~-----~~~qd~~s~~ 62 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRG---------VTLI--PW-CEEGFFEVN-ESPLPIGSTPEYLSGL-----YYIQEASSMI 62 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCC---------Ccee--ec-CCCceEEEe-CCCCCcccChhHhCCe-----EEEECHHHHH
Confidence 5899999988876553 1111 1111 11 133333332 1223477888888886 9999999999
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec--------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG-------- 226 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D-------- 226 (355)
++.+|++++|++|||+|||||+||+++++.++ .|.|+|+|+++.|+ +++|+++ .+..++.++..|
T Consensus 63 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~----~g~~~v~~~~~D~~~~~~~~ 138 (264)
T TIGR00446 63 PPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR----CGVLNVAVTNFDGRVFGAAV 138 (264)
T ss_pred HHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH----cCCCcEEEecCCHHHhhhhc
Confidence 99999999999999999999999999998774 48999999999999 9999984 355567666555
Q ss_pred ----ceeeecccCCCCCccCCc--c--ccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 227 ----GSVVYSTCSLSPIQNDGV--V--HMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 227 ----a~~lDaPCSgsG~t~~~~--l--~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
...+||||||+| +.+++ + .|+++.+..++.+| ++|++|+++|||||+|||||||++++|||.||++||++
T Consensus 139 ~~fD~Vl~D~Pcsg~G-~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 139 PKFDAILLDAPCSGEG-VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred cCCCEEEEcCCCCCCc-ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 344999999999 55555 4 37889999999999 99999999999999999999999999999999999998
Q ss_pred hhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEE
Q psy7769 298 IWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDK 353 (355)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r 353 (355)
++ +..+.+ .... ... ..+. .......+.|++||.| +++|||+|+|+|
T Consensus 218 ~~---~~~~~~-~~~~--~~~-~~~~-~~~~~~~~~r~~P~~~-~~dGfF~a~l~k 264 (264)
T TIGR00446 218 RP---DVVEEL-PKGD--EFF-GANK-GKEEVKGALRVFPQIY-DCEGFFVAKLRK 264 (264)
T ss_pred CC---CcEEec-cCCc--ccc-cccc-cccccCCeEEECCCCC-CCCcEEEEEEEC
Confidence 63 222221 1111 000 0000 0001145789999998 789999999986
No 6
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=8.3e-42 Score=344.93 Aligned_cols=249 Identities=18% Similarity=0.256 Sum_probs=191.0
Q ss_pred CCCChhhhhhh--ccc---------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCcc
Q psy7769 84 LKGMEGFITDA--DYM---------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDIS 133 (355)
Q Consensus 84 lk~~~~~i~e~--~~~---------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~ 133 (355)
..+.|+|+.+. +.| .+++.++++++|||+- +.+++|..+.+. ...+.+.
T Consensus 131 ~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 209 (431)
T PRK14903 131 KYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVR-KLGVNMN 209 (431)
T ss_pred hhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEc-CCCCCcc
Confidence 45778888775 333 3578889999999861 123456555442 1134567
Q ss_pred cCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccc
Q psy7769 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRP 210 (355)
Q Consensus 134 ~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r 210 (355)
..+.++.|. +++||.+|++++.++++++|++|||+|||||+||+++++.+ +.|.|+|+|+++.|+ +++|+++
T Consensus 210 ~~~~~~~G~-----~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 210 DSRVIKDGL-----ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred cChHHHCCe-----EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 778888886 99999999999999999999999999999999999999987 458999999999999 9999984
Q ss_pred cccccCcceEEEEEecc-------------eeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCC
Q psy7769 211 YDTVLDIHALKLVKVGG-------------SVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVG 272 (355)
Q Consensus 211 ~~~~~g~~~v~~~~~Da-------------~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpG 272 (355)
.|..++.++..|+ ..+||||||+| +.+++ ++ |+++++..+..+| ++|.+++++||||
T Consensus 285 ----~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G-~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 285 ----LKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLG-TARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred ----cCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCc-cccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3555666665554 44999999999 55555 44 6788899999999 9999999999999
Q ss_pred cEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEE
Q psy7769 273 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352 (355)
Q Consensus 273 G~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~ 352 (355)
|+|||||||++++|||+||++||++++ + +++.++......+... .+ . ...|++++|+. +++|||+|+|+
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~---~--~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~P~~--~~dGFf~a~L~ 428 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQK---D--AEVIDIRDKLEEFEVE-GI--W-DGYGFLMLPDE--TLTPFYVSVLR 428 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCC---C--cEEecccccccccccc-cc--c-CCCcEEECcCC--CCCcEEEEEEE
Confidence 999999999999999999999998763 3 3444432111110000 00 0 13468999985 67899999999
Q ss_pred Ec
Q psy7769 353 KI 354 (355)
Q Consensus 353 r~ 354 (355)
|.
T Consensus 429 k~ 430 (431)
T PRK14903 429 KM 430 (431)
T ss_pred eC
Confidence 86
No 7
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=2.8e-41 Score=340.62 Aligned_cols=242 Identities=17% Similarity=0.176 Sum_probs=188.6
Q ss_pred CCCChhhhhhh--ccc--------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCccc
Q psy7769 84 LKGMEGFITDA--DYM--------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDISE 134 (355)
Q Consensus 84 lk~~~~~i~e~--~~~--------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~~ 134 (355)
..+.|+|+.+. ..| .+++.++++++|||+- +..++|..+.+. ....+..
T Consensus 134 ~~s~P~wl~~~~~~~~~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~ 211 (426)
T TIGR00563 134 RYLHPEWLVKRLQKAYPGQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLE--TPAAVHA 211 (426)
T ss_pred HcCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEEC--CCCCccc
Confidence 46789998874 222 3568889999999862 112456555542 3335778
Q ss_pred CCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc
Q psy7769 135 FPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD 212 (355)
Q Consensus 135 ~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~ 212 (355)
.+.++.|. |++||++|++++..|++++|++|||+|||||+||+++++.++.|+|+|+|+++.|+ +++|++++
T Consensus 212 ~~~~~~G~-----~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~- 285 (426)
T TIGR00563 212 LPGFEEGW-----VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL- 285 (426)
T ss_pred CchhhCCe-----EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-
Confidence 88888886 99999999999999999999999999999999999999987678999999999999 89999843
Q ss_pred cccCcc-eEEEEE--------------ecceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCC
Q psy7769 213 TVLDIH-ALKLVK--------------VGGSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVG 272 (355)
Q Consensus 213 ~~~g~~-~v~~~~--------------~Da~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpG 272 (355)
|.. .+.+.. +|...+||||||+| +.+++ ++ |+++++.+++.+| ++|.+|+++||||
T Consensus 286 ---g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G-~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 286 ---GLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATG-VIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred ---CCCeEEEEeccccccccccccccccCEEEEcCCCCCCc-ccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 332 222222 45556999999999 55554 55 5788899999999 9999999999999
Q ss_pred cEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEE
Q psy7769 273 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352 (355)
Q Consensus 273 G~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~ 352 (355)
|+|||||||++++|||.||++||++++ ++.++ .. +. .+.....+++++|+.+ +++|||+|+|+
T Consensus 362 G~lvystcs~~~~Ene~~v~~~l~~~~---~~~~~--~~-----~~------~~~~~~~~~~~~P~~~-~~dGff~a~l~ 424 (426)
T TIGR00563 362 GTLVYATCSVLPEENSEQIKAFLQEHP---DFPFE--KT-----GT------PEQVRDGGLQILPHAE-EGDGFFYAKLI 424 (426)
T ss_pred cEEEEEeCCCChhhCHHHHHHHHHhCC---CCeec--cC-----CC------ccccCCCcEEECCCCC-CCCCeEEEEEE
Confidence 999999999999999999999999863 32221 11 10 0111134688999997 78999999999
Q ss_pred Ec
Q psy7769 353 KI 354 (355)
Q Consensus 353 r~ 354 (355)
|.
T Consensus 425 k~ 426 (426)
T TIGR00563 425 KK 426 (426)
T ss_pred eC
Confidence 84
No 8
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.2e-41 Score=342.18 Aligned_cols=233 Identities=20% Similarity=0.329 Sum_probs=188.9
Q ss_pred CCChhhhhhh--ccc---------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCccc
Q psy7769 85 KGMEGFITDA--DYM---------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDISE 134 (355)
Q Consensus 85 k~~~~~i~e~--~~~---------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~~ 134 (355)
.+.|+|+.+. ..| .+++.++++++|+|+- ..+++|..+.+. ...+++..
T Consensus 147 ~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 225 (434)
T PRK14901 147 HSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLT-GNPGSIRQ 225 (434)
T ss_pred hCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEec-CCCCcccc
Confidence 4789998876 333 3678899999999861 124567777663 22245788
Q ss_pred CCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcccc
Q psy7769 135 FPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPY 211 (355)
Q Consensus 135 ~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~ 211 (355)
.|.|+.|. +++||++|++++.+|++++|++|||+|||||+||+++++.++ .|+|+|+|+++.|+ +++|+++
T Consensus 226 ~~~f~~g~-----~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r- 299 (434)
T PRK14901 226 LPGYEEGW-----WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR- 299 (434)
T ss_pred ChHHhCCe-----EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH-
Confidence 88898886 999999999999999999999999999999999999998764 58999999999999 9999984
Q ss_pred ccccCcceEEEEEec----------------ceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhcc
Q psy7769 212 DTVLDIHALKLVKVG----------------GSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVK 270 (355)
Q Consensus 212 ~~~~g~~~v~~~~~D----------------a~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~Lk 270 (355)
.|..++.+++.| ...+|+||||+| +.+++ ++ +++.++..+..+| ++|.+|+++||
T Consensus 300 ---~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G-~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk 375 (434)
T PRK14901 300 ---LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLG-TLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK 375 (434)
T ss_pred ---cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCccc-ccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466566665544 344999999999 55555 55 4678899999999 99999999999
Q ss_pred CCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEE
Q psy7769 271 VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCK 350 (355)
Q Consensus 271 pGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~ 350 (355)
|||+|||||||++++|||.||.+||++++ + +++... +.+++||.| +++|||+|+
T Consensus 376 pgG~lvystcsi~~~Ene~~v~~~l~~~~---~--~~~~~~--------------------~~~~~P~~~-~~dGfF~a~ 429 (434)
T PRK14901 376 PGGTLVYATCTLHPAENEAQIEQFLARHP---D--WKLEPP--------------------KQKIWPHRQ-DGDGFFMAV 429 (434)
T ss_pred CCCEEEEEeCCCChhhHHHHHHHHHHhCC---C--cEecCC--------------------CCccCCCCC-CCCcEEEEE
Confidence 99999999999999999999999999762 2 322110 112899997 789999999
Q ss_pred EEEc
Q psy7769 351 FDKI 354 (355)
Q Consensus 351 l~r~ 354 (355)
|+|.
T Consensus 430 l~k~ 433 (434)
T PRK14901 430 LRKK 433 (434)
T ss_pred EEeC
Confidence 9986
No 9
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.4e-38 Score=321.28 Aligned_cols=237 Identities=17% Similarity=0.200 Sum_probs=185.8
Q ss_pred CCChhhhhhh--ccc--------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCcccC
Q psy7769 85 KGMEGFITDA--DYM--------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDISEF 135 (355)
Q Consensus 85 k~~~~~i~e~--~~~--------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~~~ 135 (355)
.+.|+|+.+. +.| .+++.++++++|+|+- +.+++|..+.+. ....+...
T Consensus 141 ~s~P~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 218 (427)
T PRK10901 141 YNHPSWLIKRLKKAYPEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIRLE--TPVPVHQL 218 (427)
T ss_pred hcCCHHHHHHHHHHhHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEEEC--CCCCcccC
Confidence 5678887765 222 3678888888888861 123566666552 22357777
Q ss_pred CCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc
Q psy7769 136 PSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT 213 (355)
Q Consensus 136 p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~ 213 (355)
+.++.|. +++||.+|++++.+|++++|++|||+|||||+||+++++.+..++|+|+|+++.|+ +++|++++
T Consensus 219 ~~~~~G~-----~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-- 291 (427)
T PRK10901 219 PGFAEGW-----VSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-- 291 (427)
T ss_pred chhhCce-----EEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--
Confidence 8888886 99999999999999999999999999999999999999987558999999999999 88898842
Q ss_pred ccCcceEEEEEe--------------cceeeecccCCCCCccCCc--ccc--chHHHHhhhhHH-HHHHHHHhhccCCcE
Q psy7769 214 VLDIHALKLVKV--------------GGSVVYSTCSLSPIQNDGV--VHM--SLKRIWEETGCE-IEIKHALKLVKVGGS 274 (355)
Q Consensus 214 ~~g~~~v~~~~~--------------Da~~lDaPCSgsG~t~~~~--l~~--~~~~l~~l~~lQ-~lL~~A~~~LkpGG~ 274 (355)
|.. +.++.+ |...+|+||||+|+ .+++ ++| ++.++.++..+| ++|.+|+++|||||+
T Consensus 292 --g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~-~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~ 367 (427)
T PRK10901 292 --GLK-ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGV-IRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGT 367 (427)
T ss_pred --CCC-eEEEEcCcccchhhcccCCCCEEEECCCCCcccc-cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 332 334433 44459999999994 4444 655 577888899999 999999999999999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 275 VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 275 lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
+||||||++++|||++|.++|++++ + +++++.. . .. ..|.+++||.| +++|||+|+|+|.
T Consensus 368 lvystcs~~~~Ene~~v~~~l~~~~---~--~~~~~~~-----~--------~~-~~~~~~~P~~~-~~dGff~a~l~k~ 427 (427)
T PRK10901 368 LLYATCSILPEENEQQIKAFLARHP---D--AELLDTG-----T--------PQ-QPGRQLLPGEE-DGDGFFYALLIKR 427 (427)
T ss_pred EEEEeCCCChhhCHHHHHHHHHhCC---C--CEEecCC-----C--------CC-CCceEECCCCC-CCCCeEEEEEEEC
Confidence 9999999999999999999998752 3 3333320 0 11 45789999997 7899999999984
No 10
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.9e-38 Score=321.77 Aligned_cols=246 Identities=21% Similarity=0.274 Sum_probs=183.7
Q ss_pred CCChhhhhhh--ccc---------cccCCCCCcceeeCCCc--------------CC----CCCccceeEecCCCCcccC
Q psy7769 85 KGMEGFITDA--DYM---------DYYRPSPEVDFKVVPET--------------EL----HISPYLQAFSFPSGDISEF 135 (355)
Q Consensus 85 k~~~~~i~e~--~~~---------~~~~~~~~~~~~v~~~~--------------~~----~~p~~l~~~~~~~~~~~~~ 135 (355)
.+.|+|+.+. ..| ..++.++++++|+|+-. .. .+| .+.+ . +....+
T Consensus 149 ~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~---~-~~~~~~ 223 (445)
T PRK14904 149 YSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGLP-NFFL---S-KDFSLF 223 (445)
T ss_pred hCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCcc-eEEE---e-cccccc
Confidence 5788998775 333 35677888889988611 00 111 1111 1 123334
Q ss_pred -CCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcccc
Q psy7769 136 -PSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPY 211 (355)
Q Consensus 136 -p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~ 211 (355)
|.+..|. +++||++|++++.+|++.+|++|||+|||||+||+++++.++ .++|+|+|+++.|+ +++|+++
T Consensus 224 ~~~~~~G~-----~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~- 297 (445)
T PRK14904 224 EPFLKLGL-----VSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA- 297 (445)
T ss_pred ChHHhCcE-----EEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-
Confidence 6677775 899999999999999999999999999999999999998764 48999999999999 8899983
Q ss_pred ccccCcceEEEEEecc-----------eeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCCcEE
Q psy7769 212 DTVLDIHALKLVKVGG-----------SVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVGGSV 275 (355)
Q Consensus 212 ~~~~g~~~v~~~~~Da-----------~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~l 275 (355)
.|..++.++..|+ ..+|+||||+| +.+++ ++ |+++.+.++..+| ++|.+++++|||||+|
T Consensus 298 ---~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pcsg~g-~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~l 373 (445)
T PRK14904 298 ---LGITIIETIEGDARSFSPEEQPDAILLDAPCTGTG-VLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVL 373 (445)
T ss_pred ---hCCCeEEEEeCcccccccCCCCCEEEEcCCCCCcc-hhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 4556677766554 44999999999 55555 54 5678899999999 9999999999999999
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 276 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 276 VYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
||+|||++++|||+||++||++++ + +...+....++ ..+...... ..+.+++|+.+.++||||+|+|+|.
T Consensus 374 vystcs~~~~Ene~~v~~~l~~~~---~--~~~~~~~~~l~---~~~~~~~~~-~~~~~~~P~~~~~~dGfF~a~l~k~ 443 (445)
T PRK14904 374 VYATCSIEPEENELQIEAFLQRHP---E--FSAEPSPGSLP---EPFHEVAHP-KGAILTLPGEHEGFDGGFAQRLRKN 443 (445)
T ss_pred EEEeCCCChhhHHHHHHHHHHhCC---C--CEEeccccccc---cccccccCC-CCcEEECCCCCCCCCcEEEEEEEec
Confidence 999999999999999999999763 2 33333221111 111100111 2357899998767899999999986
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.6e-38 Score=319.58 Aligned_cols=247 Identities=20% Similarity=0.213 Sum_probs=193.0
Q ss_pred CCCChhhhhhh--ccc---------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCcc
Q psy7769 84 LKGMEGFITDA--DYM---------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDIS 133 (355)
Q Consensus 84 lk~~~~~i~e~--~~~---------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~ 133 (355)
..+.|+|+.+. ..| .+++.++++++|+|+. +.+++|..+.+. .+++.
T Consensus 146 ~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~~~~~ 222 (444)
T PRK14902 146 KYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIE---KGNIA 222 (444)
T ss_pred HhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEe---CCCcc
Confidence 45789998775 223 3678888999999862 123566666552 35688
Q ss_pred cCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccc
Q psy7769 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRP 210 (355)
Q Consensus 134 ~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r 210 (355)
..+.++.|. +++||.+|++++.++++++|++|||+|||||+||++++..+ +.++|+|+|+++.++ +++|+++
T Consensus 223 ~~~~~~~G~-----~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 223 GTDLFKDGL-----ITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred cChHHhCce-----EEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 888889886 99999999999999999999999999999999999999876 458999999999999 8899983
Q ss_pred cccccCcceEEEEEecc-------------eeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCC
Q psy7769 211 YDTVLDIHALKLVKVGG-------------SVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVG 272 (355)
Q Consensus 211 ~~~~~g~~~v~~~~~Da-------------~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpG 272 (355)
.|..++.++++|+ ..+|+||||+| +.+++ ++ +++.++..+..+| ++|.+|+++||||
T Consensus 298 ----~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G-~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 298 ----LGLTNIETKALDARKVHEKFAEKFDKILVDAPCSGLG-VIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred ----cCCCeEEEEeCCcccccchhcccCCEEEEcCCCCCCe-eeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3555566665554 34999999999 44444 44 4677888999999 9999999999999
Q ss_pred cEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEE
Q psy7769 273 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352 (355)
Q Consensus 273 G~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~ 352 (355)
|+|||||||++++|||.||.++|++++ + ++++++....... .. .+.. ..+.|++||.+ +++|||+|+|+
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~~---~--~~~~~~~~~~~~~---~~-~~~~-~~~~r~~P~~~-~~dGfF~a~l~ 441 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEHP---E--FELVPLQHEKPDE---LV-YEVK-DGYLQILPNDY-GTDGFFIAKLR 441 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhCC---C--cEEeccccccccc---cc-cccc-CCeEEECCCCC-CCCCeEEEEEE
Confidence 999999999999999999999998752 2 4445543222111 00 0111 34678999997 78999999999
Q ss_pred Ec
Q psy7769 353 KI 354 (355)
Q Consensus 353 r~ 354 (355)
|.
T Consensus 442 k~ 443 (444)
T PRK14902 442 KK 443 (444)
T ss_pred EC
Confidence 86
No 12
>KOG2198|consensus
Probab=100.00 E-value=2.2e-39 Score=313.97 Aligned_cols=215 Identities=35% Similarity=0.531 Sum_probs=164.3
Q ss_pred CcccCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC----CCcEEEEcCCchhh--H
Q psy7769 131 DISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY----PDYYCMDGASLLPV--L 204 (355)
Q Consensus 131 ~~~~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~----~g~V~AvD~s~~Rl--l 204 (355)
.+.+|+.+....+++++||.||++|++|+++|+++||++||||||||||||+++.+.+. .|.|+|||++..|+ |
T Consensus 120 ~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L 199 (375)
T KOG2198|consen 120 PLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNML 199 (375)
T ss_pred chhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHH
Confidence 36689999999999999999999999999999999999999999999999999998775 36999999999999 7
Q ss_pred HhhccccccccCcceEE---------------------EEEecceeeecccCCCCCccCCc--c--c-cchHHHHhhhhH
Q psy7769 205 ALNIRPYDTVLDIHALK---------------------LVKVGGSVVYSTCSLSPIQNDGV--V--H-MSLKRIWEETGC 258 (355)
Q Consensus 205 ~~~l~r~~~~~g~~~v~---------------------~~~~Da~~lDaPCSgsG~t~~~~--l--~-~~~~~l~~l~~l 258 (355)
.+.++++ ...++. +..+|-.+||+||||.| +.+.. + . |+..+-..+..+
T Consensus 200 ~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dg-t~rk~~~i~~~~w~~~~~~~L~~L 274 (375)
T KOG2198|consen 200 VHQLKRL----PSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDG-TLRKNPNIWKEGWKTQRALGLHAL 274 (375)
T ss_pred HHHHhcc----CCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCc-ccccCchHhhhhhhhhhccCChHH
Confidence 6666642 222222 22334455999999998 66665 2 1 555555678889
Q ss_pred H-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccc----c-ccccccCCC--c
Q psy7769 259 E-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLK----S-LFSFANINL--S 330 (355)
Q Consensus 259 Q-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~----~-~~~~~~~~~--~ 330 (355)
| +||.+++++||+||+|||||||++|.|||+||+++|+.+.+ .++.++.+..++.+. . .+.++...+ .
T Consensus 275 Q~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~----~~~lv~~~~~lp~l~r~~g~t~~~~~~~~~~~~ 350 (375)
T KOG2198|consen 275 QLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGG----AVELVDVSGDLPGLKRMFGSTGWKVHDKVLKWF 350 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcC----cccceeeccccccceecCCCCcceEEecCcccc
Confidence 9 99999999999999999999999999999999999998643 444555433322221 1 112222222 2
Q ss_pred cEEEEecCCCCCCCceEEEEEEEc
Q psy7769 331 YGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 331 ~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
.+....|....+++|+|.+++.|.
T Consensus 351 ~~~~~vp~~~~~~~P~~~~~~~~l 374 (375)
T KOG2198|consen 351 TSPLEVPKLVANFGPMYFCEKTRL 374 (375)
T ss_pred cCccccccchhhcCCCchhhhhhc
Confidence 455677877778899999987764
No 13
>KOG2360|consensus
Probab=99.98 E-value=2.5e-32 Score=265.04 Aligned_cols=258 Identities=24% Similarity=0.225 Sum_probs=188.2
Q ss_pred CCCCcceecccCCCChhhhhhh---ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEE
Q psy7769 73 TGLHDFIPATQLKGMEGFITDA---DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYY 149 (355)
Q Consensus 73 ~~l~~~~rvn~lk~~~~~i~e~---~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~ 149 (355)
..+|+|+|+|++|..-+....- +.++..++..+.-+-+ +++++..|... +...+...+.++.|. +.
T Consensus 128 ~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~----D~~~~~ll~~~--~~n~i~~~~ly~~g~-----~i 196 (413)
T KOG2360|consen 128 IPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYV----DPHVENLIIFP--PSNFIVEHELYKNGK-----FI 196 (413)
T ss_pred CCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceec----cccchhhcccC--CCcceeeccccccCc-----eE
Confidence 4689999999999654433221 1122112211111111 23344433332 344667788899886 99
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
+||.+||+|++.|+|.+|..|+|+||+||.||+|+|..++ .|+|+|+|.++.|. ++..+. . .|..+++....|
T Consensus 197 lqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~--~--ag~~~~~~~~~d 272 (413)
T KOG2360|consen 197 LQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLK--I--AGVSIVESVEGD 272 (413)
T ss_pred EechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHH--H--cCCCcccccccc
Confidence 9999999999999999999999999999999999999775 69999999999999 777777 3 466666555655
Q ss_pred cee--------------eecccCCCCCccCCc-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCC
Q psy7769 227 GSV--------------VYSTCSLSPIQNDGV-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 227 a~~--------------lDaPCSgsG~t~~~~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~E 286 (355)
+.. +|++|||+||..|+. +. -.+++++.+..+| .++++|+.+.+. -++||||||++.+|
T Consensus 273 f~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~-k~vvystcs~~ree 351 (413)
T KOG2360|consen 273 FLNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNL-KRLVYSTCSLHREE 351 (413)
T ss_pred ccCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCch-hheeeecchhhhhh
Confidence 532 999999999877776 22 4678999999999 999999998887 59999999999999
Q ss_pred CHHHHHHHHHhhhhccCceEEEeccc--ccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 287 NDGVVHMSLKRIWEETGCEIEIKDLS--QALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 287 NE~vV~~~L~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
||.||+..|...+ ..+.+.+..+. |..++. . .| +. .+.+.|..|... ..+|||+|.|.|.
T Consensus 352 ne~vv~d~l~~~p--~~~~l~~kK~~p~w~~rg~-~--~~-~~-~e~~lr~~p~~~-~~~gffva~fer~ 413 (413)
T KOG2360|consen 352 NEQVVQEVLQQNP--DAKRLAPKKVLPAWPHRGL-S--TF-SG-AEHCLRASPKST-LTIGFFVALFERV 413 (413)
T ss_pred hhHHHHHHHhhCh--hHhhhchhhcchhhhhcCC-c--cc-cc-cccceecccCCC-CcceEEEEEeecC
Confidence 9999999998742 22334442232 333332 2 23 22 267888999886 6678999998873
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.41 E-value=2.1e-12 Score=116.28 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=103.0
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV- 229 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~- 229 (355)
+-.++....|.|+||++++|++||+|+.|..+|...+.++|+|+|.++.++ +++|.+ + ++.+|++++.+|+..
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~--~--fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAA--R--FGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHH--H--hCCCcEEEEeccchHh
Confidence 346788889999999999999999999999999666779999999999999 899999 4 578999999999865
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.|+-|-|-| .+++++|+.++..|||||+||...-++ ||+...-..+++.
T Consensus 97 L~~~~~~daiFIGGg-----------------~~i~~ile~~~~~l~~ggrlV~naitl---E~~~~a~~~~~~~ 151 (187)
T COG2242 97 LPDLPSPDAIFIGGG-----------------GNIEEILEAAWERLKPGGRLVANAITL---ETLAKALEALEQL 151 (187)
T ss_pred hcCCCCCCEEEECCC-----------------CCHHHHHHHHHHHcCcCCeEEEEeecH---HHHHHHHHHHHHc
Confidence 455554433 124489999999999999999998888 8888888888763
No 15
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=1.9e-12 Score=121.36 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=91.2
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--- 229 (355)
-...+..+.+.||++|||+|||+|-.|.++++..++|+|+++|+|..|| .++++. . .+..+++++.+||..
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~--~--~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK--K--KGVQNVEFVVGDAENLPF 115 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh--c--cCccceEEEEechhhCCC
Confidence 3445566667799999999999999999999988889999999999999 777777 3 355568999999976
Q ss_pred ----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHH
Q psy7769 230 ----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDG 289 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~ 289 (355)
.|+--.++| +++....++.|++++|.|||||+++. +.+++-++..
T Consensus 116 ~D~sFD~vt~~fg-------------lrnv~d~~~aL~E~~RVlKpgG~~~v--le~~~p~~~~ 164 (238)
T COG2226 116 PDNSFDAVTISFG-------------LRNVTDIDKALKEMYRVLKPGGRLLV--LEFSKPDNPV 164 (238)
T ss_pred CCCccCEEEeeeh-------------hhcCCCHHHHHHHHHHhhcCCeEEEE--EEcCCCCchh
Confidence 666665655 45566677899999999999997665 4444445533
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.31 E-value=3e-12 Score=119.96 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=83.1
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
.++..+.+++|++|||+|||+|..|..++.... .++|+++|+|+.++ +++++. . .+..+|+++++|+..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~--~--~~~~~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK--R--EGLQNIEFVQGDAEDLPFP 113 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH--H--TT--SEEEEE-BTTB--S-
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH--h--hCCCCeeEEEcCHHHhcCC
Confidence 556667889999999999999999999988754 58999999999999 777776 3 345689999999865
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|+-++++| ++++.+.++.|+++.+.|||||+++....+- -+|. .+..+..-
T Consensus 114 d~sfD~v~~~fg-------------lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~--p~~~-~~~~~~~~ 168 (233)
T PF01209_consen 114 DNSFDAVTCSFG-------------LRNFPDRERALREMYRVLKPGGRLVILEFSK--PRNP-LLRALYKF 168 (233)
T ss_dssp TT-EEEEEEES--------------GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB---SSH-HHHHHHHH
T ss_pred CCceeEEEHHhh-------------HHhhCCHHHHHHHHHHHcCCCeEEEEeeccC--CCCc-hhhceeee
Confidence 777777777 3444555588999999999999999766544 3453 55555443
No 17
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.20 E-value=2.6e-10 Score=103.70 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=93.9
Q ss_pred hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccC-cceEEEEEeccee
Q psy7769 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLD-IHALKLVKVGGSV 229 (355)
Q Consensus 154 aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-~~~v~~~~~Da~~ 229 (355)
...++...+++.+|++|||+|||+|..+..++... ..++|+|+|+++.++ +++|++ . .+ ..++.++..|+..
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~--~--~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE--K--FGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--hCCCCCeEEEEechhh
Confidence 35566667789999999999999999999998765 347999999999999 788887 3 34 3578888887643
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEE
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~ 308 (355)
++. . .+ ..+. .+... ....+..+++.+.++|||||++|+.+|++ ++...+...|++ .|+.++.
T Consensus 104 ~l~~-~--~~-~~D~--V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~----~g~~~~~ 167 (198)
T PRK00377 104 ILFT-I--NE-KFDR--IFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL---ETVNNALSALEN----IGFNLEI 167 (198)
T ss_pred hHhh-c--CC-CCCE--EEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH---HHHHHHHHHHHH----cCCCeEE
Confidence 111 0 00 0011 01100 00112378999999999999999999877 555566666654 3555555
Q ss_pred ecc
Q psy7769 309 KDL 311 (355)
Q Consensus 309 ~~l 311 (355)
..+
T Consensus 168 ~~~ 170 (198)
T PRK00377 168 TEV 170 (198)
T ss_pred EEE
Confidence 444
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.19 E-value=6.8e-11 Score=96.49 Aligned_cols=103 Identities=15% Similarity=0.072 Sum_probs=74.6
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-ee------eecccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-SV------VYSTCSL 236 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-~~------lDaPCSg 236 (355)
||.+|||+|||+|..+..+++.....+|+|+|+|+.++ +++++.. . ....++.+++.|+ .. .|.-.+.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~--~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE-E--GLSDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-T--TTTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-c--CCCCCeEEEECccccCcccCCCCCEEEEC
Confidence 68999999999999999999966668999999999999 8888731 1 2236899999998 22 3333221
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.. ....+......+++|+++.+.|+|||++++++|
T Consensus 78 ~~---------~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 78 GF---------TLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SG---------SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC---------ccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 10 111111112233889999999999999999998
No 19
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.18 E-value=3.5e-10 Score=102.56 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=93.0
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.|...+++....+++++|++|||+|||+|..+..++...+.++|+++|+++.++ +++|++ . .+..+++++..|+
T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~--~--~~~~~v~~~~~d~ 99 (196)
T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD--R--FGVKNVEVIEGSA 99 (196)
T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH--H--hCCCCeEEEECch
Confidence 467778888888899999999999999999999998776668999999999999 888887 3 3456788888886
Q ss_pred ee-eecccCCCCCccCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 SV-VYSTCSLSPIQNDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 ~~-lDaPCSgsG~t~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.. ++... ...+ +.... ...+++++..+.+.|+|||++++.+++. +.-..+...+++
T Consensus 100 ~~~~~~~~------~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~~~---~~~~~~~~~~~~ 157 (196)
T PRK07402 100 PECLAQLA------PAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATASSL---EGLYAISEGLAQ 157 (196)
T ss_pred HHHHhhCC------CCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEeecH---HHHHHHHHHHHh
Confidence 43 11110 0001 10000 0123478999999999999999999874 333334444544
No 20
>KOG1540|consensus
Probab=99.15 E-value=1.5e-10 Score=108.46 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=96.6
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC------CcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP------DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~------g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+.+..|+|.+|++|||+|+|+|-.|..+...... ++|+.+|+++++| .+++.++..+ .....+.++.+||.
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l-~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL-KASSRVEWVEGDAE 169 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC-CcCCceEEEeCCcc
Confidence 3456778999999999999999999999987644 8999999999999 5555532121 22245889999987
Q ss_pred e-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 229 V-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 229 ~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
. .|+-.+++| +++....|+.|++|+|.|||||++. |-..+.+|.+.+++|-...
T Consensus 170 ~LpFdd~s~D~yTiafG-------------IRN~th~~k~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFG-------------IRNVTHIQKALREAYRVLKPGGRFS---CLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred cCCCCCCcceeEEEecc-------------eecCCCHHHHHHHHHHhcCCCcEEE---EEEccccccHHHHHHHHhh
Confidence 6 555555666 3444556688999999999999887 8888888888899988754
No 21
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.14 E-value=3.5e-10 Score=113.70 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=92.2
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc--ceEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI--HALKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~--~~v~~~ 223 (355)
|.-|-....++..+ .+|.+|||+|||+|+.+++++.. +..+|+++|+|+.++ +++|++ . .+. .++.++
T Consensus 205 flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~--~--Ngl~~~~v~~i 276 (396)
T PRK15128 205 YLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVE--L--NKLDLSKAEFV 276 (396)
T ss_pred ChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHH--H--cCCCCCcEEEE
Confidence 34454544444433 35889999999999998876643 335899999999999 888888 3 233 357777
Q ss_pred Eecc----------------eeeecccCCCCCccCCccccchHHHHhh-hhHHHHHHHHHhhccCCcEEEEEeCCC--CC
Q psy7769 224 KVGG----------------SVVYSTCSLSPIQNDGVVHMSLKRIWEE-TGCEIEIKHALKLVKVGGSVVYSTCSL--SP 284 (355)
Q Consensus 224 ~~Da----------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l-~~lQ~lL~~A~~~LkpGG~lVYsTCSl--~~ 284 (355)
.+|+ ..+|||+-... ...+... ..+.+++..|.++|+|||.|+++|||- +.
T Consensus 277 ~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~----------k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~ 346 (396)
T PRK15128 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVEN----------KSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTS 346 (396)
T ss_pred EccHHHHHHHHHhcCCCCCEEEECCCCCCCC----------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCH
Confidence 6654 23888872111 1122211 123388999999999999999999994 44
Q ss_pred CCCHHHHHHHHHhhhhccCceEEEec
Q psy7769 285 IQNDGVVHMSLKRIWEETGCEIEIKD 310 (355)
Q Consensus 285 ~ENE~vV~~~L~~~~~~~~~~~~~~~ 310 (355)
++=.++|..+.. +.+.++..+.
T Consensus 347 ~~f~~~v~~aa~----~~~~~~~~l~ 368 (396)
T PRK15128 347 DLFQKIIADAAI----DAGRDVQFIE 368 (396)
T ss_pred HHHHHHHHHHHH----HcCCeEEEEE
Confidence 333444444433 3455666554
No 22
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.10 E-value=2.2e-09 Score=96.50 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=92.2
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.++....++...|++.++.+|||+|||+|..+..++...+.++|+++|+++.++ +++|++ . .+..++.+...|.
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~--~--~~~~~i~~~~~d~ 90 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ--R--FGCGNIDIIPGEA 90 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H--hCCCCeEEEecCc
Confidence 345556677777888899999999999999999999887668999999999999 788887 3 3445678877775
Q ss_pred ee-----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 228 SV-----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 228 ~~-----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.. +|.-.++. . ...+.++++.+.+.|+|||++++..... +|...+..+++++
T Consensus 91 ~~~~~~~~D~v~~~~----------~------~~~~~~~l~~~~~~Lk~gG~lv~~~~~~---~~~~~~~~~l~~~ 147 (187)
T PRK08287 91 PIELPGKADAIFIGG----------S------GGNLTAIIDWSLAHLHPGGRLVLTFILL---ENLHSALAHLEKC 147 (187)
T ss_pred hhhcCcCCCEEEECC----------C------ccCHHHHHHHHHHhcCCCeEEEEEEecH---hhHHHHHHHHHHC
Confidence 32 22221110 0 0122378899999999999999976543 6777777778764
No 23
>PRK04266 fibrillarin; Provisional
Probab=99.02 E-value=2.9e-09 Score=99.41 Aligned_cols=109 Identities=15% Similarity=0.073 Sum_probs=72.4
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG 238 (355)
.+++++|++|||+|||+|..+.+++...+.|+|+|+|+++.++ +.++++ . ..|+.++.+|+.. |..-.+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~--~----~~nv~~i~~D~~~---~~~~~~ 137 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE--E----RKNIIPILADARK---PERYAH 137 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh--h----cCCcEEEECCCCC---cchhhh
Confidence 4788999999999999999999999987668999999999998 666665 2 2467787888642 110001
Q ss_pred CccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 239 IQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+...-++.+.. ...-...+.+|.++.++|||||+++.+..
T Consensus 138 l~~~~D~i~~d--~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 138 VVEKVDVIYQD--VAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred ccccCCEEEEC--CCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 00001111110 00000011568999999999999998533
No 24
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.02 E-value=2.9e-09 Score=95.09 Aligned_cols=132 Identities=17% Similarity=0.035 Sum_probs=86.6
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce----
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS---- 228 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~---- 228 (355)
+.+....+...++.+|||+|||+|..+..++... .+|+++|+++.++ +++|+. . .+. ++++...|..
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--~--~~~-~~~~~~~d~~~~~~ 80 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAK--L--NNV-GLDVVMTDLFKGVR 80 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHH--H--cCC-ceEEEEcccccccC
Confidence 5666677777788899999999999999998875 3899999999999 777776 2 222 3555555542
Q ss_pred ------eeecccCCCCCccCCccccchHHH---HhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 229 ------VVYSTCSLSPIQNDGVVHMSLKRI---WEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 229 ------~lDaPCSgsG~t~~~~l~~~~~~l---~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
..++|+.........+ .|..... ....... ++|..+.++|||||++++++++. .++..+...|++
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~---~~~~~~~~~l~~ 155 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRG-DWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL---NGEPDTFDKLDE 155 (179)
T ss_pred CcccEEEECCCCCCCcchhccc-chhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc---CChHHHHHHHHh
Confidence 2455542111000000 0100000 0001223 89999999999999999999877 456777777765
No 25
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.01 E-value=1.1e-09 Score=107.25 Aligned_cols=107 Identities=14% Similarity=0.016 Sum_probs=77.7
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc----------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG---------- 227 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da---------- 227 (355)
.++++++|+.|||.|||+|+.+..++... ..|+++|+++.++ ++.|++ . .+..++.+...|+
T Consensus 176 ~l~~~~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~--~--~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 176 NLARVTEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLE--H--YGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHhCCCCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHH--H--hCCCCCeEEecchhcCCcccCCC
Confidence 34578899999999999999988766543 7899999999999 788887 3 3444455655554
Q ss_pred --eeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 --SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 --~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
...|||+.... . . .......++ ++|..+.+.|||||+++|.+++-
T Consensus 250 D~Iv~dPPyg~~~-~----~-----~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 250 DAIATDPPYGRST-T----A-----AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CEEEECCCCcCcc-c----c-----cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 33788873211 0 0 001122444 89999999999999999999875
No 26
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.98 E-value=1.6e-09 Score=108.43 Aligned_cols=121 Identities=15% Similarity=0.026 Sum_probs=90.2
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc--ceEEEEEe
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI--HALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~--~~v~~~~~ 225 (355)
-|-.+...+...+. |.+|||+||-+|+.|.|+|..+ ...|+.||.|...+ +++|++ - .|. ..+.++++
T Consensus 204 DqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~--L--Ng~~~~~~~~i~~ 275 (393)
T COG1092 204 DQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAE--L--NGLDGDRHRFIVG 275 (393)
T ss_pred HhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHH--h--cCCCccceeeehh
Confidence 37777666666553 9999999999999999988765 24899999999999 899998 3 343 45678777
Q ss_pred cce----------------eeecccCCCCCccCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCH
Q psy7769 226 GGS----------------VVYSTCSLSPIQNDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQND 288 (355)
Q Consensus 226 Da~----------------~lDaPCSgsG~t~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE 288 (355)
|+. .+|||- ..+.. -.|+..+-. -.|+..+.++|+|||+++.||||-.-...+
T Consensus 276 Dvf~~l~~~~~~g~~fDlIilDPPs-----F~r~k~~~~~~~rdy-----~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 276 DVFKWLRKAERRGEKFDLIILDPPS-----FARSKKQEFSAQRDY-----KDLNDLALRLLAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred hHHHHHHHHHhcCCcccEEEECCcc-----cccCcccchhHHHHH-----HHHHHHHHHHcCCCCEEEEEecCCccCHHH
Confidence 653 399997 22222 112221111 189999999999999999999999877664
No 27
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.97 E-value=3.1e-09 Score=101.05 Aligned_cols=112 Identities=11% Similarity=0.011 Sum_probs=79.6
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
+.+..+.++++++|||+|||+|..+..++...+ .++|+|+|+|+.++ ++++..... .....++.++++|+..
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~-~~~~~~i~~~~~d~~~lp~~ 142 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA-KSCYKNIEWIEGDATDLPFD 142 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh-hccCCCeEEEEcccccCCCC
Confidence 445566788999999999999999988887653 47999999999999 554432000 0123568888888754
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|.-+++.+ +....+.+++|.++.+.|||||+++.++.+-
T Consensus 143 ~~sfD~V~~~~~-------------l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 143 DCYFDAITMGYG-------------LRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCEeEEEEecc-------------cccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 344433332 1222233478999999999999999987764
No 28
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.95 E-value=1.7e-09 Score=89.04 Aligned_cols=99 Identities=17% Similarity=0.066 Sum_probs=72.4
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee--------------
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-------------- 229 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-------------- 229 (355)
|.+|||+|||+|..+.++++.. ..+++++|+++..+ ++.++. . .+. .++++...|...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~--~--~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLP--R--NGLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCH--H--CTTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHH--H--ccCCceEEEEECchhhchhhccCceeEEEE
Confidence 6799999999999999999887 68999999999999 778887 3 233 457888877643
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.|+|..... ........+. ++++++.++|||||.+++.+|.
T Consensus 76 ~npP~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 76 TNPPYGPRS-----------GDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp E--STTSBT-----------T----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ECCCCcccc-----------ccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 566652211 0111112244 8999999999999999999874
No 29
>PTZ00146 fibrillarin; Provisional
Probab=98.94 E-value=1.3e-08 Score=98.19 Aligned_cols=117 Identities=18% Similarity=0.091 Sum_probs=70.6
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee-cccCCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY-STCSLS 237 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD-aPCSgs 237 (355)
+.++||++|||+|||||.+|.++|..+. .|.|+|+|+++.++ +....+ . ..||.++..|+..-+ .+. -.
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--~----r~NI~~I~~Da~~p~~y~~-~~ 200 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--K----RPNIVPIIEDARYPQKYRM-LV 200 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--h----cCCCEEEECCccChhhhhc-cc
Confidence 4578999999999999999999999874 58999999997655 433333 1 145677777764311 000 00
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE---eCCCCCCCCHHH
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS---TCSLSPIQNDGV 290 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs---TCSl~~~ENE~v 290 (355)
+ + -++.+.. +....+.+.++.+|.++|||||+++.+ .|.-....-|.+
T Consensus 201 ~-~--vDvV~~D--va~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~ 251 (293)
T PTZ00146 201 P-M--VDVIFAD--VAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVV 251 (293)
T ss_pred C-C--CCEEEEe--CCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHH
Confidence 0 0 0111100 000001114566899999999999984 344333334455
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.94 E-value=4.5e-09 Score=97.08 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=78.7
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
......+.+++|++|||+|||+|..+..+++..+ .++|+++|+++.++ +++++. . .+..++.++.+|+..++.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK--D--AGLHNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--h--cCCCceEEEEechhcCCC
Confidence 3445567888999999999999999999998753 47999999999999 777776 3 244578888888754322
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+- + + -++.+....+.......++|+++.+.|+|||.++..+
T Consensus 111 ~~---~-~--fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 111 DD---N-S--FDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CC---C-C--ccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 21 0 0 1111100011122233378999999999999998764
No 31
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.93 E-value=3.1e-09 Score=97.22 Aligned_cols=131 Identities=15% Similarity=0.032 Sum_probs=85.8
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-eeeec---ccCCCCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-SVVYS---TCSLSPI 239 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-~~lDa---PCSgsG~ 239 (355)
++.+|||+|||+|..+..+++..+...|+|+|+++.++ +++++. . .+..++.+++.|+ ..++. +.+-..+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~--~--~~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE--E--EGLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH--H--cCCCCEEEEecCHHHHHHHHcCccccceE
Confidence 67899999999999999999877667899999999999 777776 3 3446788999988 43321 1110000
Q ss_pred ccCCccccchHHHH-hhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEE
Q psy7769 240 QNDGVVHMSLKRIW-EETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIE 307 (355)
Q Consensus 240 t~~~~l~~~~~~l~-~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~ 307 (355)
.......|...... .....+.+|+.+.++|||||.++++|+ |+..+...++.. ++.|+.++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~~~-~~~g~~~~ 177 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD------WEGYAEYMLEVL-SAEGGFLV 177 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHHHH-HhCccccc
Confidence 00000012111000 001122789999999999999999874 667777777654 34555444
No 32
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.93 E-value=2.2e-09 Score=95.45 Aligned_cols=111 Identities=14% Similarity=0.024 Sum_probs=81.8
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.|.+|.+.+..+...++.+|||+|||+|..++.++......+|+++|+++..+ +++|++ . .+..++.+...|..
T Consensus 16 ~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~--~--n~~~~v~~~~~d~~ 91 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAE--R--NGLENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHH--H--TTCTTEEEEESSTT
T ss_pred CCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH--h--cCcccccccccccc
Confidence 47888888888877788899999999999999999987666899999999999 888888 3 34444788777753
Q ss_pred e-----------eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEe
Q psy7769 229 V-----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 229 ~-----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsT 279 (355)
. .+||....+ ....... ++++.|.++|||||.+++..
T Consensus 92 ~~~~~~~fD~Iv~NPP~~~~~--------------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 92 EALPDGKFDLIVSNPPFHAGG--------------DDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTCCTTCEEEEEE---SBTTS--------------HCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeEEEEccchhccc--------------ccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 2 444431111 1111222 89999999999999996644
No 33
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.93 E-value=2.7e-09 Score=100.88 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=81.5
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~ 223 (355)
+|.-| ..+++..|++.||++||+.++|+|+.|..++..+ +.|+|+.+|+++.|+ +++|++ . .+. .+|.+.
T Consensus 24 iYpkD--~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~--~--~gl~~~v~~~ 97 (247)
T PF08704_consen 24 IYPKD--ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE--R--HGLDDNVTVH 97 (247)
T ss_dssp --HHH--HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH--H--TTCCTTEEEE
T ss_pred eeCch--HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH--H--cCCCCCceeE
Confidence 45555 5588899999999999999999999999999876 459999999999999 999998 4 344 467877
Q ss_pred Eecce---------------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhc-cCCcEEE-EEeCCCCCCC
Q psy7769 224 KVGGS---------------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLV-KVGGSVV-YSTCSLSPIQ 286 (355)
Q Consensus 224 ~~Da~---------------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~L-kpGG~lV-YsTCSl~~~E 286 (355)
+.|.. .+|.|. |+ +.+.++.+.| |+||+++ ||.|-
T Consensus 98 ~~Dv~~~g~~~~~~~~~DavfLDlp~--------------Pw---------~~i~~~~~~L~~~gG~i~~fsP~i----- 149 (247)
T PF08704_consen 98 HRDVCEEGFDEELESDFDAVFLDLPD--------------PW---------EAIPHAKRALKKPGGRICCFSPCI----- 149 (247)
T ss_dssp ES-GGCG--STT-TTSEEEEEEESSS--------------GG---------GGHHHHHHHE-EEEEEEEEEESSH-----
T ss_pred ecceecccccccccCcccEEEEeCCC--------------HH---------HHHHHHHHHHhcCCceEEEECCCH-----
Confidence 76642 244443 44 4588999999 8999887 55553
Q ss_pred CHHHHHHHHHhh
Q psy7769 287 NDGVVHMSLKRI 298 (355)
Q Consensus 287 NE~vV~~~L~~~ 298 (355)
++|++.++..
T Consensus 150 --eQv~~~~~~L 159 (247)
T PF08704_consen 150 --EQVQKTVEAL 159 (247)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 5666555544
No 34
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.90 E-value=1.7e-08 Score=91.00 Aligned_cols=114 Identities=13% Similarity=0.048 Sum_probs=81.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
+|.+|||+|||+|..+..++.....++|+|+|.++.++ ++++++ . .+..+++++++|+..+.. .+ .-
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~--~--~~~~~i~~i~~d~~~~~~----~~---~f 110 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKA--E--LGLNNVEIVNGRAEDFQH----EE---QF 110 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHH--H--hCCCCeEEEecchhhccc----cC---Cc
Confidence 48899999999999999988776668999999999999 777777 3 355678899888765311 01 01
Q ss_pred ccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 244 VVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 244 ~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
++.+... +..+..+++.+.++|+|||+++.. .....+..+..+.++.
T Consensus 111 D~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~~ 157 (181)
T TIGR00138 111 DVITSRA----LASLNVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRKC 157 (181)
T ss_pred cEEEehh----hhCHHHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHhh
Confidence 1112111 223337788889999999999976 4556677777777654
No 35
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.90 E-value=1.3e-08 Score=83.89 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=75.4
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL 236 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSg 236 (355)
...+.+.++++|||+|||+|..+..++...+.++|+++|+++.++ ++++++ . .+..+++++..|+......+
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~~~~~~~~~~~~-- 85 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR--R--FGVSNIVIVEGDAPEALEDS-- 85 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH--H--hCCCceEEEeccccccChhh--
Confidence 445567788999999999999999999887668999999999999 777777 3 34456777777754211111
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
...-++.|... .....+++++++.++|||||+++.+.
T Consensus 86 ---~~~~D~v~~~~---~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 86 ---LPEPDRVFIGG---SGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---cCCCCEEEECC---cchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 00111111110 01122388999999999999999764
No 36
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.87 E-value=1e-08 Score=94.46 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
.....++++++|++|||+|||+|..|..++...+ .++|+++|+++.++ ++++++ . .+..+++++.+|+.....
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~--~--~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR--K--LGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH--H--CCCCCeEEEECCcccCCc
Confidence 4555677899999999999999999999998864 47899999999999 888888 4 456778898888753110
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
. .+ ..+. +.... ....+...+.+.|+|||+++..
T Consensus 143 ~---~~-~fD~-Ii~~~-------~~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 P---LA-PYDR-IYVTA-------AGPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred c---cC-CCCE-EEEcC-------CcccccHHHHHhcCcCcEEEEE
Confidence 0 00 0010 00000 0114456678899999999985
No 37
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.8e-08 Score=94.70 Aligned_cols=105 Identities=20% Similarity=0.121 Sum_probs=83.3
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcce-EEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHA-LKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~-v~~~ 223 (355)
+|.-| |.+.+..+++.||++|||+++|+|..|..||...++ |+|+.+|+.+.++ +++|++ . .+..+ +.+.
T Consensus 78 IyPKD--~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~--~--~~l~d~v~~~ 151 (256)
T COG2519 78 IYPKD--AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS--E--FGLGDRVTLK 151 (256)
T ss_pred ecCCC--HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHH--H--hccccceEEE
Confidence 45555 678999999999999999999999999999987655 9999999999999 999999 4 35533 6666
Q ss_pred Eeccee-----------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEE-EEeCC
Q psy7769 224 KVGGSV-----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVV-YSTCS 281 (355)
Q Consensus 224 ~~Da~~-----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lV-YsTCS 281 (355)
..|... +|.|- |+ +.|.++.+.|||||.++ |+.|.
T Consensus 152 ~~Dv~~~~~~~~vDav~LDmp~--------------PW---------~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 152 LGDVREGIDEEDVDAVFLDLPD--------------PW---------NVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred eccccccccccccCEEEEcCCC--------------hH---------HHHHHHHHHhCCCcEEEEEcCCH
Confidence 555432 55553 44 56999999999999877 55554
No 38
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.86 E-value=3.1e-09 Score=102.46 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=81.1
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|.-|-....++.... .|.+|||++|-+||.+++++..+ ..+|+++|.|...+ +++|+. .+......++++..
T Consensus 108 FlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~--lNg~~~~~~~~~~~ 181 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAA--LNGLDLDRHRFIQG 181 (286)
T ss_dssp -GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHH--HTT-CCTCEEEEES
T ss_pred cHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHH--HcCCCccceEEEec
Confidence 455777777776653 58899999999999999877543 35799999999999 888887 32122356788877
Q ss_pred cce---------------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 226 GGS---------------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 226 Da~---------------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
|+. .+|||. ...+. |... ....+|+..++++|+|||.|+.||||-.-..+
T Consensus 182 Dvf~~l~~~~~~~~fD~IIlDPPs-----F~k~~--~~~~-----~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 182 DVFKFLKRLKKGGRFDLIILDPPS-----FAKSK--FDLE-----RDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp -HHHHHHHHHHTT-EEEEEE--SS-----EESST--CEHH-----HHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred CHHHHHHHHhcCCCCCEEEECCCC-----CCCCH--HHHH-----HHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 653 399997 22221 2111 11228999999999999999999999876654
No 39
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.83 E-value=1.4e-08 Score=93.73 Aligned_cols=108 Identities=13% Similarity=0.100 Sum_probs=75.2
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
......++++++|++|||+|||+|..|..++.... .++|+++|+++..+ ++++++ . .+..++.++.+|+....
T Consensus 65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~--~--~g~~~v~~~~gd~~~~~ 140 (212)
T PRK13942 65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK--K--LGYDNVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCCCeEEEECCcccCC
Confidence 34556677899999999999999999999998764 37999999999999 888887 3 45668899999975311
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.+- + ..+.- +... ...++....++.|||||+++.-
T Consensus 141 ~~~---~-~fD~I--~~~~------~~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 EEN---A-PYDRI--YVTA------AGPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcC---C-CcCEE--EECC------CcccchHHHHHhhCCCcEEEEE
Confidence 110 1 00110 0000 0013344566789999998874
No 40
>PRK14967 putative methyltransferase; Provisional
Probab=98.81 E-value=4.5e-08 Score=90.63 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=72.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-----------ee
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-----------SV 229 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-----------~~ 229 (355)
.+.+|++|||+|||+|..+..++... .++|+++|+++.++ +++|++ . .+. ++.++..|. ..
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~--~--~~~-~~~~~~~d~~~~~~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNAL--L--AGV-DVDVRRGDWARAVEFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH--H--hCC-eeEEEECchhhhccCCCeeEEE
Confidence 46789999999999999999888753 35999999999999 777776 2 222 345554443 23
Q ss_pred eeccc---CCCCCccCCc--cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 VYSTC---SLSPIQNDGV--VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 lDaPC---SgsG~t~~~~--l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.++|. +..+ ...+. ..|... ......++.++..+.++|||||++++.+.+.
T Consensus 107 ~npPy~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 107 SNPPYVPAPPDA-PPSRGPARAWDAG-PDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred ECCCCCCCCccc-ccccChhHhhhCC-CcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 55443 2222 11111 112211 0111123388999999999999999865555
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.78 E-value=1.7e-08 Score=91.75 Aligned_cols=103 Identities=14% Similarity=-0.009 Sum_probs=75.3
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
++|.+|||+|||+|..+..++.....++|+++|.++.++ ++++++ . .+..++++...|+..++.. + +
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~--~--~~l~~i~~~~~d~~~~~~~----~-~-- 112 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAA--E--LGLKNVTVVHGRAEEFGQE----E-K-- 112 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHH--H--cCCCCEEEEeccHhhCCCC----C-C--
Confidence 358999999999999999999866668999999999999 777777 3 3555688988887553221 1 1
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-++.+.. ....++.+++.++++|||||++++.....
T Consensus 113 fDlV~~~----~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 113 FDVVTSR----AVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred ccEEEEc----cccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 1111111 11234478999999999999999886553
No 42
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.77 E-value=3.5e-08 Score=106.03 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=85.0
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc--ceEEEEEe
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI--HALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~--~~v~~~~~ 225 (355)
-|-....++..+. +|.+|||+|||+|+.+++++..+ ..+|+++|+|+..+ +++|++ . .+. .++++++.
T Consensus 525 Dqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~--~--ng~~~~~v~~i~~ 596 (702)
T PRK11783 525 DHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFA--L--NGLSGRQHRLIQA 596 (702)
T ss_pred HHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHH--H--hCCCccceEEEEc
Confidence 3555555544443 58899999999999999998753 34799999999999 889987 3 233 35777766
Q ss_pred cc-------------eeeecccCCCCCccCCccccchHHHHhhhh-HHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 226 GG-------------SVVYSTCSLSPIQNDGVVHMSLKRIWEETG-CEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 226 Da-------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~-lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
|. ..+|||.-+.+- . ...+..... ..+++..+.++|+|||.+++++|+-.....
T Consensus 597 D~~~~l~~~~~~fDlIilDPP~f~~~~---~-----~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 597 DCLAWLKEAREQFDLIFIDPPTFSNSK---R-----MEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred cHHHHHHHcCCCcCEEEECCCCCCCCC---c-----cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh
Confidence 64 338999843220 0 001111112 228999999999999999999998765543
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=98.76 E-value=3.4e-08 Score=97.45 Aligned_cols=106 Identities=8% Similarity=-0.048 Sum_probs=75.0
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+++++|||+|||+|+.+..+++.. ..+|+++|+++.++ ++++.+ . .+. .++.+..+|+..+..+- +
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~--~--~g~~~~v~~~~~D~~~~~~~~---~--- 185 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAA--A--QGLSDKVSFQVADALNQPFED---G--- 185 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHH--h--cCCCCceEEEEcCcccCCCCC---C---
Confidence 688999999999999999999875 47999999999999 666665 2 233 46889888875432211 1
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.-++.|....+......+++++++.++|||||+++.+++.
T Consensus 186 ~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 186 QFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 1112222222333333447899999999999999998764
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.75 E-value=5.6e-08 Score=92.31 Aligned_cols=111 Identities=17% Similarity=0.070 Sum_probs=74.2
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
...+++|++|||+|||+|..+..++...+ .++|+++|+++.++ ++++.. . .+..++.+...|...++.+-
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~--~--~g~~~v~~~~~d~~~l~~~~--- 144 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR--K--AGYTNVEFRLGEIEALPVAD--- 144 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH--H--cCCCCEEEEEcchhhCCCCC---
Confidence 34678999999999999988887777654 47899999999999 777776 3 34567788887765432210
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+ + -++.+...-+......++++++++++|||||+++.+.-.
T Consensus 145 ~-~--fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 145 N-S--VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred C-c--eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 0 0 011111000111112237899999999999999997543
No 45
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=4.4e-08 Score=89.77 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=72.5
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeec
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYS 232 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDa 232 (355)
.....|++++|++|||+|||+|..+..+++..+ .++|+++|+++.++ +++|++ . .+. .++++..+|+...-+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~--~--~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE--R--LGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCCCcEEEEECCcccCCc
Confidence 345667889999999999999999999998764 48999999999999 778887 3 344 357888888753111
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+ .+ ..+. + +... ....+....++.|+|||+|+..
T Consensus 139 ~---~~-~fD~-I-i~~~------~~~~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 K---HA-PFDA-I-IVTA------AASTIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred c---CC-CccE-E-EEcc------CcchhhHHHHHhcCcCcEEEEE
Confidence 1 00 0010 0 0000 0013345677889999999885
No 46
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.75 E-value=3.1e-08 Score=96.68 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=70.1
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-----------
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG----------- 227 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da----------- 227 (355)
.+...++.+|||+|||+|..++.+|... ..|+|+|+++.++ +++|++ . .+..++++..+|+
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~--~--~~l~~v~~~~~D~~~~~~~~~~~~ 241 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAA--E--LGLTNVQFQALDSTQFATAQGEVP 241 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHH--H--cCCCceEEEEcCHHHHHHhcCCCC
Confidence 3344467899999999999999999854 6899999999999 888887 3 3455677776654
Q ss_pred --eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 228 --SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 228 --~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
..+|||+.|.+ ..+..++.-++| +.|||++|.-..
T Consensus 242 D~Vv~dPPr~G~~---------------------~~~~~~l~~~~~-~~ivyvsc~p~t 278 (315)
T PRK03522 242 DLVLVNPPRRGIG---------------------KELCDYLSQMAP-RFILYSSCNAQT 278 (315)
T ss_pred eEEEECCCCCCcc---------------------HHHHHHHHHcCC-CeEEEEECCccc
Confidence 33888886654 112233344567 589999998744
No 47
>PRK08317 hypothetical protein; Provisional
Probab=98.73 E-value=1.4e-07 Score=86.19 Aligned_cols=127 Identities=13% Similarity=0.018 Sum_probs=82.0
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCS 235 (355)
...+.+.++.+|||+|||+|..+..++... ..++++++|+++.++ ++++.. ....++.+...|....+.+-
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-----~~~~~~~~~~~d~~~~~~~~- 85 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-----GLGPNVEFVRGDADGLPFPD- 85 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-----CCCCceEEEecccccCCCCC-
Confidence 456678899999999999999999999876 457999999999998 555533 12245777777764322110
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC----CCCCHHHHHHHHH
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS----PIQNDGVVHMSLK 296 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~----~~ENE~vV~~~L~ 296 (355)
+ + .++.+...-+........+++++.++|||||.++.+.+... ...+...+..++.
T Consensus 86 --~-~--~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (241)
T PRK08317 86 --G-S--FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN 145 (241)
T ss_pred --C-C--ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH
Confidence 1 1 11111111122222333789999999999999999876532 2234444444443
No 48
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.73 E-value=4.4e-08 Score=88.96 Aligned_cols=122 Identities=13% Similarity=0.051 Sum_probs=81.6
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
.+.+|||+|||+|..+..+|...+.+.|+++|++..++ +++++. . .+..|+.++++|+..+....-..+ +.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~--~--~~l~ni~~i~~d~~~~~~~~~~~~-~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN--K--LGLKNLHVLCGDANELLDKFFPDG-SLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH--H--hCCCCEEEEccCHHHHHHhhCCCC-ceeE
Confidence 45699999999999999999887778999999999999 677776 3 355689999999854211110001 1111
Q ss_pred c-c----ccchHHH-HhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 244 V-V----HMSLKRI-WEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 244 ~-l----~~~~~~l-~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
- + .|...+. +.+....++++.+.+.|||||.|.++| .++.-..++++..
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t------d~~~~~~~~~~~~ 145 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT------DNEPLFEDMLKVL 145 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe------CCHHHHHHHHHHH
Confidence 1 1 1322111 111111288999999999999999988 5556666665544
No 49
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.73 E-value=8.4e-08 Score=90.26 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=72.5
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--- 229 (355)
+......+.+.++.+|||+|||+|..+..+++..+.++|+++|+++.++ +++++. ++.+...|...
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---------~~~~~~~d~~~~~~ 90 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---------DCQFVEADIASWQP 90 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---------CCeEEECchhccCC
Confidence 3344455567889999999999999999999887668999999999998 555543 24566666543
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+|...+... ++|-+ ....+|+.+.+.|||||.++.++
T Consensus 91 ~~~fD~v~~~~~------l~~~~-------d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 91 PQALDLIFANAS------LQWLP-------DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCccEEEEccC------hhhCC-------CHHHHHHHHHHhcCCCcEEEEEC
Confidence 222222111 22322 22378999999999999998864
No 50
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.73 E-value=1.6e-08 Score=93.43 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=72.2
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
....+|+++||++|||+++|+|..|..++.+.++ |+|+++|+++... +++++. . .+..|+.++.+|+..
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~--~--~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLA--R--LGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHH--H--HTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHH--H--hccCceeEEEcchhhcccc
Confidence 4457778999999999999999999999998754 7899999999888 889998 4 467789999999864
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.|.-..+.+. . ++=...++.|++||+||.-
T Consensus 139 ~apfD~I~v~~a~----------~---------~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 139 EAPFDRIIVTAAV----------P---------EIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp G-SEEEEEESSBB----------S---------S--HHHHHTEEEEEEEEEE
T ss_pred CCCcCEEEEeecc----------c---------hHHHHHHHhcCCCcEEEEE
Confidence 3333332221 0 2234566789999999973
No 51
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.6e-08 Score=91.55 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=77.8
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
+....+|+++||++||+++||+|.-|+.||++. ++|+++|+.+.-. +++|++ . +|..||.+.++||..
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~--~--lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLE--T--LGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHH--H--cCCCceEEEECCcccCCCC
Confidence 344678899999999999999999999999998 6999999999888 899999 4 678889999999975
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.|.-|-.-+.. ++=...++.||+||++|.---
T Consensus 136 ~aPyD~I~Vtaaa~-------------------~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAP-------------------EVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccC-------------------CCCHHHHHhcccCCEEEEEEc
Confidence 44444222210 122345567999999998543
No 52
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.71 E-value=9.9e-08 Score=90.86 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=77.8
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
....+..+.+.++.+|||+|||+|+.+..++... .++|+++|+++.++ ++++.. . ..++.+...|......
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~--~----~~~i~~~~~D~~~~~~ 113 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNS--D----KNKIEFEANDILKKDF 113 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcC--c----CCceEEEECCcccCCC
Confidence 4445556788999999999999999998888654 46999999999998 665554 1 2467888888643211
Q ss_pred ccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
|- ..-++.|....+.... ..+.+|+++.++|||||+++.+..
T Consensus 114 ~~------~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 114 PE------NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CC------CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 10 0111333333333322 233899999999999999998754
No 53
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.71 E-value=4.3e-08 Score=91.95 Aligned_cols=107 Identities=14% Similarity=0.034 Sum_probs=74.3
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
+|...+......+...++.+|||+|||+|..+..++... ..|+++|+|+.++ ++++.. . ..++.+|.
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~--~-------~~~~~~d~ 94 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA--A-------DHYLAGDI 94 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC--C-------CCEEEcCc
Confidence 466666666677766678899999999999988887653 7899999999999 555443 1 23455555
Q ss_pred ee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 228 SV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 228 ~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.. +|.-.|... +.|. .....+|.++.+.|||||.++++|-
T Consensus 95 ~~~~~~~~~fD~V~s~~~------l~~~-------~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 95 ESLPLATATFDLAWSNLA------VQWC-------GNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ccCcCCCCcEEEEEECch------hhhc-------CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 33 333332211 2222 2233789999999999999999873
No 54
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.70 E-value=3.2e-08 Score=85.83 Aligned_cols=108 Identities=12% Similarity=0.070 Sum_probs=76.3
Q ss_pred CCCCeEeeecccCcchHHHHHH-hcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQ-TLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~-~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.+.+|||+|||+|..+..++. ....++++++|+++.++ ++++++ . .+..++++.+.|... .+.. . ..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~--~--~~~~ni~~~~~d~~~--l~~~-~--~~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAK--E--LGLDNIEFIQGDIED--LPQE-L--EE 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHH--H--TTSTTEEEEESBTTC--GCGC-S--ST
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccc--c--ccccccceEEeehhc--cccc-c--CC
Confidence 5688999999999999999995 44568999999999999 777776 3 455689999999865 3321 1 00
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.-++.+...-+......+.+++.+.++|++||.++.+.+.
T Consensus 73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 1111111111222233337899999999999999998888
No 55
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.69 E-value=2.6e-07 Score=89.02 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=76.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc-----------ee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG-----------SV 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da-----------~~ 229 (355)
+.++.+|||+|||+|..+..++......+|+|+|+|+..+ +++|++ . .+. .++.++..|. ..
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~--~--~~~~~~i~~~~~D~~~~~~~~~fD~Iv 194 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE--R--HGLEDRVTLIQSDLFAALPGRKYDLIV 194 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEECchhhccCCCCccEEE
Confidence 4556799999999999999999887668999999999999 888887 3 233 3566666554 33
Q ss_pred eecccCCCCCccC--CccccchHHHH----hhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 230 VYSTCSLSPIQND--GVVHMSLKRIW----EETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 lDaPCSgsG~t~~--~~l~~~~~~l~----~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
.|||+...+.... ..+++.+.... .-..+. .++..+.++|+|||++++-+.
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7788744331000 00112221110 011233 899999999999999987655
No 56
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.67 E-value=1.2e-07 Score=94.95 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=87.8
Q ss_pred EEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 149 YCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 149 ~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
|++|..-.+ ..+....+..+||+|||+|..++++|...+...++|+|+++.++ +.+++. . .+..|+.++++|
T Consensus 107 ~~~d~~~~~--~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~--~--~gL~NV~~i~~D 180 (390)
T PRK14121 107 YILDIDNFL--DFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE--L--LNLKNLLIINYD 180 (390)
T ss_pred ccCCHHHHH--HHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEECC
Confidence 466755333 33445667899999999999999999988778999999999999 666666 3 466789999999
Q ss_pred ceeeecccCCCCCccCCc-cc----cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 227 GSVVYSTCSLSPIQNDGV-VH----MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 227 a~~lDaPCSgsG~t~~~~-l~----~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+..+..+. ..| +.+.- +. |...+-+ +......|+.+.++|+|||.+...|.+.
T Consensus 181 A~~ll~~~-~~~-s~D~I~lnFPdPW~KkrHR-Rlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 181 ARLLLELL-PSN-SVEKIFVHFPVPWDKKPHR-RVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred HHHhhhhC-CCC-ceeEEEEeCCCCccccchh-hccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 86532211 111 11211 11 5333221 1111289999999999999999999876
No 57
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.67 E-value=9.3e-08 Score=90.55 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=78.9
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEE--------------Eeccee
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLV--------------KVGGSV 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~--------------~~Da~~ 229 (355)
++.+|||+|||+|..++.++......+|+++|+|+.++ +++|++ . .+. +++ ..|...
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~--~--~~~---~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA--D--AGG---TVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCC---EEEEeechhhcchhcCCCEeEEE
Confidence 34589999999999999999876556899999999999 788886 2 121 122 235555
Q ss_pred eecccCCCCCccCC---ccc-cchH-HH---HhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 VYSTCSLSPIQNDG---VVH-MSLK-RI---WEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 lDaPCSgsG~t~~~---~l~-~~~~-~l---~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+||||...+ .... ..+ +.+. .+ ......+ +++..|.++|+|||.+++.+..- +-+. |...+++
T Consensus 159 ~NPPy~~~~-~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---~~~~-v~~~l~~ 230 (251)
T TIGR03704 159 ANAPYVPTD-AIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---QAPL-AVEAFAR 230 (251)
T ss_pred ECCCCCCch-hhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---hHHH-HHHHHHH
Confidence 999997655 2111 111 1111 11 1112334 89999999999999999987642 3334 4444543
No 58
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.66 E-value=2.5e-07 Score=83.29 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=63.3
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhhHHhhccccccccCcceEEEEEec--------------
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVG-------------- 226 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~D-------------- 226 (355)
-.+++|++|||+|||||+.+.+++... ..++|+++|+++.+. . .++.+++.|
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~----~---------~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP----I---------ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc----C---------CCceEEEeeCCChhHHHHHHHHh
Confidence 346789999999999999999998876 347899999998541 0 112233333
Q ss_pred ------ceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 227 ------GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 227 ------a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
....|+++..+| .|...........+.+|..++++|+|||+++...
T Consensus 95 ~~~~~D~V~~~~~~~~~g-------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISG-------YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCccEEEcCCCCCCCC-------CccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 222333221122 1333222222222388999999999999999864
No 59
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.64 E-value=8.6e-08 Score=97.76 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=69.2
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc----------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG---------- 227 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da---------- 227 (355)
..+++.+|++|||+|||+|..++.+|... .+|+|+|+|+.++ +++|++ . .+..++.+..+|+
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~--~--~~~~~v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENAR--R--NGLDNVTFYHANLEEDFTDQPWA 364 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHH--H--cCCCceEEEEeChHHhhhhhhhh
Confidence 34567789999999999999999999875 6899999999999 888887 3 3455677766654
Q ss_pred ------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 ------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+|||.+|.+ +++....+ ++| +.+||..|.-
T Consensus 365 ~~~fD~Vi~dPPr~g~~---------------------~~~~~l~~-~~~-~~ivyvSCnp 402 (443)
T PRK13168 365 LGGFDKVLLDPPRAGAA---------------------EVMQALAK-LGP-KRIVYVSCNP 402 (443)
T ss_pred cCCCCEEEECcCCcChH---------------------HHHHHHHh-cCC-CeEEEEEeCh
Confidence 23777774422 33433333 577 5799999954
No 60
>PRK14968 putative methyltransferase; Provisional
Probab=98.63 E-value=6.8e-07 Score=79.30 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=81.4
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce--EEEEEeccee-
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA--LKLVKVGGSV- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~--v~~~~~Da~~- 229 (355)
+.+.+..+...+|.+|||+|||.|..+..++.. ...|+++|+++..+ +++++. . .+..+ +.++..|...
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~--~--~~~~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAK--L--NNIRNNGVEVIRSDLFEP 85 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHH--H--cCCCCcceEEEecccccc
Confidence 445555566688999999999999999999887 47999999999998 777765 2 22222 5565555422
Q ss_pred ----------eecccCCCCCccCCccccchHHHH----hhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHH
Q psy7769 230 ----------VYSTCSLSPIQNDGVVHMSLKRIW----EETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 230 ----------lDaPCSgsG~t~~~~l~~~~~~l~----~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L 295 (355)
.++|....+ .....-.|...... ....++.+++.+.++|||||.+++..+++. +..-+..++
T Consensus 86 ~~~~~~d~vi~n~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~---~~~~l~~~~ 161 (188)
T PRK14968 86 FRGDKFDVILFNPPYLPTE-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT---GEDEVLEYL 161 (188)
T ss_pred ccccCceEEEECCCcCCCC-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC---CHHHHHHHH
Confidence 344431111 00000001000000 011233789999999999999999888764 223344455
Q ss_pred Hh
Q psy7769 296 KR 297 (355)
Q Consensus 296 ~~ 297 (355)
.+
T Consensus 162 ~~ 163 (188)
T PRK14968 162 EK 163 (188)
T ss_pred HH
Confidence 43
No 61
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.63 E-value=2.4e-07 Score=87.18 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=72.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG 238 (355)
+.++.+|||+|||+|..+..++... +.++|+++|+|+.++ +++++. . .+. .++.++.+|...++.+. ...
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~--~--~~~~~~v~~~~~d~~~~~~~~-~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHID--A--YKAPTPVDVIEGDIRDIAIEN-ASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHH--h--cCCCCCeEEEeCChhhCCCCC-CCE
Confidence 4578999999999999998888753 458999999999999 777776 3 232 36888888875432221 011
Q ss_pred CccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 239 IQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+ +..-.+..+. ..+.+++++.+.|||||.++.+...
T Consensus 129 v-------v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 129 V-------VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred E-------ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 0 0000111111 1227899999999999999998743
No 62
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.63 E-value=1.4e-07 Score=85.91 Aligned_cols=113 Identities=12% Similarity=-0.042 Sum_probs=74.2
Q ss_pred hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee
Q psy7769 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 154 aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
.+......+.+.++.+|||+|||+|..+..+|+.+ ..|+|+|+|+.++ +++++. . .+..++.+...|....+
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~--~--~~~~~v~~~~~d~~~~~ 91 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKA--A--ENLDNLHTAVVDLNNLT 91 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH--H--cCCCcceEEecChhhCC
Confidence 34455666677788899999999999999999864 6899999999999 666655 2 34455777777754332
Q ss_pred cccCCCCCccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.+- . -++.|...-+..+ ..++.++..+.++|||||.+++.+
T Consensus 92 ~~~-----~--fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 92 FDG-----E--YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCC-----C--cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 221 1 1111111111111 123388999999999999966543
No 63
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.62 E-value=2.6e-07 Score=94.73 Aligned_cols=115 Identities=17% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccC
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCS 235 (355)
.+..+.+.+|.+|||+|||+|..+..++... ..+|+++|+|+.++ ++++.. . . ..++.+...|....+.|-
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~--~--~-~~~v~~~~~d~~~~~~~~- 330 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAI--G--R-KCSVEFEVADCTKKTYPD- 330 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh--c--C-CCceEEEEcCcccCCCCC-
Confidence 4445567889999999999999998888765 46899999999999 555554 2 1 135788888864322221
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+ .-++.++...+......+.+|+++.++|||||+++.++-...+
T Consensus 331 --~---~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~ 374 (475)
T PLN02336 331 --N---SFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSP 374 (475)
T ss_pred --C---CEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 0 0111122222233333347899999999999999998755443
No 64
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.61 E-value=2.6e-07 Score=85.18 Aligned_cols=111 Identities=18% Similarity=0.090 Sum_probs=69.1
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhhHHhhccccccccCcceEEEEEeccee-------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSV------------- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~------------- 229 (355)
+++|.+|||+|||||+.+..+++..+ .+.|+|+|+++ + . ...++.++++|...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~------~------~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M------D------PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c------c------CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 46799999999999999999998864 47999999987 1 1 11235666666543
Q ss_pred --eecccCCCCCccCCccccc----hHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 230 --VYSTCSLSPIQNDGVVHMS----LKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~----~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
+|.-+|... ..|. .+.......+..+|..+.++|||||+++..+ ...+...-+-..+.
T Consensus 116 ~~~D~V~S~~~------~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~~~~~~~~~l~~l~ 179 (209)
T PRK11188 116 SKVQVVMSDMA------PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV---FQGEGFDEYLREIR 179 (209)
T ss_pred CCCCEEecCCC------CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---ecCcCHHHHHHHHH
Confidence 333333221 1111 1111111112278999999999999999865 33344333334443
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.61 E-value=1.8e-07 Score=92.61 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=83.7
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.|.+|.+....+......+|||+|||+|..+..++...+..+|+++|+++.++ ++++++ . .+.. .++...|..
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~--~--n~l~-~~~~~~D~~ 255 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA--A--NGLE-GEVFASNVF 255 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCC-CEEEEcccc
Confidence 57888888887776666799999999999999999887667999999999999 777777 3 2221 244444432
Q ss_pred ----------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCC
Q psy7769 229 ----------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 229 ----------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~E 286 (355)
..++|- ++... ......+++++.+.+.|||||.+++.+.+..|-+
T Consensus 256 ~~~~~~fDlIvsNPPF-----------H~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 256 SDIKGRFDMIISNPPF-----------HDGIQ--TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred cccCCCccEEEECCCc-----------cCCcc--ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 122221 11000 0111223899999999999999999999887755
No 66
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.59 E-value=1.6e-07 Score=88.64 Aligned_cols=106 Identities=7% Similarity=-0.017 Sum_probs=72.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
.++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. . .+. .++.++++|...+.....+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~--~--~g~~~~v~~~~~d~~~l~~~~~~----- 111 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAE--A--KGVSDNMQFIHCAAQDIAQHLET----- 111 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH--h--cCCccceEEEEcCHHHHhhhcCC-----
Confidence 457799999999999999998864 6899999999999 777776 3 233 4678888887543321210
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.-++.+...-+..+...+.+|..+.++|||||+++.....
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 1111122222222333347899999999999999865444
No 67
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.59 E-value=2e-07 Score=87.92 Aligned_cols=135 Identities=14% Similarity=0.045 Sum_probs=90.7
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc----
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG---- 227 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da---- 227 (355)
+.|.+....+....+|||+|||.|..++.+|+...+.+|+++|+++.+. +++|++ . .+. +++.+++.|.
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~--l--n~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA--L--NPLEERIQVIEADIKEFL 108 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHH--h--CcchhceeEehhhHHHhh
Confidence 5566666667778899999999999999999986669999999999999 888887 2 122 5677776654
Q ss_pred ----------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 ----------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 ----------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
..+.||-=-.|.....+-.....+......++++++.|.++||+||++.+. ++.|.-.-+-..+.+
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V----~r~erl~ei~~~l~~ 184 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV----HRPERLAEIIELLKS 184 (248)
T ss_pred hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE----ecHHHHHHHHHHHHh
Confidence 336677633331100000011112222233448999999999999999884 455555555555554
No 68
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.58 E-value=3e-07 Score=84.21 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=74.1
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
......+.++++++|||+|||+|..|..++... ++|+++|+++.++ ++++++ + .+..++.+...|+....++
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~--~--~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLK--Q--LGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHH--H--CCCCceEEEECCcccCCCc
Confidence 444567788999999999999999999888775 5899999999998 888887 3 3556788888886421110
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+ ..+.-+.+. ....+.....+.|+|||+++....
T Consensus 142 ---~~-~fD~I~~~~--------~~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 ---YA-PFDRILVTA--------AAPEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---CC-CcCEEEEcc--------CchhhhHHHHHhcCCCcEEEEEEc
Confidence 01 111101010 011345567789999999998764
No 69
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.56 E-value=2e-07 Score=94.57 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=70.7
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce--------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS-------- 228 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~-------- 228 (355)
...+.+.++++|||+|||+|..++.+|... .+|+|+|+++.++ +++|++ . .+..|++++.+|+.
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~--~--~~~~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAE--L--NGIANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHH--H--hCCCceEEEeCCHHHHHHHHHh
Confidence 344567788999999999999999999865 5899999999999 888887 3 35567887776652
Q ss_pred --------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 229 --------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 229 --------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+|+|..|.. .++++. +..++|+ .+||.+|..
T Consensus 359 ~~~~~D~vi~dPPr~G~~--------------------~~~l~~-l~~l~~~-~ivyvsc~p 398 (431)
T TIGR00479 359 AGQIPDVLLLDPPRKGCA--------------------AEVLRT-IIELKPE-RIVYVSCNP 398 (431)
T ss_pred cCCCCCEEEECcCCCCCC--------------------HHHHHH-HHhcCCC-EEEEEcCCH
Confidence 2677764432 034443 3347885 689999964
No 70
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.55 E-value=3.3e-07 Score=89.38 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=73.6
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc-----------eeeec
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG-----------SVVYS 232 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da-----------~~lDa 232 (355)
+.+|||+|||+|..+..++...+..+|+|+|+|+..+ +++|++ . .+. .++.++++|. ...+|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~--~--~~l~~~i~~~~~D~~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE--R--HGLEDRVTLIESDLFAALPGRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH--H--hCCCCcEEEEECchhhhCCCCCccEEEECC
Confidence 3689999999999999999877668999999999999 888887 3 233 3466666553 33788
Q ss_pred ccCCCCCcc--CCccccchHHHH----hhhhHH-HHHHHHHhhccCCcEEEEE
Q psy7769 233 TCSLSPIQN--DGVVHMSLKRIW----EETGCE-IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 233 PCSgsG~t~--~~~l~~~~~~l~----~l~~lQ-~lL~~A~~~LkpGG~lVYs 278 (355)
|+.+.+-.. ...+++.|.... .-..+. .+++.+.++|+|||.+++-
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 886544100 000122221100 001223 8999999999999999874
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.55 E-value=6.2e-07 Score=83.42 Aligned_cols=124 Identities=15% Similarity=0.037 Sum_probs=80.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce-----------eeec
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS-----------VVYS 232 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~-----------~lDa 232 (355)
.+.+|||+|||+|..+..++...+...|+++|+++.++ +++++. . .+..++.+...|.. ..++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~--~--~~~~~~~~~~~d~~~~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA--R--LGLDNVTFLQSDWFEPLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCeEEEEECchhccCcCCceeEEEECC
Confidence 45699999999999999999877667999999999999 777776 3 24445666665542 3777
Q ss_pred ccCCCCCc--cCCccc-cchHHHH-----hhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 233 TCSLSPIQ--NDGVVH-MSLKRIW-----EETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 233 PCSgsG~t--~~~~l~-~~~~~l~-----~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
|+...+.. ....++ +.+.... .+.....++.++.++|+|||.+++.+ +. ....-+..++++
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~---~~~~~~~~~l~~ 231 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GY---DQGEAVRALFEA 231 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-Cc---cHHHHHHHHHHh
Confidence 87554310 001111 1221111 11112278999999999999999863 22 223445555554
No 72
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.54 E-value=5.9e-07 Score=82.50 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=76.6
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
..+..+.+.++.+|||+|||+|..+..++..++ ..+++++|+++.++ +++++. .. ....++.+...|...
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~--~~-~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR--DL-GLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhc--cc-ccccCeEEEecccccCCCC
Confidence 345556677889999999999999999988775 48999999999998 777765 21 012356777777643
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|.-+++.+ +........+|..+.++|+|||.+++.+-+.
T Consensus 119 ~~~~D~I~~~~~-------------l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 119 DNSFDAVTIAFG-------------LRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCCccEEEEecc-------------cccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 222221111 1122233378999999999999999876554
No 73
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.54 E-value=3.5e-07 Score=91.53 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=81.0
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC-cceEEEEEecc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD-IHALKLVKVGG 227 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-~~~v~~~~~Da 227 (355)
-|.++.+....+....+.+|||+|||+|..++.+++..+..+|+++|+|+.++ +++|++ .+... ..++.+...|+
T Consensus 213 LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~--~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 213 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE--TNMPEALDRCEFMINNA 290 (378)
T ss_pred cChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--HcCcccCceEEEEEccc
Confidence 58888888888876667799999999999999999887678999999999999 778876 32111 23566666554
Q ss_pred e-----------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 228 S-----------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 228 ~-----------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
. .++||.. .| + .+.. . ...+++..+.+.|+|||.+...+
T Consensus 291 l~~~~~~~fDlIlsNPPfh-~~-----~-~~~~-~-----ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 291 LSGVEPFRFNAVLCNPPFH-QQ-----H-ALTD-N-----VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCCCCCEEEEEECcCcc-cC-----c-cCCH-H-----HHHHHHHHHHHhcccCCEEEEEE
Confidence 2 1333331 00 0 0111 1 11288999999999999999875
No 74
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.53 E-value=5.7e-07 Score=85.10 Aligned_cols=114 Identities=13% Similarity=-0.013 Sum_probs=76.2
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec-----------ce
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG-----------GS 228 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D-----------a~ 228 (355)
+...++.+|||+|||+|..+..++...+...|+++|+++.++ +++|+. . ....++.++..| ..
T Consensus 104 ~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~--~--~~~~~i~~~~~d~~~~~~~~~fD~I 179 (275)
T PRK09328 104 LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK--H--GLGARVEFLQGDWFEPLPGGRFDLI 179 (275)
T ss_pred ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--h--CCCCcEEEEEccccCcCCCCceeEE
Confidence 345678899999999999999999887678999999999999 777765 1 122345555444 33
Q ss_pred eeecccCCCCCcc--CCccc-cchHHH----HhhhhHH-HHHHHHHhhccCCcEEEEEe
Q psy7769 229 VVYSTCSLSPIQN--DGVVH-MSLKRI----WEETGCE-IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 229 ~lDaPCSgsG~t~--~~~l~-~~~~~l----~~l~~lQ-~lL~~A~~~LkpGG~lVYsT 279 (355)
..++|+...+... ...++ +.+... ....... .++.++.++|+|||.+++.+
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4788886544210 11111 221110 0111233 89999999999999999854
No 75
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.53 E-value=6.3e-07 Score=86.76 Aligned_cols=121 Identities=10% Similarity=0.032 Sum_probs=83.5
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDa 232 (355)
..++..++..++.+|||+|||+|..+..+++..+..+++++|. +..+ +++++. . .+. ++++++.+|+...+.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~--~--~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA--E--KGVADRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH--h--CCccceEEEEecCccCCCC
Confidence 3445566778899999999999999999999887789999997 5667 777777 3 233 468899999764333
Q ss_pred ccCCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCH
Q psy7769 233 TCSLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQND 288 (355)
Q Consensus 233 PCSgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE 288 (355)
|- +..+...+-++ |..+... ++|+++.+.|+|||+++.....+...++.
T Consensus 214 ~~-~D~v~~~~~lh~~~~~~~~------~il~~~~~~L~pgG~l~i~d~~~~~~~~~ 263 (306)
T TIGR02716 214 PE-ADAVLFCRILYSANEQLST------IMCKKAFDAMRSGGRLLILDMVIDDPENP 263 (306)
T ss_pred CC-CCEEEeEhhhhcCChHHHH------HHHHHHHHhcCCCCEEEEEEeccCCCCCc
Confidence 31 11110000011 4333211 78999999999999999887666554443
No 76
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.51 E-value=3.9e-07 Score=85.90 Aligned_cols=102 Identities=11% Similarity=-0.072 Sum_probs=67.9
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL 236 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSg 236 (355)
...+.+.++.+|||+|||+|..+..++...+.++|+++|+|+.++ ++++ ++.+...|+..+. +-
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~-~~-- 87 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK-PK-- 87 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC-CC--
Confidence 455667789999999999999999999876567999999999998 3221 2356666654321 10
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+ . -++.+...-+..+.....+++++.+.|||||.++.+
T Consensus 88 -~-~--fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 88 -P-D--TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -C-C--ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 1 1 111111111122222237899999999999999986
No 77
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.51 E-value=4.6e-07 Score=84.54 Aligned_cols=108 Identities=14% Similarity=-0.003 Sum_probs=72.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
+.++.+|||++||+|..+..+++.. ..++|+++|+++.++ ++++++ .+ ....++.++.+|...++.+- ...+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~--~~-~~~~~v~~~~~d~~~~~~~~-~d~v 126 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA--AY-HSEIPVEILCNDIRHVEIKN-ASMV 126 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHH--hc-CCCCCeEEEECChhhCCCCC-CCEE
Confidence 3578899999999999999998865 357899999999999 777776 31 11246788888876533221 1110
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.....++|-+. ...+.+++++.+.|||||.++.+.-
T Consensus 127 ~~~~~l~~~~~-----~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFTLQFLPP-----EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eeecchhhCCH-----HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 00000122111 1122789999999999999999853
No 78
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.50 E-value=4.9e-07 Score=88.71 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=71.9
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
...+++++|++|||+|||+|..+..+++..+ .+.|+++|+++.++ ++++++ . .+..++.++.+|+..
T Consensus 73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~--~--~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR--R--LGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEeCChhhcccccC
Confidence 3455788999999999999999999998765 37899999999999 777877 3 456678888888643
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.|.--+..| ...+...+++.|+|||+++...
T Consensus 149 ~fD~Ii~~~g-------------------~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVG-------------------VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CccEEEECCc-------------------hHHhHHHHHHhcCCCCEEEEEe
Confidence 122111111 1134456778999999988754
No 79
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.2e-06 Score=80.39 Aligned_cols=115 Identities=21% Similarity=0.161 Sum_probs=75.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhhHHhhccccccccCcceEEEEEeccee-------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSV------------- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~------------- 229 (355)
+++|+.|+|+||||||++..+++.+. .++|+|+|+.+-.. +.+|.++++|.+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-------------~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-------------IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-------------CCCceEEeeeccCccHHHHHHHHcCC
Confidence 46899999999999999999988764 47799999988332 2335666666543
Q ss_pred --eecccCCCCCccCCc-cccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 --VYSTCSLSPIQNDGV-VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~-l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|...|-.- +.. -.|+.+.... ..+- ..+.-|...|+|||.+|-. ...-++++.+-+.++++
T Consensus 110 ~~~DvV~sD~a---p~~~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K---~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 110 APVDVVLSDMA---PNTSGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAK---VFQGEDFEDLLKALRRL 175 (205)
T ss_pred CCcceEEecCC---CCcCCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEE---EEeCCCHHHHHHHHHHh
Confidence 344443211 000 1133332222 1222 7788899999999999854 45567777777777765
No 80
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.49 E-value=3e-07 Score=90.27 Aligned_cols=107 Identities=13% Similarity=-0.102 Sum_probs=72.8
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
.+.+|.+|||+|||.|..+..++... +.|+++|.++.++ ++.+.. .. ....++.+++.|+..+..+- +
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~--~~-~~~~~i~~~~~dae~l~~~~---~-- 197 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHAD--MD-PVTSTIEYLCTTAEKLADEG---R-- 197 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHH--hc-CcccceeEEecCHHHhhhcc---C--
Confidence 35678899999999999998888753 6899999999999 555544 10 11246788887764321110 0
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.-++.+.-.-+..+.....+|+...++|||||.++.+|-
T Consensus 198 -~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 198 -KFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred -CCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 011112233344455555889999999999999999873
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.48 E-value=1.3e-06 Score=82.35 Aligned_cols=118 Identities=16% Similarity=0.021 Sum_probs=74.7
Q ss_pred cHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee
Q psy7769 155 SLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV 229 (355)
Q Consensus 155 S~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~ 229 (355)
+.+....|. +.+|.+|||+|||+|..+..++... ..+|+|+|+++.++ +++|++ . .+. ..+.+...|. .
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~--~--~~~~~~~~~~~~~~-~ 179 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAE--L--NGVELNVYLPQGDL-K 179 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH--H--cCCCceEEEccCCC-C
Confidence 444444443 5689999999999998887766543 35799999999999 788887 3 233 3344433332 1
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|.-.+... .. .+..++..+.++|||||+++.|.... +...-+...+++
T Consensus 180 fD~Vvani~----------~~------~~~~l~~~~~~~LkpgG~lilsgi~~---~~~~~v~~~l~~ 228 (250)
T PRK00517 180 ADVIVANIL----------AN------PLLELAPDLARLLKPGGRLILSGILE---EQADEVLEAYEE 228 (250)
T ss_pred cCEEEEcCc----------HH------HHHHHHHHHHHhcCCCcEEEEEECcH---hhHHHHHHHHHH
Confidence 333321111 01 12267899999999999999986543 334444445543
No 82
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.48 E-value=3.9e-07 Score=82.85 Aligned_cols=108 Identities=9% Similarity=-0.102 Sum_probs=70.0
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV- 229 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~- 229 (355)
..+......+.+.++.+|||+|||.|..+..+++.. ..|+|+|+++.++ ++++.. . .+.. +.+...|...
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~--~--~~~~-v~~~~~d~~~~ 89 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKA--R--ENLP-LRTDAYDINAA 89 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHH--H--hCCC-ceeEeccchhc
Confidence 444455566676677899999999999999999864 6899999999999 666555 2 2332 4454455322
Q ss_pred -----eecccCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 230 -----VYSTCSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.|..++..- +++ ... ....+++.+.++|||||+++..+
T Consensus 90 ~~~~~fD~I~~~~~------~~~~~~~------~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 90 ALNEDYDFIFSTVV------FMFLQAG------RVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred cccCCCCEEEEecc------cccCCHH------HHHHHHHHHHHHhCCCcEEEEEE
Confidence 222221100 111 111 12278999999999999966554
No 83
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.47 E-value=3.5e-07 Score=87.78 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=74.1
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYST 233 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaP 233 (355)
.....++++||++|||++||-|+.+..+|+.. +.+|+++.+|+... +++.+++ .|. ..+++...|...++.+
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~----~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIRE----AGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHC----STSSSTEEEEES-GGG---S
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHh----cCCCCceEEEEeeccccCCC
Confidence 55667789999999999999999999999985 37999999999999 8888873 344 4578888887543332
Q ss_pred cCCCCCccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
- ++- ++-+.+... .+....++.+.++|||||+++.-+++.
T Consensus 128 f-------D~I--vSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 128 F-------DRI--VSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp --------SEE--EEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred C-------CEE--EEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 1 111 111223333 233478999999999999998776665
No 84
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.46 E-value=1.1e-06 Score=84.63 Aligned_cols=113 Identities=12% Similarity=-0.039 Sum_probs=75.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecc-----------eeee
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGG-----------SVVY 231 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da-----------~~lD 231 (355)
++.+|||+|||+|..++.++......+|+|+|+|+.++ +++|+++ .+.. ++.++.+|. ...+
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~----~~~~~~v~~~~~d~~~~~~~~~fDlIvsN 189 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK----NQLEHRVEFIQSNLFEPLAGQKIDIIVSN 189 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----cCCCCcEEEEECchhccCcCCCccEEEEC
Confidence 33699999999999999999887668999999999999 8888873 2332 366665543 3366
Q ss_pred cccCCCCCcc-CCc-cccchHHH-H----hhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 232 STCSLSPIQN-DGV-VHMSLKRI-W----EETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 232 aPCSgsG~t~-~~~-l~~~~~~l-~----~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
||.....-.. ... +++.|... . .+.....++..+.++|+|||.+++-++..
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 6763322100 001 12222110 0 11122289999999999999999887753
No 85
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.46 E-value=7.3e-07 Score=87.26 Aligned_cols=139 Identities=13% Similarity=0.026 Sum_probs=82.7
Q ss_pred ccCCCCCCCCcceeeEEEe-chhcHHH----HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHh
Q psy7769 133 SEFPSPKRGVTGVFNYYCM-DGASLLP----VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LAL 206 (355)
Q Consensus 133 ~~~p~~~~g~~~~~~~~~Q-D~aS~l~----~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~ 206 (355)
..+.++++|...+.+|.+- +-+|-+. ...+++.+|.+|||+|||+|..+..++... ...|+++|.|+.++ -.+
T Consensus 83 ~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~ 161 (314)
T TIGR00452 83 MALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFE 161 (314)
T ss_pred HhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHH
Confidence 3455666665444444431 1223322 233467789999999999999988887654 35799999999887 222
Q ss_pred hccccccccCcceEEEEEeccee------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 207 NIRPYDTVLDIHALKLVKVGGSV------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 207 ~l~r~~~~~g~~~v~~~~~Da~~------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.++ ++.....++.+...|... +|.-+| ..-+.........|+++.+.|||||.||.+|.
T Consensus 162 ~~~--~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s-------------~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 162 AVR--KLLDNDKRAILEPLGIEQLHELYAFDTVFS-------------MGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred HHH--HHhccCCCeEEEECCHHHCCCCCCcCEEEE-------------cchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 222 100112344555444322 344432 11122222333789999999999999999987
Q ss_pred CCCCCCC
Q psy7769 281 SLSPIQN 287 (355)
Q Consensus 281 Sl~~~EN 287 (355)
.+...+|
T Consensus 227 ~i~g~~~ 233 (314)
T TIGR00452 227 VIDGDLN 233 (314)
T ss_pred EecCccc
Confidence 7655443
No 86
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.45 E-value=4.1e-07 Score=70.94 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=61.5
Q ss_pred eeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCccccc
Q psy7769 171 LDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMS 248 (355)
Q Consensus 171 LD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~l~~~ 248 (355)
||++||+|..+..+++. ....|+++|+++.++ ++++.. . . ++.+...|...+..|-. +. ++.+.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~--~--~---~~~~~~~d~~~l~~~~~----sf--D~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK--N--E---GVSFRQGDAEDLPFPDN----SF--DVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT--T--S---TEEEEESBTTSSSS-TT-----E--EEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc--c--c---CchheeehHHhCccccc----cc--ccccc
Confidence 89999999999999988 558999999999999 666666 2 1 23477777765433310 00 01122
Q ss_pred hHHHHhhhhHHHHHHHHHhhccCCcEEEE
Q psy7769 249 LKRIWEETGCEIEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 249 ~~~l~~l~~lQ~lL~~A~~~LkpGG~lVY 277 (355)
..-+......+.+++++.+.|||||++++
T Consensus 67 ~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 67 NSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 22222223344899999999999999985
No 87
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.44 E-value=8.9e-07 Score=85.88 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
++.+|.++||+.+||+++|.||.|..++..++ .++|+|+|.++.++ +++++.
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 34566789999999999999999999999874 59999999999999 665554
No 88
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.43 E-value=1.1e-06 Score=88.15 Aligned_cols=105 Identities=13% Similarity=0.001 Sum_probs=73.3
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV---- 230 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l---- 230 (355)
..+..+++++|++|||+|||+|+.+.++++.. ..+|+++|+|+.++ +++++. . . ++.+...|...+
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~----l-~v~~~~~D~~~l~~~f 229 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--G----L-PVEIRLQDYRDLNGQF 229 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--c----C-eEEEEECchhhcCCCC
Confidence 44566778999999999999999999998765 36899999999999 666665 2 1 256666665432
Q ss_pred ecccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
|...| ..-+.... ....+++.+.++|||||+++.++.+.
T Consensus 230 D~Ivs-------------~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 230 DRIVS-------------VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CEEEE-------------eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 22211 11111111 12278999999999999999976543
No 89
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.38 E-value=3.6e-06 Score=76.43 Aligned_cols=107 Identities=11% Similarity=0.063 Sum_probs=72.8
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-----
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----- 229 (355)
....+...++.+|||+|||+|..+..++..... ++++++|+++..+ +++++. ...++.+...|...
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE------LPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc------cCCCceEEecchhcCCCCC
Confidence 344445668999999999999999999887754 7999999999988 555543 11245666666543
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+|.-.+..+ +........+|+++.++|+|||+++..+.+..
T Consensus 105 ~~~D~i~~~~~-------------~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 105 NSFDAVTIAFG-------------LRNVTDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred CcEEEEEEeee-------------eCCcccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 222221111 11112233789999999999999998776643
No 90
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.37 E-value=2.2e-06 Score=84.10 Aligned_cols=116 Identities=16% Similarity=0.043 Sum_probs=72.2
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHH-hhccccccccCcceEEEEEecceeeecccC
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLA-LNIRPYDTVLDIHALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~-~~l~r~~~~~g~~~v~~~~~Da~~lDaPCS 235 (355)
.+...+.+.+|.+|||+|||+|..+..++... ...|+++|.|+.++.+ +... .+.....++.+...|...+..+-
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~--~~~~~~~~i~~~~~d~e~lp~~~- 188 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVR--KLLGNDQRAHLLPLGIEQLPALK- 188 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHH--HhcCCCCCeEEEeCCHHHCCCcC-
Confidence 33445666789999999999999999998874 3579999999987721 1111 10011245777777754332110
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
. .++.++...+........+|+++.+.|+|||.+|.+|-.+
T Consensus 189 ----~--FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 189 ----A--FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred ----C--cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 0 0111111112222233378999999999999999987543
No 91
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.36 E-value=1.2e-06 Score=87.04 Aligned_cols=60 Identities=15% Similarity=0.048 Sum_probs=45.1
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
..++++.++ .|||++||.|..|+.+|... .+|+|+|+++..+ +++|++ . .++.|+++...
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~--~--N~i~n~~f~~~ 251 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAK--L--NGIDNVEFIRG 251 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHH--H--TT--SEEEEE-
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHH--H--cCCCcceEEEe
Confidence 344566666 89999999999999999876 6899999999999 889988 3 46778888754
No 92
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=2.5e-06 Score=81.98 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=83.5
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~lDa 232 (355)
-+.+.-|+++||++|||++||-|+.+..+|+.. ..+|+++++|++.. ++++++ . .|.. ++++...|-+.++-
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~--~--~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIA--A--RGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHH--H--cCCCcccEEEecccccccc
Confidence 355667789999999999999999999999886 48999999999999 777777 3 4554 78887777655333
Q ss_pred ccCCCCCccCCccccchHHHHhhhh--HHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETG--CEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~--lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+. |+- -+-+.++.... ....++.+.+.|+|||+++.-|=+-..
T Consensus 137 ~f-------DrI--vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 137 PF-------DRI--VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred cc-------cee--eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 31 111 01122333333 227899999999999999987665544
No 93
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.31 E-value=3e-06 Score=82.25 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=70.9
Q ss_pred CCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-eecccCCCCCc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-VYSTCSLSPIQ 240 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-lDaPCSgsG~t 240 (355)
.++.+|||+|||+|.||..+++.+. ..+++++|+|+.++ +++++.+ . .++ -++..+++|... ++.+... . .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~-~-~p~-~~v~~i~gD~~~~~~~~~~~-~-~ 136 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA-D-YPQ-LEVHGICADFTQPLALPPEP-A-A 136 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh-h-CCC-ceEEEEEEcccchhhhhccc-c-c
Confidence 4678999999999999999998764 47899999999999 6666651 1 112 246677888654 2222110 0 0
Q ss_pred cCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+..+.|.-..+..+. ....+|+.+.+.|+|||.++...=+.
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 0110111100011111 12278999999999999999865444
No 94
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.31 E-value=9.1e-07 Score=81.27 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=64.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
.++|+.|+||+||-|..++.+|.......|+|+|+++..+ |++|++ . .+. ..+.++++|+..+-... .
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~--l--Nkv~~~i~~~~~D~~~~~~~~-----~ 169 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIR--L--NKVENRIEVINGDAREFLPEG-----K 169 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHH--H--TT-TTTEEEEES-GGG---TT------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHH--H--cCCCCeEEEEcCCHHHhcCcc-----c
Confidence 6789999999999999999999865557899999999999 999998 3 233 45788899986522111 1
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEE
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVY 277 (355)
.++-+.--|.... +.|..|..++++||.+-|
T Consensus 170 ~drvim~lp~~~~------~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 170 FDRVIMNLPESSL------EFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp EEEEEE--TSSGG------GGHHHHHHHEEEEEEEEE
T ss_pred cCEEEECChHHHH------HHHHHHHHHhcCCcEEEC
Confidence 1211110010000 458899999999999987
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.31 E-value=4.2e-06 Score=85.78 Aligned_cols=118 Identities=14% Similarity=-0.019 Sum_probs=77.5
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
.......+.+.++.+|||+|||+|..+..++... .+|+|+|+++.++ ...... . ...++.+++.|+...+.|
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--~---~~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--G---HYKNVKFMCADVTSPDLN 98 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--c---cCCceEEEEecccccccC
Confidence 3444556667788899999999999999999874 6899999999998 322222 1 235678888887543333
Q ss_pred cCCCCCccCCccccchHHHHhhhh--HHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETG--CEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~--lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
... ..-++.|...-+..+.. +.++|.++.+.|||||.+++...++.
T Consensus 99 ~~~----~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 99 ISD----GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred CCC----CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 310 01112222222222222 23789999999999999998754443
No 96
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.31 E-value=3.4e-06 Score=81.36 Aligned_cols=126 Identities=15% Similarity=0.023 Sum_probs=76.9
Q ss_pred hhcHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecc
Q psy7769 153 GASLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGG 227 (355)
Q Consensus 153 ~aS~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da 227 (355)
+...++..+|. ..+|.+|||+|||+|..+..++... ..+|+|+|+++.++ +++|+. . .+.. .+.+...|.
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~--~--n~~~~~~~~~~~~~ 218 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAE--L--NQVSDRLQVKLIYL 218 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH--H--cCCCcceEEEeccc
Confidence 55556555553 5689999999999999888777653 46899999999999 788877 3 2322 234443331
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
. +.+ ...-++.+..- + ...+.+++.++.++|||||+++.|.... +....|..++++
T Consensus 219 ~--~~~------~~~fDlVvan~-~--~~~l~~ll~~~~~~LkpgG~li~sgi~~---~~~~~v~~~~~~ 274 (288)
T TIGR00406 219 E--QPI------EGKADVIVANI-L--AEVIKELYPQFSRLVKPGGWLILSGILE---TQAQSVCDAYEQ 274 (288)
T ss_pred c--ccc------CCCceEEEEec-C--HHHHHHHHHHHHHHcCCCcEEEEEeCcH---hHHHHHHHHHHc
Confidence 1 000 00011111000 0 0112278899999999999999987542 334444555543
No 97
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2.7e-06 Score=82.15 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=86.1
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE-
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK- 224 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~- 224 (355)
+---|.+|.+.+.-|...++.+|||+|||-|-.++.+|+..+..+|+.+|++...+ .++|++ . .+.++..+..
T Consensus 140 ~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~--~--N~~~~~~v~~s 215 (300)
T COG2813 140 RDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA--A--NGVENTEVWAS 215 (300)
T ss_pred CCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH--H--cCCCccEEEEe
Confidence 33469999999999998888899999999999999999988779999999999999 888887 3 2333322222
Q ss_pred ---------ecceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 225 ---------VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 225 ---------~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|.....||.. -| .-....--|+|+..|.+.|++||.|-...=..
T Consensus 216 ~~~~~v~~kfd~IisNPPfh-~G------------~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 216 NLYEPVEGKFDLIISNPPFH-AG------------KAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred cccccccccccEEEeCCCcc-CC------------cchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 33344555642 11 11111112289999999999999988765533
No 98
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.9e-06 Score=87.64 Aligned_cols=106 Identities=19% Similarity=0.135 Sum_probs=78.7
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc--------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-------- 227 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-------- 227 (355)
+...++..++++|||+-||-|++|+++|... .+|+++|+++..+ +++|++ . .+..|+.+..+|+
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~--~--n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAA--A--NGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHH--H--cCCCcEEEEeCCHHHHhhhcc
Confidence 3455667889999999999999999999665 7999999999999 899998 4 5677787765544
Q ss_pred -------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 -------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 -------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
..||||=+|.+- ++++...+ ++| -+|||..| |..-..+-++.
T Consensus 359 ~~~~~d~VvvDPPR~G~~~--------------------~~lk~l~~-~~p-~~IvYVSC------NP~TlaRDl~~ 407 (432)
T COG2265 359 EGYKPDVVVVDPPRAGADR--------------------EVLKQLAK-LKP-KRIVYVSC------NPATLARDLAI 407 (432)
T ss_pred ccCCCCEEEECCCCCCCCH--------------------HHHHHHHh-cCC-CcEEEEeC------CHHHHHHHHHH
Confidence 349999877661 33444444 455 38999999 44555544443
No 99
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.29 E-value=3.6e-06 Score=77.03 Aligned_cols=101 Identities=13% Similarity=0.031 Sum_probs=67.3
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
..+.+|||+|||+|..+..++..+...+++++|+++.++ +++++. .++.++..|......+- ..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~------~~ 98 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLPLED------SS 98 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCCCCC------Cc
Confidence 345799999999999999999887678899999999988 444433 24566666654322110 00
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
-++.+...-+........+|.++.++|+|||.+++++
T Consensus 99 fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 99 FDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred eeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 0111111112222233478999999999999999875
No 100
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.27 E-value=5.4e-06 Score=76.18 Aligned_cols=101 Identities=13% Similarity=0.012 Sum_probs=70.5
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCccCCcc
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQNDGVV 245 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~~~~l 245 (355)
+|||+|||.|+.+..+++..+...|+++|+|+..+ +++++. . .+. .++.+...|.... |.. + . -++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~--~--~gl~~~i~~~~~d~~~~--~~~--~-~--fD~ 70 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIR--A--LGLQGRIRIFYRDSAKD--PFP--D-T--YDL 70 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--h--cCCCcceEEEecccccC--CCC--C-C--CCE
Confidence 79999999999999999877557899999999998 777776 2 233 4577877776322 221 1 1 112
Q ss_pred ccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 246 HMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 246 ~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+...-+........+++.+.++|||||.++.++.
T Consensus 71 I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 71 VFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred eehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 22333333333333889999999999999998764
No 101
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.26 E-value=2.6e-06 Score=83.74 Aligned_cols=106 Identities=16% Similarity=0.089 Sum_probs=76.4
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE------------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK------------ 224 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~------------ 224 (355)
+-+..+++|+.|||=.||+||....+.-++ .+++++|++..|+ ++.|++ .| ++....+..
T Consensus 190 VNLa~v~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~--~y--~i~~~~~~~~~Da~~lpl~~~ 263 (347)
T COG1041 190 VNLARVKRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLE--YY--GIEDYPVLKVLDATNLPLRDN 263 (347)
T ss_pred HHHhccccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhh--hh--CcCceeEEEecccccCCCCCC
Confidence 445568999999999999999887776665 8999999999999 999999 43 333333333
Q ss_pred -ecceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 225 -VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 225 -~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
.|+...|||- |. .. ... ...+..|- +.|+.+.+.||+||++||.+-
T Consensus 264 ~vdaIatDPPY---Gr---st-~~~---~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPY---GR---ST-KIK---GEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCC---Cc---cc-ccc---cccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3444477775 21 11 001 11133455 899999999999999999876
No 102
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.26 E-value=8.5e-06 Score=76.41 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=79.2
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~- 229 (355)
.++...++...++.+|||+|+|.|.-++.++..+. .|+|+++|+++.++ +++|++ . .|. .+++++.+|+..
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~--~--~gl~~~i~~~~gda~~~ 132 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK--K--AGVDHKINFIQSDALSA 132 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEccHHHH
Confidence 34445555666788999999999999999988654 58999999999999 889998 3 344 568899998854
Q ss_pred eecccCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 VYSTCSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
++--++... ...-++.| ...+ ......+..++++|+|||.|+.-.+-+
T Consensus 133 L~~l~~~~~-~~~fD~VfiDa~k----~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 133 LDQLLNNDP-KPEFDFAFVDADK----PNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHHHHhCCC-CCCCCEEEECCCH----HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 111111000 00111111 1110 112277899999999999999765543
No 103
>PRK06922 hypothetical protein; Provisional
Probab=98.26 E-value=4.9e-06 Score=87.95 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=75.1
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------- 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------- 229 (355)
...++..+|.+|||+|||+|..+..+++..+.+.|+|+|+|+.++ ++++.. . .+ .++.++.+|+..
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~--~--~g-~~ie~I~gDa~dLp~~fed 485 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQ--N--EG-RSWNVIKGDAINLSSSFEK 485 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh--h--cC-CCeEEEEcchHhCccccCC
Confidence 344556678999999999999888888877678999999999999 666655 2 12 356777777643
Q ss_pred --eecccCCCCCccCCccccc----h--HHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 230 --VYSTCSLSPIQNDGVVHMS----L--KRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~----~--~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+|.-.+... ++|- + ..-.....+.++|+++++.|||||+++...-++.
T Consensus 486 eSFDvVVsn~v------LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 486 ESVDTIVYSSI------LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred CCEEEEEEchH------HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 222221110 1100 0 0000112233899999999999999999754443
No 104
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.26 E-value=3e-06 Score=84.73 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=65.4
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-------------
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG------------- 227 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da------------- 227 (355)
+..++.+|||++||.|..++.+|... ..|+|+|+++..+ +++|++ . .+..++.+...|+
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~--~--~~~~~~~~~~~d~~~~~~~~~~~~D~ 303 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQ--M--LGLDNLSFAALDSAKFATAQMSAPEL 303 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEECCHHHHHHhcCCCCCE
Confidence 34567899999999999999998653 6899999999999 888887 3 3455677766654
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+|||=.|.+ + +++.... .++| +.+||+.|.-
T Consensus 304 vi~DPPr~G~~----------~----------~~l~~l~-~~~p-~~ivyvsc~p 336 (374)
T TIGR02085 304 VLVNPPRRGIG----------K----------ELCDYLS-QMAP-KFILYSSCNA 336 (374)
T ss_pred EEECCCCCCCc----------H----------HHHHHHH-hcCC-CeEEEEEeCH
Confidence 23777753322 1 2333333 3678 4899999953
No 105
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.25 E-value=1.6e-06 Score=81.11 Aligned_cols=97 Identities=20% Similarity=0.126 Sum_probs=69.1
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe-------cceeeecccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV-------GGSVVYSTCS 235 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~-------Da~~lDaPCS 235 (355)
-+|.+|||++||-|..+..||+++ ..|+|+|.++..+ ++.... . .+.. +..... ++...|+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~--e--~gv~-i~y~~~~~edl~~~~~~FDvV-- 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHAL--E--SGVN-IDYRQATVEDLASAGGQFDVV-- 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhh--h--cccc-ccchhhhHHHHHhcCCCccEE--
Confidence 479999999999999999999987 8999999999999 554444 2 1211 111111 11112322
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
-.-+-+.+..+-+.+++++.+++||||.++.||=-
T Consensus 129 -----------~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 129 -----------TCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred -----------EEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 22455666666668999999999999999999955
No 106
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.23 E-value=5.9e-06 Score=79.53 Aligned_cols=104 Identities=11% Similarity=-0.056 Sum_probs=66.2
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG 238 (355)
++...++.+|||+|||.|..+..++..+ .+|+|+|+|+.++ +++++. . .+. ++.+...|....+.+-
T Consensus 115 ~~~~~~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~--~--~~l-~v~~~~~D~~~~~~~~---- 183 (287)
T PRK12335 115 AVQTVKPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAE--K--ENL-NIRTGLYDINSASIQE---- 183 (287)
T ss_pred HhhccCCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH--H--cCC-ceEEEEechhcccccC----
Confidence 3333344599999999999999998864 7899999999999 777766 2 233 5666666653311111
Q ss_pred CccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEE
Q psy7769 239 IQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.. ++.+...-+..+ ...+.+++++.+.|+|||.+++.
T Consensus 184 -~f--D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 184 -EY--DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred -Cc--cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 00 111111111111 12338899999999999996653
No 107
>KOG1270|consensus
Probab=98.22 E-value=2.9e-06 Score=80.29 Aligned_cols=99 Identities=13% Similarity=-0.080 Sum_probs=71.7
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ce----EEEEEeccee----ee
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HA----LKLVKVGGSV----VY 231 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~----v~~~~~Da~~----lD 231 (355)
.|..|.+|||++||.|-.|.+||.++ ..|+++|+++.++ +++... .. +-. .+ +.+...|+.. .|
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~-~d--P~~~~~~~y~l~~~~~~~E~~~~~fD 160 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKK-MD--PVLEGAIAYRLEYEDTDVEGLTGKFD 160 (282)
T ss_pred cccCCceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhh-cC--chhccccceeeehhhcchhhcccccc
Confidence 44568899999999999999999987 7899999999999 555422 11 111 11 2233333221 33
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+.- ..+-+.+...+|+++....++|||||+++.||
T Consensus 161 aVv-------------csevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 161 AVV-------------CSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eee-------------eHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 331 25667787888899999999999999999998
No 108
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.22 E-value=3.9e-06 Score=83.00 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=66.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------eecccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCS 235 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCS 235 (355)
.++.+|||+|||+|..+..+++......|+++|.++.++ ++++.. ..++.++..|+.. .|.-++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhCCCCCCceeEEEE
Confidence 478899999999999998888876557899999999998 555433 1345677777643 222221
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
...+......+.+|+++.++|||||+++...
T Consensus 185 -------------~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 185 -------------AGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred -------------cChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 1112222223378999999999999998753
No 109
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.21 E-value=3.4e-06 Score=84.67 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=68.8
Q ss_pred HHHHhhCCC-CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc------
Q psy7769 157 LPVLALNIR-PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG------ 227 (355)
Q Consensus 157 l~~~~L~~~-pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da------ 227 (355)
+++..+... ++.+|||++||+|..++.+|...+...|+++|+++..+ +++|++ . .+..++.+.+.|+
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~--~--N~~~~~~v~~~Da~~~l~~ 122 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLE--L--NGLENEKVFNKDANALLHE 122 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH--H--hCCCceEEEhhhHHHHHhh
Confidence 334444433 46799999999999999998765445899999999999 888887 3 3444555555553
Q ss_pred ------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 228 ------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 228 ------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..+||| |++. ..|..|++.+++||.|.+ ||+
T Consensus 123 ~~~fD~V~lDP~--Gs~~--------------------~~l~~al~~~~~~gilyv-SAt 159 (382)
T PRK04338 123 ERKFDVVDIDPF--GSPA--------------------PFLDSAIRSVKRGGLLCV-TAT 159 (382)
T ss_pred cCCCCEEEECCC--CCcH--------------------HHHHHHHHHhcCCCEEEE-Eec
Confidence 337776 4331 568888999999755555 454
No 110
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=3.5e-06 Score=83.07 Aligned_cols=103 Identities=22% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce-EEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA-LKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~-v~~~~~Da~~lDaPCSgsG~t 240 (355)
..+|++||||.||-|..|+.+|...... |+|+|+++..+ |++|++ . .+..+ +..+++|+..+.+.- | .
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~--L--N~v~~~v~~i~gD~rev~~~~---~-~ 256 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIR--L--NKVEGRVEPILGDAREVAPEL---G-V 256 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHH--h--cCccceeeEEeccHHHhhhcc---c-c
Confidence 4579999999999999999999886544 99999999999 999998 3 34444 789999998755541 1 2
Q ss_pred cCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.++-+.-.+. .. +.+..|.+.++.||.|.|-+-.-
T Consensus 257 aDrIim~~p~-------~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 257 ADRIIMGLPK-------SAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred CCEEEeCCCC-------cchhhHHHHHHHhhcCcEEEEEeccc
Confidence 3332221111 11 67889999999999999875544
No 111
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.20 E-value=1.9e-06 Score=69.57 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=58.7
Q ss_pred EeeecccCcchHHHHHHhc---CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc
Q psy7769 170 VLDMCAAPGGKTLVALQTL---YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV 244 (355)
Q Consensus 170 VLD~CAgPGgKT~~la~~~---~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~ 244 (355)
|||+|||+|..+..++... .+.+++++|+|+.++ ++++.. . .+. ++++++.|...++.+= ..-+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~--~--~~~-~~~~~~~D~~~l~~~~------~~~D 69 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS--E--DGP-KVRFVQADARDLPFSD------GKFD 69 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH--H--TTT-TSEEEESCTTCHHHHS------SSEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch--h--cCC-ceEEEECCHhHCcccC------CCee
Confidence 7999999999999999876 237999999999999 777775 2 232 5788888886532110 0000
Q ss_pred cccchHH-HHhhhhHH--HHHHHHHhhccCCc
Q psy7769 245 VHMSLKR-IWEETGCE--IEIKHALKLVKVGG 273 (355)
Q Consensus 245 l~~~~~~-l~~l~~lQ--~lL~~A~~~LkpGG 273 (355)
+.+.... +..+..-+ .++++..+++||||
T Consensus 70 ~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 70 LVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 1111101 22222222 89999999999998
No 112
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.19 E-value=7.1e-06 Score=82.98 Aligned_cols=133 Identities=13% Similarity=0.042 Sum_probs=80.6
Q ss_pred HHHHHhhC-CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-----
Q psy7769 156 LLPVLALN-IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG----- 227 (355)
Q Consensus 156 ~l~~~~L~-~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da----- 227 (355)
.++..++. +.++.+|||+|||+|..+..++...+..+|+|+|+|+.++ +++|++ . .+. ++.++++|.
T Consensus 240 ~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~--~--~g~-rV~fi~gDl~e~~l 314 (423)
T PRK14966 240 HLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA--D--LGA-RVEFAHGSWFDTDM 314 (423)
T ss_pred HHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCC-cEEEEEcchhcccc
Confidence 34444443 4567799999999999999988776668999999999999 888887 3 232 466665554
Q ss_pred --------eeeecccCCCCCcc-CCc-cccchHHHH----hhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHH
Q psy7769 228 --------SVVYSTCSLSPIQN-DGV-VHMSLKRIW----EETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 228 --------~~lDaPCSgsG~t~-~~~-l~~~~~~l~----~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~ 292 (355)
...+||-...+-.. ... +++.|.... .-..+- ++++.+.+.|+|||.+++-. ...+ .+-|.
T Consensus 315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi---G~~Q-~e~V~ 390 (423)
T PRK14966 315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH---GFDQ-GAAVR 390 (423)
T ss_pred ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE---CccH-HHHHH
Confidence 22555543322100 000 122221110 000112 88999999999999987533 2223 34445
Q ss_pred HHHHh
Q psy7769 293 MSLKR 297 (355)
Q Consensus 293 ~~L~~ 297 (355)
.++++
T Consensus 391 ~ll~~ 395 (423)
T PRK14966 391 GVLAE 395 (423)
T ss_pred HHHHH
Confidence 55543
No 113
>PLN02476 O-methyltransferase
Probab=98.18 E-value=1.5e-05 Score=76.64 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=82.7
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
.....++...++......+||++|++.|.-|+.+|..++ .|+|+++|.++.+. +++|++ + .|. ++|+++.+|
T Consensus 103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~--~--aGl~~~I~li~Gd 178 (278)
T PLN02476 103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE--L--AGVSHKVNVKHGL 178 (278)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEcC
Confidence 344455566666666778999999999999999998764 58999999999999 889998 4 354 478898888
Q ss_pred cee-eecccCCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 227 GSV-VYSTCSLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 227 a~~-lDaPCSgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+.. +.--+ ..|....-++. .+.++ .+....++.++++|+|||.||.=..-++
T Consensus 179 A~e~L~~l~-~~~~~~~FD~VFIDa~K----~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 179 AAESLKSMI-QNGEGSSYDFAFVDADK----RMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred HHHHHHHHH-hcccCCCCCEEEECCCH----HHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 754 11101 00000011111 11110 1122778999999999999998655443
No 114
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=9.3e-06 Score=73.58 Aligned_cols=109 Identities=17% Similarity=0.044 Sum_probs=76.0
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee--------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------- 229 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------- 229 (355)
++.+.-.|..|+|+|||+|..++..+.++ ..+|+|+|+++..+ +++|.. + ...++.++..|...
T Consensus 39 ~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~--~---l~g~v~f~~~dv~~~~~~~dtv 112 (198)
T COG2263 39 YLRGDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAE--E---LLGDVEFVVADVSDFRGKFDTV 112 (198)
T ss_pred HHcCCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHH--h---hCCceEEEEcchhhcCCccceE
Confidence 33355678899999999999888776654 57999999999999 888988 3 23468888887754
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.+||. | +.++| .++ ..|..|++. +.+||| ++..-+.+-+.++.+.
T Consensus 113 imNPPF---G-~~~rh----aDr--------~Fl~~Ale~----s~vVYs---iH~a~~~~f~~~~~~~ 158 (198)
T COG2263 113 IMNPPF---G-SQRRH----ADR--------PFLLKALEI----SDVVYS---IHKAGSRDFVEKFAAD 158 (198)
T ss_pred EECCCC---c-ccccc----CCH--------HHHHHHHHh----hheEEE---eeccccHHHHHHHHHh
Confidence 56664 3 22222 111 346677776 478885 5666677777766654
No 115
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.15 E-value=2.1e-06 Score=78.51 Aligned_cols=121 Identities=9% Similarity=0.062 Sum_probs=82.8
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc-
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV- 244 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~- 244 (355)
..+||+|||-|...+++|...+...++|+|++..++ +.+.+. . .+..|+.++++|+..+-.-+-..| +.++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~--~--~~l~Nv~~~~~da~~~l~~~~~~~-~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAE--K--RGLKNVRFLRGDARELLRRLFPPG-SVDRIY 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHH--H--HTTSSEEEEES-CTTHHHHHSTTT-SEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHH--h--hcccceEEEEccHHHHHhhcccCC-chheEE
Confidence 389999999999999999998878999999999999 555565 3 477899999999876111110001 11111
Q ss_pred cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhh
Q psy7769 245 VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIW 299 (355)
Q Consensus 245 l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~ 299 (355)
+. |-..+-.+.--++ ..|....+.|+|||.|...| .++....+.++...
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T------D~~~y~~~~~~~~~ 147 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT------DVEEYAEWMLEQFE 147 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE------S-HHHHHHHHHHHH
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe------CCHHHHHHHHHHHH
Confidence 22 3333333333344 88999999999999999988 77788888887664
No 116
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.14 E-value=9.5e-07 Score=70.78 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=50.9
Q ss_pred eeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce---EEEEEecce------eeecccCCCCC
Q psy7769 171 LDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA---LKLVKVGGS------VVYSTCSLSPI 239 (355)
Q Consensus 171 LD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~---v~~~~~Da~------~lDaPCSgsG~ 239 (355)
||++||+|..+..+++.....+++++|+|+.++ +++++. . .+..+ +.+...|.. ..|.-.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~--- 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLA--E--LGNDNFERLRFDVLDLFDYDPPESFDLVVAS--- 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHH--H--CT---EEEEE--SSS---CCC----SEEEEE---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh--h--cCCcceeEEEeecCChhhcccccccceehhh---
Confidence 799999999999999887668999999999999 666666 2 12222 222222221 13333211
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEE
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSV 275 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~l 275 (355)
.-+..+..++.+|+++.++|||||.|
T Consensus 74 ----------~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 ----------NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -----------TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ----------hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 11122233448899999999999986
No 117
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.12 E-value=1.7e-05 Score=73.74 Aligned_cols=123 Identities=19% Similarity=0.114 Sum_probs=81.4
Q ss_pred cHHHHHhh------CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 155 SLLPVLAL------NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L------~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|-|++.++ .++||.+||-++||+|..-.|++.... .|.|+|+|.++... |-...++ -+||..+-.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~------R~NIiPIl~ 129 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK------RPNIIPILE 129 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH------STTEEEEES
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc------CCceeeeec
Confidence 44555443 367999999999999999999999886 69999999998766 4444441 256788888
Q ss_pred ccee----------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe--CCC-CCCCCHHHHH
Q psy7769 226 GGSV----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST--CSL-SPIQNDGVVH 292 (355)
Q Consensus 226 Da~~----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT--CSl-~~~ENE~vV~ 292 (355)
|++. ||.-..... .++ +.+-++.+|-.+||+||.++.+. -|+ ...+.+.|.+
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVa---------Qp~------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~ 194 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVA---------QPD------QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFA 194 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-S---------STT------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHH
T ss_pred cCCChHHhhcccccccEEEecCC---------ChH------HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHH
Confidence 8864 333321100 011 11145778889999999988763 334 5567778877
Q ss_pred HHHHhh
Q psy7769 293 MSLKRI 298 (355)
Q Consensus 293 ~~L~~~ 298 (355)
.-.++.
T Consensus 195 ~e~~~L 200 (229)
T PF01269_consen 195 EEVKKL 200 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 118
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.12 E-value=3.8e-06 Score=78.62 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=86.5
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc-
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV- 244 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~- 244 (355)
-.+|++|||.|...+++|+..+.-..+|+|+....+ +.+.+. . .++.|+.+++.||..+-.-+-.-| +.++-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~--~--~~l~Nlri~~~DA~~~l~~~~~~~-sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIK--E--LGLKNLRLLCGDAVEVLDYLIPDG-SLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHH--H--cCCCcEEEEcCCHHHHHHhcCCCC-CeeEEE
Confidence 489999999999999999998888999999999999 555565 3 466699999999987332221111 11111
Q ss_pred cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHH
Q psy7769 245 VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293 (355)
Q Consensus 245 l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~ 293 (355)
+. |...+-.++--+| ..|+...+.|+|||.|.+.| .|+...++
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT------D~~~y~e~ 172 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT------DNEEYFEW 172 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe------cCHHHHHH
Confidence 22 6555555555566 89999999999999999998 77777777
No 119
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1.3e-05 Score=77.81 Aligned_cols=125 Identities=17% Similarity=0.034 Sum_probs=80.8
Q ss_pred chhcHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce-EEEEEec
Q psy7769 152 DGASLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA-LKLVKVG 226 (355)
Q Consensus 152 D~aS~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~-v~~~~~D 226 (355)
.+...++..+|+ .++|.+|||++||+|-.++.++.++ ..+|+|+|+++..+ .++|++ . .+++. +.....+
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~--~--N~v~~~~~~~~~~ 220 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENAR--L--NGVELLVQAKGFL 220 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHH--H--cCCchhhhccccc
Confidence 466777777775 6799999999999999998888775 36899999999999 888888 3 23332 1111111
Q ss_pred ceeeecccCCCCCccCC-ccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 227 GSVVYSTCSLSPIQNDG-VVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 227 a~~lDaPCSgsG~t~~~-~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
. .+.+ .... ++.. ..-++..- ++...+.+++||||+++.|= +...+ +..|..++.
T Consensus 221 ~--~~~~------~~~~~DvIV----ANILA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~ 277 (300)
T COG2264 221 L--LEVP------ENGPFDVIV----ANILAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYE 277 (300)
T ss_pred c--hhhc------ccCcccEEE----ehhhHHHHHHHHHHHHHHcCCCceEEEEe--ehHhH-HHHHHHHHH
Confidence 1 1111 1100 0000 01123333 78888999999999999997 66666 444555553
No 120
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.11 E-value=1.8e-05 Score=73.24 Aligned_cols=111 Identities=7% Similarity=-0.133 Sum_probs=69.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc---------cCcceEEEEEecceeeecc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV---------LDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~---------~g~~~v~~~~~Da~~lDaP 233 (355)
.+|.+|||++||.|.-+..+|+.+ -.|+|+|+|+..+ +..... ..+. ....++++..+|...+++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENG-LTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcC-CCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 578899999999999999999875 5799999999998 322111 0000 0113577888887654432
Q ss_pred cCCCCCccCCccccchHHHHhhhh-H-HHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETG-C-EIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~-l-Q~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
..| .. +..|...-+..+.. . .+.+....++|||||++++.|-+..
T Consensus 110 --~~~-~f--D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 110 --DLG-PV--DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred --cCC-Cc--CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 111 10 11121111111111 1 1679999999999999888777653
No 121
>KOG2915|consensus
Probab=98.10 E-value=1e-05 Score=77.01 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=81.7
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~ 223 (355)
.|.-| ..++...|++.||.+||..+.|+|+.+..++..+. .|+|+.+|.+..|. +.+.++ . .++ .|+.++
T Consensus 89 ~Yt~D--ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr--~--hgi~~~vt~~ 162 (314)
T KOG2915|consen 89 LYTPD--IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR--E--HGIGDNVTVT 162 (314)
T ss_pred Eeccc--HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH--H--hCCCcceEEE
Confidence 45555 56888999999999999999999999999999874 59999999999999 777776 3 344 456665
Q ss_pred Eec--------------ceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHH
Q psy7769 224 KVG--------------GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDG 289 (355)
Q Consensus 224 ~~D--------------a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~ 289 (355)
.-| +..+|.|- |+ +.+-+|++.||.+|. --||++|- -+
T Consensus 163 hrDVc~~GF~~ks~~aDaVFLDlPa--------------Pw---------~AiPha~~~lk~~g~---r~csFSPC--IE 214 (314)
T KOG2915|consen 163 HRDVCGSGFLIKSLKADAVFLDLPA--------------PW---------EAIPHAAKILKDEGG---RLCSFSPC--IE 214 (314)
T ss_pred EeecccCCccccccccceEEEcCCC--------------hh---------hhhhhhHHHhhhcCc---eEEeccHH--HH
Confidence 444 33344443 33 457788889988874 12444442 24
Q ss_pred HHHHHHH
Q psy7769 290 VVHMSLK 296 (355)
Q Consensus 290 vV~~~L~ 296 (355)
+|++-++
T Consensus 215 Qvqrtce 221 (314)
T KOG2915|consen 215 QVQRTCE 221 (314)
T ss_pred HHHHHHH
Confidence 5555444
No 122
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.09 E-value=1.6e-05 Score=72.78 Aligned_cols=106 Identities=14% Similarity=-0.022 Sum_probs=70.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
..+.+|||+|||+|..+..+++.. ..++++|.++.++ +++++. . .+..++.+...|+... ++...+ .
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~--~--~~~~~~~~~~~d~~~~--~~~~~~---~ 112 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAK--K--DPLLKIEYRCTSVEDL--AEKGAK---S 112 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHH--H--cCCCceEEEeCCHHHh--hcCCCC---C
Confidence 358899999999999888887754 5799999999998 666665 2 2333466666665321 111000 1
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.++.+...-+......+.+|..+.+.|+|||.++.++|.
T Consensus 113 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 113 FDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred ccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 112222222333334448899999999999999998874
No 123
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.07 E-value=1e-05 Score=72.19 Aligned_cols=36 Identities=33% Similarity=0.217 Sum_probs=31.0
Q ss_pred CCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCch
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLL 201 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~ 201 (355)
.+.+|||+||||||+|..+++.. ..++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999876 3489999999987
No 124
>PLN03075 nicotianamine synthase; Provisional
Probab=98.06 E-value=2e-05 Score=76.48 Aligned_cols=105 Identities=12% Similarity=-0.038 Sum_probs=70.2
Q ss_pred CCCeEeeecccCcchHHHHHH--hcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQ--TLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~--~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
+..+|+|+|||||+.|+.++. ....++++++|+++.++ +++++.+ . .+. ++++|..+|+..+.. . .+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-~--~gL~~rV~F~~~Da~~~~~-~--l~-- 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-D--PDLSKRMFFHTADVMDVTE-S--LK-- 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-c--cCccCCcEEEECchhhccc-c--cC--
Confidence 678999999999988776543 45668999999999999 7777742 1 344 458999998854211 1 11
Q ss_pred cCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 241 NDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+-++.|.. .+-.. ...+++|++..+.|+|||.+++-+.
T Consensus 195 -~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 195 -EYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -CcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 11111111 11111 1222889999999999999999773
No 125
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.05 E-value=1.4e-05 Score=73.96 Aligned_cols=96 Identities=9% Similarity=0.034 Sum_probs=68.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.+-.+|.|++||||..|-.|++.-+.+.|+++|.|+.|+ +++++- ++.|..+|...--+.-.
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---------~~~f~~aDl~~w~p~~~------ 92 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---------DATFEEADLRTWKPEQP------ 92 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---------CCceecccHhhcCCCCc------
Confidence 4566799999999999999999998889999999999999 443332 35677777654222110
Q ss_pred CCccccchHHHHhhhhHH------HHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCE------IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ------~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.+-+...+.+| ++|.+.+..|.|||.|..----
T Consensus 93 -------~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 93 -------TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred -------cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 01133334444 7899999999999999875433
No 126
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.04 E-value=2.7e-05 Score=71.99 Aligned_cols=114 Identities=16% Similarity=-0.006 Sum_probs=71.7
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeeccc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTC 234 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPC 234 (355)
+....+.+.++.+|||+|||+|..+..++... ..|+++|.++..+ +++++. . .+. ++.+...|...+ +.
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~--~--~~~-~~~~~~~~~~~~--~~ 109 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHAL--E--SGL-KIDYRQTTAEEL--AA 109 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHH--H--cCC-ceEEEecCHHHh--hh
Confidence 44444456789999999999999998888764 6799999999998 666655 2 122 345554444321 11
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-..| . -++.+...-+........+|+.+.++|+|||+++.+++.-
T Consensus 110 ~~~~-~--fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 110 EHPG-Q--FDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred hcCC-C--ccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 0001 1 1111111112222233378999999999999999988753
No 127
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.03 E-value=2.7e-05 Score=81.02 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=75.6
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc-----------eeee
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG-----------SVVY 231 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da-----------~~lD 231 (355)
++.+|||+|||+|..++.++......+|+|+|+|+..+ +++|++ . .+. .++.++.+|. ...+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~--~--~~l~~~v~~~~~D~~~~~~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI--K--YEVTDRIQIIHSNWFENIEKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH--H--cCCccceeeeecchhhhCcCCCccEEEEC
Confidence 45789999999999999998876668999999999999 888887 3 233 3466666553 2245
Q ss_pred cccCCCCCc--cCCc-cccchHH-HH----hhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 232 STCSLSPIQ--NDGV-VHMSLKR-IW----EETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 232 aPCSgsG~t--~~~~-l~~~~~~-l~----~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
||-....-. .... +.+.|.. +. -+..+..++..+.++|+|||.+++. +.. .+.+. |..++.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~--~q~~~-v~~~~~ 282 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF--KQEEA-VTQIFL 282 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC--chHHH-HHHHHH
Confidence 554322100 0000 1122211 10 0111227999999999999999874 333 33334 444444
No 128
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.02 E-value=7.8e-05 Score=69.41 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=81.3
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEE-ecc
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVK-VGG 227 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~-~Da 227 (355)
..-.+...++......+||+++++.|.-|+.||..++ +|+|+++|+++++. +++|++ + .|. +.|+++. +|+
T Consensus 46 e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~--~--ag~~~~i~~~~~gda 121 (219)
T COG4122 46 ETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA--E--AGVDDRIELLLGGDA 121 (219)
T ss_pred hHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH--H--cCCcceEEEEecCcH
Confidence 3345666667777788999999999999999999876 79999999999999 999999 4 455 3366666 466
Q ss_pred eeeecccC-CCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 228 SVVYSTCS-LSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 228 ~~lDaPCS-gsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
.. .--. ..| +.+ +.| +.++ ....+.+..+.++|+|||.||.=.-.+.
T Consensus 122 l~--~l~~~~~~-~fD--liFIDadK----~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 122 LD--VLSRLLDG-SFD--LVFIDADK----ADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HH--HHHhccCC-Ccc--EEEEeCCh----hhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 32 2211 111 111 111 0000 0111779999999999999997666555
No 129
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.01 E-value=1.4e-05 Score=76.14 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=59.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCC---CcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYP---DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~---g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
.++.+|||+|||+|..+..++..... ..|+++|+|+.++ ++++.. ++.+..+|+..+ |.. .+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~---------~~~~~~~d~~~l--p~~-~~- 150 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP---------QVTFCVASSHRL--PFA-DQ- 150 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC---------CCeEEEeecccC--CCc-CC-
Confidence 45678999999999999999876532 3799999999998 443322 345666665432 210 00
Q ss_pred ccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 240 QNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 240 t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+.+--+. +.+ ..+++..+.|||||+++..+-
T Consensus 151 sfD~I~~~~~~----------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 151 SLDAIIRIYAP----------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ceeEEEEecCC----------CCHHHHHhhccCCCEEEEEeC
Confidence 0000000 111 235678889999999998764
No 130
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.99 E-value=1e-05 Score=73.33 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=59.0
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecce-------------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGS------------- 228 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~------------- 228 (355)
-+|.+|||+|||+|..++.++..+. .+|+.+|.++..+ +++|++. .+.. .+.++..|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~----l~~~~~~~v~~~d~~~~l~~~~~~~~~f 115 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEK----LGLEDKIRVIKGDAFKFLLKLAKKGEKF 115 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHH----HT-GGGEEEEESSHHHHHHHHHHCTS-E
T ss_pred cCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHH----hCCCcceeeeccCHHHHHHhhcccCCCc
Confidence 3789999999999999998877653 5899999999999 9999983 3443 4677766642
Q ss_pred ---eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHH--hhccCCcEEEE
Q psy7769 229 ---VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHAL--KLVKVGGSVVY 277 (355)
Q Consensus 229 ---~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~--~~LkpGG~lVY 277 (355)
.+|||-- .... .+++|.... .+|+++|.||.
T Consensus 116 DiIflDPPY~-------------~~~~-----~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 116 DIIFLDPPYA-------------KGLY-----YEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp EEEEE--STT-------------SCHH-----HHHHHHHHHHTTSEEEEEEEEE
T ss_pred eEEEECCCcc-------------cchH-----HHHHHHHHHHCCCCCCCEEEEE
Confidence 3888861 0100 123444444 78999877766
No 131
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.99 E-value=2.4e-05 Score=71.82 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=45.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.+|.+|||+|||+|..++.++... .++|+++|+++..+ +++|++ . .+..++.+++.|.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~--~--~~~~~v~~~~~D~ 111 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLA--T--LKAGNARVVNTNA 111 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHH--H--hCCCcEEEEEchH
Confidence 578899999999999998655443 37999999999998 888988 3 3455677766654
No 132
>PRK04457 spermidine synthase; Provisional
Probab=97.98 E-value=4.6e-05 Score=72.67 Aligned_cols=100 Identities=9% Similarity=-0.013 Sum_probs=71.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC-cceEEEEEeccee------------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD-IHALKLVKVGGSV------------ 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-~~~v~~~~~Da~~------------ 229 (355)
.++.+|||+|+|.|..+..++...+..+|+++|+++..+ +++++. . .+ .++++++.+|+..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~--~--~~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE--L--PENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC--C--CCCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 445689999999999999998877778999999999999 677665 2 22 3678888888753
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|+-- +.++ +..+ ...++++.+.+.|+|||+++...++-
T Consensus 141 ~~D~~~-~~~~---------~~~l----~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 141 LVDGFD-GEGI---------IDAL----CTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EEeCCC-CCCC---------cccc----CcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 33211 1110 0000 01278999999999999999976543
No 133
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.97 E-value=3.2e-05 Score=70.61 Aligned_cols=103 Identities=13% Similarity=-0.005 Sum_probs=66.5
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------e
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------V 230 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------l 230 (355)
..+++.-++.++||++||.|.-++.+|+.+ -.|+|+|.|+..+ +.+..+ . .+.+ |.+...|... .
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~--~--~~l~-i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAE--E--EGLD-IRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHH--H--TT-T-EEEEE-BGCCBS-TTTE
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHh--h--cCce-eEEEEecchhccccCCc
Confidence 345555566799999999999999999986 5799999999998 655554 2 2332 6666666432 4
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
|.-+|. ++ +.+- ....+++++++..+.++|||.+++.|
T Consensus 96 D~I~st-~v-----~~fL-----~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 96 DFIVST-VV-----FMFL-----QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEEE-SS-----GGGS------GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEE-EE-----eccC-----CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 444321 10 1111 11122378999999999999999955
No 134
>KOG1271|consensus
Probab=97.97 E-value=8e-06 Score=73.66 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=72.7
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcce-EEEEEeccee----------------
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHA-LKLVKVGGSV---------------- 229 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~-v~~~~~Da~~---------------- 229 (355)
++|||++||.|..-..|++..-++.++++|.|+..+ |.+|+.+ + -+.+| |++.+.|...
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe-~--~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE-R--DGFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHH-h--cCCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 499999999999999999887778999999999999 8888873 2 34444 7777666532
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
+||.. .+++....... --+...-++|+|||++|.+.|-++..|=
T Consensus 146 ~DAis------------Ls~d~~~~r~~--~Y~d~v~~ll~~~gifvItSCN~T~dEL 189 (227)
T KOG1271|consen 146 LDAIS------------LSPDGPVGRLV--VYLDSVEKLLSPGGIFVITSCNFTKDEL 189 (227)
T ss_pred eeeee------------cCCCCccccee--eehhhHhhccCCCcEEEEEecCccHHHH
Confidence 44432 11211111101 1255667789999999999999976553
No 135
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.97 E-value=6.7e-05 Score=73.12 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+.+|.+++|+.++|++.|-||.|..|+..+++|+|+|+|.++..+ .+++++
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~ 65 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS 65 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 456778999999999999999999999877569999999999999 666665
No 136
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.96 E-value=1.1e-05 Score=78.40 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=76.3
Q ss_pred chhcHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEE-e
Q psy7769 152 DGASLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVK-V 225 (355)
Q Consensus 152 D~aS~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~-~ 225 (355)
.+...++..+|. ..+|.+|||++||+|-.++.++.++ ..+|+|+|+++..+ +++|+. . .+.. ++.+.. .
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~--~--N~~~~~~~v~~~~ 219 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAE--L--NGVEDRIEVSLSE 219 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHH--H--TT-TTCEEESCTS
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHH--H--cCCCeeEEEEEec
Confidence 466777777774 6789999999999999888887765 36899999999999 888887 3 2332 333311 1
Q ss_pred cce--eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHH
Q psy7769 226 GGS--VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMS 294 (355)
Q Consensus 226 Da~--~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~ 294 (355)
|.. ..|.-+.. ...+-+ ..++....++++|||.++.|= +..++.+.|++.+
T Consensus 220 ~~~~~~~dlvvAN----------I~~~vL------~~l~~~~~~~l~~~G~lIlSG--Il~~~~~~v~~a~ 272 (295)
T PF06325_consen 220 DLVEGKFDLVVAN----------ILADVL------LELAPDIASLLKPGGYLILSG--ILEEQEDEVIEAY 272 (295)
T ss_dssp CTCCS-EEEEEEE----------S-HHHH------HHHHHHCHHHEEEEEEEEEEE--EEGGGHHHHHHHH
T ss_pred ccccccCCEEEEC----------CCHHHH------HHHHHHHHHhhCCCCEEEEcc--ccHHHHHHHHHHH
Confidence 110 02222200 111111 167777888999999999863 4455556665544
No 137
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.94 E-value=2e-05 Score=78.92 Aligned_cols=85 Identities=9% Similarity=0.072 Sum_probs=63.9
Q ss_pred CeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce-------------eee
Q psy7769 168 DTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS-------------VVY 231 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~-------------~lD 231 (355)
-+|||++||+|.-++.++... +-..|++||+++..+ +++|++ . .+..++++++.|+. .+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~--~--N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVE--Y--NSVENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH--H--hCCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 489999999999999998764 236899999999999 999997 3 34456777766654 266
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
|+ |+. . ..|..|++.++.||.|.++
T Consensus 122 Pf--Gs~-----------~---------~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 PF--GTP-----------A---------PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC--CCc-----------H---------HHHHHHHHhcccCCEEEEE
Confidence 64 221 1 5688999999988766554
No 138
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.94 E-value=4e-05 Score=76.17 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=44.0
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.+|||+|||+|..++.++... ..|+|+|+++.++ +++|++ . .++.++.++..|+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~--~--~~~~~v~~~~~d~ 254 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIA--A--NNIDNVQIIRMSA 254 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEEcCH
Confidence 479999999999999888775 5899999999999 888887 3 3555677665554
No 139
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.94 E-value=3.5e-05 Score=76.86 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=43.8
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
+.+|||+|||+|..++.++... .+|+|+|.++..+ +++|++ . .+..|+++...|+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~--~--~~~~~v~~~~~d~ 263 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIA--A--NGIDNVQIIRMSA 263 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHH--H--hCCCcEEEEECCH
Confidence 3579999999999999888765 5899999999999 888887 3 3455666655443
No 140
>PRK05785 hypothetical protein; Provisional
Probab=97.92 E-value=3.4e-05 Score=71.94 Aligned_cols=83 Identities=13% Similarity=-0.010 Sum_probs=57.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEeccee-------eecccCCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCSLS 237 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCSgs 237 (355)
++.+|||+|||+|..+.+++... .+.|+++|.|+.++ ..+.-. ..+++|+.. .|+-.++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-----------DKVVGSFEALPFRDKSFDVVMSSF 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-----------ceEEechhhCCCCCCCEEEEEecC
Confidence 47899999999999999998875 47999999999999 322111 122334332 55555444
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCc
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGG 273 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG 273 (355)
+ +....+.++.|+++.+.|||++
T Consensus 119 ~-------------l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 119 A-------------LHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred h-------------hhccCCHHHHHHHHHHHhcCce
Confidence 4 2233344478999999999953
No 141
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=4.6e-05 Score=73.49 Aligned_cols=139 Identities=15% Similarity=0.048 Sum_probs=80.3
Q ss_pred EechhcHHHHHhh-CCCCCC-eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 150 CMDGASLLPVLAL-NIRPYD-TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L-~~~pG~-~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
+-...-.++-.++ .....+ +|||+|||+|-.++.++.......|+|+|+|+..+ +++|+.+ .+..++.++..
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~----~~l~~~~~~~~ 167 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER----NGLVRVLVVQS 167 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH----cCCccEEEEee
Confidence 3344444554433 222223 79999999999999999888778999999999999 8899983 23344444433
Q ss_pred c----------ceeeecccCCCC-CccCCc-cccchHH-HH-hhhh--HH-HHHHHHHhhccCCcEEEEEeCCCCCCCCH
Q psy7769 226 G----------GSVVYSTCSLSP-IQNDGV-VHMSLKR-IW-EETG--CE-IEIKHALKLVKVGGSVVYSTCSLSPIQND 288 (355)
Q Consensus 226 D----------a~~lDaPCSgsG-~t~~~~-l~~~~~~-l~-~l~~--lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE 288 (355)
| .....||---.- ...... +++.|.. +. .... +- +++..+.++|+|||.++. -++.+ +.+
T Consensus 168 dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~--q~~ 244 (280)
T COG2890 168 DLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT--QGE 244 (280)
T ss_pred ecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC--cHH
Confidence 3 223555551110 000000 1122211 10 0011 22 899999999999776665 45543 334
Q ss_pred HHHHHHH
Q psy7769 289 GVVHMSL 295 (355)
Q Consensus 289 ~vV~~~L 295 (355)
.|.+.+.
T Consensus 245 ~v~~~~~ 251 (280)
T COG2890 245 AVKALFE 251 (280)
T ss_pred HHHHHHH
Confidence 4444443
No 142
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.91 E-value=6.4e-05 Score=69.08 Aligned_cols=101 Identities=11% Similarity=-0.039 Sum_probs=65.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
+.++.+|||+|||+|..+..++... .+|+++|+++.++ +++++. . .+. .++.+...|...++ . +
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~--~--~~~~~~i~~~~~d~~~~~--~-----~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQ--G--RDVAGNVEFEVNDLLSLC--G-----E 119 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH--h--cCCCCceEEEECChhhCC--C-----C
Confidence 5678999999999999999998753 6899999999999 667665 2 222 36788887765433 1 1
Q ss_pred cCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 241 NDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.+. .+...-+... ..++.++.++.+.+++|+.+.++.
T Consensus 120 fD~--ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 120 FDI--VVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred cCE--EEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 111 1111111111 122377888888888776665543
No 143
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00013 Score=66.96 Aligned_cols=114 Identities=18% Similarity=0.090 Sum_probs=78.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----------ee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----------VY 231 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----------lD 231 (355)
+++|++||=++|++|....|++...+.|.|+|++.++... |-...++ -+|+..+..||.. ||
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~------R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK------RPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh------CCCceeeecccCCcHHhhhhccccc
Confidence 6799999999999999999999998889999999999777 4444441 2466777778764 44
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE--eCCCCC-CCCHHHHHHHHHhh
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS--TCSLSP-IQNDGVVHMSLKRI 298 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs--TCSl~~-~ENE~vV~~~L~~~ 298 (355)
+-..- +.+-.+.+-+..+|-.+||+||.++.+ +-|+.- .+.+.|.+.-+++.
T Consensus 148 viy~D---------------VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL 202 (231)
T COG1889 148 VIYQD---------------VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKL 202 (231)
T ss_pred EEEEe---------------cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHH
Confidence 44311 111111114578899999999955544 555554 45555555455544
No 144
>KOG2187|consensus
Probab=97.90 E-value=2.5e-05 Score=79.93 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=84.6
Q ss_pred EEechhcHHHH------HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceE
Q psy7769 149 YCMDGASLLPV------LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHAL 220 (355)
Q Consensus 149 ~~QD~aS~l~~------~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v 220 (355)
++|.=.+++.+ ..+++.++..+||+|||+|..++.+|+.. ++|++++++++.+ ++.|.+ . .|+.|.
T Consensus 360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~--~--NgisNa 433 (534)
T KOG2187|consen 360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQ--I--NGISNA 433 (534)
T ss_pred hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcch--h--cCccce
Confidence 45776666554 34567788999999999999999998876 7999999999999 999998 4 688999
Q ss_pred EEEEeccee----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 221 KLVKVGGSV----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 221 ~~~~~Da~~----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
+|+.+-+.. ++-||-+++ +. ....+|.| ..+...+-.+++..+.=-++||.+|..+.+
T Consensus 434 ~Fi~gqaE~~~~sl~~~~~~~~-~~--v~iiDPpR----~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 434 TFIVGQAEDLFPSLLTPCCDSE-TL--VAIIDPPR----KGLHMKVIKALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred eeeecchhhccchhcccCCCCC-ce--EEEECCCc----ccccHHHHHHHHhccCccceEEEEcCHHHh
Confidence 999885543 444442322 10 00112211 233333445555555336999999998543
No 145
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.90 E-value=8.7e-05 Score=68.97 Aligned_cols=127 Identities=11% Similarity=-0.063 Sum_probs=74.6
Q ss_pred echhcHHHHHh--hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HH-hh-cccccc------ccCcc
Q psy7769 151 MDGASLLPVLA--LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LA-LN-IRPYDT------VLDIH 218 (355)
Q Consensus 151 QD~aS~l~~~~--L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~-~~-l~r~~~------~~g~~ 218 (355)
..+...+.... +.+.++.+|||.+||.|.-+..||+.+ -.|+|+|+|+..+ +. ++ +..... .....
T Consensus 20 ~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 20 EEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccC
Confidence 34445555443 345678899999999999999999865 5799999999988 32 11 110000 00124
Q ss_pred eEEEEEecceeeecccCCCCCccCCccccchHHHHhhhh-HH-HHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 219 ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETG-CE-IEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 219 ~v~~~~~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~-lQ-~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+|.+.++|...+++. ..| . -++.|...-+..+.. .. +.+....++|+|||++++.|=...+
T Consensus 98 ~v~~~~~D~~~l~~~--~~~-~--fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~ 160 (218)
T PRK13255 98 EITIYCGDFFALTAA--DLA-D--VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQ 160 (218)
T ss_pred ceEEEECcccCCCcc--cCC-C--eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCC
Confidence 577788887554321 111 0 011122221122211 11 7799999999999986655544443
No 146
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.90 E-value=9.4e-05 Score=66.59 Aligned_cols=106 Identities=14% Similarity=0.045 Sum_probs=67.7
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCc---------EEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDY---------YCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~---------V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
+.+.++++|+.|||-+||+|+..+..|.+..... ++++|+++..+ ++.|++. .+. ..+.+.+.|
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~----ag~~~~i~~~~~D 96 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA----AGVEDYIDFIQWD 96 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH----TT-CGGEEEEE--
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh----cccCCceEEEecc
Confidence 4455688999999999999999988887665444 99999999999 8899983 233 347788878
Q ss_pred cee------------eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCC
Q psy7769 227 GSV------------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 227 a~~------------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+.. .|+|- | .+ ...-.....+. ++++.+.+.+++ ..|+.|++
T Consensus 97 ~~~l~~~~~~~d~IvtnPPy---G------~r--~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~ 151 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPY---G------RR--LGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTS 151 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--S---T------TS--HCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEES
T ss_pred hhhcccccCCCCEEEECcch---h------hh--ccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEC
Confidence 765 33332 1 11 11122334455 899999999998 55555543
No 147
>PHA03411 putative methyltransferase; Provisional
Probab=97.89 E-value=7.6e-05 Score=71.72 Aligned_cols=128 Identities=10% Similarity=0.007 Sum_probs=76.2
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE-----------ecce
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK-----------VGGS 228 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~-----------~Da~ 228 (355)
+.+.++.+|||+|||+|..+..++......+|+++|+++.++ +++++.+ +.+++ .|..
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~---------v~~v~~D~~e~~~~~kFDlI 130 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPE---------AEWITSDVFEFESNEKFDVV 130 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcC---------CEEEECchhhhcccCCCcEE
Confidence 456667899999999999999888765447999999999998 5555431 23333 3444
Q ss_pred eeecccCCCCCccCCc-cccch-HHHHhhhhHHHHHHHHHhhccCCcEEE--EEeCCC-CCCCCHHHHHHHHHhh
Q psy7769 229 VVYSTCSLSPIQNDGV-VHMSL-KRIWEETGCEIEIKHALKLVKVGGSVV--YSTCSL-SPIQNDGVVHMSLKRI 298 (355)
Q Consensus 229 ~lDaPCSgsG~t~~~~-l~~~~-~~l~~l~~lQ~lL~~A~~~LkpGG~lV--YsTCSl-~~~ENE~vV~~~L~~~ 298 (355)
..++|.-.......+. ..|+- +.-.+...+.+.+..+..+|+|+|.+. |+.--+ +..=...-...+|+.+
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQT 205 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhc
Confidence 4666663222100000 11110 000010112377888899999999764 444222 4444556677778754
No 148
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.84 E-value=4.7e-05 Score=69.16 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=46.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG 227 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da 227 (355)
.|.+|||+|||+|..++.++..+. .+|+++|.++..+ +++|++ . .+. .++++++.|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~--~--~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLA--L--LKSGEQAEVVRNSA 108 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHH--H--hCCcccEEEEehhH
Confidence 588999999999999999988753 5899999999999 888887 3 333 3567777665
No 149
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.83 E-value=5.8e-05 Score=72.04 Aligned_cols=109 Identities=10% Similarity=0.027 Sum_probs=63.3
Q ss_pred CCCCeEeeecccCcch----HHHHHHhcC-----CCcEEEEcCCchhh--HHhhccc------c------ccc---cC--
Q psy7769 165 RPYDTVLDMCAAPGGK----TLVALQTLY-----PDYYCMDGASLLPV--LALNIRP------Y------DTV---LD-- 216 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgK----T~~la~~~~-----~g~V~AvD~s~~Rl--l~~~l~r------~------~~~---~g-- 216 (355)
.++.+|||+|||+|.- +..+++... ..+|+|+|+|+.++ +++.+-. + +|. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 4567999999999974 344444432 36899999999999 5554310 0 000 00
Q ss_pred -----c-ceEEEEEecceeeecccCCCCCccCCc-cc-cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 217 -----I-HALKLVKVGGSVVYSTCSLSPIQNDGV-VH-MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 217 -----~-~~v~~~~~Da~~lDaPCSgsG~t~~~~-l~-~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
+ .+|.+...|....++|-..+.+...+. +. +.+. .+ +++++..+.|+|||.|+....
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~-------~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEP-------TQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHH-------HHHHHHHHHHHHhCCCeEEEEECc
Confidence 0 246677777654332221111111111 11 2211 22 789999999999999998643
No 150
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.82 E-value=4.2e-05 Score=67.72 Aligned_cols=66 Identities=21% Similarity=0.122 Sum_probs=53.7
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
.+..+++.+|++|||+|||+|..|..++... ++|+|+|+++.++ +++++. . ..++++++.|+..++
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~--~----~~~v~ii~~D~~~~~ 72 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFA--A----ADNLTVIHGDALKFD 72 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhc--c----CCCEEEEECchhcCC
Confidence 3455678889999999999999999999873 7999999999998 777766 2 346888899986543
No 151
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.81 E-value=6.9e-05 Score=64.25 Aligned_cols=100 Identities=17% Similarity=0.015 Sum_probs=64.9
Q ss_pred cHHHHHhhC-CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecce----
Q psy7769 155 SLLPVLALN-IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGS---- 228 (355)
Q Consensus 155 S~l~~~~L~-~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~---- 228 (355)
+.++..++. ..++.+|||++||.|..+..++... .+|+++|+++..+ . .+.. ....+..
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~-~~~~------------~~~~~~~~~~~ 74 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK-RNVV------------FDNFDAQDPPF 74 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH-TTSE------------EEEEECHTHHC
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh-hhhh------------hhhhhhhhhhc
Confidence 334444554 5788999999999999888887664 4999999999887 5 1111 1111111
Q ss_pred ---eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 229 ---VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 229 ---~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+|.--+. .-+..+.....+|+...++|||||.++.++-..
T Consensus 75 ~~~~fD~i~~~-------------~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 PDGSFDLIICN-------------DVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HSSSEEEEEEE-------------SSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cccchhhHhhH-------------HHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 12222111 112223334488999999999999999998655
No 152
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.81 E-value=7.9e-05 Score=57.32 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=59.7
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCccc
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVH 246 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~l~ 246 (355)
+|+|+|||+|..+..++. ....+++++|.++..+ +++... . ....++.+...|........ ....++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~-----~~~~d~i 70 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAA--A--LLADNVEVLKGDAEELPPEA-----DESFDVI 70 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHh--c--ccccceEEEEcChhhhcccc-----CCceEEE
Confidence 589999999999888887 3457999999999988 442332 1 12345566665554321100 0000100
Q ss_pred cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEE
Q psy7769 247 MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 247 ~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYs 278 (355)
+...-........ .+++.+.+.++|||.++++
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 71 ISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 0000000001222 8899999999999999986
No 153
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.80 E-value=0.0001 Score=67.91 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=70.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-eecccCCCCCc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-VYSTCSLSPIQ 240 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-lDaPCSgsG~t 240 (355)
.-.+||++|++.|.-|+.+|..++ .|+|+++|.++.+. +++++++ .|. .+|+++.+|+.. ++.-..... .
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~----ag~~~~I~~~~gda~~~l~~l~~~~~-~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK----AGLDDRIEVIEGDALEVLPELANDGE-E 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH----TTGGGGEEEEES-HHHHHHHHHHTTT-T
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh----cCCCCcEEEEEeccHhhHHHHHhccC-C
Confidence 345999999999999999998775 49999999999999 8888884 344 578999888754 111110000 0
Q ss_pred cCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+.-++.| +.++ .+....++.+.++|+|||.||.-..-+
T Consensus 120 ~~fD~VFiDa~K----~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 120 GQFDFVFIDADK----RNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp TSEEEEEEESTG----GGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred CceeEEEEcccc----cchhhHHHHHhhhccCCeEEEEccccc
Confidence 0001111 1000 011166888889999999999866544
No 154
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.79 E-value=3.7e-05 Score=73.58 Aligned_cols=68 Identities=19% Similarity=0.044 Sum_probs=55.1
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
...+..+++.+|++|||+|||+|..|..+++.. .+|+|+|+++.++ +++++. + .++.++++|+..++.
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~------~-~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA------E-DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc------c-CceEEEEChhhcCCH
Confidence 344556688899999999999999999999885 4999999999999 666554 1 468899999876544
No 155
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.79 E-value=5.4e-05 Score=69.19 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=75.5
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
+|=|.+-.++...+|.-..-.++||++||.|..|.+||... .+|+|+|+++..+ +++++. +.++|.+...
T Consensus 25 ~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~------~~~~V~~~~~ 96 (201)
T PF05401_consen 25 WYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA------GLPHVEWIQA 96 (201)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT------T-SSEEEEES
T ss_pred HHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC------CCCCeEEEEC
Confidence 45455555555556666666799999999999999999987 6899999999999 777777 3457888888
Q ss_pred cceeeecccCCCCCccCCc-cccchHHHHhh---hhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 226 GGSVVYSTCSLSPIQNDGV-VHMSLKRIWEE---TGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 226 Da~~lDaPCSgsG~t~~~~-l~~~~~~l~~l---~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
|.....++ ...+ +..+ +-+.-+ ..++.++......|+|||.||..+-
T Consensus 97 dvp~~~P~-------~~FDLIV~S-EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 97 DVPEFWPE-------GRFDLIVLS-EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -TTT---S-------S-EEEEEEE-S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCCC-------CCeeEEEEe-hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 75331111 1111 1111 111111 1233788999999999999999664
No 156
>PRK00811 spermidine synthase; Provisional
Probab=97.75 E-value=0.00022 Score=68.79 Aligned_cols=127 Identities=14% Similarity=0.011 Sum_probs=77.3
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc-cccCcceEEEEEeccee-------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD-TVLDIHALKLVKVGGSV------- 229 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~-~~~g~~~v~~~~~Da~~------- 229 (355)
.+..+. ..+|||+|+|.|+.+..++...+..+|+++|+++..+ +++.+..+. .....+++.++..|+..
T Consensus 71 ~~~~~~-p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~ 149 (283)
T PRK00811 71 LFAHPN-PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETEN 149 (283)
T ss_pred HhhCCC-CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCC
Confidence 333343 4699999999999998888754346899999999999 666664211 00123578888888754
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.|+-.+.+. +. +.+. ..+ -.++.++.+.+.|+|||.+|..+-+ +......+..+++..
T Consensus 150 ~yDvIi~D~~---dp---~~~~--~~l-~t~ef~~~~~~~L~~gGvlv~~~~~--~~~~~~~~~~i~~tl 208 (283)
T PRK00811 150 SFDVIIVDST---DP---VGPA--EGL-FTKEFYENCKRALKEDGIFVAQSGS--PFYQADEIKDMHRKL 208 (283)
T ss_pred cccEEEECCC---CC---CCch--hhh-hHHHHHHHHHHhcCCCcEEEEeCCC--cccCHHHHHHHHHHH
Confidence 121111000 00 1111 000 0127888999999999999875433 334455666665544
No 157
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.73 E-value=0.00022 Score=68.11 Aligned_cols=117 Identities=14% Similarity=-0.044 Sum_probs=75.0
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----------
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---------- 229 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---------- 229 (355)
..+.|. +||++++|.|+.+..++......+|+++|+++..+ +++++.........++++++..|+..
T Consensus 69 ~~~~p~-~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 69 THPNPK-HVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred cCCCCC-EEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 344444 99999999999887777654346899999999988 66665421100122456777777632
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhH-H-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGC-E-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~l-Q-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|++-. .+ +. ..+ . +.++.+.+.|+|||.++..++|. .-+...+..+++.
T Consensus 148 vIi~D~~~~-~~----------~~-----~~l~~~ef~~~~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~t 202 (270)
T TIGR00417 148 VIIVDSTDP-VG----------PA-----ETLFTKEFYELLKKALNEDGIFVAQSESP--WIQLELITDLKRD 202 (270)
T ss_pred EEEEeCCCC-CC----------cc-----cchhHHHHHHHHHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHH
Confidence 443320 11 00 011 1 77889999999999999987654 3445666655543
No 158
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.73 E-value=3.5e-05 Score=68.60 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=62.9
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc---------------ee
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG---------------SV 229 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da---------------~~ 229 (355)
..|+|+|||-||-|+++|... .+|+|+|+++.|+ ++.|++ - .|. .+|.++++|. ..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~--v--YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAE--V--YGVADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHH--H--TT-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 369999999999999999986 6899999999999 899998 4 353 5788776654 34
Q ss_pred eecccCCCCCccCCccccchHHH-Hhhh--hHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHH
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRI-WEET--GCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l-~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L 295 (355)
++||--|-.-..... + ++ ..+. .++++++.+.+.-+. .++|= -+.-|-..+.+++
T Consensus 75 lSPPWGGp~Y~~~~~--f---dL~~~~~p~~~~~l~~~~~~~t~n--v~l~L----PRn~dl~ql~~~~ 132 (163)
T PF09445_consen 75 LSPPWGGPSYSKKDV--F---DLEKSMQPFNLEDLLKAARKITPN--VVLFL----PRNSDLNQLSQLT 132 (163)
T ss_dssp E---BSSGGGGGSSS--B----TTTSSSS--HHHHHHHHHHH-S---EEEEE----ETTB-HHHHHHT-
T ss_pred ECCCCCCccccccCc--c---CHHHccCCCCHHHHHHHHHhhCCC--EEEEe----CCCCCHHHHHHHh
Confidence 788874322111111 1 11 1112 233778777776542 55553 2333445555554
No 159
>PRK06202 hypothetical protein; Provisional
Probab=97.73 E-value=0.0001 Score=68.48 Aligned_cols=103 Identities=13% Similarity=-0.059 Sum_probs=62.0
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcC----CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLY----PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~----~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--- 229 (355)
...+...++.+|||+|||+|..+..++.... ..+|+|+|+++.++ ++++.. . . ++.+...|+..
T Consensus 53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~--~--~---~~~~~~~~~~~l~~ 125 (232)
T PRK06202 53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR--R--P---GVTFRQAVSDELVA 125 (232)
T ss_pred HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc--c--C---CCeEEEEecccccc
Confidence 3444556778999999999999988886431 25899999999999 555443 1 1 23333333221
Q ss_pred ----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 ----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+|.-++..+ +++-++. .+.++|+++.+.++ |.++...-+
T Consensus 126 ~~~~fD~V~~~~~------lhh~~d~-----~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 126 EGERFDVVTSNHF------LHHLDDA-----EVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred cCCCccEEEECCe------eecCChH-----HHHHHHHHHHHhcC--eeEEEeccc
Confidence 444443322 2222211 12268899999988 455554333
No 160
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.72 E-value=9.1e-05 Score=67.26 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=63.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc--------------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG-------------- 227 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da-------------- 227 (355)
-.|.+|||++||+|+.++.++..+. .+++.+|.+...+ +++|++. ++. .++.++..|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~----l~~~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKA----LGLEGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHH----hCCccceEEEeecHHHHHHhcCCCCccc
Confidence 3689999999999999998887753 6899999999988 9999983 332 3455555444
Q ss_pred -eeeecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEE
Q psy7769 228 -SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 228 -~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVY 277 (355)
..+|||.- - .+...+ -++..-..+|+|||.+|.
T Consensus 117 lVflDPPy~-~----------------~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 117 LVFLDPPYA-K----------------GLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred EEEeCCCCc-c----------------chhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 44888871 1 122112 222235567999877776
No 161
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.72 E-value=7.3e-05 Score=70.97 Aligned_cols=75 Identities=12% Similarity=-0.053 Sum_probs=58.6
Q ss_pred EEech-hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 149 YCMDG-ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 149 ~~QD~-aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
++-|+ .....+..+++.+|+.|||+|||+|..|..+++.. .+|+|+|+++.++ +++++. . ..++.++++
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~--~----~~~v~ii~~ 82 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEI--A----AGNVEIIEG 82 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhc--c----CCCEEEEEe
Confidence 33343 34455666788899999999999999999999874 6899999999999 766665 2 357889999
Q ss_pred cceeee
Q psy7769 226 GGSVVY 231 (355)
Q Consensus 226 Da~~lD 231 (355)
|+..++
T Consensus 83 D~~~~~ 88 (258)
T PRK14896 83 DALKVD 88 (258)
T ss_pred ccccCC
Confidence 986644
No 162
>KOG2904|consensus
Probab=97.71 E-value=0.0002 Score=68.41 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=80.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec----c------------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG----G------------ 227 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D----a------------ 227 (355)
.+..+||+|||+|..++.++..+.+++|+|+|+|+..+ +.+|++|+.. . +.+.+.+.+ .
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-~--g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-S--GRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-c--CceEEEecccccccccccccccCcee
Confidence 46689999999999999999888889999999999999 8899996431 1 234444332 1
Q ss_pred -eeeecccCCCCCccCCc---cc-----cchHHHHhhhh------HHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHH
Q psy7769 228 -SVVYSTCSLSPIQNDGV---VH-----MSLKRIWEETG------CEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 228 -~~lDaPCSgsG~t~~~~---l~-----~~~~~l~~l~~------lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~ 292 (355)
....||- ....+ ++ +.+. +.-... +-.++.-|-++|+|||.+++.+--. .+....|.
T Consensus 225 llvsNPPY-----I~~dD~~~l~~eV~~yEp~-lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~~~lv~ 296 (328)
T KOG2904|consen 225 LLVSNPPY-----IRKDDNRQLKPEVRLYEPK-LALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEHSYLVR 296 (328)
T ss_pred EEecCCCc-----ccccchhhcCchheecCch-hhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc--ccCcHHHH
Confidence 1134444 11111 11 1111 110011 1166777899999999999987644 56677788
Q ss_pred HHHHhh
Q psy7769 293 MSLKRI 298 (355)
Q Consensus 293 ~~L~~~ 298 (355)
..+...
T Consensus 297 ~~m~s~ 302 (328)
T KOG2904|consen 297 IWMISL 302 (328)
T ss_pred HHHHhc
Confidence 777654
No 163
>PRK01581 speE spermidine synthase; Validated
Probab=97.65 E-value=0.00035 Score=69.64 Aligned_cols=121 Identities=12% Similarity=-0.029 Sum_probs=74.6
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhcccc----ccccCcceEEEEEeccee---
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPY----DTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~----~~~~g~~~v~~~~~Da~~--- 229 (355)
++....+.|. +||++|+|.|+.+..+++.....+|+++|+++..+ +.++...+ +.....++++++..||..
T Consensus 143 p~m~~h~~Pk-rVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~ 221 (374)
T PRK01581 143 PIMSKVIDPK-RVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS 221 (374)
T ss_pred HHHHhCCCCC-EEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH
Confidence 4445555554 99999999999666666543347899999999999 54432100 000233678888888764
Q ss_pred ----------eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 230 ----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 230 ----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
+|+|- +.. .....+. +.++.+.+.|+|||++|.-.- +|.....++..+.+
T Consensus 222 ~~~~~YDVIIvDl~D--------------P~~-~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~--sp~~~~~~~~~i~~ 283 (374)
T PRK01581 222 SPSSLYDVIIIDFPD--------------PAT-ELLSTLYTSELFARIATFLTEDGAFVCQSN--SPADAPLVYWSIGN 283 (374)
T ss_pred hcCCCccEEEEcCCC--------------ccc-cchhhhhHHHHHHHHHHhcCCCcEEEEecC--ChhhhHHHHHHHHH
Confidence 33321 100 0011222 789999999999999887643 33455555444443
No 164
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.65 E-value=7.5e-05 Score=72.50 Aligned_cols=79 Identities=18% Similarity=0.033 Sum_probs=61.5
Q ss_pred EEEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC-cceEEEE
Q psy7769 148 YYCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD-IHALKLV 223 (355)
Q Consensus 148 ~~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-~~~v~~~ 223 (355)
.++.|+. -...+..+++.+|+.|||+|||+|..|..++... .+|+|+|+++.++ +++++. . .+ ..+++++
T Consensus 17 nFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~--~--~~~~~~v~ii 90 (294)
T PTZ00338 17 HILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQ--N--SPLASKLEVI 90 (294)
T ss_pred cccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHH--h--cCCCCcEEEE
Confidence 3444543 4455667788999999999999999999998864 6899999999999 888876 3 23 3578999
Q ss_pred Eecceeeec
Q psy7769 224 KVGGSVVYS 232 (355)
Q Consensus 224 ~~Da~~lDa 232 (355)
.+|+..+|.
T Consensus 91 ~~Dal~~~~ 99 (294)
T PTZ00338 91 EGDALKTEF 99 (294)
T ss_pred ECCHhhhcc
Confidence 999866443
No 165
>PHA03412 putative methyltransferase; Provisional
Probab=97.64 E-value=0.00014 Score=68.49 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=74.8
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc---CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL---YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~---~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
....++.++.. ...+.+|||+|||+|..++.++..+ ....|+|+|+++..+ +++|+.+ +.+.+
T Consensus 36 P~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---------~~~~~ 103 (241)
T PHA03412 36 PIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---------ATWIN 103 (241)
T ss_pred CHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---------CEEEE
Confidence 45554544322 2347799999999999999998753 236899999999999 6666541 23333
Q ss_pred ec-----------ceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEE--------EEeCCCCC
Q psy7769 225 VG-----------GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVV--------YSTCSLSP 284 (355)
Q Consensus 225 ~D-----------a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lV--------YsTCSl~~ 284 (355)
.| .....||-.-.. . . .+. .+ ..-..+. .++..|.+++++|+.|+ ||-|-...
T Consensus 104 ~D~~~~~~~~~FDlIIsNPPY~~~~-~--~--d~~-ar-~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~ 176 (241)
T PHA03412 104 ADALTTEFDTLFDMAISNPPFGKIK-T--S--DFK-GK-YTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFR 176 (241)
T ss_pred cchhcccccCCccEEEECCCCCCcc-c--c--ccC-Cc-ccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCcccee
Confidence 33 333555542111 0 0 000 00 0011223 79999999999887655 67666552
Q ss_pred -CCC--HHHHHHHHH
Q psy7769 285 -IQN--DGVVHMSLK 296 (355)
Q Consensus 285 -~EN--E~vV~~~L~ 296 (355)
+|| ..-+.+|++
T Consensus 177 ~~~~~~~~~~~~~~~ 191 (241)
T PHA03412 177 QDESTTSSKCKKFLD 191 (241)
T ss_pred eccCcccHHHHHHHH
Confidence 222 234445554
No 166
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.64 E-value=0.0002 Score=69.85 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=39.8
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
++..|.++++..++|++-|-||.|.++++..++++|+|+|.++..+ +++++.
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 4567789999999999999999999999988779999999999999 666766
No 167
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.62 E-value=0.00021 Score=70.47 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=60.8
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc--ccc-Cc---ceEEEEEeccee--------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD--TVL-DI---HALKLVKVGGSV-------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~--~~~-g~---~~v~~~~~Da~~-------- 229 (355)
++.+|||||||=||-..-.... +.+.++++|++..-+ ++++.+.+. .-. .. -...++..|...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7899999999999977655543 348999999999999 666662100 000 00 123556666532
Q ss_pred -----eecccCCCCCccCCccc--cc-hHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 -----VYSTCSLSPIQNDGVVH--MS-LKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l~--~~-~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.|+.+.=++ +| |. .+..+ .+|.++.+.|+|||.++-+|..-
T Consensus 141 ~~~~~FDvVScQFa------lHY~Fese~~ar------~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFA------LHYAFESEEKAR------QFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-------GGGGGSSHHHHH------HHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccCCCcceeehHHH------HHHhcCCHHHHH------HHHHHHHHhcCCCCEEEEEecCH
Confidence 111110000 22 21 11111 79999999999999999988765
No 168
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.60 E-value=9.3e-05 Score=71.62 Aligned_cols=143 Identities=20% Similarity=0.140 Sum_probs=81.3
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-------CCCcEEEEcCCchhh--HHhhccccccccCc-
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-------YPDYYCMDGASLLPV--LALNIRPYDTVLDI- 217 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-------~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~- 217 (355)
||--+.-+.+.+.++.+.++++|+|-|||+|+....+...+ ....++++|+++..+ ++-|+. - .+.
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~--l--~~~~ 103 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL--L--HGID 103 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH--H--TTHH
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh--h--hccc
Confidence 55555556788888899999999999999999988877642 457899999999988 333432 1 122
Q ss_pred -ceEEEEEe--------------cceeeecccCCCCCccCCc----cccchHHHHhhhhHH-HHHHHHHhhccCCcEEEE
Q psy7769 218 -HALKLVKV--------------GGSVVYSTCSLSPIQNDGV----VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 218 -~~v~~~~~--------------Da~~lDaPCSgsG~t~~~~----l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVY 277 (355)
.+..+... |.....||-...+. .... .+|... .......+ ..+.++++.|++||++++
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEW-KDEELEKDERFKKY-FPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES--STGGGCTTCCCTTC-SSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCcccccc-cccccccccccccc-CCCccchhhhhHHHHHhhcccccceeE
Confidence 22233333 33447777744321 1111 123221 11112233 578999999999999877
Q ss_pred EeCC--CCCCCCHHHHHHHHH
Q psy7769 278 STCS--LSPIQNDGVVHMSLK 296 (355)
Q Consensus 278 sTCS--l~~~ENE~vV~~~L~ 296 (355)
.+-+ ++...-+.-+++.|-
T Consensus 182 Ilp~~~L~~~~~~~~iR~~ll 202 (311)
T PF02384_consen 182 ILPNGFLFSSSSEKKIRKYLL 202 (311)
T ss_dssp EEEHHHHHGSTHHHHHHHHHH
T ss_pred EecchhhhccchHHHHHHHHH
Confidence 7654 333222455655543
No 169
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.56 E-value=0.00046 Score=63.40 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=39.1
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+.++.+|||+|||+|..+..++...+...|+|+|+|+.++ +++++.
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~ 88 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP 88 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC
Confidence 45578899999999999999998876558999999999999 555443
No 170
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.54 E-value=0.00012 Score=76.14 Aligned_cols=119 Identities=11% Similarity=0.073 Sum_probs=83.5
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee---cccCCCCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY---STCSLSPI 239 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD---aPCSgsG~ 239 (355)
..+..+||+|||-|..++++|...+...++++|++...+ +.+.+. . .+..|+.++..|+..+. ++.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~--~--~~l~N~~~~~~~~~~~~~~~~~~----- 416 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAG--E--QNITNFLLFPNNLDLILNDLPNN----- 416 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH--H--cCCCeEEEEcCCHHHHHHhcCcc-----
Confidence 356799999999999999999998888999999999988 444444 2 46778888888765321 111
Q ss_pred ccCCc-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 240 QNDGV-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 240 t~~~~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+.++. +. |-..+..++--+| ..|+...+.|||||.|-+.| -++.-..+.++..
T Consensus 417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T------D~~~y~~~~~~~~ 475 (506)
T PRK01544 417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS------DIENYFYEAIELI 475 (506)
T ss_pred cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc------CCHHHHHHHHHHH
Confidence 11222 22 4333333333344 88999999999999999988 5566666666543
No 171
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00013 Score=68.28 Aligned_cols=113 Identities=14% Similarity=0.044 Sum_probs=69.3
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhcccc-ccccCcceEEEEEeccee--eeccc
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPY-DTVLDIHALKLVKVGGSV--VYSTC 234 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~-~~~~g~~~v~~~~~Da~~--lDaPC 234 (355)
+....|+.|++|||.|.|-|..++..++.+. .+|+.+|.++.=+ |+..-- . +.+.. .+++++.+|+.. -|.+-
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNP-wSr~l~~-~~i~iilGD~~e~V~~~~D 203 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNP-WSRELFE-IAIKIILGDAYEVVKDFDD 203 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCC-CCccccc-cccEEecccHHHHHhcCCc
Confidence 3445677899999999999999888887751 3899999999888 432110 0 00011 257888777643 11111
Q ss_pred CCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEe
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsT 279 (355)
+++-. +.-+|-++..-..|. ++-++.++.|||||+++--|
T Consensus 204 ~sfDa-----IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 204 ESFDA-----IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred cccce-----EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 11100 111122222223444 78899999999999998444
No 172
>PLN02672 methionine S-methyltransferase
Probab=97.51 E-value=0.00032 Score=78.42 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=78.2
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc------------cCcceEEEEEeccee---
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV------------LDIHALKLVKVGGSV--- 229 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~------------~g~~~v~~~~~Da~~--- 229 (355)
|.+|||+|||+|..++.++...+.++|+|+|+|+..+ +++|+++...- ....++.++++|...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999887668999999999999 88888731100 001357888777532
Q ss_pred -----eecccCCCCCccCCc-------cc-cchH-------HHHhh-------hhHH---HHHHHHHhhccCCcEEEEEe
Q psy7769 230 -----VYSTCSLSPIQNDGV-------VH-MSLK-------RIWEE-------TGCE---IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~-------l~-~~~~-------~l~~l-------~~lQ---~lL~~A~~~LkpGG~lVYsT 279 (355)
+|.-.|.=--..... ++ +.|+ ....+ ..+. +|+..|.++|+|||.+++=.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 222211000000000 00 1110 00111 1222 89999999999999888544
Q ss_pred CCCCCCCCHHHHHHHHHh
Q psy7769 280 CSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 280 CSl~~~ENE~vV~~~L~~ 297 (355)
-..+.+.|.+.++++
T Consensus 279 ---G~~q~~~v~~~l~~~ 293 (1082)
T PLN02672 279 ---GGRPGQAVCERLFER 293 (1082)
T ss_pred ---CccHHHHHHHHHHHH
Confidence 445667777555554
No 173
>KOG1099|consensus
Probab=97.48 E-value=0.00024 Score=66.24 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=26.7
Q ss_pred CeEeeecccCcchHHHHHHhc-C----C----CcEEEEcCCc
Q psy7769 168 DTVLDMCAAPGGKTLVALQTL-Y----P----DYYCMDGASL 200 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~-~----~----g~V~AvD~s~ 200 (355)
.+|+|+|||||+++..+++.+ . . .+|+|+|+.+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~ 84 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP 84 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc
Confidence 489999999999999998754 2 1 2399999876
No 174
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.48 E-value=0.00039 Score=63.79 Aligned_cols=57 Identities=9% Similarity=-0.080 Sum_probs=44.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
..++.+|||+|||+|..+..+++.. ..|+++|+++.++ +++++. . .+. .++.+...|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~--~--~~~~~~i~~~~~d 120 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAP--E--AGLAGNITFEVGD 120 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH--h--cCCccCcEEEEcC
Confidence 3578899999999999999988764 5699999999999 666665 2 222 457777777
No 175
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00023 Score=67.85 Aligned_cols=79 Identities=18% Similarity=0.058 Sum_probs=65.1
Q ss_pred EEEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 148 YYCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 148 ~~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
-|+.|.. -.-++...++++++.||++|+|.|..|..|++.. .+|+|+|+++..+ |++.+. ...|+++++
T Consensus 11 nFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~------~~~n~~vi~ 82 (259)
T COG0030 11 NFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA------PYDNLTVIN 82 (259)
T ss_pred ccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc------cccceEEEe
Confidence 4566654 3456778889999999999999999999999987 6799999999988 766664 236789999
Q ss_pred ecceeeeccc
Q psy7769 225 VGGSVVYSTC 234 (355)
Q Consensus 225 ~Da~~lDaPC 234 (355)
+|+..+|.|-
T Consensus 83 ~DaLk~d~~~ 92 (259)
T COG0030 83 GDALKFDFPS 92 (259)
T ss_pred CchhcCcchh
Confidence 9999888874
No 176
>KOG1596|consensus
Probab=97.45 E-value=0.00086 Score=63.10 Aligned_cols=123 Identities=20% Similarity=0.112 Sum_probs=86.5
Q ss_pred cHHHHHhh------CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 155 SLLPVLAL------NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L------~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|-|++..| .++||.+||=++||.|..-.|++.... .|.|+|+|.|..-= |....++ -.||..+..
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------RtNiiPIiE 212 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------RTNIIPIIE 212 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------cCCceeeec
Confidence 44555444 478999999999999999999999875 49999999986433 4444441 146667777
Q ss_pred ccee----------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE---eCCCCCCCCHHHHH
Q psy7769 226 GGSV----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS---TCSLSPIQNDGVVH 292 (355)
Q Consensus 226 Da~~----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs---TCSl~~~ENE~vV~ 292 (355)
|++. ||.-.+-.. .|+..+ -+.-+|.-+||+||-+|.| .|+-+...+|.|.+
T Consensus 213 DArhP~KYRmlVgmVDvIFaDva---------qpdq~R------ivaLNA~~FLk~gGhfvisikancidstv~ae~vFa 277 (317)
T KOG1596|consen 213 DARHPAKYRMLVGMVDVIFADVA---------QPDQAR------IVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFA 277 (317)
T ss_pred cCCCchheeeeeeeEEEEeccCC---------Cchhhh------hhhhhhhhhhccCCeEEEEEecccccccccHHHHHH
Confidence 7764 444432211 111111 3456888999999999976 79999999999988
Q ss_pred HHHHhh
Q psy7769 293 MSLKRI 298 (355)
Q Consensus 293 ~~L~~~ 298 (355)
.-.++.
T Consensus 278 ~Ev~kl 283 (317)
T KOG1596|consen 278 AEVKKL 283 (317)
T ss_pred HHHHHH
Confidence 766543
No 177
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.43 E-value=0.00027 Score=66.73 Aligned_cols=78 Identities=17% Similarity=0.033 Sum_probs=58.8
Q ss_pred EEEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 148 YYCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 148 ~~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
.|+-|.. ....+..+++.++++|||+|||+|..|..+++.. ..|+++|+++.++ +++++. . ..++.+++
T Consensus 10 ~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~--~----~~~v~v~~ 81 (253)
T TIGR00755 10 NFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLS--L----YERLEVIE 81 (253)
T ss_pred ccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhC--c----CCcEEEEE
Confidence 3444533 3344556678899999999999999999999886 4699999999998 666554 1 35688899
Q ss_pred ecceeeecc
Q psy7769 225 VGGSVVYST 233 (355)
Q Consensus 225 ~Da~~lDaP 233 (355)
+|+..++.+
T Consensus 82 ~D~~~~~~~ 90 (253)
T TIGR00755 82 GDALKVDLP 90 (253)
T ss_pred CchhcCChh
Confidence 998765544
No 178
>PRK03612 spermidine synthase; Provisional
Probab=97.41 E-value=0.00092 Score=69.84 Aligned_cols=117 Identities=10% Similarity=-0.090 Sum_probs=74.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhh--cccc-ccccCcceEEEEEeccee----------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALN--IRPY-DTVLDIHALKLVKVGGSV---------- 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~--l~r~-~~~~g~~~v~~~~~Da~~---------- 229 (355)
.+..+|||+|+|.|..+..+++.....+|+++|+++..+ ++++ +..+ ....+.++++++..|+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 345699999999999888887642226999999999999 5553 2210 000123578888888764
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|.|.. +.+. ...+. +.++.+.+.|+|||.++..++|.. ........+.+..
T Consensus 376 vIi~D~~~~-----------~~~~----~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~i~~~l 432 (521)
T PRK03612 376 VIIVDLPDP-----------SNPA----LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPKAFWSIEATL 432 (521)
T ss_pred EEEEeCCCC-----------CCcc----hhccchHHHHHHHHHhcCCCeEEEEecCCcc--cchHHHHHHHHHH
Confidence 333220 0000 01122 788899999999999998877543 3455555554443
No 179
>PRK10742 putative methyltransferase; Provisional
Probab=97.40 E-value=0.00061 Score=64.56 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=55.3
Q ss_pred cHHHHHhhCCCCCC--eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc--ccC--c-ceEEEEEe
Q psy7769 155 SLLPVLALNIRPYD--TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT--VLD--I-HALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L~~~pG~--~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~--~~g--~-~~v~~~~~ 225 (355)
....+.++++++|+ +|||++||.|.-++.+|..+ +.|+++|.++.-. ++++++++.. -.+ . .++++++.
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 46778999999999 99999999999999999885 6799999999888 8888885210 001 1 45677666
Q ss_pred cc
Q psy7769 226 GG 227 (355)
Q Consensus 226 Da 227 (355)
|+
T Consensus 153 da 154 (250)
T PRK10742 153 SS 154 (250)
T ss_pred cH
Confidence 54
No 180
>KOG1541|consensus
Probab=97.39 E-value=0.001 Score=61.92 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=82.4
Q ss_pred EEEechhcHHHHHhhCCCC--CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh---HHhhccccccccCc--ceE
Q psy7769 148 YYCMDGASLLPVLALNIRP--YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV---LALNIRPYDTVLDI--HAL 220 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~p--G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl---l~~~l~r~~~~~g~--~~v 220 (355)
.++|-+-+.-+..+|++.+ ..-|||++||+|-.+..+.+.+ -..+++|+|++|| +.+.++- .++++- ..+
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~eg-dlil~DMG~Gl 106 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELEG-DLILCDMGEGL 106 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhhhhc-CeeeeecCCCC
Confidence 6789998888888888765 6689999999998887776554 4689999999999 3333330 000000 001
Q ss_pred EEE--Eeccee----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHH
Q psy7769 221 KLV--KVGGSV----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMS 294 (355)
Q Consensus 221 ~~~--~~Da~~----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~ 294 (355)
-|. .+||.. |--+|-+. ...+-...++. ..+...+..|++|++.|+= ...||+++++.+
T Consensus 107 pfrpGtFDg~ISISAvQWLcnA~-----~s~~~P~~Rl~------~FF~tLy~~l~rg~raV~Q----fYpen~~q~d~i 171 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCNAD-----KSLHVPKKRLL------RFFGTLYSCLKRGARAVLQ----FYPENEAQIDMI 171 (270)
T ss_pred CCCCCccceEEEeeeeeeecccC-----ccccChHHHHH------HHhhhhhhhhccCceeEEE----ecccchHHHHHH
Confidence 010 123322 33444111 11000111121 4566788899999999873 456999999999
Q ss_pred HHhh
Q psy7769 295 LKRI 298 (355)
Q Consensus 295 L~~~ 298 (355)
+...
T Consensus 172 ~~~a 175 (270)
T KOG1541|consen 172 MQQA 175 (270)
T ss_pred HHHH
Confidence 8765
No 181
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.34 E-value=0.00048 Score=62.63 Aligned_cols=97 Identities=12% Similarity=-0.020 Sum_probs=70.4
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV 244 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~ 244 (355)
.+.+.|++||+|-.+..+|... -+|+|++.++.+. +.+|++ - .|..||+++.+|+...|..- .- -
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~--v--~g~~n~evv~gDA~~y~fe~--AD----v- 99 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLH--V--PGDVNWEVVVGDARDYDFEN--AD----V- 99 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCC--C--CCCcceEEEecccccccccc--cc----e-
Confidence 3799999999999888877764 6899999999999 889987 2 67789999999998766521 10 0
Q ss_pred cccchHHHHhhhhHH-HHHHHHHhhccCCcEEE
Q psy7769 245 VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVV 276 (355)
Q Consensus 245 l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lV 276 (355)
+.-..-+..-+..-| ..++.++++||-.++++
T Consensus 100 vicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 100 VICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred eHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 000000111122455 78999999999988876
No 182
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.32 E-value=0.00027 Score=64.17 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=68.0
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------eecccCCCCCc
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------VYSTCSLSPIQ 240 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------lDaPCSgsG~t 240 (355)
+|+|+|+|.|-=++.+|-..+...++.+|.+.+|+ ++.... . ++..|+++++..+.. .|.-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~--~--L~L~nv~v~~~R~E~~~~~~~fd~v~------ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVR--E--LGLSNVEVINGRAEEPEYRESFDVVT------ 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHH--H--HT-SSEEEEES-HHHTTTTT-EEEEE------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHH--H--hCCCCEEEEEeeecccccCCCccEEE------
Confidence 89999999999999999888778999999999999 666666 3 577889998877654 22221
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+..+.+..+++-+..++++||+++.---
T Consensus 121 -----------aRAv~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 121 -----------ARAVAPLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -----------EESSSSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred -----------eehhcCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 12233444789999999999998887644
No 183
>KOG1661|consensus
Probab=97.32 E-value=0.00028 Score=65.09 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=73.9
Q ss_pred HHhhC--CCCCCeEeeecccCcchHHHHHHhc-CCCc-EEEEcCCchhh--HHhhccccccc--------cCcceEEEEE
Q psy7769 159 VLALN--IRPYDTVLDMCAAPGGKTLVALQTL-YPDY-YCMDGASLLPV--LALNIRPYDTV--------LDIHALKLVK 224 (355)
Q Consensus 159 ~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~-~~g~-V~AvD~s~~Rl--l~~~l~r~~~~--------~g~~~v~~~~ 224 (355)
..+|+ ++||...||+++|+|..|+.++.+. .+|. ++++|..+.-+ .++|+. +.. +...++.++.
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~--k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLD--KDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHH--hhccCchhhhhhccCceEEEe
Confidence 45555 8999999999999999999999765 3455 49999999888 777776 322 1124567888
Q ss_pred ecceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 225 VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 225 ~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+|++..-+.|.-. +++.--+.-+++.++.+..|++||+|+.-
T Consensus 151 GDgr~g~~e~a~Y------------DaIhvGAaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPY------------DAIHVGAAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccccCCccCCc------------ceEEEccCccccHHHHHHhhccCCeEEEe
Confidence 9988755555211 11111122236677888899999999873
No 184
>KOG4589|consensus
Probab=97.30 E-value=0.0018 Score=58.95 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=66.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhhHHhhccccccccCcceEEEEEe-cce-------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKV-GGS------------- 228 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~-Da~------------- 228 (355)
++||++|||++||||.++..+-+.. ++|.|.++|+-.-.- .+.+.++.+ |.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-------------~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-------------PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-------------CCCcccccccccCCHHHHHHHHHhCC
Confidence 4689999999999999988777776 559999999743110 001111111 111
Q ss_pred --eeeccc-----CCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 229 --VVYSTC-----SLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 229 --~lDaPC-----SgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.+|+.- -.+|+. ..+.....+|- .+|.-|+.+++|+|.+|- -+..-+.+.-.++-|..+
T Consensus 134 ~r~VdvVlSDMapnaTGvr--------~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc---K~w~g~e~~~l~r~l~~~ 200 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVR--------IRDHYRSIELCDSALLFALTLLIPNGSFVC---KLWDGSEEALLQRRLQAV 200 (232)
T ss_pred CCcccEEEeccCCCCcCcc--------hhhHHHHHHHHHHHHHHhhhhcCCCcEEEE---EEecCCchHHHHHHHHHH
Confidence 133332 233421 11222333444 778889999999999984 444446666666666654
No 185
>KOG2899|consensus
Probab=97.29 E-value=0.00062 Score=64.11 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=39.9
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+-.+||++|-.|-.|++||.......|+++|+++.++ ++++++
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 35589999999999999999988778899999999999 888887
No 186
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.27 E-value=0.0014 Score=58.50 Aligned_cols=97 Identities=18% Similarity=0.039 Sum_probs=72.8
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----------
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---------- 229 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---------- 229 (355)
++..|--||.++.|+|-.|-.|+..+ .+..++++|.|++-. |.+... + +.++++|+..
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~---~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------G---VNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------C---ccccccchhhHHHHHhhcCC
Confidence 67889999999999999999988765 558899999999988 544433 2 3467777643
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+|..-||.-+ ..+..-+ +||+.+...|.+||.+|--|-+
T Consensus 116 q~~D~viS~lPl-------------l~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPL-------------LNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CeeeeEEecccc-------------ccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 7777666552 1111112 7899999999999999977776
No 187
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.25 E-value=0.00042 Score=64.98 Aligned_cols=38 Identities=24% Similarity=0.111 Sum_probs=33.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+|..|||++||||+.|..+++.+ ..+|+|+|++..++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l 111 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQL 111 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHH
Confidence 368899999999999999999873 47899999999888
No 188
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.24 E-value=0.00091 Score=65.62 Aligned_cols=60 Identities=12% Similarity=-0.128 Sum_probs=43.9
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc-ccCcceEEEEEecc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT-VLDIHALKLVKVGG 227 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~-~~g~~~v~~~~~Da 227 (355)
+|.+|||+|||+|..+..++... ..|+++|+|+.++ ++++.+.... ..+..++.+...|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 68899999999999999999863 6899999999999 7777652100 00123456666664
No 189
>PLN02366 spermidine synthase
Probab=97.15 E-value=0.0039 Score=60.99 Aligned_cols=126 Identities=10% Similarity=-0.012 Sum_probs=72.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-eecccCCCCCccC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-VYSTCSLSPIQND 242 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-lDaPCSgsG~t~~ 242 (355)
...+||++|+|.|+.+..+++.-.-.+|+.+|+++..+ +++.+.........++++++..|+.. +. .+. .+ ..+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-~~~-~~-~yD 167 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-NAP-EG-TYD 167 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-hcc-CC-CCC
Confidence 45699999999999888887653336899999999888 55555411100123578888888753 11 000 00 000
Q ss_pred Cccc--cchHHHHhhhhH-H-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 243 GVVH--MSLKRIWEETGC-E-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 243 ~~l~--~~~~~l~~l~~l-Q-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
--+. ..+... ...+ . +.++.+.+.|+|||.++.-.-| +.-....+..+++..
T Consensus 168 vIi~D~~dp~~~--~~~L~t~ef~~~~~~~L~pgGvlv~q~~s--~~~~~~~~~~i~~tl 223 (308)
T PLN02366 168 AIIVDSSDPVGP--AQELFEKPFFESVARALRPGGVVCTQAES--MWLHMDLIEDLIAIC 223 (308)
T ss_pred EEEEcCCCCCCc--hhhhhHHHHHHHHHHhcCCCcEEEECcCC--cccchHHHHHHHHHH
Confidence 0000 011100 0111 1 7889999999999999753322 222344555555543
No 190
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.0038 Score=60.56 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=45.6
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
++.+|.++|+...+|.+-|-||.|-.++..++ .|+++|+|.++..+ +++++.
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~ 69 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK 69 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh
Confidence 46778899999999999999999999998875 48899999999999 666665
No 191
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.11 E-value=0.0041 Score=60.15 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=83.1
Q ss_pred CCeEeeecccCcchHHHHHHhcCC--CcEEEEcCCchhh--HHhhccccccccCcceE-EEEEeccee------eecccC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYP--DYYCMDGASLLPV--LALNIRPYDTVLDIHAL-KLVKVGGSV------VYSTCS 235 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~--g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v-~~~~~Da~~------lDaPCS 235 (355)
--+|||+|||+|.--+-+....+. ..|..+|.++.-+ -+..++ . .|..++ +|.++|+.. +++.-
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~--~--~gL~~i~~f~~~dAfd~~~l~~l~p~P- 210 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIA--E--RGLEDIARFEQGDAFDRDSLAALDPAP- 210 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHH--H--cCCccceEEEecCCCCHhHhhccCCCC-
Confidence 348999999999988777665543 7899999999888 566665 3 355555 899999865 33321
Q ss_pred CCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEE
Q psy7769 236 LSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIE 307 (355)
Q Consensus 236 gsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~ 307 (355)
..++.. +-.. |....+- .+.|.....++.|||+|||+.=-+||.- +.|.++|.+|.+...|-+.
T Consensus 211 ~l~iVs-GL~ElF~Dn~lv-----~~sl~gl~~al~pgG~lIyTgQPwHPQl--e~IAr~LtsHr~g~~WvMR 275 (311)
T PF12147_consen 211 TLAIVS-GLYELFPDNDLV-----RRSLAGLARALEPGGYLIYTGQPWHPQL--EMIARVLTSHRDGKAWVMR 275 (311)
T ss_pred CEEEEe-cchhhCCcHHHH-----HHHHHHHHHHhCCCcEEEEcCCCCCcch--HHHHHHHhcccCCCceEEE
Confidence 000000 0000 1111111 1568888899999999999887787753 5788899888432334443
No 192
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.001 Score=61.85 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=70.1
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------eecccCCC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCSLS 237 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCSgs 237 (355)
+.+|+|+|+|+|-=++-+|-..+...|+-+|...+|+ |+...+ . ++.+|+++++..+.. .|.-|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~--e--L~L~nv~i~~~RaE~~~~~~~~~D~vt--- 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKK--E--LGLENVEIVHGRAEEFGQEKKQYDVVT--- 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHH--H--hCCCCeEEehhhHhhcccccccCcEEE---
Confidence 6899999999999999998666667899999999999 777766 4 577888888765543 34443
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEE
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVY 277 (355)
.+.++.+..+++-+..++|+||.++.
T Consensus 141 --------------sRAva~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 141 --------------SRAVASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred --------------eehccchHHHHHHHHHhcccCCcchh
Confidence 23445566889999999999988763
No 193
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.07 E-value=0.0015 Score=62.06 Aligned_cols=117 Identities=13% Similarity=0.042 Sum_probs=75.1
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV 230 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l 230 (355)
.++...++....-.+||+++++.|.-|+.+|..++ .|+|+++|.++.+. +++++++ .|. .+|+++.+|+..+
T Consensus 68 g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~----ag~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 68 GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK----AGVAHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----CCCCCceEEEeccHHHH
Confidence 34444444444455999999999999999998764 58999999999998 8888883 343 6789998887541
Q ss_pred -ecccCCCCC-ccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 231 -YSTCSLSPI-QNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 231 -DaPCSgsG~-t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
..-+ ..|- ...-++.| +.++ . .....++.++++|+|||.||.=..
T Consensus 144 L~~l~-~~~~~~~~fD~iFiDadK--~--~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 144 LDQMI-EDGKYHGTFDFIFVDADK--D--NYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHHHH-hccccCCcccEEEecCCH--H--HhHHHHHHHHHhcCCCeEEEEcCC
Confidence 1111 0010 00111111 1110 0 011667888999999999986544
No 194
>KOG1663|consensus
Probab=97.07 E-value=0.0019 Score=60.30 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=80.0
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEe
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~ 225 (355)
+=+.-.++...++..-...++||++.-+|.-++..|..++. |+|+++|+++.-. ..+..+ . .|. +.|.++.+
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k--~--agv~~KI~~i~g 132 (237)
T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK--L--AGVDHKITFIEG 132 (237)
T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH--h--ccccceeeeeec
Confidence 34555677777777667789999999999999999988754 9999999999988 333333 1 344 56788877
Q ss_pred ccee-eecccC--CCCCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 226 GGSV-VYSTCS--LSPIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 226 Da~~-lDaPCS--gsG~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
++.. +|---. ..| +.+.- +. |+..-. ...+++++++|+||.|++=.-++
T Consensus 133 ~a~esLd~l~~~~~~~-tfDfaFvDadK~nY~-------~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 133 PALESLDELLADGESG-TFDFAFVDADKDNYS-------NYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred chhhhHHHHHhcCCCC-ceeEEEEccchHHHH-------HHHHHHHhhcccccEEEEecccc
Confidence 7643 111100 111 22222 11 222111 56889999999999999965433
No 195
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.03 E-value=0.0017 Score=61.84 Aligned_cols=78 Identities=17% Similarity=0.006 Sum_probs=62.1
Q ss_pred EEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 149 YCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 149 ~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|+.|+. ..-.+..+++.+++.|||+++|+|..|..|+... .+|+++|.++..+ +++.+. ..++++++..
T Consensus 12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~ 83 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVING 83 (262)
T ss_dssp EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES
T ss_pred eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeec
Confidence 455644 4456777888899999999999999999999887 7999999999888 776665 2357899999
Q ss_pred cceeeeccc
Q psy7769 226 GGSVVYSTC 234 (355)
Q Consensus 226 Da~~lDaPC 234 (355)
|+..+|.+-
T Consensus 84 D~l~~~~~~ 92 (262)
T PF00398_consen 84 DFLKWDLYD 92 (262)
T ss_dssp -TTTSCGGG
T ss_pred chhccccHH
Confidence 998766653
No 196
>KOG1098|consensus
Probab=97.02 E-value=0.00081 Score=70.27 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=66.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh------HHhhccc----c---ccccCcceEEEEEeccee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV------LALNIRP----Y---DTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl------l~~~l~r----~---~~~~g~~~v~~~~~Da~~ 229 (355)
++++..|||+||||||+...+++.++. +.|+++|+-+-+. +.+-+.+ . .+ +......++..||
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~-l~t~~advVLhDg-- 118 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKI-LKTWKADVVLHDG-- 118 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHH-HHhCCCcEEeecC--
Confidence 568999999999999988888887754 7799999887543 1111110 0 00 0011123444554
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
|-..| ..|..+.. ..+.|- ..|+-|..+|+.||.+|--.| +-|.-.-+-+++.
T Consensus 119 ----apnVg------~~w~~DA~-~q~~L~l~al~LA~~~l~~~g~fvtkvf---rs~dy~~ll~v~~ 172 (780)
T KOG1098|consen 119 ----APNVG------GNWVQDAF-QQACLTLRALKLATEFLAKGGTFVTKVF---RSEDYNGLLRVFG 172 (780)
T ss_pred ----CCccc------hhHHHHHH-HhhHHHHHHHHHHHHHHHhcCccccccc---cCCcchHHHHHHH
Confidence 22222 12554432 222333 778889999999999654333 3344444444443
No 197
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.99 E-value=0.0014 Score=62.28 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=56.4
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
...++||+|||-|+.|..++... .+|+|.|.|+.|. |+++-- . +.+..+ +.+.| ...|+.+ .+-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~kg~--~-vl~~~~--w~~~~-~~fDvIs-cLN----- 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKKGF--T-VLDIDD--WQQTD-FKFDVIS-CLN----- 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhCCC--e-EEehhh--hhccC-CceEEEe-ehh-----
Confidence 35689999999999999999887 5799999999887 333111 0 011111 11111 1133332 000
Q ss_pred ccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEE
Q psy7769 244 VVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 244 ~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYs 278 (355)
+-.+..-+ .+|+.+.+.|+|+|+++.+
T Consensus 160 --------vLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 160 --------VLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred --------hhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 11111222 7899999999999999865
No 198
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.94 E-value=0.0053 Score=57.53 Aligned_cols=116 Identities=10% Similarity=-0.117 Sum_probs=71.3
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHh-h-cc----c--cccccCcceEEEEEecceeeec
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LAL-N-IR----P--YDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~-~-l~----r--~~~~~g~~~v~~~~~Da~~lDa 232 (355)
.+.+|.+||+.+||.|--...||..+ -.|+|+|+|+..+ +.+ + +. . ........++++.++|...++.
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 34467899999999999999999986 4799999999999 322 2 10 0 0000112467888999865442
Q ss_pred ccCCCCCccCCccccchHHHHhhhh-HH-HHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETG-CE-IEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~-lQ-~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+-...| .-++.|...-+..+.. +. +-.++..++|+|||+++.-|-...
T Consensus 118 ~~~~~~---~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 118 IANNLP---VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred cccccC---CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 111111 0111122222222211 11 678899999999999998876543
No 199
>KOG2361|consensus
Probab=96.92 E-value=0.0016 Score=61.25 Aligned_cols=100 Identities=16% Similarity=0.086 Sum_probs=67.6
Q ss_pred eEeeecccCcchHHHHHHhcCC--CcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---eecccCCCCCcc
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYP--DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---VYSTCSLSPIQN 241 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~--g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---lDaPCSgsG~t~ 241 (355)
+||.+|||-|+...-+.+..++ -+|+|+|.|+..+ ++++.. ....++.....|... ..++|.|+=
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~-----~~e~~~~afv~Dlt~~~~~~~~~~~sv--- 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG-----YDESRVEAFVWDLTSPSLKEPPEEGSV--- 145 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc-----cchhhhcccceeccchhccCCCCcCcc---
Confidence 8999999999999988887644 7899999999999 555554 122334433444332 667775431
Q ss_pred CCc-ccc-----chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 242 DGV-VHM-----SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 242 ~~~-l~~-----~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+.- +.| .|++ .|..+.+..++|||||.|++..--.
T Consensus 146 D~it~IFvLSAi~pek------~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEK------MQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred ceEEEEEEEeccChHH------HHHHHHHHHHHhCCCcEEEEeeccc
Confidence 222 111 2332 2378999999999999999875433
No 200
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.75 E-value=0.012 Score=54.84 Aligned_cols=113 Identities=12% Similarity=-0.022 Sum_probs=76.8
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
...+..+..+|+|+|.|.|..+..+++..+.-+++..|. +.-+ +++ .++|+++.+|.. -+.|. +.
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f-~~~P~-~D 160 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF-DPLPV-AD 160 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT-TCCSS-ES
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH-hhhcc-cc
Confidence 444566777999999999999999999888789999998 4444 333 235788888876 22232 11
Q ss_pred CCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCC--cEEEEEeCCCCCCCCHHHHH
Q psy7769 238 PIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVG--GSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 238 G~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpG--G~lVYsTCSl~~~ENE~vV~ 292 (355)
- ..-++ ++ |..+... .||+++.+.|+|| |+|+....-+.....+....
T Consensus 161 ~-~~l~~vLh~~~d~~~~------~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~ 212 (241)
T PF00891_consen 161 V-YLLRHVLHDWSDEDCV------KILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSA 212 (241)
T ss_dssp E-EEEESSGGGS-HHHHH------HHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHH
T ss_pred c-eeeehhhhhcchHHHH------HHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHH
Confidence 1 11222 33 6665444 7999999999999 99999988777666666554
No 201
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.75 E-value=0.002 Score=63.80 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=42.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeec
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
+.+|..+||+||+|||+|-.+++.+ ++|+|+|..+ +...+. ..++|.....|+....+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~---l~~~L~------~~~~V~h~~~d~fr~~p 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGP---MAQSLM------DTGQVEHLRADGFKFRP 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechh---cCHhhh------CCCCEEEEeccCcccCC
Confidence 4689999999999999999999875 6999999554 222222 23457777777655443
No 202
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.73 E-value=0.0023 Score=65.70 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=71.6
Q ss_pred CCeEeeecccCcchHHHHHHhc----CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL----YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~----~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
+-.|||+|||.|-.+...++.+ ...+|+|+|.++... +++.++ . .+. +.|+++++|.+.++.|.-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~--~--n~w~~~V~vi~~d~r~v~lpek---- 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN--A--NGWGDKVTVIHGDMREVELPEK---- 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH--H--TTTTTTEEEEES-TTTSCHSS-----
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH--h--cCCCCeEEEEeCcccCCCCCCc----
Confidence 4579999999999886665442 346899999999887 555544 2 222 569999999988666650
Q ss_pred ccCCccccchH--HHHhhhhHH-HHHHHHHhhccCCcEEEE--EeCCCCCCCCHHHHHHH
Q psy7769 240 QNDGVVHMSLK--RIWEETGCE-IEIKHALKLVKVGGSVVY--STCSLSPIQNDGVVHMS 294 (355)
Q Consensus 240 t~~~~l~~~~~--~l~~l~~lQ-~lL~~A~~~LkpGG~lVY--sTCSl~~~ENE~vV~~~ 294 (355)
-++.-+.. -+ -..++- +.|..+-++|||||+++= .|--+.|.+.+..-+..
T Consensus 259 ---vDIIVSElLGsf-g~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~ 314 (448)
T PF05185_consen 259 ---VDIIVSELLGSF-GDNELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEV 314 (448)
T ss_dssp ---EEEEEE---BTT-BTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHH
T ss_pred ---eeEEEEeccCCc-cccccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHH
Confidence 01110000 00 001122 789999999999999983 23345566666655554
No 203
>KOG0820|consensus
Probab=96.62 E-value=0.006 Score=58.44 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=78.0
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
.-.+++|+|.||.++-|||+.|..|.+.. .+|+|+|+++.++ +.++.+ . ....+..+++.+|....|-|-++.
T Consensus 52 ~ka~~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~--g-tp~~~kLqV~~gD~lK~d~P~fd~ 126 (315)
T KOG0820|consen 52 EKADLKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQ--G-TPKSGKLQVLHGDFLKTDLPRFDG 126 (315)
T ss_pred hccCCCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhc--C-CCccceeeEEecccccCCCcccce
Confidence 33468999999999999999999999886 7899999999999 888887 3 133466889999998888776544
Q ss_pred CCccCCc-cc----c---chHHHH--hhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 238 PIQNDGV-VH----M---SLKRIW--EETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 238 G~t~~~~-l~----~---~~~~l~--~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
-+++-.- +- + ....+. ....+| -+-|++++..=|...|+--|++
T Consensus 127 cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ--~Efa~RLva~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 127 CVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQ--REFALRLVARPGDSLYCRLSIN 180 (315)
T ss_pred eeccCCccccCHHHHHhcCCCCCcceeeeehh--hhhhhhhccCCCCchhceeehh
Confidence 3332111 10 0 000000 111233 2345555555578889887775
No 204
>PLN02823 spermine synthase
Probab=96.61 E-value=0.017 Score=57.20 Aligned_cols=125 Identities=13% Similarity=0.036 Sum_probs=75.3
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
++.+..+.| .+||-++.|.|+.+..+++.....+|+++|+++..+ +++.+.........++++++..||+.
T Consensus 96 ~~l~~~~~p-k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~ 174 (336)
T PLN02823 96 PALLHHPNP-KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRD 174 (336)
T ss_pred HHHhhCCCC-CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCC
Confidence 344444544 589999999999887777654446899999999999 66665410000123678888877754
Q ss_pred -------eecccCC-CCCccCCccccchHHHHhhhhHH-HHHH-HHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 -------VYSTCSL-SPIQNDGVVHMSLKRIWEETGCE-IEIK-HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 -------lDaPCSg-sG~t~~~~l~~~~~~l~~l~~lQ-~lL~-~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|++-.. .|. +..+ .. +.++ .+.+.|+|||.+|.-.-|.....+...+..+++.
T Consensus 175 ~~yDvIi~D~~dp~~~~~---------~~~L-----yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~t 238 (336)
T PLN02823 175 EKFDVIIGDLADPVEGGP---------CYQL-----YTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNT 238 (336)
T ss_pred CCccEEEecCCCccccCc---------chhh-----ccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHH
Confidence 5542100 010 0000 11 5676 7889999999988654443333344455555444
No 205
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.55 E-value=0.014 Score=53.80 Aligned_cols=45 Identities=16% Similarity=-0.026 Sum_probs=32.7
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...+++.+++..+|+|||-|.-.+++|...+-.+.+++|+.+...
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~ 79 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH 79 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH
Confidence 356688999999999999999888888665546799999999988
No 206
>KOG1975|consensus
Probab=96.44 E-value=0.008 Score=58.87 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=76.1
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccccc--CcceEEEEEeccee-
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVL--DIHALKLVKVGGSV- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~--g~~~v~~~~~Da~~- 229 (355)
|+|+-..+ ++++.|+||+||-||-.+-.-.. +-+.++++|+..--+ ++++.+.+.... -+-.+.++.+|-..
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 66666655 57999999999999977655432 237899999988777 554443110000 01124677777543
Q ss_pred -----e--ecc-cCCCCC-ccCCccc--cchH-HHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 -----V--YST-CSLSPI-QNDGVVH--MSLK-RIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 -----l--DaP-CSgsG~-t~~~~l~--~~~~-~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+ |.| | -+ +-...+| |..+ ... .+|+++.+.|||||.++-++- |-.||-+=|+.
T Consensus 185 ~l~d~~e~~dp~f---DivScQF~~HYaFetee~ar------~~l~Nva~~LkpGG~FIgTiP------dsd~Ii~rlr~ 249 (389)
T KOG1975|consen 185 RLMDLLEFKDPRF---DIVSCQFAFHYAFETEESAR------IALRNVAKCLKPGGVFIGTIP------DSDVIIKRLRA 249 (389)
T ss_pred HHHHhccCCCCCc---ceeeeeeeEeeeeccHHHHH------HHHHHHHhhcCCCcEEEEecC------cHHHHHHHHHh
Confidence 2 333 2 00 0011123 3222 111 679999999999999998764 45777777765
Q ss_pred h
Q psy7769 298 I 298 (355)
Q Consensus 298 ~ 298 (355)
.
T Consensus 250 ~ 250 (389)
T KOG1975|consen 250 G 250 (389)
T ss_pred c
Confidence 4
No 207
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.39 E-value=0.0046 Score=57.53 Aligned_cols=117 Identities=14% Similarity=-0.038 Sum_probs=70.2
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--H-Hhhccc--ccccc-----CcceEEEEEecceeee
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--L-ALNIRP--YDTVL-----DIHALKLVKVGGSVVY 231 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l-~~~l~r--~~~~~-----g~~~v~~~~~Da~~lD 231 (355)
+...++.+||+-+||.|.-...+|+.+ -.|+++|+|+..+ + +++... ..... ...+|.+.++|...++
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 346788899999999999999999875 5899999999999 3 222210 00000 1245788999986655
Q ss_pred cccCC-CCCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCC
Q psy7769 232 STCSL-SPIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 232 aPCSg-sG~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~E 286 (355)
+...| +....++. +. ..++. .++-.++..++|+|||++++.|-...+.+
T Consensus 111 ~~~~g~fD~iyDr~~l~Alpp~~------R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~ 162 (218)
T PF05724_consen 111 PEDVGKFDLIYDRTFLCALPPEM------RERYAQQLASLLKPGGRGLLITLEYPQGE 162 (218)
T ss_dssp GSCHHSEEEEEECSSTTTS-GGG------HHHHHHHHHHCEEEEEEEEEEEEES-CSC
T ss_pred hhhcCCceEEEEecccccCCHHH------HHHHHHHHHHHhCCCCcEEEEEEEcCCcC
Confidence 44310 00011222 11 12221 11668899999999999776665544333
No 208
>KOG4300|consensus
Probab=96.34 E-value=0.0061 Score=56.39 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=67.6
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEE-EEEeccee--------e
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALK-LVKVGGSV--------V 230 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~-~~~~Da~~--------l 230 (355)
+.......||.++||||.---. ...-+..+|+++|.++++- +.+.++ . ....++. ++.+|+.. +
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~--E--~k~~~~~~fvva~ge~l~~l~d~s~ 146 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAA--E--KKPLQVERFVVADGENLPQLADGSY 146 (252)
T ss_pred hcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHh--h--ccCcceEEEEeechhcCcccccCCe
Confidence 3333344789999999974322 2222336899999999998 555554 2 1223454 77777764 3
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
|+.--.+++ -+.+ -+ +.|++..++|||||++++-- +-...-+-..++++..
T Consensus 147 DtVV~TlvL-------CSve-------~~~k~L~e~~rlLRpgG~iifiE---Hva~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 147 DTVVCTLVL-------CSVE-------DPVKQLNEVRRLLRPGGRIIFIE---HVAGEYGFWNRILQQV 198 (252)
T ss_pred eeEEEEEEE-------eccC-------CHHHHHHHHHHhcCCCcEEEEEe---cccccchHHHHHHHHH
Confidence 322111110 0111 12 67999999999999999853 2233444455555544
No 209
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.33 E-value=0.013 Score=57.73 Aligned_cols=124 Identities=8% Similarity=-0.094 Sum_probs=73.1
Q ss_pred CCCCeEeeecccCcchHHHHHHhcC----CCcEEEEcCCchhh--HHhhccccccccCcceEEE--EEeccee-eecccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLY----PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKL--VKVGGSV-VYSTCS 235 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~----~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~--~~~Da~~-lDaPCS 235 (355)
.++..++|+|||.|.||..|+..+. ....+++|+|...| ..+++. . ...+.+.+ +.+|... ++..+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~--~--~~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP--L--GNFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh--h--ccCCCeEEEEEEecHHHHHhhccc
Confidence 5677999999999999998887552 25689999999999 555555 1 12233444 5555432 121111
Q ss_pred CCCCccCCccccchHHHHhhhhHH--HHHHHHHh-hccCCcEEEEEeCCCCCCCCHHHHHHHH
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCE--IEIKHALK-LVKVGGSVVYSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~-~LkpGG~lVYsTCSl~~~ENE~vV~~~L 295 (355)
..+...++.+.|--..+-++..-+ .+|+...+ .|+|||.++... ....+.++|..+-
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~---D~~k~~~~l~~AY 210 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL---DGCKDPDKVLRAY 210 (319)
T ss_pred ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec---CCCCCHHHHHHHh
Confidence 111011111223222233333333 78888888 999999999864 3335555555444
No 210
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.26 E-value=0.0077 Score=51.07 Aligned_cols=53 Identities=15% Similarity=0.050 Sum_probs=42.3
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
.|||+||+.|..+..++.....++|+++|.++..+ ++++++ . .+..++.+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~--~--n~~~~v~~~~~ 55 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK--L--NNLPNVVLLNA 55 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH--H--cCCCcEEEEEe
Confidence 48999999999999998887667999999999999 888877 3 23345665543
No 211
>KOG2730|consensus
Probab=96.24 E-value=0.0062 Score=56.75 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=48.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~ 229 (355)
.-+.|+|..||-||-|++.|... ..|+++|+++-++ +++|++ - .|+ +.|+|+++|...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNae--i--YGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAE--V--YGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccce--e--ecCCceeEEEechHHH
Confidence 45689999999999999988776 6899999999999 888998 4 355 478999998643
No 212
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.21 E-value=0.016 Score=51.04 Aligned_cols=75 Identities=8% Similarity=-0.113 Sum_probs=49.1
Q ss_pred EEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHH
Q psy7769 194 CMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKH 264 (355)
Q Consensus 194 ~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~ 264 (355)
+++|+|+.++ ++++.+... ..+..++.++.+|+.. +|+-.++.+ +....+.++.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-------------l~~~~d~~~~l~e 66 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA-RSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-------------LRNVVDRLRAMKE 66 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc-ccCCCceEEEEechhhCCCCCCCeeEEEecch-------------hhcCCCHHHHHHH
Confidence 4799999999 544443101 0112468899998764 444444443 1222233478999
Q ss_pred HHhhccCCcEEEEEeCCC
Q psy7769 265 ALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 265 A~~~LkpGG~lVYsTCSl 282 (355)
+.+.|||||.++....+.
T Consensus 67 i~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 67 MYRVLKPGSRVSILDFNK 84 (160)
T ss_pred HHHHcCcCeEEEEEECCC
Confidence 999999999999887764
No 213
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.01 E-value=0.0058 Score=57.35 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=65.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
+..+-.++||++||+|-..-.|-.+. .+++++|+|.+|+.+..-+ . .+. .+.+.|+...-..- +.+
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eK--g---~YD--~L~~Aea~~Fl~~~-----~~e 187 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEK--G---LYD--TLYVAEAVLFLEDL-----TQE 187 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhc--c---chH--HHHHHHHHHHhhhc-----cCC
Confidence 34456799999999999888877666 6899999999999211111 0 000 11112221100000 111
Q ss_pred Cc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 243 GV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 243 ~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
+- +.-..+-+--+..+..++-.+..+|+|||.+.||.=++.-+
T Consensus 188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 11 11112223334455588999999999999999998887544
No 214
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.99 E-value=0.0088 Score=60.16 Aligned_cols=92 Identities=23% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcc--eEEEEEeccee-----------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIH--ALKLVKVGGSV----------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~--~v~~~~~Da~~----------- 229 (355)
.+-+|||.-||+|--++..+.-+ +-.+|++||+|+..+ +++|++ . .+.. .+++.+.|+..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~--~--N~~~~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLE--L--NGLEDERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHH--H--CT-SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHh--h--ccccCceEEEehhhHHHHhhhccccCCE
Confidence 34589999999999999988764 337899999999999 899987 3 2332 47888877643
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
||.-+=|+- . ..|..|++.++.|| +++.|||=
T Consensus 125 IDlDPfGSp-----------~---------pfldsA~~~v~~gG-ll~vTaTD 156 (377)
T PF02005_consen 125 IDLDPFGSP-----------A---------PFLDSALQAVKDGG-LLCVTATD 156 (377)
T ss_dssp EEE--SS-------------H---------HHHHHHHHHEEEEE-EEEEEE--
T ss_pred EEeCCCCCc-----------c---------HhHHHHHHHhhcCC-EEEEeccc
Confidence 444442222 1 45999999999975 55667764
No 215
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.90 E-value=0.042 Score=53.62 Aligned_cols=112 Identities=16% Similarity=0.053 Sum_probs=65.8
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHH-hhccccccccCcc-eEEEEEecce-------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLA-LNIRPYDTVLDIH-ALKLVKVGGS------- 228 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~-~~l~r~~~~~g~~-~v~~~~~Da~------- 228 (355)
..-.+.+-.|.+|||+||+.|..+..|+..+ ...|+++|.+..-+++ +-++ ++ .|.. .+..+ ..+.
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~--~~-lg~~~~~~~l-plgvE~Lp~~~ 181 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIK--HF-LGQDPPVFEL-PLGVEDLPNLG 181 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHH--HH-hCCCccEEEc-CcchhhccccC
Confidence 3334445679999999999999999988775 3679999999876611 1112 11 1211 11111 0111
Q ss_pred eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 229 VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 229 ~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
..|..- ..|+ +.++..--..|......|++||.||.=|--+.-.++
T Consensus 182 ~FDtVF-~MGV------------LYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 182 AFDTVF-SMGV------------LYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred CcCEEE-Eeee------------hhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 133322 1232 222111116688888999999999988777655544
No 216
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.70 E-value=0.047 Score=49.17 Aligned_cols=38 Identities=16% Similarity=-0.059 Sum_probs=32.1
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|||+|||+|..+..++... ...++++|+++.++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i 49 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGV 49 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHH
Confidence 478899999999999988887653 35789999999887
No 217
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.50 E-value=0.034 Score=49.66 Aligned_cols=113 Identities=15% Similarity=0.047 Sum_probs=55.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc-cCcceEEEEEeccee-eecccCCCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV-LDIHALKLVKVGGSV-VYSTCSLSPI 239 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~-~g~~~v~~~~~Da~~-lDaPCSgsG~ 239 (355)
...|.+||++|||.|--++.++.+....+|++-|.++ -+ ++.|++ .+. ....++.+...|--. ++.....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~--~N~~~~~~~v~v~~L~Wg~~~~~~~~~--- 116 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIE--LNGSLLDGRVSVRPLDWGDELDSDLLE--- 116 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHH--TT--------EEEE--TTS-HHHHHHS---
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHH--hccccccccccCcEEEecCcccccccc---
Confidence 3468899999999998888888775557999999998 55 888888 311 011345554443211 1111100
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
....++..-.+-+..-.....+++...++++++|. +|..+...
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~-vl~~~~~R 159 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK-VLLAYKRR 159 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT-EEEEEE-S
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE-EEEEeCEe
Confidence 00111111111111111222678888889999988 55555554
No 218
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.47 E-value=0.072 Score=53.50 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=76.5
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCC--------------------------------C-------cEEEEcCCch
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYP--------------------------------D-------YYCMDGASLL 201 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~--------------------------------g-------~V~AvD~s~~ 201 (355)
+.+.+++..++|-.||+|...+.+|.+..+ + .++|+|+++.
T Consensus 186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r 265 (381)
T COG0116 186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR 265 (381)
T ss_pred HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence 336778889999999999999988876521 1 3789999999
Q ss_pred hh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCC--ccCCc-cccchHHHHhhhhHH-HHHHHHHhhccCCcE
Q psy7769 202 PV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPI--QNDGV-VHMSLKRIWEETGCE-IEIKHALKLVKVGGS 274 (355)
Q Consensus 202 Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~--t~~~~-l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~ 274 (355)
.+ ++.|.++ .|. .-|+|.+.|+..+-.|--..|+ ++.+- .+.... .....|. ++...+.+.++--++
T Consensus 266 ~i~~Ak~NA~~----AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~--~~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 266 HIEGAKANARA----AGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE--ALVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred HHHHHHHHHHh----cCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh--hhHHHHHHHHHHHHHHHhcCCce
Confidence 99 8999984 455 4578999988765555211121 22111 222111 2223355 677777788887778
Q ss_pred EEEEeCC
Q psy7769 275 VVYSTCS 281 (355)
Q Consensus 275 lVYsTCS 281 (355)
.|++|-.
T Consensus 340 ~v~tt~e 346 (381)
T COG0116 340 YVFTTSE 346 (381)
T ss_pred EEEEccH
Confidence 8887643
No 219
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.016 Score=54.63 Aligned_cols=37 Identities=24% Similarity=0.112 Sum_probs=33.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
+|..+||++|.+||+|--+++.+. .+|+|+|+....+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql 115 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQL 115 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCcc
Confidence 688999999999999999988753 6899999999877
No 220
>KOG2671|consensus
Probab=95.40 E-value=0.03 Score=55.34 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=77.2
Q ss_pred echh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh---------HHhhccccccccCcceE
Q psy7769 151 MDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV---------LALNIRPYDTVLDIHAL 220 (355)
Q Consensus 151 QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl---------l~~~l~r~~~~~g~~~v 220 (355)
+|+. |.+-+-...++||+.|.|=..|+|+.-...|.-+ +.|++-|++-..+ ++.|++ +|.....-+
T Consensus 192 mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFk--QYg~~~~fl 267 (421)
T KOG2671|consen 192 MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFK--QYGSSSQFL 267 (421)
T ss_pred cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHH--HhCCcchhh
Confidence 6654 4555566678999999999999999877766665 8899999986655 556777 432111111
Q ss_pred EE-------------EEecceeeecccCCCCC--ccCCc-----ccc----------chHHHHhhhhHH-HHHHHHHhhc
Q psy7769 221 KL-------------VKVGGSVVYSTCSLSPI--QNDGV-----VHM----------SLKRIWEETGCE-IEIKHALKLV 269 (355)
Q Consensus 221 ~~-------------~~~Da~~lDaPCSgsG~--t~~~~-----l~~----------~~~~l~~l~~lQ-~lL~~A~~~L 269 (355)
.+ ...|+..+|||- |+ ..+.. ++. .......+..+- .+|.-+.+.|
T Consensus 268 dvl~~D~sn~~~rsn~~fDaIvcDPPY---GVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L 344 (421)
T KOG2671|consen 268 DVLTADFSNPPLRSNLKFDAIVCDPPY---GVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL 344 (421)
T ss_pred heeeecccCcchhhcceeeEEEeCCCc---chhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh
Confidence 22 235667799997 32 01110 111 111122222333 8999999999
Q ss_pred cCCcEEEEEeC
Q psy7769 270 KVGGSVVYSTC 280 (355)
Q Consensus 270 kpGG~lVYsTC 280 (355)
.-||++|+=--
T Consensus 345 ~~ggrlv~w~p 355 (421)
T KOG2671|consen 345 VDGGRLVFWLP 355 (421)
T ss_pred hcCceEEEecC
Confidence 99999997433
No 221
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.39 E-value=0.067 Score=50.62 Aligned_cols=123 Identities=17% Similarity=0.080 Sum_probs=76.5
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
++.++.+ ...+||=+|.|.|+.+..++..-...+|+++|+++.-+ +++.+.........++++++..||..
T Consensus 69 ~~~~~~~-~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 69 PPLLLHP-NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHHSS-ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred hHhhcCC-CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 3455555 45699999999999888877654347899999999988 44444310000123578888888743
Q ss_pred --------eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 --------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 --------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|++- ..|. ... -.. +.++.+.+.|+|||.++.-..| +..++..++.+.+..
T Consensus 148 ~~~yDvIi~D~~d-p~~~---------~~~-----l~t~ef~~~~~~~L~~~Gv~v~~~~~--~~~~~~~~~~i~~tl 208 (246)
T PF01564_consen 148 EEKYDVIIVDLTD-PDGP---------APN-----LFTREFYQLCKRRLKPDGVLVLQAGS--PFLHPELFKSILKTL 208 (246)
T ss_dssp ST-EEEEEEESSS-TTSC---------GGG-----GSSHHHHHHHHHHEEEEEEEEEEEEE--TTTTHHHHHHHHHHH
T ss_pred CCcccEEEEeCCC-CCCC---------ccc-----ccCHHHHHHHHhhcCCCcEEEEEccC--cccchHHHHHHHHHH
Confidence 34432 1110 000 011 7788999999999999987633 345677777766654
No 222
>KOG3010|consensus
Probab=95.36 E-value=0.091 Score=49.70 Aligned_cols=117 Identities=9% Similarity=-0.059 Sum_probs=65.5
Q ss_pred hCCCCCC-eEeeecccCcchHHH-HHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------e
Q psy7769 162 LNIRPYD-TVLDMCAAPGGKTLV-ALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------V 230 (355)
Q Consensus 162 L~~~pG~-~VLD~CAgPGgKT~~-la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------l 230 (355)
....+|. ..+|++||+| +|+. +|... -.|+|.|+++.+| +++.-.. .| .. ........+... |
T Consensus 28 a~~~~~h~~a~DvG~G~G-qa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~-~y-~~-t~~~ms~~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 28 ASRTEGHRLAWDVGTGNG-QAARGIAEHY--KEVIATDVSEAMLKVAKKHPPV-TY-CH-TPSTMSSDEMVDLLGGEESV 101 (261)
T ss_pred HhhCCCcceEEEeccCCC-cchHHHHHhh--hhheeecCCHHHHHHhhcCCCc-cc-cc-CCccccccccccccCCCcce
Confidence 3344555 8999999999 5554 45553 6899999999999 4433321 11 01 011222222111 4
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC-CCCCCHHHHHHHHHhh
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL-SPIQNDGVVHMSLKRI 298 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl-~~~ENE~vV~~~L~~~ 298 (355)
|..-++-. +||. .+.+..+.|.+.||+.|-++-.=|.- ...-+.++..-+++.+
T Consensus 102 DlI~~Aqa------~HWF--------dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~ 156 (261)
T KOG3010|consen 102 DLITAAQA------VHWF--------DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLY 156 (261)
T ss_pred eeehhhhh------HHhh--------chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHh
Confidence 43322111 4443 22266889999999888333222222 6667777777777654
No 223
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=95.23 E-value=0.022 Score=56.06 Aligned_cols=44 Identities=11% Similarity=-0.065 Sum_probs=39.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
++.+|||+|||+|+....++......+++|+|+++..+ +++|++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~ 159 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIIS 159 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 56899999999999998888776667999999999999 888887
No 224
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.19 E-value=0.33 Score=44.76 Aligned_cols=174 Identities=15% Similarity=0.102 Sum_probs=89.3
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HH--hhccccccccCcceEEEEEecceeeecccCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LA--LNIRPYDTVLDIHALKLVKVGGSVVYSTCSL 236 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~--~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSg 236 (355)
.+++||++|+|+--|.|.+|..++..+ .+|+|+++=..+... .+ .++.++.......|++.+-.+-..+++|---
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~ 123 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL 123 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence 368999999999999999999998765 459999886555432 11 1111100001223444443333334444322
Q ss_pred CCCcc--CCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC-----------CCCHHHHHHHHHhhhhcc
Q psy7769 237 SPIQN--DGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP-----------IQNDGVVHMSLKRIWEET 302 (355)
Q Consensus 237 sG~t~--~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~-----------~ENE~vV~~~L~~~~~~~ 302 (355)
.+... --| ++... + .-....+....+++.|||||.++.-.-...+ --++.+|....+. .
T Consensus 124 d~~~~~~~yhdmh~k~--i-~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~vea----a 196 (238)
T COG4798 124 DLVPTAQNYHDMHNKN--I-HPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEA----A 196 (238)
T ss_pred cccccchhhhhhhccc--c-CcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHh----h
Confidence 22100 000 11100 0 0001116788999999999999875433333 2344555544443 2
Q ss_pred CceEEEecccccccccccccccccCCCccEEEEec-CCCCCCCceEEEEEEEc
Q psy7769 303 GCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQP-HLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P-~~~~~~~gfFia~l~r~ 354 (355)
|+.++-. +..+. .|.. .+|..++| ...+..| -|+=+|+|.
T Consensus 197 GFkl~ae--S~ila--------Np~D-~~~i~v~dp~~rGetD-rf~~kF~Kp 237 (238)
T COG4798 197 GFKLEAE--SEILA--------NPDD-PRGIWVFDPTIRGETD-RFTLKFRKP 237 (238)
T ss_pred cceeeee--ehhhc--------CCCC-CCceeecCccccCccc-eeEEEeecC
Confidence 4343321 11111 1222 45666444 4444444 888888875
No 225
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.13 E-value=0.072 Score=55.65 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=42.3
Q ss_pred EechhcHHHHHhhCC-C-----CCCeEeeecccCcchHHHHHHhcC--------CCcEEEEcCCchhh--HHhhcc
Q psy7769 150 CMDGASLLPVLALNI-R-----PYDTVLDMCAAPGGKTLVALQTLY--------PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~-~-----pG~~VLD~CAgPGgKT~~la~~~~--------~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
..+.+..++-.++.. . .+.+|||.|||+|+..+.++..+. .-.++++|+++..+ ++.++.
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 344555555444432 1 345899999999999998886542 14689999999998 666765
No 226
>KOG1499|consensus
Probab=95.07 E-value=0.081 Score=52.34 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=70.0
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcc-eEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIH-ALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~-~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
-.|-.|||++||+|-.+...|+.+ ..+|+|+|-|.-.- +.+.++ . .+.. .|+++.+....+..|- .
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~--~--N~~~~ii~vi~gkvEdi~LP~-------e 126 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVK--D--NGLEDVITVIKGKVEDIELPV-------E 126 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHH--h--cCccceEEEeecceEEEecCc-------c
Confidence 368899999999999999888886 47899999987666 666555 3 2333 3677777666655551 0
Q ss_pred Cc-cc---cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 243 GV-VH---MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 243 ~~-l~---~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
.. +. |--.-+.--+.+-.+|-.==++|+|||.+.=++|+++-
T Consensus 127 KVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 127 KVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred ceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEE
Confidence 00 11 32211111112224455555799999999999998753
No 227
>KOG1500|consensus
Probab=95.02 E-value=0.072 Score=52.67 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=65.6
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV 244 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~ 244 (355)
.|..|||++||+|..+..+|+.+ ..+|+|++.|.-.- +++.++ .+. -..+|.++.+....+..|--..-+....-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~--~N~-~~~rItVI~GKiEdieLPEk~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVA--SNN-LADRITVIPGKIEDIELPEKVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHh--cCC-ccceEEEccCccccccCchhccEEEeccc
Confidence 47789999999999998888875 36899999987544 665555 311 11456666554443333321000000000
Q ss_pred --cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe--CCCCCCCCHHH
Q psy7769 245 --VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST--CSLSPIQNDGV 290 (355)
Q Consensus 245 --l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT--CSl~~~ENE~v 290 (355)
+.++..-+ +---+|.++|||.|.+.=+. --+-|.-+|..
T Consensus 253 G~mL~NERML-------EsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~L 295 (517)
T KOG1500|consen 253 GYMLVNERML-------ESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQL 295 (517)
T ss_pred hhhhhhHHHH-------HHHHHHHhhcCCCCcccCcccceeecccchHHH
Confidence 11222111 33557889999999886432 33445556654
No 228
>KOG3420|consensus
Probab=94.75 E-value=0.022 Score=50.09 Aligned_cols=44 Identities=7% Similarity=-0.128 Sum_probs=35.9
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
-.|..++|+|||.|..+++.+ +.....|+++|+++..+ ..+|+.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNae 92 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAE 92 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchH
Confidence 368899999999999884443 33447899999999999 788887
No 229
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.74 E-value=0.14 Score=50.80 Aligned_cols=97 Identities=25% Similarity=0.231 Sum_probs=58.4
Q ss_pred CCCCCCeEeeecccCcch-HHHHHHhcCCCcEEEEcCCchhh-HHhh-ccccccccCc-ce-E-----EEEEecceeeec
Q psy7769 163 NIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLPV-LALN-IRPYDTVLDI-HA-L-----KLVKVGGSVVYS 232 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgK-T~~la~~~~~g~V~AvD~s~~Rl-l~~~-l~r~~~~~g~-~~-v-----~~~~~Da~~lDa 232 (355)
..+++++|+=+||||=|. +.++++..+..+|+++|.++.|+ +.+. ... ..+... .. . ....+.+..+=.
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-DVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-eEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 345666999999999555 45667777778999999999999 5444 320 000000 00 0 011111111222
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
-|||+. ..+..|+++++|||++++.--.
T Consensus 244 e~~G~~---------------------~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 244 EAVGSP---------------------PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ECCCCH---------------------HHHHHHHHHhcCCCEEEEEecc
Confidence 344322 4588999999999999986444
No 230
>KOG0024|consensus
Probab=94.64 E-value=0.31 Score=48.03 Aligned_cols=106 Identities=18% Similarity=0.125 Sum_probs=68.1
Q ss_pred EEEechhcH-HHHHhhCCCCCCeEeeecccCcchHH-HHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEE-
Q psy7769 148 YYCMDGASL-LPVLALNIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLV- 223 (355)
Q Consensus 148 ~~~QD~aS~-l~~~~L~~~pG~~VLD~CAgPGgKT~-~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~- 223 (355)
-.+|..|-. -+...-++++|.+||=++|||=|..+ ..|+.++-.+|+..|+++.|+ +.+.+- ...+...
T Consensus 150 Al~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~G-------a~~~~~~~ 222 (354)
T KOG0024|consen 150 ALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFG-------ATVTDPSS 222 (354)
T ss_pred ccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhC-------CeEEeecc
Confidence 345554422 33445578999999999999966654 456667778999999999999 544443 1111111
Q ss_pred -------------Eecc---eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 224 -------------KVGG---SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 224 -------------~~Da---~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..++ ..+---|||.. .-++.|+..++.||++|-.-|-
T Consensus 223 ~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~---------------------~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 223 HKSSPQELAELVEKALGKKQPDVTFDCSGAE---------------------VTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred ccccHHHHHHHHHhhccccCCCeEEEccCch---------------------HHHHHHHHHhccCCEEEEeccC
Confidence 1122 11334566654 3477889999999998876554
No 231
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.33 E-value=0.16 Score=50.76 Aligned_cols=86 Identities=19% Similarity=0.128 Sum_probs=62.5
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------------ee
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------------VY 231 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------------lD 231 (355)
.-.|+|.-+|+|--++.+|.-...-+|++||++++.. +++|++ . ....+..+++.|+-. +|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~--~--N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR--L--NSGEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHH--h--cCcccceeecchHHHHHHhcCCCccEEecC
Confidence 6799999999999999988655434899999999999 888988 3 123445555555421 44
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
|= ||- . ..+..|++.++.||.|..+
T Consensus 129 PF--GSP-----------a---------PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 PF--GSP-----------A---------PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CC--CCC-----------c---------hHHHHHHHHhhcCCEEEEE
Confidence 32 221 1 3488999999998888774
No 232
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.22 E-value=0.15 Score=48.15 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=46.5
Q ss_pred cHHHHHhhCCCCCC--eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-----ceEEEEEe
Q psy7769 155 SLLPVLALNIRPYD--TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-----HALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L~~~pG~--~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-----~~v~~~~~ 225 (355)
....+.+.++++|. +|||++||-|.=++.+|..+ ++|+++|.|+-.. ++.-++++..-... .++++++.
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 45667778888775 99999999999999999764 6899999998777 55555432100111 46888888
Q ss_pred ccee
Q psy7769 226 GGSV 229 (355)
Q Consensus 226 Da~~ 229 (355)
|+..
T Consensus 140 d~~~ 143 (234)
T PF04445_consen 140 DALE 143 (234)
T ss_dssp -CCC
T ss_pred CHHH
Confidence 8765
No 233
>PRK04148 hypothetical protein; Provisional
Probab=94.16 E-value=0.096 Score=45.26 Aligned_cols=38 Identities=3% Similarity=-0.273 Sum_probs=30.5
Q ss_pred CCCCCeEeeecccCcc-hHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAPGG-KTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGg-KT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...+.+|||+|+|.|. .+..|++.+ ..|+|+|+++.++
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV 52 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAV 52 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHH
Confidence 3457899999999996 555666554 6899999999987
No 234
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.12 E-value=0.36 Score=46.81 Aligned_cols=116 Identities=14% Similarity=-0.012 Sum_probs=75.4
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--- 229 (355)
-..++....+.| .+||=++-|.|+.+-.++....-.+++.+|+++.-+ .++.+.-.......+++.++..||..
T Consensus 66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~ 144 (282)
T COG0421 66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR 144 (282)
T ss_pred HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH
Confidence 334455556777 599999999999998888876668999999999988 55555411100113678888888764
Q ss_pred -----eecccCCCCC-ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 -----VYSTCSLSPI-QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 -----lDaPCSgsG~-t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.|+-+.-+.- .+.....++. +.++.+.+.|+++|.+|.-+=|
T Consensus 145 ~~~~~fDvIi~D~tdp~gp~~~Lft~----------eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 145 DCEEKFDVIIVDSTDPVGPAEALFTE----------EFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred hCCCcCCEEEEcCCCCCCcccccCCH----------HHHHHHHHhcCCCcEEEEecCC
Confidence 3333321110 0000000111 6688999999999999988555
No 235
>KOG2078|consensus
Probab=93.88 E-value=0.034 Score=56.28 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=50.6
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~ 229 (355)
.++|+.|-|+|||-|-.++-++..+ .+|+|||.++..+ |+.|+. .+-..-.++++.+.||..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~--lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIK--LNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhcc--ccccchhheeeecccHHH
Confidence 4789999999999999999888765 7999999999999 999988 311122458888888864
No 236
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=93.81 E-value=0.36 Score=52.45 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=47.8
Q ss_pred CCCCeEeeecccCcchHHHHHHhcC------------------------------------------CCcEEEEcCCchh
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLY------------------------------------------PDYYCMDGASLLP 202 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~------------------------------------------~g~V~AvD~s~~R 202 (355)
++++.++|-+||+|...+.+|.+.. ..+|+|+|+++..
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 5789999999999999988775411 1369999999999
Q ss_pred h--HHhhccccccccCc-ceEEEEEecceee
Q psy7769 203 V--LALNIRPYDTVLDI-HALKLVKVGGSVV 230 (355)
Q Consensus 203 l--l~~~l~r~~~~~g~-~~v~~~~~Da~~l 230 (355)
+ ++.|+. . .|. ..+.+.+.|...+
T Consensus 269 v~~A~~N~~--~--~g~~~~i~~~~~D~~~~ 295 (702)
T PRK11783 269 IQAARKNAR--R--AGVAELITFEVKDVADL 295 (702)
T ss_pred HHHHHHHHH--H--cCCCcceEEEeCChhhc
Confidence 9 889998 3 355 3477877777554
No 237
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.78 E-value=0.091 Score=48.96 Aligned_cols=101 Identities=15% Similarity=-0.016 Sum_probs=63.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce-EEEEEecceeeecccCCCCCccC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA-LKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~-v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
...+.||++||-|-.|-+++.-. -.+|-.+|..++-+ +++.+. . +... ..+.+.......|+ ..+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~--~---~~~~v~~~~~~gLQ~f~P~------~~~ 122 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLG--K---DNPRVGEFYCVGLQDFTPE------EGK 122 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTC--C---GGCCEEEEEES-GGG----------TT-
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhc--c---cCCCcceEEecCHhhccCC------CCc
Confidence 35699999999999998775432 16899999999988 666655 2 1111 23332222222222 011
Q ss_pred CccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEE
Q psy7769 243 GVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYs 278 (355)
=++.|.++-+-.++.-+ +.|+++...|+|||.||.=
T Consensus 123 YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 123 YDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 11568888888888888 9999999999999999964
No 238
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=93.65 E-value=0.25 Score=45.66 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=71.8
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEE-EEEecceeeecccCCC-CC-c
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALK-LVKVGGSVVYSTCSLS-PI-Q 240 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~-~~~~Da~~lDaPCSgs-G~-t 240 (355)
.+.+||+++||+|-.+.+.|+.++.-.-.--|.+...+ +...+. . .+.+|+. .+..|...-+-|.... +. .
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~--~--~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~ 100 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIA--E--AGLPNVRPPLALDVSAPPWPWELPAPLSP 100 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHH--h--cCCcccCCCeEeecCCCCCccccccccCC
Confidence 34469999999999999999988766677888888886 555554 2 2334432 2233432110111000 00 0
Q ss_pred cCCc-------cccchHHHHhhhhHHHHHHHHHhhccCCcEEE-EEeCCC---CCCCCHHHHHHHHHhh
Q psy7769 241 NDGV-------VHMSLKRIWEETGCEIEIKHALKLVKVGGSVV-YSTCSL---SPIQNDGVVHMSLKRI 298 (355)
Q Consensus 241 ~~~~-------l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lV-YsTCSl---~~~ENE~vV~~~L~~~ 298 (355)
..-+ ++..++. ..+.+++.|.++|++||.|+ |---.. +..|....-+..|+..
T Consensus 101 ~~~D~i~~~N~lHI~p~~-----~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 101 ESFDAIFCINMLHISPWS-----AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred CCcceeeehhHHHhcCHH-----HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence 0001 1112221 12288999999999999987 544443 3345556677777753
No 239
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.63 E-value=0.1 Score=47.77 Aligned_cols=39 Identities=18% Similarity=-0.037 Sum_probs=32.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
++||.+|||+|||.|..-.+|.+. .+...+++|+++..+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v 49 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNV 49 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHH
Confidence 578999999999999877777664 347899999999877
No 240
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.51 E-value=0.27 Score=45.36 Aligned_cols=111 Identities=13% Similarity=-0.001 Sum_probs=75.2
Q ss_pred EeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-eec------cc-CCCC
Q psy7769 170 VLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-VYS------TC-SLSP 238 (355)
Q Consensus 170 VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-lDa------PC-SgsG 238 (355)
|.|+||==|.....|++.....+++|+|+++.-+ ++++++ + .+. ..|++..+||.. +++ -. .|.|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~--~--~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA--K--YGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH--H--TT-TTTEEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCcccEEEEECCcccccCCCCCCCEEEEecCC
Confidence 6899999999999999876556899999999999 899998 4 243 568999999864 211 11 2333
Q ss_pred CccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEec
Q psy7769 239 IQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKD 310 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~ 310 (355)
. .+- +||++....++....+|. | |..+...++.+|..+ |+.+.-..
T Consensus 77 G-----------------~lI~~ILe~~~~~~~~~~~lIL--q---P~~~~~~LR~~L~~~----gf~I~~E~ 123 (205)
T PF04816_consen 77 G-----------------ELIIEILEAGPEKLSSAKRLIL--Q---PNTHAYELRRWLYEN----GFEIIDED 123 (205)
T ss_dssp H-----------------HHHHHHHHHTGGGGTT--EEEE--E---ESS-HHHHHHHHHHT----TEEEEEEE
T ss_pred H-----------------HHHHHHHHhhHHHhccCCeEEE--e---CCCChHHHHHHHHHC----CCEEEEeE
Confidence 1 122 889999888776556665 3 447899999999864 55554433
No 241
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.33 E-value=0.14 Score=43.96 Aligned_cols=46 Identities=13% Similarity=-0.093 Sum_probs=37.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc----CCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL----YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~----~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
..+...|+|+|||-|..+..++..+ .+-.|+++|.++... +.++.+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 3678899999999999999999832 347899999999888 544444
No 242
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.59 E-value=0.14 Score=49.22 Aligned_cols=69 Identities=14% Similarity=0.034 Sum_probs=46.3
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEE----EEEecceeeecccCCCC
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALK----LVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~----~~~~Da~~lDaPCSgsG 238 (355)
+|+|++||.||.+..+.+.+ --.|+|+|+++..+ .+.|....-+...+..+. .-..|....++||.+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhh
Confidence 69999999999988877654 24689999999999 777765211111122221 12345566999997765
No 243
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.26 E-value=0.13 Score=44.82 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=53.9
Q ss_pred cEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecce---------eeecccCCCCCccCCccccchHHHHhhhhHH
Q psy7769 192 YYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGS---------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCE 259 (355)
Q Consensus 192 ~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~---------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ 259 (355)
+|+|+|+.+..+ .+++++ . .+. .++.++...=. .+|+-+=.+|....++ ..+.....--
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~--~--~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggD-----k~i~T~~~TT 71 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLE--E--AGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGD-----KSITTKPETT 71 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHH--H--TT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS------TTSB--HHHH
T ss_pred CEEEEECHHHHHHHHHHHHH--h--cCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCC-----CCCCcCcHHH
Confidence 589999999999 777777 3 233 35666653321 1444443334210000 0111111111
Q ss_pred -HHHHHHHhhccCCcEEEEEeCCCCC--CCCHHHHHHHHHhh
Q psy7769 260 -IEIKHALKLVKVGGSVVYSTCSLSP--IQNDGVVHMSLKRI 298 (355)
Q Consensus 260 -~lL~~A~~~LkpGG~lVYsTCSl~~--~ENE~vV~~~L~~~ 298 (355)
..|+.|+++|+|||.|+...-.=++ .|..+.|..|++..
T Consensus 72 l~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL 113 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 6799999999999999987777676 24445556666653
No 244
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.15 E-value=0.21 Score=46.67 Aligned_cols=58 Identities=17% Similarity=-0.043 Sum_probs=41.4
Q ss_pred chhcHHHHHhhCCCC---CCeEeeecccCcchHHHHHHhcCC--CcEEEEcCCchhh--HHhhcc
Q psy7769 152 DGASLLPVLALNIRP---YDTVLDMCAAPGGKTLVALQTLYP--DYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 152 D~aS~l~~~~L~~~p---G~~VLD~CAgPGgKT~~la~~~~~--g~V~AvD~s~~Rl--l~~~l~ 209 (355)
-.+|-+...+|...+ .-.++|-|||.|+..+.+.-+... ..|+|-|+++..+ +++|+.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 455666666665443 338999999999998887765432 6899999999999 777875
No 245
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=91.99 E-value=0.13 Score=47.39 Aligned_cols=57 Identities=14% Similarity=0.030 Sum_probs=43.4
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.|-+|||+|||+|--++..+..+ ...|++.|+.+... ++-|.+ . +.-++.++..|..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~--a---ngv~i~~~~~d~~ 137 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAA--A---NGVSILFTHADLI 137 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchh--h---ccceeEEeecccc
Confidence 58899999999999887776654 36899999998777 777777 3 3345677777753
No 246
>KOG1253|consensus
Probab=91.82 E-value=0.11 Score=53.68 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=65.2
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG------------ 227 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da------------ 227 (355)
-.++-+|||+-+|+|--++..|..++. +.|+|+|.++..+ .++|++ . .+. ..|+....|+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~--~--N~v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVE--L--NGVEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhh--h--cCchhhcccccchHHHHHHhcccccc
Confidence 346779999999999999999986654 7899999999999 888887 2 122 2233444443
Q ss_pred ----eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 ----SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ----~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+||-=|.+ ..|+.|++.++.||. ++.|||=
T Consensus 183 ~FDvIDLDPyGs~s----------------------~FLDsAvqav~~gGL-L~vT~TD 218 (525)
T KOG1253|consen 183 FFDVIDLDPYGSPS----------------------PFLDSAVQAVRDGGL-LCVTCTD 218 (525)
T ss_pred ccceEecCCCCCcc----------------------HHHHHHHHHhhcCCE-EEEEecc
Confidence 3355432111 459999999999875 5668873
No 247
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.62 E-value=1.9 Score=33.76 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=58.7
Q ss_pred EeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh-H-HhhccccccccCcceEEEEEeccee----------eecccCC
Q psy7769 170 VLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV-L-ALNIRPYDTVLDIHALKLVKVGGSV----------VYSTCSL 236 (355)
Q Consensus 170 VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl-l-~~~l~r~~~~~g~~~v~~~~~Da~~----------lDaPCSg 236 (355)
++|++||+|..+ .++..... ..++++|.+...+ . ..... . .+...+.+...|... +|..++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE--G--AGLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh--h--cCCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999987 55555433 3788899999888 4 22211 0 011113444444322 2222211
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
.. ..+.. ....+..+.+.++|||.+++++........
T Consensus 127 ~~------~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (257)
T COG0500 127 LV------LHLLP--------PAKALRELLRVLKPGGRLVLSDLLRDGLLE 163 (257)
T ss_pred ee------hhcCC--------HHHHHHHHHHhcCCCcEEEEEeccCCCCcc
Confidence 11 00111 227789999999999999999888765544
No 248
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.39 E-value=0.87 Score=47.44 Aligned_cols=146 Identities=17% Similarity=0.119 Sum_probs=87.0
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC----CCcEEEEcCCchhh--HHhhccccccccCcc-eE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY----PDYYCMDGASLLPV--LALNIRPYDTVLDIH-AL 220 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~----~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v 220 (355)
||-=-.-+-+.+.+|.|+++.+|+|-|||+||.-+..+..+. ...+++.|++.... .+-|+- +.|+. ++
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~----lhgi~~~~ 243 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI----LHGIEGDA 243 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH----HhCCCccc
Confidence 554444566778888889999999999999999988887653 26699999988877 333332 12222 11
Q ss_pred EE-----------------EEecceeeecccCCCCCccCC--c---cccchHH-HHhhhhH-HHHHHHHHhhccCCcE--
Q psy7769 221 KL-----------------VKVGGSVVYSTCSLSPIQNDG--V---VHMSLKR-IWEETGC-EIEIKHALKLVKVGGS-- 274 (355)
Q Consensus 221 ~~-----------------~~~Da~~lDaPCSgsG~t~~~--~---l~~~~~~-l~~l~~l-Q~lL~~A~~~LkpGG~-- 274 (355)
.+ -.+|...-.||-|+.|..+.. . .++.... ......- -.-+.|.+..|+|||+
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 11 112334467898866632221 1 1100000 0000000 1457888889998764
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 275 VVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 275 lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|...-.++..-+|..|++.|-.
T Consensus 324 ivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 324 IVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EEecCCcCcCCCchHHHHHHHHh
Confidence 33445555555589999988754
No 249
>KOG3115|consensus
Probab=91.10 E-value=0.47 Score=44.01 Aligned_cols=109 Identities=8% Similarity=-0.078 Sum_probs=64.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc---cCcceEEEEEeccee-----------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV---LDIHALKLVKVGGSV----------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~---~g~~~v~~~~~Da~~----------- 229 (355)
..-.+.|++||-||....++...+...|.+.++.-.=. ++.+++.++.. -...|+-+....+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 44579999999999999999887777788888765443 44444422100 113555555544432
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-+.-| ..+.|. .. +......++ .++.+-.-+|++||.++++|=-.
T Consensus 140 skmff~-----fpdpHf--k~-~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFL-----FPDPHF--KA-RKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ccceee-----cCChhH--hh-hhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 12222 222221 11 111111223 77888888999999999887443
No 250
>PRK11524 putative methyltransferase; Provisional
Probab=90.63 E-value=0.32 Score=46.77 Aligned_cols=43 Identities=14% Similarity=-0.062 Sum_probs=32.9
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+||.|||-++|+|..+ .+|..++ -+-+++|+++.-+ +++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~-~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTG-AVAKASG-RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHH-HHHHHcC-CCEEEEeCCHHHHHHHHHHHH
Confidence 68999999999999744 3444432 5799999999888 666654
No 251
>KOG3178|consensus
Probab=90.21 E-value=0.87 Score=45.19 Aligned_cols=105 Identities=13% Similarity=-0.035 Sum_probs=68.0
Q ss_pred HhhCCCCC----CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 160 LALNIRPY----DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 160 ~~L~~~pG----~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
..+....| ...+|+++|.|..+-++....+ +|-+++.+..-+ .+..+. +| |..+.+|+. .|.|
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-----~g---V~~v~gdmf-q~~P 235 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-----PG---VEHVAGDMF-QDTP 235 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-----CC---cceeccccc-ccCC
Confidence 34444456 7899999999999999888543 477777777666 333332 23 566666765 4566
Q ss_pred cCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
- .+ +.|-.+-+.....-. ++|+++++.|+|||.|+..-+-+.
T Consensus 236 ~------~d--aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 236 K------GD--AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred C------cC--eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 3 11 222222222222223 799999999999999999888444
No 252
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.57 E-value=0.7 Score=42.80 Aligned_cols=121 Identities=13% Similarity=0.105 Sum_probs=54.7
Q ss_pred EEechhcHHHHHhh--CCCCCCeEeeecccCcchHHHHHHhc----CCCcEEEEcCCchhhHHhhccccccccCcceEEE
Q psy7769 149 YCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTL----YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKL 222 (355)
Q Consensus 149 ~~QD~aS~l~~~~L--~~~pG~~VLD~CAgPGgKT~~la~~~----~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~ 222 (355)
.+|.+-=+++-..| .++| +.|+.+|.+-||-+...|.++ ..++|+++|++....-+..++ .. +-.++|++
T Consensus 14 i~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e--~h-p~~~rI~~ 89 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE--SH-PMSPRITF 89 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG--G-----TTEEE
T ss_pred hhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh--hc-cccCceEE
Confidence 34544444443333 3455 499999999999998877543 569999999976554112222 00 11256889
Q ss_pred EEeccee---eecccCCCCCccCCcc-ccchHHHHhhhhHH-HHHHHHHhhccCCcEEEE
Q psy7769 223 VKVGGSV---VYSTCSLSPIQNDGVV-HMSLKRIWEETGCE-IEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 223 ~~~Da~~---lDaPCSgsG~t~~~~l-~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVY 277 (355)
+.+|... ++....-.. ...+.+ ..+.. +...-. ..|+.-..++.+|+++|.
T Consensus 90 i~Gds~d~~~~~~v~~~~~-~~~~vlVilDs~---H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELAS-PPHPVLVILDSS---HTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp EES-SSSTHHHHTSGSS-----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEE
T ss_pred EECCCCCHHHHHHHHHhhc-cCCceEEEECCC---ccHHHHHHHHHHhCccCCCCCEEEE
Confidence 9988754 222221110 001111 11110 000111 457778899999999874
No 253
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=89.53 E-value=0.57 Score=37.63 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=31.4
Q ss_pred eeecccCcchHHHHHHhcCC---CcEEEEcCCchhh-HHhhccccccccCc-ceEEEEEeccee--------------ee
Q psy7769 171 LDMCAAPGGKTLVALQTLYP---DYYCMDGASLLPV-LALNIRPYDTVLDI-HALKLVKVGGSV--------------VY 231 (355)
Q Consensus 171 LD~CAgPGgKT~~la~~~~~---g~V~AvD~s~~Rl-l~~~l~r~~~~~g~-~~v~~~~~Da~~--------------lD 231 (355)
|+++++.|..|..+++.+.. ++++++|..+..- .++.+++ .+. .+++++.+|... +|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK----AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS----------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh----cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC
Confidence 56888999999998876533 4899999999511 3333331 122 357888777643 22
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+.= +.+. ...-++.+++.|+|||.||+=
T Consensus 77 g~H-------------~~~~------~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 77 GDH-------------SYEA------VLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp S----------------HHH------HHHHHHHHGGGEEEEEEEEEE
T ss_pred CCC-------------CHHH------HHHHHHHHHHHcCCCeEEEEe
Confidence 221 0000 115689999999999999874
No 254
>KOG3987|consensus
Probab=89.08 E-value=0.16 Score=47.27 Aligned_cols=35 Identities=26% Similarity=0.117 Sum_probs=30.5
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++||++||-|-.|.+++... .+|+|-+.|..|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr 147 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMR 147 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHH
Confidence 3589999999999999998776 5799999998876
No 255
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.07 E-value=2.2 Score=41.49 Aligned_cols=88 Identities=10% Similarity=-0.060 Sum_probs=50.2
Q ss_pred hCCCCCCeEeeecccCcch-HHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEE-EEEe--cceeeecccCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALK-LVKV--GGSVVYSTCSL 236 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgK-T~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~-~~~~--Da~~lDaPCSg 236 (355)
.++++|++||=.++|+-|. +.++|+..+ .+|++++.++.++ +.+.+ |...+. .... ++..++.-|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~-------Ga~~vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL-------GAASAGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh-------CCceeccccccCcccceEEEECCC
Confidence 4678999999887543322 233444442 5799999999888 33322 221110 0000 11112223333
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.| ..+..+++.+++||+++..
T Consensus 233 ~~---------------------~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---------------------GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---------------------HHHHHHHHhhCCCcEEEEE
Confidence 33 4588899999999999764
No 256
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=88.87 E-value=2 Score=39.98 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=58.0
Q ss_pred EEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 149 YCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 149 ~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|..++--.++-.+....++..|-|+|||-+..+ +...+ -.|..+|..+..- ..-++...- +....+.
T Consensus 55 WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~n~~Vtacdia~vP--L~~~svD---- 124 (219)
T PF05148_consen 55 WPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAPNPRVTACDIANVP--LEDESVD---- 124 (219)
T ss_dssp SSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-SSTTEEES-TTS-S----TT-EE----
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCCCCCEEEecCccCc--CCCCcee----
Confidence 444555555555555555679999999988655 33322 4688888765321 111111000 0001111
Q ss_pred cceeeeccc-CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe-CCCCCCCCHHHHHHHHHhhhhccC
Q psy7769 226 GGSVVYSTC-SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST-CSLSPIQNDGVVHMSLKRIWEETG 303 (355)
Q Consensus 226 Da~~lDaPC-SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT-CSl~~~ENE~vV~~~L~~~~~~~~ 303 (355)
+=+=| |-.| ++....|.+|.|.|||||.|..+- +|= .+|. +.|++.. ...|
T Consensus 125 ----v~VfcLSLMG-----------------Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--f~~~---~~F~~~~-~~~G 177 (219)
T PF05148_consen 125 ----VAVFCLSLMG-----------------TNWPDFIREANRVLKPGGILKIAEVKSR--FENV---KQFIKAL-KKLG 177 (219)
T ss_dssp ----EEEEES---S-----------------S-HHHHHHHHHHHEEEEEEEEEEEEGGG---S-H---HHHHHHH-HCTT
T ss_pred ----EEEEEhhhhC-----------------CCcHHHHHHHHheeccCcEEEEEEeccc--CcCH---HHHHHHH-HHCC
Confidence 11223 1123 122367999999999999998774 333 3343 4444433 2467
Q ss_pred ceEEEecc
Q psy7769 304 CEIEIKDL 311 (355)
Q Consensus 304 ~~~~~~~l 311 (355)
+++.-.+.
T Consensus 178 F~~~~~d~ 185 (219)
T PF05148_consen 178 FKLKSKDE 185 (219)
T ss_dssp EEEEEEE-
T ss_pred CeEEeccc
Confidence 66655443
No 257
>KOG3191|consensus
Probab=88.81 E-value=0.65 Score=42.39 Aligned_cols=119 Identities=8% Similarity=0.003 Sum_probs=69.2
Q ss_pred CCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-----------eeeec
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-----------SVVYS 232 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-----------~~lDa 232 (355)
-..+|+++||+|..++.+++.. ++...+|.|+++..+ -.+.++ . +..++.+++.|- ..+.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~--~---n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR--C---NRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH--h---cCCccceeehhHHhhhccCCccEEEECC
Confidence 4689999999999999999865 447789999999999 334333 1 111233443332 22333
Q ss_pred ccCCCCCccCCcc-------ccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 233 TCSLSPIQNDGVV-------HMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 233 PCSgsG~t~~~~l-------~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
|--- +.+..+ .|.-. ..-+.-.+++|...-.+|.|-|.+...+|.-+ +..-|-++++.
T Consensus 119 PYVp---t~~~~i~~~~i~~a~aGG-~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---~p~ei~k~l~~ 183 (209)
T KOG3191|consen 119 PYVP---TSDEEIGDEGIASAWAGG-KDGREVTDRLLPQVPDILSPRGVFYLVALRAN---KPKEILKILEK 183 (209)
T ss_pred CcCc---CCcccchhHHHHHHHhcC-cchHHHHHHHHhhhhhhcCcCceEEeeehhhc---CHHHHHHHHhh
Confidence 3300 000001 12210 00111233788888889999999988888653 33334446654
No 258
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=88.30 E-value=0.59 Score=42.00 Aligned_cols=38 Identities=32% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
-.+|+.|||-+||+|. |+++|..++ -+-+++|+++.-+
T Consensus 189 t~~gdiVlDpF~GSGT-T~~aa~~l~-R~~ig~E~~~~y~ 226 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGT-TAVAAEELG-RRYIGIEIDEEYC 226 (231)
T ss_dssp S-TT-EEEETT-TTTH-HHHHHHHTT--EEEEEESSHHHH
T ss_pred hccceeeehhhhccCh-HHHHHHHcC-CeEEEEeCCHHHH
Confidence 4689999999999997 444444443 4699999998766
No 259
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=88.01 E-value=1.4 Score=42.73 Aligned_cols=36 Identities=14% Similarity=-0.047 Sum_probs=27.3
Q ss_pred CeEeeecccCcchHHHHHHh----cC----CCcEEEEcCCchhh
Q psy7769 168 DTVLDMCAAPGGKTLVALQT----LY----PDYYCMDGASLLPV 203 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~----~~----~g~V~AvD~s~~Rl 203 (355)
-+||.++|++|-=.--||.+ .. .-+|+|.|+|...+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL 160 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL 160 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH
Confidence 59999999999765444432 21 24699999999998
No 260
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.59 E-value=2.6 Score=41.90 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=33.1
Q ss_pred hhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+.+++|++||..++|+ |..+.++|+..+...|+++|.++.++
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~ 222 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL 222 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 45678899999997766 55666777766434699999999888
No 261
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.07 E-value=0.62 Score=44.83 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=41.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
+.||+.-.|++|+|||.|-++.... -.|+|+|.-+-+ .++ ++.+.|+-...||...-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~--m~V~aVDng~ma---~sL------~dtg~v~h~r~DGfk~~ 265 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRN--MRVYAVDNGPMA---QSL------MDTGQVTHLREDGFKFR 265 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcc--eEEEEeccchhh---hhh------hcccceeeeeccCcccc
Confidence 4689999999999999999988764 589999976632 222 23345666777776533
No 262
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.79 E-value=3.5 Score=41.08 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=33.5
Q ss_pred hCCCCCCeEeeeccc-CcchHHHHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 162 LNIRPYDTVLDMCAA-PGGKTLVALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 162 L~~~pG~~VLD~CAg-PGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
.+++||++|+=.++| -|..++++|..+. .+|+|+|++++.+ +.+.+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh
Confidence 457899999988887 2334455666454 8999999999988 44444
No 263
>PRK13699 putative methylase; Provisional
Probab=85.28 E-value=1.1 Score=41.80 Aligned_cols=44 Identities=23% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
-.+|+.|||-++|+|....+..++. -+.+++|+++.-. +.++++
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence 4689999999999997444433332 5789999999877 555554
No 264
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=85.01 E-value=1.5 Score=40.19 Aligned_cols=107 Identities=7% Similarity=-0.051 Sum_probs=51.9
Q ss_pred CCeEeeecccCcchHHHHHHh----cC-----CCcEEEEcCCchhh--HHhhc------ccc------ccc---cC----
Q psy7769 167 YDTVLDMCAAPGGKTLVALQT----LY-----PDYYCMDGASLLPV--LALNI------RPY------DTV---LD---- 216 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~----~~-----~g~V~AvD~s~~Rl--l~~~l------~r~------~~~---~g---- 216 (355)
--+||.++|++|-=+--||.+ .. .-+|+|.|+|...+ +++-. +.+ +|. .+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 358999999999765444422 11 14899999999998 43211 100 110 00
Q ss_pred c-----ceEEEEEecceeeecccCCCCCccCCc-cc-cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 217 I-----HALKLVKVGGSVVYSTCSLSPIQNDGV-VH-MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 217 ~-----~~v~~~~~Da~~lDaPCSgsG~t~~~~-l~-~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
+ .+|.|...|-...+++-..+-+...|+ +. ++++ .| ++++...+.|+|||.|+-...
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~-------~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPE-------TQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HH-------HHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHH-------HHHHHHHHHHHHcCCCCEEEEecC
Confidence 0 224455544432112211111111222 11 3332 33 899999999999999998644
No 265
>KOG2782|consensus
Probab=84.34 E-value=0.92 Score=42.57 Aligned_cols=46 Identities=17% Similarity=0.008 Sum_probs=41.4
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
++..|.|.+|...+||.-|.||.|..|.+.....+++|.|.++-.-
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~ 80 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVAR 80 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHH
Confidence 4677889999999999999999999999988778999999998665
No 266
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=83.75 E-value=0.96 Score=46.99 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=51.8
Q ss_pred eEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh---HHhhccccccccCc-ceEEEEEecceeeec-ccCCCCCccC
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV---LALNIRPYDTVLDI-HALKLVKVGGSVVYS-TCSLSPIQND 242 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl---l~~~l~r~~~~~g~-~~v~~~~~Da~~lDa-PCSgsG~t~~ 242 (355)
.+||++||.|+++..|....=. -.+...|.++... +++-+- .+ .+. ..-++--.|.. +|. =||.-.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp--a~-~~~~~s~rLPfp~~~-fDmvHcsrc~---- 191 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP--AM-IGVLGSQRLPFPSNA-FDMVHCSRCL---- 191 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc--hh-hhhhccccccCCccc-hhhhhccccc----
Confidence 6899999999999998875310 1122234444333 222221 00 000 00011111111 222 243322
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+.|.+..- -+|-+.-|+|+|||.+|+|.--++
T Consensus 192 --i~W~~~~g-------~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 192 --IPWHPNDG-------FLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --ccchhccc-------ceeehhhhhhccCceEEecCCccc
Confidence 33554431 357788899999999999988777
No 267
>KOG1197|consensus
Probab=83.12 E-value=4.6 Score=38.96 Aligned_cols=46 Identities=28% Similarity=0.179 Sum_probs=31.9
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcC--CCcEEEEcCCchhh--HHhhcc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLY--PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~--~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+++||+.||= .||.||..+.+.|+++ ..++++.-.+.+.. +++|-.
T Consensus 143 ~vkpGhtVlv-haAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~ 192 (336)
T KOG1197|consen 143 NVKPGHTVLV-HAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGA 192 (336)
T ss_pred CCCCCCEEEE-EeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCC
Confidence 6899999985 5667888887777653 36677776666655 555544
No 268
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=83.06 E-value=1.3 Score=42.58 Aligned_cols=42 Identities=24% Similarity=0.189 Sum_probs=30.5
Q ss_pred CeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh-HHhhcc
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV-LALNIR 209 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl-l~~~l~ 209 (355)
.+|||++||||.-+..+.+..+ ...++++|.|+.++ +.+.+.
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 4899999999965444444443 36799999999999 544443
No 269
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=82.88 E-value=3.7 Score=39.72 Aligned_cols=98 Identities=16% Similarity=0.043 Sum_probs=53.0
Q ss_pred CeEeeecccCcchHHHHHH-h-cCCCcEEEEcCCchhh-HHhh-ccccccccCc-ceEEEEEecceeeecccCCCCCccC
Q psy7769 168 DTVLDMCAAPGGKTLVALQ-T-LYPDYYCMDGASLLPV-LALN-IRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~-~-~~~g~V~AvD~s~~Rl-l~~~-l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.+|+=+|+||=-.|+.+.. . +....|+++|+++.+. +.+. ++. . .+. ..+.+..+|+..+ +.. . ..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~-~--~~L~~~m~f~~~d~~~~--~~d-l---~~ 192 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVAS-D--LGLSKRMSFITADVLDV--TYD-L---KE 192 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH------HH-SSEEEEES-GGGG---GG-------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh-c--ccccCCeEEEecchhcc--ccc-c---cc
Confidence 3999999999988876543 3 3346799999999999 4443 331 1 232 4578888887432 210 0 00
Q ss_pred CccccchHHHHhhh-----hHHHHHHHHHhhccCCcEEEEE
Q psy7769 243 GVVHMSLKRIWEET-----GCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 243 ~~l~~~~~~l~~l~-----~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
-++.| +..+. ..+++|.+..+.++||..|+|=
T Consensus 193 ~DvV~----lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 193 YDVVF----LAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -SEEE----E-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CCEEE----EhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 00001 11111 2338999999999999999984
No 270
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.22 E-value=5.6 Score=38.91 Aligned_cols=40 Identities=10% Similarity=-0.075 Sum_probs=27.6
Q ss_pred hCCCCCCeEeeecccCcchHHH---HHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLV---ALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~---la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||=.++ |+.... +|+..+-.+|+++|.++.|+
T Consensus 172 ~~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~ 214 (358)
T TIGR03451 172 GGVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKL 214 (358)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 35789999998754 555544 44444322599999999998
No 271
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.64 E-value=0.65 Score=38.29 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=47.6
Q ss_pred CcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecce-------------eeec--ccCCCCCc
Q psy7769 177 PGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGS-------------VVYS--TCSLSPIQ 240 (355)
Q Consensus 177 PGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~-------------~lDa--PCSgsG~t 240 (355)
-|..++++|...+ .+|+++|.++.++ +.+.+- .. .++..+.. .+|. -|+|.+
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~G-------a~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~-- 69 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKELG-------AD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSG-- 69 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT-------ES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSSH--
T ss_pred hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhc-------cc--ccccccccccccccccccccccceEEEEecCcH--
Confidence 4677888888776 8999999999998 333322 11 11111110 1222 243333
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+..+++++++||+++.....-
T Consensus 70 -------------------~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 -------------------DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -------------------HHHHHHHHHEEEEEEEEEESSTS
T ss_pred -------------------HHHHHHHHHhccCCEEEEEEccC
Confidence 56899999999999999865554
No 272
>PRK00536 speE spermidine synthase; Provisional
Probab=80.52 E-value=16 Score=35.05 Aligned_cols=115 Identities=9% Similarity=-0.080 Sum_probs=71.3
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE---------
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK--------- 224 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~--------- 224 (355)
.-+++...+.| .+||=+|.|-||..-.+++.- .+|+.||+++.-+ .++.+-.+.-....++++++.
T Consensus 63 vHppl~~h~~p-k~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~ 139 (262)
T PRK00536 63 AHMGGCTKKEL-KEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKK 139 (262)
T ss_pred HHHHHhhCCCC-CeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCc
Confidence 34556666666 599999999999888887753 4999999999888 444343110001224454432
Q ss_pred ecceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 225 VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 225 ~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.|...+|..- ++ +-.+.+.+.|+|||.+|.=+-|... ...++..+.+..
T Consensus 140 fDVIIvDs~~-------------~~----------~fy~~~~~~L~~~Gi~v~Qs~sp~~--~~~~~~~i~~~l 188 (262)
T PRK00536 140 YDLIICLQEP-------------DI----------HKIDGLKRMLKEDGVFISVAKHPLL--EHVSMQNALKNM 188 (262)
T ss_pred CCEEEEcCCC-------------Ch----------HHHHHHHHhcCCCcEEEECCCCccc--CHHHHHHHHHHH
Confidence 2223344211 11 3467788899999999986555543 345556665544
No 273
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.32 E-value=5.1 Score=39.10 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=28.2
Q ss_pred CCCCCCeEeeecccCcchH-HHHHHh-cCCCcEEEEcCCchhh
Q psy7769 163 NIRPYDTVLDMCAAPGGKT-LVALQT-LYPDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT-~~la~~-~~~g~V~AvD~s~~Rl 203 (355)
.+++|++||=.+||+=|.. .++|.. .+..+|+++|.++.|+
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~ 202 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL 202 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH
Confidence 3678999998876443322 344443 3335799999999988
No 274
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=80.26 E-value=1.6 Score=41.58 Aligned_cols=130 Identities=18% Similarity=0.101 Sum_probs=67.5
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEE---EE-EecceeeecccCCCCCccC
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALK---LV-KVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~---~~-~~Da~~lDaPCSgsG~t~~ 242 (355)
+|+|+|||.||.+..+-+.+ --.|.|+|+++... .+.|... .....+..+. +- ..|....-+||.++...+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~~-~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFPE-VICGDITEIDPSDLPKDVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHTE-EEESHGGGCHHHHHHHT-SEEEEE---TTTSTTST
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcccc-cccccccccccccccccceEEEeccCCceEecccc
Confidence 79999999999998887764 23689999999988 6666630 1001111110 11 2454557789988764332
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceE
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEI 306 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~ 306 (355)
+. .....+ ..+-.-+-.+++.++|--.|+=..-.+....+..+++.+++.. ++.|-.+
T Consensus 80 ~~-~~~d~r----~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l-~~lGY~v 137 (335)
T PF00145_consen 80 RK-GFDDPR----NSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEEL-EELGYNV 137 (335)
T ss_dssp HH-CCCCHT----TSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHH-HHTTEEE
T ss_pred cc-cccccc----chhhHHHHHHHhhccceEEEecccceeeccccccccccccccc-cccceee
Confidence 11 011110 1111112233345678655555566666666667777777655 2344333
No 275
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.67 E-value=13 Score=36.11 Aligned_cols=39 Identities=15% Similarity=-0.036 Sum_probs=27.1
Q ss_pred CCCCCCeEeeecccCcchHHH---HHHhcCCCcEEEEcCCchhh
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLV---ALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~---la~~~~~g~V~AvD~s~~Rl 203 (355)
...+|++||=.+| |+.... +|...+..+|+++|.+++|+
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~ 207 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSL 207 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHH
Confidence 4568999997754 555544 44444334699999999998
No 276
>KOG1269|consensus
Probab=77.62 E-value=3.9 Score=41.07 Aligned_cols=48 Identities=15% Similarity=-0.012 Sum_probs=38.6
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
....+.....+||..++|+.||-|+-+..++... ...++++|.++-.+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~ 146 (364)
T KOG1269|consen 99 EGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEA 146 (364)
T ss_pred cchHHHhhcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHH
Confidence 3345556678899999999999999998887653 36889999998887
No 277
>PHA01634 hypothetical protein
Probab=77.54 E-value=3.5 Score=35.69 Aligned_cols=43 Identities=12% Similarity=-0.127 Sum_probs=35.5
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.|.+|+|++|+-|..++..+-.+ ..+|+|++.++... +++|++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhh
Confidence 47799999999999888776554 36899999999877 777776
No 278
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=76.94 E-value=12 Score=36.74 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=27.5
Q ss_pred hCCCCCCeEeeecccCcchHHHH---HHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVA---LQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~l---a~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||=.++ |+....+ |...+-..|+++|.++.|+
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~ 229 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKL 229 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHH
Confidence 35789999988754 5555443 3433223699999999998
No 279
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.66 E-value=8.7 Score=36.20 Aligned_cols=40 Identities=18% Similarity=-0.127 Sum_probs=27.0
Q ss_pred hCCCCCCeEeeecccCcchHHHHH---HhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVAL---QTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la---~~~~~g~V~AvD~s~~Rl 203 (355)
+.+.+|++||=.++ |+....++ +..+-.+|+++|.++.|+
T Consensus 116 ~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~ 158 (280)
T TIGR03366 116 AGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRR 158 (280)
T ss_pred ccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 45678999998854 55554443 333323499999999988
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.27 E-value=15 Score=38.72 Aligned_cols=39 Identities=18% Similarity=-0.055 Sum_probs=31.3
Q ss_pred CCCCCeEeeecccCcchHH-HHHHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~-~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+|++|+=++||+=|... ..|..++ ..|+++|+++.|+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rl 201 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVA 201 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH
Confidence 4689999999999977654 4555554 5899999999998
No 281
>KOG1227|consensus
Probab=76.09 E-value=1.2 Score=43.65 Aligned_cols=44 Identities=23% Similarity=0.053 Sum_probs=36.7
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.|+.|.||-||-|..|+...-..+...|+|+|.++..+ |+++++
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHH
Confidence 47999999999999999444333346899999999999 888887
No 282
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=75.93 E-value=19 Score=33.86 Aligned_cols=110 Identities=7% Similarity=-0.041 Sum_probs=78.9
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------eeccc-
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTC- 234 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPC- 234 (355)
+.|.++.|+||==|..+..+.+......++|.|+++.-+ +.+++++.. ..+.+++..+||.. +|.--
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCccCCcCEEEE
Confidence 456779999999999999888876668899999999999 888887321 22567888888854 22211
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.|.|. . + +-+||+...+.++.--++| +.|.-|+.-++.+|..+
T Consensus 92 AGMGG----------~-l-----I~~ILee~~~~l~~~~rlI-----LQPn~~~~~LR~~L~~~ 134 (226)
T COG2384 92 AGMGG----------T-L-----IREILEEGKEKLKGVERLI-----LQPNIHTYELREWLSAN 134 (226)
T ss_pred eCCcH----------H-H-----HHHHHHHhhhhhcCcceEE-----ECCCCCHHHHHHHHHhC
Confidence 13331 0 0 1178999888887433555 46779999999999864
No 283
>KOG1709|consensus
Probab=75.69 E-value=25 Score=33.19 Aligned_cols=97 Identities=14% Similarity=0.002 Sum_probs=55.8
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe---cceeeecccCCCCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV---GGSVVYSTCSLSPI 239 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~---Da~~lDaPCSgsG~ 239 (355)
..|.+||.++=|-|-..+.+-+. ++.+-+-++.++.-+ ++...- ..-.||.++.+ |... +.|--++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw-----~ek~nViil~g~WeDvl~-~L~d~~F-- 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGW-----REKENVIILEGRWEDVLN-TLPDKHF-- 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCcceEEEecCHHHHHHHHhccc-----ccccceEEEecchHhhhc-cccccCc--
Confidence 67889999999999888777554 345666677777766 444433 12255655432 2110 0110000
Q ss_pred ccCCccc---cch--HHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 240 QNDGVVH---MSL--KRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 240 t~~~~l~---~~~--~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
++ |- +++ +++. ..-.++.++|||+|.+-|..
T Consensus 171 --DG-I~yDTy~e~yEdl~------~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 171 --DG-IYYDTYSELYEDLR------HFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred --ce-eEeechhhHHHHHH------HHHHHHhhhcCCCceEEEec
Confidence 00 11 111 2222 45669999999999888864
No 284
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.57 E-value=3.5 Score=40.34 Aligned_cols=69 Identities=16% Similarity=0.033 Sum_probs=43.5
Q ss_pred EeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEE---EEEecceeeecccCCCCC
Q psy7769 170 VLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALK---LVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 170 VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~---~~~~Da~~lDaPCSgsG~ 239 (355)
|+|++||.||.+.-+-+.+ --.|.|+|+++... .+.|.........+..+. +-..|...--+||.++-.
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ 74 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSI 74 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccch
Confidence 6899999999998876654 23578899999988 666664100001111111 112355557789977753
No 285
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=75.44 E-value=18 Score=34.36 Aligned_cols=106 Identities=10% Similarity=0.014 Sum_probs=55.3
Q ss_pred CCCeEeeecccCcchHHHHHHh-cCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQT-LYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~-~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------- 229 (355)
.|.+|| |-|-+-.+...+.+ ..+.+|+.+|+++..+ +.+..+ + .|.+ |+....|.+.
T Consensus 44 ~gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~--~--~gl~-i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 44 EGKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAE--E--EGLP-IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHH--H--HT---EEEE---TTS---TTTSS-BSEE
T ss_pred cCCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHH--H--cCCc-eEEEEecccccCCHHHhcCCCEE
Confidence 577887 55677666554443 4458999999999888 777666 3 3444 7777777654
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCC-CH-HHHHHHHHh
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQ-ND-GVVHMSLKR 297 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~E-NE-~vV~~~L~~ 297 (355)
-|||-+ ++.+. -.|.++...||.-|..+|-..|-.+.- .+ ..||++|.+
T Consensus 117 ~TDPPyT-------------~~G~~------LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~ 168 (243)
T PF01861_consen 117 FTDPPYT-------------PEGLK------LFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLE 168 (243)
T ss_dssp EE---SS-------------HHHHH------HHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHT
T ss_pred EeCCCCC-------------HHHHH------HHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHH
Confidence 666652 22222 358889999998886667666654321 12 256777653
No 286
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=74.93 E-value=11 Score=39.41 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecc
Q psy7769 257 GCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDL 311 (355)
Q Consensus 257 ~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l 311 (355)
.+..+|-+.-|.|+|||.++.- .+.+++.++-+ ......|+....+.
T Consensus 445 ~~~~illEmDRILRP~G~~iiR-------D~~~vl~~v~~-i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 445 EMEDILLEMDRILRPGGWVIIR-------DTVDVLEKVKK-IAKSLRWEVRIHDT 491 (506)
T ss_pred cHHHHHHHhHhhcCCCceEEEe-------ccHHHHHHHHH-HHHhCcceEEEEec
Confidence 3448899999999999999873 55566665543 22346677766665
No 287
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=73.68 E-value=16 Score=35.55 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=29.1
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||=.+||+ |.-+.++|...+ .+|+++|.++.|+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~~~~~~ 203 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDIDPEKL 203 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHH
Confidence 4578899999888744 333344555443 5799999999988
No 288
>KOG3673|consensus
Probab=73.44 E-value=7.6 Score=40.94 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=19.2
Q ss_pred hHHHHhhhhHH---HHHHHHHhhccCCcEEE
Q psy7769 249 LKRIWEETGCE---IEIKHALKLVKVGGSVV 276 (355)
Q Consensus 249 ~~~l~~l~~lQ---~lL~~A~~~LkpGG~lV 276 (355)
++.+.+....| =-+-.|+..+++||.++
T Consensus 367 QeNiQEILSKqLyLCQfL~aL~IvR~gG~F~ 397 (845)
T KOG3673|consen 367 QENIQEILSKQLYLCQFLVALCIVREGGNFF 397 (845)
T ss_pred hhhHHHHHHHHHHHHHHHHHheeeecCCeEE
Confidence 45566655555 22456889999999885
No 289
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=72.34 E-value=12 Score=38.94 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=39.7
Q ss_pred EEEechhcHHHHHhhCCC--CCCeEeeecccCcchHHHHHHhcC----CCcEEEEcCCchhh
Q psy7769 148 YYCMDGASLLPVLALNIR--PYDTVLDMCAAPGGKTLVALQTLY----PDYYCMDGASLLPV 203 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~--pG~~VLD~CAgPGgKT~~la~~~~----~g~V~AvD~s~~Rl 203 (355)
+|....-+.+.+.++.+. |+..|.|+|||+|+.-........ ...+++.+......
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~ 258 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY 258 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH
Confidence 555555555566777765 778999999999998765443221 14589999998877
No 290
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=71.56 E-value=5.9 Score=40.06 Aligned_cols=48 Identities=27% Similarity=0.222 Sum_probs=36.2
Q ss_pred hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 154 aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
-...=..+|++.|+++||=+++| |.-++.++.. ++.+|+|||.|+..+
T Consensus 23 Dp~vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~~-~P~~I~aVDlNp~Q~ 70 (380)
T PF11899_consen 23 DPRVDMEALNIGPDDRVLTITSA-GCNALDYLLA-GPKRIHAVDLNPAQN 70 (380)
T ss_pred CcHHHHHHhCCCCCCeEEEEccC-CchHHHHHhc-CCceEEEEeCCHHHH
Confidence 34455678889999999999876 4445555332 468999999999887
No 291
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=66.83 E-value=29 Score=33.26 Aligned_cols=37 Identities=5% Similarity=-0.287 Sum_probs=23.7
Q ss_pred CCCCeEeeecccCcchHHH---HHHhcCCCcEEEEcCCchhh
Q psy7769 165 RPYDTVLDMCAAPGGKTLV---ALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~---la~~~~~g~V~AvD~s~~Rl 203 (355)
.+|++||=+++ |+.... +|...+-..|+++|.++.|+
T Consensus 143 ~~~~~vlV~G~--G~vG~~a~q~ak~~G~~~v~~~~~~~~rl 182 (308)
T TIGR01202 143 VKVLPDLIVGH--GTLGRLLARLTKAAGGSPPAVWETNPRRR 182 (308)
T ss_pred cCCCcEEEECC--CHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 46888887644 555544 44444323477889998887
No 292
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=66.49 E-value=7.9 Score=38.05 Aligned_cols=74 Identities=23% Similarity=0.186 Sum_probs=46.6
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccccc-Ccc-----eEEEEEecceeeecccCCCCC
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVL-DIH-----ALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~-g~~-----~v~~~~~Da~~lDaPCSgsG~ 239 (355)
.+++|+|||.||...-+.+.+ --.+.|+|+++..+ .+.|...-.... .+. .+.....|...--+||-++-+
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~ 82 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSI 82 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhh
Confidence 479999999999997776654 24689999999999 666665100000 000 111114566667789977754
Q ss_pred ccC
Q psy7769 240 QND 242 (355)
Q Consensus 240 t~~ 242 (355)
.+.
T Consensus 83 aG~ 85 (328)
T COG0270 83 AGK 85 (328)
T ss_pred cCc
Confidence 433
No 293
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=64.56 E-value=27 Score=33.98 Aligned_cols=37 Identities=14% Similarity=-0.138 Sum_probs=24.9
Q ss_pred CCCCCeEeeecccCcchHH---HHHHhcCCCcEEEEcC---Cchhh
Q psy7769 164 IRPYDTVLDMCAAPGGKTL---VALQTLYPDYYCMDGA---SLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~---~la~~~~~g~V~AvD~---s~~Rl 203 (355)
+++|++||=.++ |+.+. ++|+..+ .+|++++. ++.++
T Consensus 170 ~~~g~~vlI~G~--G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~ 212 (355)
T cd08230 170 TWNPRRALVLGA--GPIGLLAALLLRLRG-FEVYVLNRRDPPDPKA 212 (355)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHcC-CeEEEEecCCCCHHHH
Confidence 568999998765 55444 4444443 47999987 56676
No 294
>PRK07576 short chain dehydrogenase; Provisional
Probab=63.99 E-value=74 Score=29.45 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=25.8
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
++.+||=.+ |.|+.+.+++..+ ...+|++++.++..+
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~ 46 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKV 46 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 455676655 5777888877643 235799999887776
No 295
>PRK08339 short chain dehydrogenase; Provisional
Probab=63.69 E-value=79 Score=29.33 Aligned_cols=57 Identities=7% Similarity=-0.069 Sum_probs=33.9
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
|..+| +..|.||.+..+++.+ ...+|+.++.+...+ +.+.+. . ....++.++..|..
T Consensus 8 ~k~~l-ItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~~~~Dv~ 68 (263)
T PRK08339 8 GKLAF-TTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIK--S--ESNVDVSYIVADLT 68 (263)
T ss_pred CCEEE-EeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--h--hcCCceEEEEecCC
Confidence 44455 4556677888888654 236899999988777 544443 1 11123555555643
No 296
>PRK08324 short chain dehydrogenase; Validated
Probab=63.65 E-value=55 Score=35.42 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=57.9
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------ 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------ 229 (355)
+|..|| +..|.|+.+.+++..+ ...+|+++|.+..++ +...+. . . .++.++..|...
T Consensus 421 ~gk~vL-VTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~--~---~-~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVAL-VTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELG--G---P-DRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEE-EecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHh--c---c-CcEEEEEecCCCHHHHHHHHHHHH
Confidence 466677 4455788888887653 236899999998887 444333 1 1 234555555432
Q ss_pred -----eecccCCCCCccCCccc-cchHHHHhh--hhHH---HHHHHHHhhccC---CcEEEEEeC
Q psy7769 230 -----VYSTCSLSPIQNDGVVH-MSLKRIWEE--TGCE---IEIKHALKLVKV---GGSVVYSTC 280 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l~-~~~~~l~~l--~~lQ---~lL~~A~~~Lkp---GG~lVYsTC 280 (355)
+|.-....|+.....+. .+.+..... .+.. .+++.++++++. ||++|+.+-
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 34443333422222211 122222111 1111 677777887776 688887643
No 297
>PLN02740 Alcohol dehydrogenase-like
Probab=63.65 E-value=47 Score=32.83 Aligned_cols=40 Identities=10% Similarity=-0.074 Sum_probs=28.3
Q ss_pred hCCCCCCeEeeecccCcchHHHHHH---hcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQ---TLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~---~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||=.++ |+....+++ ..+..+|+++|.++.|+
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~ 236 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKF 236 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHH
Confidence 45789999998854 666554443 33323699999999998
No 298
>KOG3045|consensus
Probab=63.61 E-value=5.3 Score=38.56 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEeccc
Q psy7769 257 GCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLS 312 (355)
Q Consensus 257 ~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~ 312 (355)
+++..+.+|.+.||+||.+...--+- ..+.-...-..|. ..|+++.-.++.
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~S-Rf~dv~~f~r~l~----~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKS-RFSDVKGFVRALT----KLGFDVKHKDVS 292 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhh-hcccHHHHHHHHH----HcCCeeeehhhh
Confidence 44578999999999999887765443 2232222333333 367776666654
No 299
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=63.20 E-value=43 Score=32.30 Aligned_cols=40 Identities=13% Similarity=-0.077 Sum_probs=26.8
Q ss_pred hCCCCCCeEeeecccCcchHHH---HHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLV---ALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~---la~~~~~g~V~AvD~s~~Rl 203 (355)
...++|++||=.++ |+.... +|...+-..|++++.++.++
T Consensus 156 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~v~~~~~~~~~~ 198 (347)
T PRK10309 156 AQGCEGKNVIIIGA--GTIGLLAIQCAVALGAKSVTAIDINSEKL 198 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHH
Confidence 35678999988854 555443 44444323489999999888
No 300
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=63.08 E-value=42 Score=32.37 Aligned_cols=115 Identities=9% Similarity=-0.058 Sum_probs=58.9
Q ss_pred CeEeeecccCc--chHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----eecccCCCC
Q psy7769 168 DTVLDMCAAPG--GKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----VYSTCSLSP 238 (355)
Q Consensus 168 ~~VLD~CAgPG--gKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----lDaPCSgsG 238 (355)
...||++||-= +-+=++|+.. ...+|+-+|.++--+ .+..+. . .......++.+|.+. ++-|-...-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--~--~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--D--NPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--T---TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--C--CCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 47999999832 3344677765 459999999999777 455554 2 111237888999875 332211000
Q ss_pred CccCCc--------cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHH
Q psy7769 239 IQNDGV--------VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 239 ~t~~~~--------l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~ 292 (355)
+-.++. ++|-++. ..-..++..-...|.||..|+.|..|- +.+...++
T Consensus 146 lD~~rPVavll~~vLh~v~D~----~dp~~iv~~l~d~lapGS~L~ish~t~--d~~p~~~~ 201 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDD----DDPAGIVARLRDALAPGSYLAISHATD--DGAPERAE 201 (267)
T ss_dssp --TTS--EEEECT-GGGS-CG----CTHHHHHHHHHCCS-TT-EEEEEEEB---TTSHHHHH
T ss_pred CCCCCCeeeeeeeeeccCCCc----cCHHHHHHHHHHhCCCCceEEEEecCC--CCCHHHHH
Confidence 011111 1232221 011178999999999999999997765 33444443
No 301
>PRK12939 short chain dehydrogenase; Provisional
Probab=61.49 E-value=85 Score=28.21 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=34.5
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+.+|| +..|.|+.+.+++..+ ...+|++++.++..+ +...++ . .+ .++.+...|..
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~--~~-~~~~~~~~Dl~ 66 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE--A--AG-GRAHAIAADLA 66 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--h--cC-CcEEEEEccCC
Confidence 55666 5566888898888654 235788888887766 444443 1 11 24566666654
No 302
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=61.18 E-value=31 Score=32.61 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=26.7
Q ss_pred CCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 163 NIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+++|++||..++|+ |..+.++|...+ .+|++.+.++.+.
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~ 202 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKL 202 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHH
Confidence 477899999964321 334445555443 5699999998887
No 303
>PRK07063 short chain dehydrogenase; Provisional
Probab=59.78 E-value=1.1e+02 Score=27.94 Aligned_cols=58 Identities=10% Similarity=-0.059 Sum_probs=34.2
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
|.+||=.+ |.|+.+.+++..+ ...+|+.++.+..++ +...+. .. ....++.++..|..
T Consensus 7 ~k~vlVtG-as~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~--~~-~~~~~~~~~~~Dl~ 68 (260)
T PRK07063 7 GKVALVTG-AAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIA--RD-VAGARVLAVPADVT 68 (260)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hc-cCCceEEEEEccCC
Confidence 45666444 5677888887644 236799999988777 444443 10 01134556666643
No 304
>PLN02827 Alcohol dehydrogenase-like
Probab=58.74 E-value=52 Score=32.59 Aligned_cols=40 Identities=8% Similarity=-0.120 Sum_probs=27.6
Q ss_pred hCCCCCCeEeeecccCcchHHHHH---HhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVAL---QTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la---~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||=.++ |+....++ ...+-..|+++|.++.++
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~ 231 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKA 231 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHH
Confidence 45788999998753 66665444 333323589999998888
No 305
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=58.50 E-value=49 Score=33.69 Aligned_cols=99 Identities=13% Similarity=-0.018 Sum_probs=59.8
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHh---hcccc-ccccCcceEEEEEeccee----------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LAL---NIRPY-DTVLDIHALKLVKVGGSV---------- 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~---~l~r~-~~~~g~~~v~~~~~Da~~---------- 229 (355)
+.-.+||=++.|-|--.-.+.+.-.-+.|+-+|.++.++ +.+ .++.. +.-+..+++++++.|+..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 445689999988886555555432238999999999999 433 12210 100122678888877643
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEE
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYs 278 (355)
+|.|--.+- . ...+. +.-.-+.+.|+++|.+|.-
T Consensus 368 ~vIVDl~DP~tp-----s----------~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 368 VVIVDLPDPSTP-----S----------IGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEEEeCCCCCCc-----c----------hhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 666652111 1 11122 4455666779999998853
No 306
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=55.31 E-value=1.2e+02 Score=27.49 Aligned_cols=111 Identities=7% Similarity=-0.023 Sum_probs=58.0
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------ 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------ 229 (355)
.|.+||=. .|.|+.+..+++.+ ...+|+..+.++..+ +...++ . .+ .++.++..|...
T Consensus 9 ~~k~vlIt-Ga~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~--~--~~-~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVT-GSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK--G--QG-LSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEE-CCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--h--cC-ceEEEEEccCCCHHHHHHHHHHHH
Confidence 35566644 46788888887643 235799999888776 444444 1 12 234455555432
Q ss_pred -----eecccCCCCCccCCccc-cchHHHHhh--hhHH---HHHHHHHhhcc--CCcEEEEEeCCC
Q psy7769 230 -----VYSTCSLSPIQNDGVVH-MSLKRIWEE--TGCE---IEIKHALKLVK--VGGSVVYSTCSL 282 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l~-~~~~~l~~l--~~lQ---~lL~~A~~~Lk--pGG~lVYsTCSl 282 (355)
+|.-+...|......+. ...+.+... .++. .+++.+.+.++ ..|++|+.++..
T Consensus 83 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~ 148 (255)
T PRK07523 83 AEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQ 148 (255)
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccch
Confidence 45555444532211111 122222211 1111 56666666653 347899876643
No 307
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=54.55 E-value=48 Score=33.26 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=25.9
Q ss_pred hCCCCCCeEeeecccCcchHHH---HHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLV---ALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~---la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||=. |.|..... +|...+-..|++.|.++.|+
T Consensus 181 ~~~~~g~~VlV~--G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~ 223 (393)
T TIGR02819 181 AGVGPGSTVYIA--GAGPVGLAAAASAQLLGAAVVIVGDLNPARL 223 (393)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 457889998874 44555544 44444323467788888888
No 308
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.54 E-value=1.3e+02 Score=27.73 Aligned_cols=36 Identities=6% Similarity=-0.190 Sum_probs=24.8
Q ss_pred CCCeEeeecccC-cchHHHHHHhc--CCCcEEEEcCCch
Q psy7769 166 PYDTVLDMCAAP-GGKTLVALQTL--YPDYYCMDGASLL 201 (355)
Q Consensus 166 pG~~VLD~CAgP-GgKT~~la~~~--~~g~V~AvD~s~~ 201 (355)
.|..||=.+++. +|....+|..+ ...+|+.++.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~ 47 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDK 47 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChh
Confidence 366788888877 48888777653 2357888887754
No 309
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=54.04 E-value=75 Score=29.27 Aligned_cols=44 Identities=7% Similarity=-0.229 Sum_probs=28.2
Q ss_pred HhhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
....+++|++||=.++|+ |.-+.++|+..+..+|++.+.+..++
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~ 135 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARR 135 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHH
Confidence 345678999998874432 22334455544322399999998887
No 310
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=53.83 E-value=1e+02 Score=30.12 Aligned_cols=40 Identities=18% Similarity=0.027 Sum_probs=27.4
Q ss_pred hCCCCCCeEeeecccCcchHH---HHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTL---VALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~---~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||=.++ |+... ++|+..+...|+++|.++.+.
T Consensus 182 ~~~~~g~~vlI~g~--g~vG~~~~~la~~~G~~~v~~~~~~~~k~ 224 (365)
T cd08278 182 LKPRPGSSIAVFGA--GAVGLAAVMAAKIAGCTTIIAVDIVDSRL 224 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Confidence 35678999988743 44443 445544434699999999888
No 311
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=53.82 E-value=2.1e+02 Score=27.70 Aligned_cols=36 Identities=11% Similarity=-0.185 Sum_probs=32.4
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..-+||-=|||-|..+..+|.++ -.+.|||.|-.|+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Ml 91 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFML 91 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHH
Confidence 45689999999999999999885 5899999999999
No 312
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=53.70 E-value=67 Score=30.95 Aligned_cols=37 Identities=8% Similarity=-0.032 Sum_probs=27.4
Q ss_pred CCeEeeecccCcchHHHHH----HhcC-----CCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVAL----QTLY-----PDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la----~~~~-----~g~V~AvD~s~~Rl 203 (355)
--+||-++|++|-=.--|| +.+. .-+|+|.|+|...|
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L 142 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL 142 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH
Confidence 3589999999997554333 3332 35799999999988
No 313
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=53.53 E-value=11 Score=37.92 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhccCCcEEEEEe
Q psy7769 258 CEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 258 lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+|..+++.+.++.|||.||.+-
T Consensus 204 i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 204 IQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred HHHHHHHHHHhccCCCeEEEEe
Confidence 4468999999999999999864
No 314
>PRK06181 short chain dehydrogenase; Provisional
Probab=53.30 E-value=1.5e+02 Score=27.05 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=22.9
Q ss_pred eEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 169 TVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
+|| +..|+|+.+.+++..+ ...+|++++.+....
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~ 38 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRL 38 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 444 4556788888877643 236789988886655
No 315
>KOG1501|consensus
Probab=52.34 E-value=21 Score=37.05 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=32.4
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.|||+++|+|-.+..++..+ ...|+|+++-..+. +++...
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~ 110 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMH 110 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHh
Confidence 69999999999887777665 46799999999999 555554
No 316
>PRK08643 acetoin reductase; Validated
Probab=51.46 E-value=1.9e+02 Score=26.27 Aligned_cols=37 Identities=11% Similarity=-0.068 Sum_probs=25.4
Q ss_pred ecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhcc
Q psy7769 173 MCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 173 ~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+..|.|+.+.++++.+ ...+|+.++.+..++ +...+.
T Consensus 7 ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 7 VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS 47 (256)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 5567788888888654 235788998887766 444444
No 317
>PRK10458 DNA cytosine methylase; Provisional
Probab=51.13 E-value=19 Score=37.44 Aligned_cols=41 Identities=15% Similarity=-0.086 Sum_probs=32.6
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNI 208 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l 208 (355)
.-+++|++||.||.+..+-+.+. -.|.|+|+++... .+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHc
Confidence 55999999999999988765542 3579999999888 66665
No 318
>PRK06194 hypothetical protein; Provisional
Probab=50.88 E-value=1.4e+02 Score=27.69 Aligned_cols=56 Identities=11% Similarity=0.002 Sum_probs=34.6
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+.+|| +..|.|+.+.+++..+ ...+|+++|.+...+ +...+. . .+ .++.++..|..
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~-~~~~~~~~D~~ 65 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELR--A--QG-AEVLGVRTDVS 65 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH--h--cC-CeEEEEECCCC
Confidence 44666 6667788899888654 235799999887666 333333 1 11 24566666654
No 319
>KOG2651|consensus
Probab=50.80 E-value=25 Score=35.77 Aligned_cols=45 Identities=20% Similarity=0.017 Sum_probs=33.8
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCc
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASL 200 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~ 200 (355)
|-++....+-.+=+.|+|++||+|..+..|+-. .+-.|+|+|-|.
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~-y~lsV~aIegsq 186 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG-YGLSVKAIEGSQ 186 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc-cCceEEEeccch
Confidence 445555555566789999999999888777643 346899999984
No 320
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=50.77 E-value=62 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.054 Sum_probs=25.8
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
+...+|++||-.++|. |..+.++|+..+-.+|++.+.++.+.
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~ 203 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPL 203 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH
Confidence 3444899999854432 22334455554323689999887776
No 321
>PRK05872 short chain dehydrogenase; Provisional
Probab=50.24 E-value=2e+02 Score=27.10 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=25.1
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
.|.+|| +..|.||.+.++++.+ ...+|+.++.+..++
T Consensus 8 ~gk~vl-ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l 46 (296)
T PRK05872 8 AGKVVV-VTGAARGIGAELARRLHARGAKLALVDLEEAEL 46 (296)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 355666 4455677788877654 235788888888776
No 322
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=49.58 E-value=1.1e+02 Score=29.03 Aligned_cols=40 Identities=15% Similarity=-0.057 Sum_probs=27.0
Q ss_pred hCCCCCCeEeeecccCcchHH---HHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTL---VALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~---~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||=.++ .|+... ++|+.. ..+|++.+.++++.
T Consensus 134 ~~~~~g~~VLI~ga-~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~ 176 (325)
T TIGR02825 134 CGVKGGETVMVNAA-AGAVGSVVGQIAKLK-GCKVVGAAGSDEKV 176 (325)
T ss_pred hCCCCCCEEEEeCC-ccHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence 45789999986654 344444 444443 25799999888877
No 323
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=49.52 E-value=1e+02 Score=29.72 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=63.2
Q ss_pred ecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----------------eecc
Q psy7769 173 MCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----------------VYST 233 (355)
Q Consensus 173 ~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----------------lDaP 233 (355)
+---||+--++ ++++ ...++.++|..++-. +++++. +..++.+...||.. +|||
T Consensus 93 l~~YpGSP~lA-~~llR~qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPP 165 (279)
T COG2961 93 LRYYPGSPLLA-RQLLREQDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPP 165 (279)
T ss_pred cccCCCCHHHH-HHHcchhceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCC
Confidence 34456653322 2233 348999999999988 888877 44678999999854 6666
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.- . -.+...+-+-|+.+++-..-| +. |-+.|.-+-..++.|++..
T Consensus 166 fE-------------~--~~eY~rvv~~l~~~~kRf~~g-~y----aiWYPik~r~~~~~f~~~L 210 (279)
T COG2961 166 FE-------------L--KDEYQRVVEALAEAYKRFATG-TY----AIWYPIKDRRQIRRFLRAL 210 (279)
T ss_pred cc-------------c--ccHHHHHHHHHHHHHHhhcCc-eE----EEEEeecchHHHHHHHHHH
Confidence 51 0 111111115566777666544 32 4467888889999999865
No 324
>PRK07102 short chain dehydrogenase; Provisional
Probab=49.52 E-value=1.7e+02 Score=26.39 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=33.5
Q ss_pred eEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 169 TVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+|| +..|+|+.+.+++..+ . ..+|++++.++... +.+.+. . .+..++.++..|..
T Consensus 3 ~vl-ItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~--~~~~~~~~~~~Dl~ 61 (243)
T PRK07102 3 KIL-IIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLR--A--RGAVAVSTHELDIL 61 (243)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH--H--hcCCeEEEEecCCC
Confidence 455 4456788888888654 2 25799999998776 333333 1 12235666666643
No 325
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=49.19 E-value=51 Score=31.61 Aligned_cols=40 Identities=25% Similarity=0.072 Sum_probs=28.0
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHH---hcCCCc-EEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQ---TLYPDY-YCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~---~~~~g~-V~AvD~s~~Rl 203 (355)
.+.+++|++||=.+ .|+....+++ ..+ .+ |++++.++.++
T Consensus 158 ~~~~~~g~~vlV~G--~G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~ 201 (339)
T cd08239 158 RVGVSGRDTVLVVG--AGPVGLGALMLARALG-AEDVIGVDPSPERL 201 (339)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHcC-CCEEEEECCCHHHH
Confidence 34678899998874 3666554443 333 56 99999999888
No 326
>PRK09242 tropinone reductase; Provisional
Probab=49.00 E-value=1.8e+02 Score=26.42 Aligned_cols=112 Identities=9% Similarity=-0.090 Sum_probs=57.5
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------------
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------- 229 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------- 229 (355)
|..+|=.+ |.|+.+..++..+ ...+|++++.+...+ +...+. .. ....++.++..|...
T Consensus 9 ~k~~lItG-a~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~--~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 9 GQTALITG-ASKGIGLAIAREFLGLGADVLIVARDADALAQARDELA--EE-FPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--hh-CCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 44555554 4667777777643 235788888887776 444443 10 111245555556432
Q ss_pred ----eecccCCCCCccCCc-cccchHHHHhhhh--HH---HHHHHHHhhcc--CCcEEEEEeCCC
Q psy7769 230 ----VYSTCSLSPIQNDGV-VHMSLKRIWEETG--CE---IEIKHALKLVK--VGGSVVYSTCSL 282 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~-l~~~~~~l~~l~~--lQ---~lL~~A~~~Lk--pGG~lVYsTCSl 282 (355)
+|.-....|...... ..++.+.+.+... +. .+++++++.++ ++|.+|+.++..
T Consensus 85 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~ 149 (257)
T PRK09242 85 HWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVS 149 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccc
Confidence 344333334211111 2233443333222 11 56666666663 458898877754
No 327
>PRK05867 short chain dehydrogenase; Provisional
Probab=48.71 E-value=1.5e+02 Score=27.02 Aligned_cols=55 Identities=15% Similarity=-0.069 Sum_probs=33.0
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
|..||=.+ |.|+.+.+++..+ ...+|+.++.+...+ +...++ . .+ .++.++..|.
T Consensus 9 ~k~vlVtG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--~--~~-~~~~~~~~D~ 67 (253)
T PRK05867 9 GKRALITG-ASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIG--T--SG-GKVVPVCCDV 67 (253)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH--h--cC-CeEEEEEccC
Confidence 55666555 4667788877654 235799999888777 444444 1 12 2345555554
No 328
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=48.52 E-value=55 Score=31.24 Aligned_cols=40 Identities=18% Similarity=0.077 Sum_probs=26.0
Q ss_pred hCCCCCCeEeeecccCcchH---HHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKT---LVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT---~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||-.++ |+.. .++|+..+...|++++.+..+.
T Consensus 163 ~~~~~~~~VlI~g~--g~vg~~~iqlak~~g~~~v~~~~~~~~~~ 205 (347)
T cd05278 163 AGIKPGSTVAVIGA--GPVGLCAVAGARLLGAARIIAVDSNPERL 205 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 35678999999543 4443 4455544324788998887776
No 329
>PRK05876 short chain dehydrogenase; Provisional
Probab=47.55 E-value=1.9e+02 Score=27.06 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=32.6
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
|..|| +.-|.|+.+.+++..+ ...+|+..|.+...+ +...++ . .+ .++.++..|..
T Consensus 6 ~k~vl-VTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~--~--~~-~~~~~~~~Dv~ 65 (275)
T PRK05876 6 GRGAV-ITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLR--A--EG-FDVHGVMCDVR 65 (275)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--h--cC-CeEEEEeCCCC
Confidence 44566 4445677888887654 235788888887776 433443 1 12 23455555643
No 330
>KOG0822|consensus
Probab=46.61 E-value=49 Score=35.15 Aligned_cols=118 Identities=11% Similarity=-0.033 Sum_probs=70.0
Q ss_pred eEeeecccCcchHH---HHHHhc-CCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 169 TVLDMCAAPGGKTL---VALQTL-YPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 169 ~VLD~CAgPGgKT~---~la~~~-~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
.|+=+|||-|-..- .+|... .+-+++|+|.++..+ .-+|.+. . .=...|+++..|.+..-+|-- -.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~-~--~W~~~Vtii~~DMR~w~ap~e----q~-- 440 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF-E--CWDNRVTIISSDMRKWNAPRE----QA-- 440 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch-h--hhcCeeEEEeccccccCCchh----hc--
Confidence 56778898886543 444444 347899999999999 3233331 1 112568999999988667610 00
Q ss_pred ccccchHHHHhhh--hHH-HHHHHHHhhccCCcEEEEE--eCCCCCCCCHHHHHHHHH
Q psy7769 244 VVHMSLKRIWEET--GCE-IEIKHALKLVKVGGSVVYS--TCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 244 ~l~~~~~~l~~l~--~lQ-~lL~~A~~~LkpGG~lVYs--TCSl~~~ENE~vV~~~L~ 296 (355)
++.- .+-+-.+. +|- +-|..|-++|||.|+-+=+ |.-+.|.-....-+.+-+
T Consensus 441 DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a 497 (649)
T KOG0822|consen 441 DIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKA 497 (649)
T ss_pred cchH-HHhhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHh
Confidence 0000 00000011 122 7899999999999988732 455666666655555544
No 331
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.74 E-value=2.2e+02 Score=26.21 Aligned_cols=34 Identities=15% Similarity=-0.063 Sum_probs=21.6
Q ss_pred CCCeEeeecccC-cchHHHHHHhc--CCCcEEEEcCC
Q psy7769 166 PYDTVLDMCAAP-GGKTLVALQTL--YPDYYCMDGAS 199 (355)
Q Consensus 166 pG~~VLD~CAgP-GgKT~~la~~~--~~g~V~AvD~s 199 (355)
.|..+|=.++++ +|....++..+ ...+|+..+.+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 355677667663 78888877644 22567776654
No 332
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=45.61 E-value=57 Score=33.39 Aligned_cols=39 Identities=5% Similarity=-0.210 Sum_probs=29.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+|++|+=+++||=|............+|+++|+++.|+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~ 238 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICA 238 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhH
Confidence 479999999999866655433333336899999999988
No 333
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=45.51 E-value=2.2e+02 Score=25.36 Aligned_cols=56 Identities=11% Similarity=-0.140 Sum_probs=33.7
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+.+|| +..|.|+.+.+++..+ ....|++++.+...+ +...+. . ...++.++..|..
T Consensus 6 ~~~il-ItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~--~---~~~~~~~~~~Dl~ 65 (251)
T PRK12826 6 GRVAL-VTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVE--A---AGGKARARQVDVR 65 (251)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--h---cCCeEEEEECCCC
Confidence 45677 4445788888887643 235799999987766 333343 1 1123566666653
No 334
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=45.22 E-value=2.2e+02 Score=25.62 Aligned_cols=56 Identities=13% Similarity=-0.025 Sum_probs=33.8
Q ss_pred CCeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+.+|| +..|+|+.+.+++..+ . ..+|++++.++..+ +...++ . .+ .++.++..|..
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~--~~-~~~~~~~~Dl~ 63 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ--K--AG-GKAIGVAMDVT 63 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH--h--cC-CcEEEEEcCCC
Confidence 33455 5566888899988753 2 35799999888776 434443 1 11 23455555543
No 335
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=45.13 E-value=62 Score=31.29 Aligned_cols=119 Identities=11% Similarity=0.002 Sum_probs=64.5
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCC----CcEEEEcCCchhh---HHhhccccccccCcceEEEEEeccee-
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP----DYYCMDGASLLPV---LALNIRPYDTVLDIHALKLVKVGGSV- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~----g~V~AvD~s~~Rl---l~~~l~r~~~~~g~~~v~~~~~Da~~- 229 (355)
++.+....-+...+|+++|.-.||..+...+.. .+-+.+|+++.-+ ++..+. .| ++. .+.-+++|-..
T Consensus 70 a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~--~y-~~l-~v~~l~~~~~~~ 145 (321)
T COG4301 70 AAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR--EY-PGL-EVNALCGDYELA 145 (321)
T ss_pred HHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH--hC-CCC-eEeehhhhHHHH
Confidence 334444455889999999999999988765532 6789999999888 444444 33 232 12333444322
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
.-.| +.| +|-+.|--..+-++..-. ..|......+.||-.+..-+=-..+.
T Consensus 146 La~~~--~~~---~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~A 199 (321)
T COG4301 146 LAELP--RGG---RRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPA 199 (321)
T ss_pred Hhccc--CCC---eEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHH
Confidence 1122 111 111111111111111111 45666777788888777665544443
No 336
>PRK07677 short chain dehydrogenase; Provisional
Probab=44.45 E-value=2.3e+02 Score=25.70 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=30.0
Q ss_pred eEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 169 TVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
++| +..|.|+.+.+++..+ ...+|++++.+..++ +...+. . .+ .++.++..|.
T Consensus 3 ~~l-ItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~--~~-~~~~~~~~D~ 59 (252)
T PRK07677 3 VVI-ITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIE--Q--FP-GQVLTVQMDV 59 (252)
T ss_pred EEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--h--cC-CcEEEEEecC
Confidence 455 4445666777777643 235788888887766 444443 1 11 2355555554
No 337
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.38 E-value=2.4e+02 Score=25.79 Aligned_cols=33 Identities=9% Similarity=-0.092 Sum_probs=20.7
Q ss_pred CCeEeeecccC-cchHHHHHHhc--CCCcEEEEcCC
Q psy7769 167 YDTVLDMCAAP-GGKTLVALQTL--YPDYYCMDGAS 199 (355)
Q Consensus 167 G~~VLD~CAgP-GgKT~~la~~~--~~g~V~AvD~s 199 (355)
|..||=.+++. +|....+++.+ ...+|+.++.+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 55677666654 57777777643 23567777766
No 338
>PRK06125 short chain dehydrogenase; Provisional
Probab=44.22 E-value=2.2e+02 Score=25.91 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=26.9
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
|.+||= ..|.|+.+.+++..+ ...+|++++.+..++ +...+.
T Consensus 7 ~k~vlI-tG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 7 GKRVLI-TGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLR 52 (259)
T ss_pred CCEEEE-eCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 444444 445777888877643 235899999888777 444443
No 339
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=44.20 E-value=1.5e+02 Score=28.79 Aligned_cols=41 Identities=17% Similarity=-0.024 Sum_probs=28.3
Q ss_pred hCCCCCCeEeeeccc--CcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAA--PGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAg--PGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||=.+|+ -|..+.++|...+ .+|++.+.++.+.
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~ 196 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKV 196 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHH
Confidence 357899999876652 3444455665543 5799999888877
No 340
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.12 E-value=1.6e+02 Score=28.40 Aligned_cols=41 Identities=22% Similarity=0.040 Sum_probs=27.7
Q ss_pred hhCCCCCCeEeeecccCcchHH---HHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTL---VALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~---~la~~~~~g~V~AvD~s~~Rl 203 (355)
....++|++||=.++ |.... ++|+..+-..|+++|.++++.
T Consensus 161 ~~~~~~g~~vlI~g~--g~iG~~~~~lak~~G~~~v~~~~~~~~~~ 204 (351)
T cd08285 161 LANIKLGDTVAVFGI--GPVGLMAVAGARLRGAGRIIAVGSRPNRV 204 (351)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Confidence 345778999988743 54444 444444434699999998888
No 341
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=43.63 E-value=1.9e+02 Score=24.14 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=56.0
Q ss_pred cccCcchHHHHHHhc--C-CCcEEEEcCC--chhh--HHhhccccccccCcceEEEEEeccee-----------------
Q psy7769 174 CAAPGGKTLVALQTL--Y-PDYYCMDGAS--LLPV--LALNIRPYDTVLDIHALKLVKVGGSV----------------- 229 (355)
Q Consensus 174 CAgPGgKT~~la~~~--~-~g~V~AvD~s--~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----------------- 229 (355)
..|.|+.+..++..+ . ...|+.+..+ ..+. +...++ . .+ .++.+...|...
T Consensus 6 tGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~--~--~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 6 TGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELK--A--PG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp ETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH--H--TT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred ECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccc--c--cc-ccccccccccccccccccccccccccccc
Confidence 445677787777643 2 2367788777 4555 544454 2 23 567788777543
Q ss_pred eecccCCCCCccCCccc-cchHHHHhhhhHH-----HHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 VYSTCSLSPIQNDGVVH-MSLKRIWEETGCE-----IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~-~~~~~l~~l~~lQ-----~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+|.-+...|+...+.+. ...+.+.+..... .+.+.+.. +++|.||+.+..
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~~g~iv~~sS~ 136 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP--QGGGKIVNISSI 136 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--HTTEEEEEEEEG
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehhee--ccccceEEecch
Confidence 66666556643333332 3344333332222 34444444 678888876543
No 342
>PRK05599 hypothetical protein; Provisional
Probab=43.51 E-value=1.4e+02 Score=27.25 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=19.8
Q ss_pred ccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhcc
Q psy7769 175 AAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 175 AgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.|.+|.+..++..+ ...+|+..+.+..++ +.+.++
T Consensus 7 Gas~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~ 44 (246)
T PRK05599 7 GGTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLR 44 (246)
T ss_pred eCccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Confidence 34556666666533 235677777776666 444443
No 343
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=43.18 E-value=1.3e+02 Score=28.31 Aligned_cols=41 Identities=15% Similarity=-0.155 Sum_probs=27.2
Q ss_pred hhCCCCCCeEeeecccCcchHH---HHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTL---VALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~---~la~~~~~g~V~AvD~s~~Rl 203 (355)
...+++|++||=.+ |.|+... ++|... ..+|++.+.++++.
T Consensus 138 ~~~~~~g~~vlI~g-a~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~ 181 (329)
T cd08294 138 ICKPKAGETVVVNG-AAGAVGSLVGQIAKIK-GCKVIGCAGSDDKV 181 (329)
T ss_pred hcCCCCCCEEEEec-CccHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence 34578999998554 3455444 445444 35799999888877
No 344
>PRK06484 short chain dehydrogenase; Validated
Probab=42.79 E-value=2e+02 Score=29.42 Aligned_cols=37 Identities=8% Similarity=-0.041 Sum_probs=26.3
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
.|..+| +..|.||...+++..+ ...+|+.++.+..++
T Consensus 268 ~~k~~l-ItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~ 306 (520)
T PRK06484 268 SPRVVA-ITGGARGIGRAVADRFAAAGDRLLIIDRDAEGA 306 (520)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 344555 5666788888888754 236899999988777
No 345
>PRK07890 short chain dehydrogenase; Provisional
Probab=41.59 E-value=2.7e+02 Score=25.14 Aligned_cols=36 Identities=6% Similarity=-0.094 Sum_probs=25.0
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
+.+|| +..|.|+.+.+++..+ ...+|+.++.++..+
T Consensus 5 ~k~vl-ItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~ 42 (258)
T PRK07890 5 GKVVV-VSGVGPGLGRTLAVRAARAGADVVLAARTAERL 42 (258)
T ss_pred CCEEE-EECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 44566 4556778888888644 235788999887766
No 346
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=41.43 E-value=1.4e+02 Score=28.61 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=26.5
Q ss_pred HhhCCCCCCeEeeecccCcchHH---HHHHhcCCCc-EEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTL---VALQTLYPDY-YCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~---~la~~~~~g~-V~AvD~s~~Rl 203 (355)
....+++|++||=.+ .|+... ++|...+ .. |++.+.+..+.
T Consensus 156 ~~~~~~~g~~vlI~g--~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~ 200 (343)
T cd05285 156 RRAGVRPGDTVLVFG--AGPIGLLTAAVAKAFG-ATKVVVTDIDPSRL 200 (343)
T ss_pred HhcCCCCCCEEEEEC--CCHHHHHHHHHHHHcC-CcEEEEECCCHHHH
Confidence 345678999998854 354444 3444432 45 89998887776
No 347
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=41.42 E-value=2.7e+02 Score=25.21 Aligned_cols=30 Identities=10% Similarity=-0.020 Sum_probs=21.7
Q ss_pred cccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 174 CAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 174 CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
..|+|+.+.+++..+ ...+|++++.++..+
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~ 37 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERL 37 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 456788888888654 235789999888776
No 348
>PRK12829 short chain dehydrogenase; Provisional
Probab=41.40 E-value=2.7e+02 Score=25.15 Aligned_cols=42 Identities=12% Similarity=-0.099 Sum_probs=29.9
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
.+..-++.+||=.++ .|+.+.+++..+ ....|++++.++..+
T Consensus 5 ~~~~~~~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~ 48 (264)
T PRK12829 5 LLKPLDGLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAAL 48 (264)
T ss_pred HhhccCCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 344456778886665 588888888654 236799999987766
No 349
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=41.33 E-value=26 Score=34.33 Aligned_cols=126 Identities=14% Similarity=0.056 Sum_probs=68.4
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEE-----------------ec
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVK-----------------VG 226 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~-----------------~D 226 (355)
.-++||+|+|.-..-..|+....+-+.+|.|+++.-+ +++|++ .+ .+. ..|+++. .|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~--~N-~~L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVE--RN-PNLESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH--HT--T-TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHH--hc-cccccceEEEEcCCccccchhhhcccceee
Confidence 4589999999988766666554568999999999999 888887 31 122 3454442 22
Q ss_pred ceeeecccCCCCC-----ccCCc--cc------------c---chHHHHhhhhHH---HHHHHHHhhccCCcEEEEEeCC
Q psy7769 227 GSVVYSTCSLSPI-----QNDGV--VH------------M---SLKRIWEETGCE---IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 227 a~~lDaPCSgsG~-----t~~~~--l~------------~---~~~~l~~l~~lQ---~lL~~A~~~LkpGG~lVYsTCS 281 (355)
...+.||.=.+-- +.+.. +. + ..+-..+-.+.. +|+++...+- .++..-||=
T Consensus 180 ftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~---~~v~WfTsm 256 (299)
T PF05971_consen 180 FTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLK---DQVRWFTSM 256 (299)
T ss_dssp EEEE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHG---GGEEEEEEE
T ss_pred EEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhC---CCcEEEeec
Confidence 2336666532220 00000 00 0 001111122333 7888887763 355555889
Q ss_pred CCCCCCHHHHHHHHHhh
Q psy7769 282 LSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 282 l~~~ENE~vV~~~L~~~ 298 (355)
+...+|-..+...|++.
T Consensus 257 vgKkssL~~l~~~L~~~ 273 (299)
T PF05971_consen 257 VGKKSSLKPLKKELKKL 273 (299)
T ss_dssp ESSGGGHHHHHHHHHHT
T ss_pred ccCcccHHHHHHHHHhc
Confidence 99999999999999875
No 350
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=41.25 E-value=30 Score=29.09 Aligned_cols=36 Identities=19% Similarity=-0.009 Sum_probs=22.6
Q ss_pred eecccCc--chHHHHH--HhcCCCcEEEEcCCchhh--HHhh
Q psy7769 172 DMCAAPG--GKTLVAL--QTLYPDYYCMDGASLLPV--LALN 207 (355)
Q Consensus 172 D~CAgPG--gKT~~la--~~~~~g~V~AvD~s~~Rl--l~~~ 207 (355)
|++|.-| ..+..++ .....++|+|+|.++..+ ++++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8899999 6555554 233458899999999988 7777
No 351
>PRK08265 short chain dehydrogenase; Provisional
Probab=40.84 E-value=2.9e+02 Score=25.32 Aligned_cols=36 Identities=3% Similarity=-0.219 Sum_probs=23.4
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
|.+||= .-|.|+.+.+++..+ ...+|+.+|.+...+
T Consensus 6 ~k~vlI-tGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~ 43 (261)
T PRK08265 6 GKVAIV-TGGATLIGAAVARALVAAGARVAIVDIDADNG 43 (261)
T ss_pred CCEEEE-ECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 445554 445677788777643 235788888887655
No 352
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=40.52 E-value=1.3e+02 Score=30.17 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=27.4
Q ss_pred hCCCCCCeEeeecc-c-CcchHHHHHHhcC--CCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCA-A-PGGKTLVALQTLY--PDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CA-g-PGgKT~~la~~~~--~g~V~AvD~s~~Rl 203 (355)
..+++|++||=.++ | -|..++++|...+ ..+|+++|.++.|+
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~ 216 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERL 216 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHH
Confidence 35688999886643 2 2333344555432 23799999999998
No 353
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=40.12 E-value=16 Score=33.77 Aligned_cols=36 Identities=14% Similarity=-0.023 Sum_probs=26.4
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
+..+++|..||.|+.+..+.. ....|+++|++..-.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~ 55 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLI 55 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHH
T ss_pred CCCEEEEEecchhHHHHHhcc--cccceeeeechHHHH
Confidence 688999999999998887765 337899999999766
No 354
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=40.10 E-value=2.6e+02 Score=29.98 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=39.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh--HHhhcccccc-ccC---cceEEEEEeccee
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV--LALNIRPYDT-VLD---IHALKLVKVGGSV 229 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl--l~~~l~r~~~-~~g---~~~v~~~~~Da~~ 229 (355)
+.+.|..||= ..|.|+.+.+++..+ . ...|++++.+..++ +...+..... ..+ ..++.++.+|...
T Consensus 76 ~~~~gKvVLV-TGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD 149 (576)
T PLN03209 76 DTKDEDLAFV-AGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK 149 (576)
T ss_pred ccCCCCEEEE-ECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence 4456766665 555788999888654 2 35799999988877 4443321000 001 1246777777654
No 355
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=39.97 E-value=1.4e+02 Score=28.51 Aligned_cols=43 Identities=19% Similarity=-0.004 Sum_probs=26.1
Q ss_pred hhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+.+++|++||-.++|. |..+.++|...+-..|++.+.+..+.
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~ 197 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKL 197 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 44677899999984322 22334455444322388888877666
No 356
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=39.80 E-value=1.2e+02 Score=28.72 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=26.6
Q ss_pred hhCCCCCCeEeeecccCcchHHH---HHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLV---ALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~---la~~~~~g~V~AvD~s~~Rl 203 (355)
...+++|++||-.+ .|+.+.. +|+..+-..|++++.++.+.
T Consensus 154 ~~~~~~g~~vlI~g--~g~vg~~~~~la~~~G~~~v~~~~~~~~~~ 197 (334)
T cd08234 154 LLGIKPGDSVLVFG--AGPIGLLLAQLLKLNGASRVTVAEPNEEKL 197 (334)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCcEEEEECCCHHHH
Confidence 44678899999984 3544443 44443212388999888877
No 357
>PRK06949 short chain dehydrogenase; Provisional
Probab=39.76 E-value=2.9e+02 Score=24.94 Aligned_cols=56 Identities=16% Similarity=0.045 Sum_probs=34.3
Q ss_pred CCCeEeeecccCcchHHHHHHhc-CC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL-YP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~-~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.|.+||=.+ |.|+.+.+++..+ .. .+|++.+.+..++ +...+. . .+ .++.++..|.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~--~--~~-~~~~~~~~D~ 67 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIE--A--EG-GAAHVVSLDV 67 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--h--cC-CcEEEEEecC
Confidence 355666544 6788888888654 22 4799999988877 544443 1 11 2345555564
No 358
>PRK06482 short chain dehydrogenase; Provisional
Probab=39.76 E-value=2.6e+02 Score=25.74 Aligned_cols=34 Identities=15% Similarity=-0.024 Sum_probs=24.0
Q ss_pred eEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh
Q psy7769 169 TVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV 203 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl 203 (355)
+|| +.-|.|+.+.+++..+ . ..+|++++.++.++
T Consensus 4 ~vl-VtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~ 39 (276)
T PRK06482 4 TWF-ITGASSGFGRGMTERLLARGDRVAATVRRPDAL 39 (276)
T ss_pred EEE-EecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 345 5566888888888654 2 25788888887766
No 359
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=39.65 E-value=2.2e+02 Score=25.94 Aligned_cols=34 Identities=9% Similarity=-0.114 Sum_probs=21.1
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASL 200 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~ 200 (355)
.|.+|| +..|.||....+++.+ ...+|++++.+.
T Consensus 7 ~~k~~l-ItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 7 NGKVAI-ITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred CCCEEE-EeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 355666 4445677888877643 235677777653
No 360
>KOG2940|consensus
Probab=39.57 E-value=36 Score=32.56 Aligned_cols=103 Identities=14% Similarity=0.042 Sum_probs=61.0
Q ss_pred HHHHhhCCC-CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEeccee-----
Q psy7769 157 LPVLALNIR-PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSV----- 229 (355)
Q Consensus 157 l~~~~L~~~-pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~----- 229 (355)
++-.+.+.+ ....++|++|+-|...-|+.... -++++-.|.|..++ -.+-.+ . +++. +.....|-..
T Consensus 62 laDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q--d--p~i~-~~~~v~DEE~Ldf~e 135 (325)
T KOG2940|consen 62 LADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ--D--PSIE-TSYFVGDEEFLDFKE 135 (325)
T ss_pred HHHHHHHHhhhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC--C--CceE-EEEEecchhcccccc
Confidence 333444443 45689999999999998886543 37899999999998 333332 1 2222 1222334333
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+|.--|+.+ ++|..+ ++.-...+...|||.|.++-|
T Consensus 136 ns~DLiisSls------lHW~Nd-------LPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 136 NSVDLIISSLS------LHWTND-------LPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred cchhhhhhhhh------hhhhcc-------CchHHHHHHHhcCCCccchhH
Confidence 565555555 455422 222344566678888877643
No 361
>PRK12744 short chain dehydrogenase; Provisional
Probab=39.24 E-value=2.1e+02 Score=25.98 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=17.5
Q ss_pred HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+++.+++.++++|.+++...|.
T Consensus 126 ~~~~~~~~~~~~~~~iv~~~ss~ 148 (257)
T PRK12744 126 FFIKEAGRHLNDNGKIVTLVTSL 148 (257)
T ss_pred HHHHHHHHhhccCCCEEEEecch
Confidence 56788888888888888865553
No 362
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.91 E-value=2.7e+02 Score=24.69 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=25.7
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
|.+||=.++ +|+.+.++++.+ ....|++.+.+...+
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~ 42 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKL 42 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 556776665 587888888654 235799999888776
No 363
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=38.80 E-value=3e+02 Score=24.90 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=26.4
Q ss_pred CCeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh--HHhhcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
|..+|= ..|.|+.+.+++..+ . ..+|+..+.+..++ +...++
T Consensus 9 ~k~~lI-tGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~ 54 (254)
T PRK08085 9 GKNILI-TGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR 54 (254)
T ss_pred CCEEEE-ECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH
Confidence 434554 446677888887654 2 35788888887776 444443
No 364
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=38.51 E-value=67 Score=30.58 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=52.2
Q ss_pred ecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----------------eeccc
Q psy7769 173 MCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----------------VYSTC 234 (355)
Q Consensus 173 ~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----------------lDaPC 234 (355)
+..-||+=.+....+-...+++++|+++.-. |++++. +..++.+...||.. +|||-
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~------~~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpY 135 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFR------RDRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPY 135 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--------TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE----
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhc------cCCccEEEeCchhhhhhhhCCCCCCCeEEEECCCC
Confidence 4568997555443333458999999999988 888877 23578999999854 55554
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+.-.+...+-+.|..|++--.- |+++. ++|.-+...++.+++..
T Consensus 136 ---------------E~~~dy~~v~~~l~~a~kR~~~-G~~~i----WYPi~~~~~~~~~~~~l 179 (245)
T PF04378_consen 136 ---------------EQKDDYQRVVDALAKALKRWPT-GVYAI----WYPIKDRERVDRFLRAL 179 (245)
T ss_dssp ----------------STTHHHHHHHHHHHHHHH-TT-SEEEE----EEEESSHHHHHHHHHHH
T ss_pred ---------------CCchHHHHHHHHHHHHHHhcCC-cEEEE----EeecccHHHHHHHHHHH
Confidence 1111222223667777776655 44332 34555666777777665
No 365
>PRK12937 short chain dehydrogenase; Provisional
Probab=38.29 E-value=2.9e+02 Score=24.61 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=18.8
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
.++..+++.++.+|.+|+.+++..
T Consensus 120 ~~~~~~~~~~~~~~~iv~~ss~~~ 143 (245)
T PRK12937 120 VVLREAARHLGQGGRIINLSTSVI 143 (245)
T ss_pred HHHHHHHHHhccCcEEEEEeeccc
Confidence 567777778888899999987643
No 366
>KOG1429|consensus
Probab=37.51 E-value=1e+02 Score=30.40 Aligned_cols=107 Identities=9% Similarity=-0.033 Sum_probs=60.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhhHHhhccccccccCcceEEEEEeccee-----------ee
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSV-----------VY 231 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~-----------lD 231 (355)
..+-+|+= ..|-|-.+.||+..+ ....|+|+|.-..-. ++|+. .. .+..+++++..|... +-
T Consensus 25 ~~~lrI~i-tGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~-k~n~~--~~-~~~~~fel~~hdv~~pl~~evD~IyhLA 99 (350)
T KOG1429|consen 25 SQNLRILI-TGGAGFIGSHLVDKLMTEGHEVIALDNYFTGR-KENLE--HW-IGHPNFELIRHDVVEPLLKEVDQIYHLA 99 (350)
T ss_pred CCCcEEEE-ecCcchHHHHHHHHHHhcCCeEEEEecccccc-hhhcc--hh-ccCcceeEEEeechhHHHHHhhhhhhhc
Confidence 34456664 445677899999743 336799999754322 34444 21 344667777777654 78
Q ss_pred cccCCCCCccCCc--cccch-HHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 232 STCSLSPIQNDGV--VHMSL-KRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 232 aPCSgsG~t~~~~--l~~~~-~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
+|||+.+.-...+ ++..- ..+ .+|.-|.+.=+ -.|..|||-+.++
T Consensus 100 apasp~~y~~npvktIktN~igtl-------n~lglakrv~a--R~l~aSTseVYgd 147 (350)
T KOG1429|consen 100 APASPPHYKYNPVKTIKTNVIGTL-------NMLGLAKRVGA--RFLLASTSEVYGD 147 (350)
T ss_pred cCCCCcccccCccceeeecchhhH-------HHHHHHHHhCc--eEEEeecccccCC
Confidence 8998777322222 22110 101 34555655532 2555679988766
No 367
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=37.42 E-value=3.2e+02 Score=24.78 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=25.3
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
+..|| +..|.|+.+.+++..+ ...+|+++|.+..++
T Consensus 6 ~~~vl-ItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~ 43 (257)
T PRK07067 6 GKVAL-LTGAASGIGEAVAERYLAEGARVVIADIKPARA 43 (257)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence 33455 4557788888888754 235799999888776
No 368
>PRK07454 short chain dehydrogenase; Provisional
Probab=37.36 E-value=3e+02 Score=24.56 Aligned_cols=55 Identities=15% Similarity=-0.017 Sum_probs=32.5
Q ss_pred CeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 168 DTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.++|=.+ |.|+.+..++..+ . ..+|++++.++... +.+.++ . .+ .++.++..|..
T Consensus 7 k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~-~~~~~~~~D~~ 65 (241)
T PRK07454 7 PRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR--S--TG-VKAAAYSIDLS 65 (241)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--h--CC-CcEEEEEccCC
Confidence 3455444 5788888888644 2 25799999887766 444443 1 11 23555566643
No 369
>PRK07478 short chain dehydrogenase; Provisional
Probab=36.68 E-value=3.2e+02 Score=24.67 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=27.3
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
|..+| +..|.||.+.+++..+ ...+|+..+.++..+ +...++
T Consensus 6 ~k~~l-ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 51 (254)
T PRK07478 6 GKVAI-ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIR 51 (254)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 44555 5556778888877643 235788888888777 444444
No 370
>PRK07832 short chain dehydrogenase; Provisional
Probab=36.58 E-value=3e+02 Score=25.38 Aligned_cols=30 Identities=10% Similarity=-0.034 Sum_probs=18.8
Q ss_pred cccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 174 CAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 174 CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
..|.|+.+.++++.+ ....|+.++.+...+
T Consensus 6 tGas~giG~~la~~la~~G~~vv~~~r~~~~~ 37 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGL 37 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 345677777776543 235677777776655
No 371
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.14 E-value=3.5e+02 Score=24.85 Aligned_cols=35 Identities=6% Similarity=-0.079 Sum_probs=23.5
Q ss_pred CCCeEeeeccc-CcchHHHHHHhc-C-CCcEEEEcCCc
Q psy7769 166 PYDTVLDMCAA-PGGKTLVALQTL-Y-PDYYCMDGASL 200 (355)
Q Consensus 166 pG~~VLD~CAg-PGgKT~~la~~~-~-~g~V~AvD~s~ 200 (355)
.|..+|=.+++ .+|....+++.+ . ..+|+..+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 35577777775 678888887644 2 35788887654
No 372
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=36.04 E-value=84 Score=32.15 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 261 EIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 261 lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
..+...+.+++ |.+|.-..|+.|...+.++..++++
T Consensus 102 a~~~i~~~l~~-g~lVI~~STv~pgtt~~~~~~~l~~ 137 (425)
T PRK15182 102 ASETVGTVLNR-GDIVVYESTVYPGCTEEECVPILAR 137 (425)
T ss_pred HHHHHHHhcCC-CCEEEEecCCCCcchHHHHHHHHHh
Confidence 34566667787 5777778999999999999999886
No 373
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=35.73 E-value=2e+02 Score=27.29 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=28.2
Q ss_pred HhhCCCCCCeEeeecccCcchH---HHHHHhcCCCcEEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKT---LVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT---~~la~~~~~g~V~AvD~s~~Rl 203 (355)
....+++|++||=.++ |+.. +++|......+|++.+.++++.
T Consensus 156 ~~~~~~~g~~vlV~g~--g~vG~~~~~la~~~~g~~v~~~~~~~~~~ 200 (338)
T PRK09422 156 KVSGIKPGQWIAIYGA--GGLGNLALQYAKNVFNAKVIAVDINDDKL 200 (338)
T ss_pred HhcCCCCCCEEEEECC--cHHHHHHHHHHHHhCCCeEEEEeCChHHH
Confidence 3456789999888763 4433 3444432246899999998887
No 374
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=35.62 E-value=2.3e+02 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=28.2
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEE
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~ 308 (355)
+++....++++|||+++-.|++ ..|++.|.. .|++++.
T Consensus 187 ~~~~~l~~~~~~~~~~~t~t~a-------~~vr~~l~~----~GF~v~~ 224 (662)
T PRK01747 187 NLFNALARLARPGATLATFTSA-------GFVRRGLQE----AGFTVRK 224 (662)
T ss_pred HHHHHHHHHhCCCCEEEEeehH-------HHHHHHHHH----cCCeeee
Confidence 6788999999999999944443 678888875 4666553
No 375
>KOG1331|consensus
Probab=34.81 E-value=74 Score=31.09 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=50.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEeccee-------eecccCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCSL 236 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCSg 236 (355)
..|..++|.+||-|--+.. .+...++++|++..-+ ..++.. .. .+...|+.. +|+--|-
T Consensus 44 ~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~-------~~--~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSG-------GD--NVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred CCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCC-------Cc--eeehhhhhcCCCCCCccccchhh
Confidence 3488999999999853321 1235688999887655 322221 11 344556544 2222211
Q ss_pred CCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 237 SPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 237 sG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+- ++ |+....+ -.++++..+.|+|||.......++
T Consensus 111 av------ihhlsT~~RR-----~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 111 AV------IHHLSTRERR-----ERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hh------hhhhhhHHHH-----HHHHHHHHHHhcCCCceEEEEehh
Confidence 10 12 1111111 178999999999999754333333
No 376
>PRK07806 short chain dehydrogenase; Provisional
Probab=33.92 E-value=2.5e+02 Score=25.16 Aligned_cols=33 Identities=12% Similarity=-0.055 Sum_probs=21.2
Q ss_pred CCeEeeecccCcchHHHHHHhc-CC-CcEEEEcCCc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL-YP-DYYCMDGASL 200 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~-~~-g~V~AvD~s~ 200 (355)
|.+||- ..|+|+.+.+++..+ .. ..|++++.+.
T Consensus 6 ~k~vlI-tGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 6 GKTALV-TGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CcEEEE-ECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 456664 445778888887643 22 4688877654
No 377
>PRK06172 short chain dehydrogenase; Provisional
Probab=33.49 E-value=3.6e+02 Score=24.28 Aligned_cols=56 Identities=9% Similarity=-0.064 Sum_probs=33.7
Q ss_pred CCeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
|.+||=.+ |.|+.+..++..+ . ..+|++++.+...+ +...++ . .+ .++.++..|..
T Consensus 7 ~k~ilItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~--~~-~~~~~~~~D~~ 66 (253)
T PRK06172 7 GKVALVTG-GAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIR--E--AG-GEALFVACDVT 66 (253)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--h--cC-CceEEEEcCCC
Confidence 44566555 4677788777643 2 35799999988776 444444 2 12 23556666653
No 378
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.11 E-value=4e+02 Score=24.75 Aligned_cols=34 Identities=12% Similarity=-0.161 Sum_probs=20.8
Q ss_pred CCeEeeecccC-cchHHHHHHhc--CCCcEEEEcCCc
Q psy7769 167 YDTVLDMCAAP-GGKTLVALQTL--YPDYYCMDGASL 200 (355)
Q Consensus 167 G~~VLD~CAgP-GgKT~~la~~~--~~g~V~AvD~s~ 200 (355)
|..+|=.+++. +|....+|..+ ...+|+.++.+.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~ 43 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGE 43 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCch
Confidence 55667666664 36777776543 225677777654
No 379
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=33.00 E-value=2.8e+02 Score=26.36 Aligned_cols=41 Identities=20% Similarity=-0.112 Sum_probs=25.5
Q ss_pred CCCCC--CeEeeecc--cCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 163 NIRPY--DTVLDMCA--APGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG--~~VLD~CA--gPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+++| ++||=.+| |-|..+.++|...+..+|++.+.++++.
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~ 193 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC 193 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 45666 88886654 2333344555554322799999988877
No 380
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=32.89 E-value=3.5e+02 Score=24.54 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=26.8
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
|.+||=.+ |.|+.+.++++.+ ...+|+.++.+...+ +...+.
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~ 57 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE 57 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 44555444 6778888888654 235788888887766 444443
No 381
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=32.67 E-value=3.7e+02 Score=24.18 Aligned_cols=56 Identities=13% Similarity=-0.048 Sum_probs=35.2
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
|.+|| +..|.|+.+.+++..+ ....|++++.++.+. +.+.++ . .+ .++.++..|..
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~--~~-~~~~~~~~Dl~ 66 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEIN--K--AG-GKAIGVAMDVT 66 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH--h--cC-ceEEEEECCCC
Confidence 55566 6667888888888643 235799999988766 444444 2 12 23555666653
No 382
>PRK06701 short chain dehydrogenase; Provisional
Probab=32.55 E-value=4.2e+02 Score=24.91 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=16.6
Q ss_pred HHHHHHHhhccCCcEEEEEeC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+++.+.+.++++|.+|+.+-
T Consensus 162 ~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 162 HMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHHHHHHHHhhCCeEEEEec
Confidence 677788887788889998764
No 383
>PRK07109 short chain dehydrogenase; Provisional
Probab=32.12 E-value=3.7e+02 Score=26.05 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=33.2
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+..|| +..|+|+...++++.+ ...+|+.++.+..++ +.+.++ . .+ .++.++..|..
T Consensus 8 ~k~vl-ITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~--~--~g-~~~~~v~~Dv~ 67 (334)
T PRK07109 8 RQVVV-ITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR--A--AG-GEALAVVADVA 67 (334)
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--H--cC-CcEEEEEecCC
Confidence 33444 4456778888887643 235788899888777 555444 2 12 23455556643
No 384
>PRK07985 oxidoreductase; Provisional
Probab=31.92 E-value=4.4e+02 Score=24.82 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=15.5
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy7769 260 IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsT 279 (355)
.+++.+.+.++.+|+||+.+
T Consensus 166 ~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 166 WLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HHHHHHHHhhhcCCEEEEEC
Confidence 67778888877889888843
No 385
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=31.82 E-value=1.1e+02 Score=29.36 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=37.2
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc-----CCCcEEEEcCCchhh-HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL-----YPDYYCMDGASLLPV-LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~-----~~g~V~AvD~s~~Rl-l~~~l~ 209 (355)
+.+...+++++||-|..+..+++.. ....++.+|....|. .-..++
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~ 67 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIR 67 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhh
Confidence 3567799999999999999999876 346899999998888 444444
No 386
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=31.80 E-value=3.6e+02 Score=23.78 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=29.5
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
..+.+|.++|+++|.|..+-|.-.|- +...|...-+
T Consensus 106 ~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~lA~ 141 (166)
T PF10354_consen 106 GFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEELAA 141 (166)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHHHH
Confidence 88999999999999999999999885 5555554443
No 387
>PRK06198 short chain dehydrogenase; Provisional
Probab=31.41 E-value=3.9e+02 Score=24.08 Aligned_cols=36 Identities=8% Similarity=-0.010 Sum_probs=23.4
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCc-EEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDY-YCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~-V~AvD~s~~Rl 203 (355)
+.+|| +..|.|+.+.++++.+ ...+ |++++.+....
T Consensus 6 ~k~vl-ItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~ 44 (260)
T PRK06198 6 GKVAL-VTGGTQGLGAAIARAFAERGAAGLVICGRNAEKG 44 (260)
T ss_pred CcEEE-EeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence 44566 4456777888887654 2245 88888876655
No 388
>PRK08267 short chain dehydrogenase; Provisional
Probab=30.82 E-value=4.1e+02 Score=24.08 Aligned_cols=30 Identities=7% Similarity=-0.198 Sum_probs=20.0
Q ss_pred cccCcchHHHHHHhc-C-CCcEEEEcCCchhh
Q psy7769 174 CAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV 203 (355)
Q Consensus 174 CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl 203 (355)
..|+|+.+..++..+ . ..+|++++.+...+
T Consensus 7 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~ 38 (260)
T PRK08267 7 TGAASGIGRATALLFAAEGWRVGAYDINEAGL 38 (260)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 445677787777643 2 25788888877666
No 389
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=30.76 E-value=42 Score=25.86 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=25.8
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhh
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIW 299 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~ 299 (355)
.|++.|+...+..|.-|..+||. |..++++|+
T Consensus 42 ~L~~~~l~~a~~~~~kv~p~C~y--------~~~~~~~hp 73 (78)
T PF14542_consen 42 KLVEAALDYARENGLKVVPTCSY--------VAKYFRRHP 73 (78)
T ss_dssp HHHHHHHHHHHHTT-EEEETSHH--------HHHHHHH-G
T ss_pred HHHHHHHHHHHHCCCEEEEECHH--------HHHHHHhCc
Confidence 78899999999999999999997 667777764
No 390
>KOG3924|consensus
Probab=30.74 E-value=98 Score=31.65 Aligned_cols=124 Identities=13% Similarity=0.029 Sum_probs=71.2
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh---------HHhhccccccccCc--ceEEEEEec
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV---------LALNIRPYDTVLDI--HALKLVKVG 226 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl---------l~~~l~r~~~~~g~--~~v~~~~~D 226 (355)
.+.-|++.++|...|+++|-|+-...+|.......=+++++...-- .++.++ . .|- ..+..++++
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k--~--fGk~~~~~~~i~gs 259 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMK--H--FGKKPNKIETIHGS 259 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHH--H--hCCCcCceeecccc
Confidence 4567788999999999999999988887765444445555543322 111222 1 222 335666776
Q ss_pred cee------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC-----CCCHHHHHHHH
Q psy7769 227 GSV------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP-----IQNDGVVHMSL 295 (355)
Q Consensus 227 a~~------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~-----~ENE~vV~~~L 295 (355)
... +++-|.- +.--+++++++...+ +.+.+.-+++| +=+.|+=++.+ +-|-..+..|+
T Consensus 260 f~~~~~v~eI~~eatv---i~vNN~~Fdp~L~lr-------~~eil~~ck~g-trIiS~~~L~~r~rs~es~~~~~~df~ 328 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATV---IFVNNVAFDPELKLR-------SKEILQKCKDG-TRIISSKPLVPRPRSQESTSRRVSDFV 328 (419)
T ss_pred cCCHHHHHHHhhcceE---EEEecccCCHHHHHh-------hHHHHhhCCCc-ceEeccccccccccchhHHHHHHHHHH
Confidence 654 4444411 000113466654332 44667778886 44556666665 45555666666
Q ss_pred H
Q psy7769 296 K 296 (355)
Q Consensus 296 ~ 296 (355)
+
T Consensus 329 ~ 329 (419)
T KOG3924|consen 329 A 329 (419)
T ss_pred h
Confidence 5
No 391
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=30.67 E-value=2.3e+02 Score=26.04 Aligned_cols=21 Identities=38% Similarity=0.308 Sum_probs=15.7
Q ss_pred HHHHHHHhhccCCcEEEEEeC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+.+.+++.++.+|+||+.+.
T Consensus 128 ~l~~~~~~~m~~~g~Iv~isS 148 (258)
T PRK07370 128 PLCKAAKPLMSEGGSIVTLTY 148 (258)
T ss_pred HHHHHHHHHHhhCCeEEEEec
Confidence 566777777777899887654
No 392
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=30.60 E-value=2.3e+02 Score=26.74 Aligned_cols=41 Identities=15% Similarity=-0.079 Sum_probs=26.4
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
...+++|+.||=. |.|+....+++.. ...+|++++.+..+.
T Consensus 162 ~~~~~~~~~vlV~--g~g~vg~~~~~la~~~g~~v~~~~~~~~~~ 204 (329)
T cd08298 162 LAGLKPGQRLGLY--GFGASAHLALQIARYQGAEVFAFTRSGEHQ 204 (329)
T ss_pred hhCCCCCCEEEEE--CCcHHHHHHHHHHHHCCCeEEEEcCChHHH
Confidence 4457789888876 3455554433321 236899998888776
No 393
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=30.24 E-value=71 Score=30.07 Aligned_cols=45 Identities=20% Similarity=0.042 Sum_probs=33.6
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.-.+|+.|||-.+|+|....+...+. -..+++|+++.-+ ..+++.
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~--r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLG--RRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcC--CceEEEecCHHHHHHHHHHHH
Confidence 35689999999999997555544443 4688899998877 555555
No 394
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=30.04 E-value=88 Score=31.47 Aligned_cols=51 Identities=16% Similarity=0.033 Sum_probs=36.7
Q ss_pred HHHhhCCCCCCeEeeecccCcch-HHHHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgK-T~~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
+...+++++|+.|.=.++|-=|. +++-|.+...++|+|+|+++.++ +.+.+
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 45667899999988776654333 34445555668999999999999 55544
No 395
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=29.85 E-value=4.3e+02 Score=23.99 Aligned_cols=33 Identities=6% Similarity=-0.253 Sum_probs=20.3
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASL 200 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~ 200 (355)
|..+| ++.|.|+.+.++++.+ ...+|+++|.+.
T Consensus 10 ~k~~l-ItG~~~gIG~a~a~~l~~~G~~vv~~~~~~ 44 (253)
T PRK08993 10 GKVAV-VTGCDTGLGQGMALGLAEAGCDIVGINIVE 44 (253)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEecCcc
Confidence 33444 4556777888877654 235677777654
No 396
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=29.72 E-value=32 Score=32.89 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhccCCcEEEEEeC---C---CC------CCCCHHHHHHHHHh
Q psy7769 258 CEIEIKHALKLVKVGGSVVYSTC---S---LS------PIQNDGVVHMSLKR 297 (355)
Q Consensus 258 lQ~lL~~A~~~LkpGG~lVYsTC---S---l~------~~ENE~vV~~~L~~ 297 (355)
.+..|++..++|||||.|+.... | +- --=|++.|..+|++
T Consensus 178 y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~ 229 (256)
T PF01234_consen 178 YRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEE 229 (256)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHH
Confidence 34899999999999999997532 1 10 11378888888875
No 397
>PRK08278 short chain dehydrogenase; Provisional
Probab=29.59 E-value=4.6e+02 Score=24.25 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=22.0
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCch
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLL 201 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~ 201 (355)
|.++| +..|.|+...+++..+ ....|++++.+..
T Consensus 6 ~k~vl-ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (273)
T PRK08278 6 GKTLF-ITGASRGIGLAIALRAARDGANIVIAAKTAE 41 (273)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence 44555 5556788888888643 2357888887653
No 398
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=29.28 E-value=4.2e+02 Score=23.76 Aligned_cols=44 Identities=16% Similarity=-0.055 Sum_probs=28.3
Q ss_pred CCCCeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh--HHhhcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+|.+||=.+ |.|+.+..++..+ . ..+|++++.+...+ +...+.
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~ 57 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIE 57 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Confidence 3565666555 5777888777643 2 35899999887766 444444
No 399
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=29.19 E-value=1.1e+02 Score=30.04 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=28.1
Q ss_pred hCCCCCCeEeeecccCcchHH---HHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTL---VALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~---~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||=.+| |+... ++|+..+-.+|+++|.++.|+
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~ 223 (368)
T TIGR02818 181 AKVEEGDTVAVFGL--GGIGLSVIQGARMAKASRIIAIDINPAKF 223 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 35788999998854 55544 444444323799999999998
No 400
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=29.16 E-value=1.3e+02 Score=27.33 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=17.5
Q ss_pred HHHHHHHhhccCCcEEEEEeC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+.+.+.++++++|.+|+.+-
T Consensus 114 ~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 114 LLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCcccccc
Confidence 778888889999999998653
No 401
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=29.05 E-value=4e+02 Score=23.45 Aligned_cols=36 Identities=14% Similarity=-0.028 Sum_probs=24.9
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
+.+|| +..|.|+.+.+++..+ ....|++++.++.+.
T Consensus 5 ~~~il-ItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~ 42 (246)
T PRK05653 5 GKTAL-VTGASRGIGRAIALRLAADGAKVVIYDSNEEAA 42 (246)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCChhHH
Confidence 44666 4445888888887653 224689998887776
No 402
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=29.05 E-value=1.2e+02 Score=25.56 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=28.0
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEe
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIK 309 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~ 309 (355)
++++...+++++||+++-.||+ ..|+..|.. .|+.++..
T Consensus 71 e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~----aGF~v~~~ 109 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLATYSSA-------GAVRRALQQ----AGFEVEKV 109 (124)
T ss_dssp HHHHHHHHHEEEEEEEEES--B-------HHHHHHHHH----CTEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEeech-------HHHHHHHHH----cCCEEEEc
Confidence 5788899999999888755553 569999986 47666543
No 403
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.40 E-value=5.2e+02 Score=24.51 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=20.3
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGAS 199 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s 199 (355)
|..+| +..|.|+...+++..+ ...+|+.+|.+
T Consensus 12 ~k~~l-VTGas~gIG~~ia~~L~~~Ga~Vv~~~~~ 45 (306)
T PRK07792 12 GKVAV-VTGAAAGLGRAEALGLARLGATVVVNDVA 45 (306)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 44555 5556677788777643 23578888765
No 404
>PRK06197 short chain dehydrogenase; Provisional
Probab=28.35 E-value=4.6e+02 Score=24.66 Aligned_cols=37 Identities=11% Similarity=-0.056 Sum_probs=25.2
Q ss_pred CCCeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl 203 (355)
.|.+|| +..|.||.+.+++..+ . ..+|+.++.+..+.
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~ 53 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKG 53 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 344555 5666788888888643 2 25788888887665
No 405
>PLN00015 protochlorophyllide reductase
Probab=28.07 E-value=5.2e+02 Score=24.46 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=17.0
Q ss_pred cccCcchHHHHHHhc-CC--CcEEEEcCCchhh
Q psy7769 174 CAAPGGKTLVALQTL-YP--DYYCMDGASLLPV 203 (355)
Q Consensus 174 CAgPGgKT~~la~~~-~~--g~V~AvD~s~~Rl 203 (355)
+.|.+|...+++..+ .. .+|+..+.+..++
T Consensus 3 TGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~ 35 (308)
T PLN00015 3 TGASSGLGLATAKALAETGKWHVVMACRDFLKA 35 (308)
T ss_pred eCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHH
Confidence 445666666666533 22 3566666665555
No 406
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=27.89 E-value=4.1e+02 Score=28.80 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=26.5
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
|.+|| +..|.|+.+.+++..+ ...+|+++|.+...+
T Consensus 414 gkvvL-VTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~ 451 (676)
T TIGR02632 414 RRVAF-VTGGAGGIGRETARRLAAEGAHVVLADLNLEAA 451 (676)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 44555 6666788899888654 236899999998777
No 407
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=27.66 E-value=2.4e+02 Score=27.56 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=18.8
Q ss_pred HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+...++.|++||+++....+-
T Consensus 222 ~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 222 DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred HHHHHHHHHhccCCEEEEEecCC
Confidence 45778899999999999876654
No 408
>PRK08263 short chain dehydrogenase; Provisional
Probab=27.62 E-value=4.9e+02 Score=23.94 Aligned_cols=34 Identities=9% Similarity=-0.118 Sum_probs=23.1
Q ss_pred eEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh
Q psy7769 169 TVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV 203 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl 203 (355)
.||=.+ |+|+.+.+++..+ . ...|++.+.++..+
T Consensus 5 ~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~ 40 (275)
T PRK08263 5 VWFITG-ASRGFGRAWTEAALERGDRVVATARDTATL 40 (275)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 444444 5788888888654 2 35788888887766
No 409
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.56 E-value=4.4e+02 Score=23.44 Aligned_cols=54 Identities=11% Similarity=-0.039 Sum_probs=32.1
Q ss_pred CeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 168 DTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.+||= ..|+|+.+.+++..+ . ..+|++.+.++..+ +...+. . + .++.+...|..
T Consensus 6 ~~vlI-tGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~---~-~~~~~~~~D~~ 63 (251)
T PRK07231 6 KVAIV-TGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL--A---G-GRAIAVAADVS 63 (251)
T ss_pred cEEEE-ECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--c---C-CeEEEEECCCC
Confidence 34443 455778888887643 2 35799999998776 444443 1 1 23455555543
No 410
>PRK08589 short chain dehydrogenase; Validated
Probab=27.36 E-value=4.9e+02 Score=23.94 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=22.4
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
|.+|| +..|.||...+++..+ ...+|++++.+ .++
T Consensus 6 ~k~vl-ItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~ 42 (272)
T PRK08589 6 NKVAV-ITGASTGIGQASAIALAQEGAYVLAVDIA-EAV 42 (272)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCc-HHH
Confidence 44455 4555677787777643 23678888888 555
No 411
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=27.16 E-value=71 Score=30.55 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=28.8
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+-++|+|++||-==.++-.........++|.|++...+ +..-+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~ 150 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLA 150 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 346799999998766555443333346899999999999 555545
No 412
>PRK06128 oxidoreductase; Provisional
Probab=26.78 E-value=5.4e+02 Score=24.18 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.7
Q ss_pred HHHHHHHhhccCCcEEEEE
Q psy7769 260 IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYs 278 (355)
.+++.+++.++.||++|+.
T Consensus 172 ~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 172 WLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HHHHHHHHhcCcCCEEEEE
Confidence 6788888888888999885
No 413
>KOG0821|consensus
Probab=26.42 E-value=1.3e+02 Score=28.73 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=31.7
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+.-..+-|..++-||||.|-.+....- .++..++++..-+
T Consensus 46 A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFi 86 (326)
T KOG0821|consen 46 AGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFI 86 (326)
T ss_pred ccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccC
Confidence 3444678999999999999998876532 5788888887666
No 414
>PRK09072 short chain dehydrogenase; Provisional
Probab=26.22 E-value=5e+02 Score=23.59 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=23.8
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
|..|| +..|.|+.+..++..+ ....|++++.+...+
T Consensus 5 ~~~vl-ItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~ 42 (263)
T PRK09072 5 DKRVL-LTGASGGIGQALAEALAAAGARLLLVGRNAEKL 42 (263)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 33444 3455677888777643 236799999888776
No 415
>PRK06139 short chain dehydrogenase; Provisional
Probab=25.95 E-value=5.1e+02 Score=25.19 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=28.8
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+..|| +..|+||...+++..+ ...+|+.++.++.++ +.+.++
T Consensus 7 ~k~vl-ITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~ 52 (330)
T PRK06139 7 GAVVV-ITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECR 52 (330)
T ss_pred CCEEE-EcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 44555 5556788888887643 236799999988887 555554
No 416
>PRK07326 short chain dehydrogenase; Provisional
Probab=25.86 E-value=4.7e+02 Score=23.14 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=27.6
Q ss_pred CCeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh--HHhhcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+..||=.+ |.|+.+.+++..+ . ..+|++++.++.++ +.+.+.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELN 51 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHh
Confidence 45666544 5888888887643 2 35799999888776 444443
No 417
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=25.85 E-value=1.6e+02 Score=27.68 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=26.8
Q ss_pred HHHHHHHhhccCCcE-----EEEEe---C-CCCCCCCHHHHHHHHHh
Q psy7769 260 IEIKHALKLVKVGGS-----VVYST---C-SLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~-----lVYsT---C-Sl~~~ENE~vV~~~L~~ 297 (355)
++|.++.++|+|+|. |...+ | +=+.--+++....+++.
T Consensus 125 ~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~ 171 (219)
T PF11968_consen 125 EMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMES 171 (219)
T ss_pred HHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHh
Confidence 899999999999999 65543 3 22334456666777764
No 418
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=25.54 E-value=5.2e+02 Score=23.56 Aligned_cols=42 Identities=12% Similarity=-0.085 Sum_probs=24.4
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
|.++|=.+ |.|+.+.+++..+ ...+|+..+.+..++ +...++
T Consensus 10 ~k~~lItG-a~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 55 (265)
T PRK07097 10 GKIALITG-ASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYR 55 (265)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 43455444 4566677766533 236788888887766 444443
No 419
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.50 E-value=5.6e+02 Score=23.92 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.1
Q ss_pred HHHHHHHhhccCCcEEEEEeC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+.+.+++.++.+|+||+.+.
T Consensus 124 ~l~~~~~p~m~~~g~Iv~isS 144 (274)
T PRK08415 124 ELTRALLPLLNDGASVLTLSY 144 (274)
T ss_pred HHHHHHHHHhccCCcEEEEec
Confidence 567778888888899987653
No 420
>PRK07814 short chain dehydrogenase; Provisional
Probab=25.34 E-value=5.2e+02 Score=23.54 Aligned_cols=43 Identities=12% Similarity=-0.024 Sum_probs=28.4
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.|.+||=.+ |.|+.+.++++.+ ...+|+.++.+...+ +...+.
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~ 55 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIR 55 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 355666555 5777888888643 236899999887766 444443
No 421
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=25.16 E-value=3.6e+02 Score=25.35 Aligned_cols=39 Identities=18% Similarity=-0.005 Sum_probs=26.2
Q ss_pred hCCCCCCeEeeecccCcchHHHH---HHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVA---LQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~l---a~~~~~g~V~AvD~s~~Rl 203 (355)
..+.+|+.||-.++ |+....+ |+.. ...|++.+.+..+.
T Consensus 158 ~~~~~~~~vlI~g~--g~iG~~~~~~a~~~-G~~v~~~~~~~~~~ 199 (330)
T cd08245 158 AGPRPGERVAVLGI--GGLGHLAVQYARAM-GFETVAITRSPDKR 199 (330)
T ss_pred hCCCCCCEEEEECC--CHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 45778999998844 4444433 3333 25799999888887
No 422
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.05 E-value=5.6e+02 Score=23.74 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=14.1
Q ss_pred HHHHHHHhhccCCcEEEEEeC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+.+.+..+++.+|.||+.+.
T Consensus 126 ~~~~~~~~~~~~~g~Iv~iss 146 (262)
T PRK07984 126 AMAKACRSMLNPGSALLTLSY 146 (262)
T ss_pred HHHHHHHHHhcCCcEEEEEec
Confidence 345555667778898887653
No 423
>PRK08628 short chain dehydrogenase; Provisional
Probab=25.02 E-value=5.1e+02 Score=23.33 Aligned_cols=36 Identities=14% Similarity=-0.048 Sum_probs=22.3
Q ss_pred CCeEeeecccCcchHHHHHHhc-C-CCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl 203 (355)
|..||= ..|.|+.+.+++..+ . ..+|+.++.++...
T Consensus 7 ~~~ilI-tGasggiG~~la~~l~~~G~~v~~~~r~~~~~ 44 (258)
T PRK08628 7 DKVVIV-TGGASGIGAAISLRLAEEGAIPVIFGRSAPDD 44 (258)
T ss_pred CCEEEE-eCCCChHHHHHHHHHHHcCCcEEEEcCChhhH
Confidence 334443 445677888877643 2 25677787777665
No 424
>PLN02702 L-idonate 5-dehydrogenase
Probab=24.99 E-value=3.8e+02 Score=25.93 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=26.6
Q ss_pred hCCCCCCeEeeecccCcchH---HHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKT---LVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT---~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+.+|+.||=.+ .|+.+ .++|...+-..|+++|.+..+.
T Consensus 177 ~~~~~g~~vlI~g--~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~ 219 (364)
T PLN02702 177 ANIGPETNVLVMG--AGPIGLVTMLAARAFGAPRIVIVDVDDERL 219 (364)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 4567899888873 45444 3444444334589999988877
No 425
>PRK06500 short chain dehydrogenase; Provisional
Probab=24.89 E-value=5e+02 Score=23.12 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=21.4
Q ss_pred eeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 171 LDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 171 LD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
.=+..|.|+.+.++++.+ ...+|++++.+...+
T Consensus 9 vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~ 43 (249)
T PRK06500 9 ALITGGTSGIGLETARQFLAEGARVAITGRDPASL 43 (249)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHH
Confidence 334556777888877643 235788888776555
No 426
>PRK05854 short chain dehydrogenase; Provisional
Probab=24.86 E-value=4.3e+02 Score=25.19 Aligned_cols=36 Identities=11% Similarity=-0.067 Sum_probs=23.0
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
|.++| ++.|.||...+++..+ ...+|+.+..+..+.
T Consensus 14 gk~~l-ITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~ 51 (313)
T PRK05854 14 GKRAV-VTGASDGLGLGLARRLAAAGAEVILPVRNRAKG 51 (313)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 43444 5556677787777643 235788888877766
No 427
>PRK07074 short chain dehydrogenase; Provisional
Probab=24.84 E-value=5.2e+02 Score=23.29 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=21.0
Q ss_pred ecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 173 MCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 173 ~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
+..|+|+.+..++..+ ...+|++++.+...+
T Consensus 7 ItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~ 39 (257)
T PRK07074 7 VTGAAGGIGQALARRFLAAGDRVLALDIDAAAL 39 (257)
T ss_pred EECCcchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 3445677788777643 235799999887766
No 428
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=24.74 E-value=5.9e+02 Score=24.26 Aligned_cols=34 Identities=26% Similarity=0.234 Sum_probs=21.0
Q ss_pred eEeeecccCcchHHHHHHhc-CC--CcEEEEcCCchhh
Q psy7769 169 TVLDMCAAPGGKTLVALQTL-YP--DYYCMDGASLLPV 203 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~-~~--g~V~AvD~s~~Rl 203 (355)
+|| +..|++|.+.+++..+ .. .+|+.++.+..++
T Consensus 5 ~vl-ITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~ 41 (314)
T TIGR01289 5 TVI-ITGASSGLGLYAAKALAATGEWHVIMACRDFLKA 41 (314)
T ss_pred EEE-EECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 444 3445677777777643 22 4677777777666
No 429
>PRK05855 short chain dehydrogenase; Validated
Probab=24.43 E-value=5.3e+02 Score=26.34 Aligned_cols=56 Identities=14% Similarity=-0.029 Sum_probs=35.1
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+.++| +..|+||.+.+++..+ ...+|+.++.+...+ +...++ . .+ .++.++..|..
T Consensus 315 ~~~~l-v~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~--~~-~~~~~~~~Dv~ 374 (582)
T PRK05855 315 GKLVV-VTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIR--A--AG-AVAHAYRVDVS 374 (582)
T ss_pred CCEEE-EECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--h--cC-CeEEEEEcCCC
Confidence 44555 5556888898888654 235799999988776 444444 2 12 24566666654
No 430
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=24.26 E-value=1.7e+02 Score=26.28 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=28.2
Q ss_pred CCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
+.+|++||..++|+ |..+.+++...+ .+|++.+.++.+.
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~ 171 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKL 171 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHH
Confidence 37899999988775 333444555443 7899999998877
No 431
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=24.19 E-value=3.4e+02 Score=25.86 Aligned_cols=39 Identities=8% Similarity=-0.054 Sum_probs=23.9
Q ss_pred CCCCCCeEeeecccCcchH---HHHHHhcCCCcEEEEcCCchhh
Q psy7769 163 NIRPYDTVLDMCAAPGGKT---LVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT---~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++|++||-.++ |+.. .++|+..+...|++.+.+..+.
T Consensus 160 ~~~~g~~vlV~g~--g~vg~~~~~la~~~G~~~v~~~~~~~~~~ 201 (341)
T cd05281 160 GDVSGKSVLITGC--GPIGLMAIAVAKAAGASLVIASDPNPYRL 201 (341)
T ss_pred cCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHH
Confidence 3468888888543 4433 4455544322688888777776
No 432
>PRK06940 short chain dehydrogenase; Provisional
Probab=24.05 E-value=5.5e+02 Score=23.82 Aligned_cols=26 Identities=8% Similarity=-0.043 Sum_probs=18.1
Q ss_pred cchHHHHHHhcC-CCcEEEEcCCchhh
Q psy7769 178 GGKTLVALQTLY-PDYYCMDGASLLPV 203 (355)
Q Consensus 178 GgKT~~la~~~~-~g~V~AvD~s~~Rl 203 (355)
||...+++..+. ..+|+++|.+...+
T Consensus 11 ~gIG~~la~~l~~G~~Vv~~~r~~~~~ 37 (275)
T PRK06940 11 GGIGQAIARRVGAGKKVLLADYNEENL 37 (275)
T ss_pred ChHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 677888776542 35688888877665
No 433
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=23.87 E-value=2.7e+02 Score=26.71 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=26.8
Q ss_pred hhCCCCCCeEeeecccCcchHHHHH---HhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVAL---QTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la---~~~~~g~V~AvD~s~~Rl 203 (355)
...+++|++||=.+ .|+....++ ...+-..|++.+.+.++.
T Consensus 167 ~~~~~~g~~vlI~g--~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~ 210 (351)
T cd08233 167 RSGFKPGDTALVLG--AGPIGLLTILALKAAGASKIIVSEPSEARR 210 (351)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 34577899888764 355554443 333223799999888887
No 434
>PRK06914 short chain dehydrogenase; Provisional
Probab=23.78 E-value=5.7e+02 Score=23.41 Aligned_cols=31 Identities=13% Similarity=-0.055 Sum_probs=21.2
Q ss_pred ecccCcchHHHHHHhc-C-CCcEEEEcCCchhh
Q psy7769 173 MCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV 203 (355)
Q Consensus 173 ~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl 203 (355)
++.|.|+.+.+++..+ . ...|++++.+...+
T Consensus 8 ItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~ 40 (280)
T PRK06914 8 VTGASSGFGLLTTLELAKKGYLVIATMRNPEKQ 40 (280)
T ss_pred EECCCchHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 4456777788877543 2 35788888887766
No 435
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=23.62 E-value=45 Score=27.88 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=16.8
Q ss_pred HHHHHHHhhccCCcEEEE
Q psy7769 260 IEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVY 277 (355)
.+++.++.+|+|||.++.
T Consensus 25 ~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 25 RFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHhhCCCCEEEE
Confidence 789999999999999995
No 436
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=23.34 E-value=2.9e+02 Score=26.34 Aligned_cols=40 Identities=15% Similarity=-0.070 Sum_probs=27.1
Q ss_pred hhCCCCCCeEeeecccCcchHHHH---HHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVA---LQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~l---a~~~~~g~V~AvD~s~~Rl 203 (355)
.+.+++|++||=.+ +|.....+ |...+ .+|++++.+..++
T Consensus 158 ~~~~~~~~~vlV~g--~g~iG~~~~~~a~~~G-~~vi~~~~~~~~~ 200 (333)
T cd08296 158 NSGAKPGDLVAVQG--IGGLGHLAVQYAAKMG-FRTVAISRGSDKA 200 (333)
T ss_pred hcCCCCCCEEEEEC--CcHHHHHHHHHHHHCC-CeEEEEeCChHHH
Confidence 34678899988776 35555443 33332 5799999998887
No 437
>PRK07831 short chain dehydrogenase; Provisional
Probab=23.26 E-value=5.7e+02 Score=23.20 Aligned_cols=60 Identities=13% Similarity=0.028 Sum_probs=32.4
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.|.++|=.+++..|.+..+++.+ ...+|+.+|.+..++ ..+.++. . .+..++.++..|..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~Dl~ 79 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAA-E--LGLGRVEAVVCDVT 79 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-h--cCCceEEEEEccCC
Confidence 35566655543226677766543 235688888887776 4443431 0 12234555666643
No 438
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=23.03 E-value=5.4e+02 Score=22.90 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=20.6
Q ss_pred cccCcchHHHHHHhc-C-CCcEEEEcCCchhh
Q psy7769 174 CAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV 203 (355)
Q Consensus 174 CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl 203 (355)
..|.|+.+.+++..+ . ..+|++++.+....
T Consensus 7 tGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~ 38 (255)
T TIGR01963 7 TGAASGIGLAIALALAAAGANVVVNDLGEAGA 38 (255)
T ss_pred cCCcchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 346778888877643 2 25789998887666
No 439
>KOG2920|consensus
Probab=22.87 E-value=71 Score=31.06 Aligned_cols=37 Identities=8% Similarity=-0.064 Sum_probs=29.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.|.+|||++||+|-....+..... ..++..|.+..-+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence 688999999999999887765432 5788888887544
No 440
>PRK11630 hypothetical protein; Provisional
Probab=22.59 E-value=1.1e+02 Score=28.07 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=31.6
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCCCC----CCHHHHHHHHHh
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSLSPI----QNDGVVHMSLKR 297 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl~~~----ENE~vV~~~L~~ 297 (355)
+.+..|.+.|+.||.++|=|=|++-. .|++.|+++.+-
T Consensus 15 ~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~l 56 (206)
T PRK11630 15 RLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRI 56 (206)
T ss_pred HHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHHH
Confidence 45788999999999999999776543 899999998653
No 441
>PRK05717 oxidoreductase; Validated
Probab=21.39 E-value=6.1e+02 Score=22.87 Aligned_cols=36 Identities=14% Similarity=-0.127 Sum_probs=24.4
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
|.+|| +.-|.|+.+.+++..+ ...+|+.+|.++.+.
T Consensus 10 ~k~vl-ItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~ 47 (255)
T PRK05717 10 GRVAL-VTGAARGIGLGIAAWLIAEGWQVVLADLDRERG 47 (255)
T ss_pred CCEEE-EeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence 44566 4455688888888654 235788888877665
No 442
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.39 E-value=6.4e+02 Score=23.10 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=15.8
Q ss_pred HHHHHHHhhccCCcEEEEEeC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+++.+++.++.+|+||+.+.
T Consensus 127 ~~~~~~~~~m~~~G~Iv~isS 147 (260)
T PRK06603 127 ELSRSAEALMHDGGSIVTLTY 147 (260)
T ss_pred HHHHHHHhhhccCceEEEEec
Confidence 667777777888899887653
No 443
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=21.33 E-value=3e+02 Score=26.24 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=59.6
Q ss_pred CCCeEeeecccCcchHHHHHHhc----C-CCcEEEEcCCch--------------------------hh--HHhhccccc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL----Y-PDYYCMDGASLL--------------------------PV--LALNIRPYD 212 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~----~-~g~V~AvD~s~~--------------------------Rl--l~~~l~r~~ 212 (355)
|| .|+++++.-|+-+..++..+ . .-+|+++|.=.. -+ +++|+.++.
T Consensus 75 pG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred Ce-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 45 89999999999877665433 1 245888883210 01 445666321
Q ss_pred cccCcceEEEEEeccee--eecccCCCCCccCCc--cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCH
Q psy7769 213 TVLDIHALKLVKVGGSV--VYSTCSLSPIQNDGV--VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQND 288 (355)
Q Consensus 213 ~~~g~~~v~~~~~Da~~--lDaPCSgsG~t~~~~--l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE 288 (355)
...+++.++.++... -+.|- .+- ++.+- ++.+ .....|+..+..|.|||.||+=--.. +...
T Consensus 154 --l~~~~v~~vkG~F~dTLp~~p~-------~~IAll~lD~-DlYe--sT~~aLe~lyprl~~GGiIi~DDY~~-~gcr- 219 (248)
T PF05711_consen 154 --LLDDNVRFVKGWFPDTLPDAPI-------ERIALLHLDC-DLYE--STKDALEFLYPRLSPGGIIIFDDYGH-PGCR- 219 (248)
T ss_dssp --TSSTTEEEEES-HHHHCCC-TT---------EEEEEE----SHH--HHHHHHHHHGGGEEEEEEEEESSTTT-HHHH-
T ss_pred --CCcccEEEECCcchhhhccCCC-------ccEEEEEEec-cchH--HHHHHHHHHHhhcCCCeEEEEeCCCC-hHHH-
Confidence 222567887776532 11110 110 12111 1111 11167999999999999999765444 3222
Q ss_pred HHHHHHHHhh
Q psy7769 289 GVVHMSLKRI 298 (355)
Q Consensus 289 ~vV~~~L~~~ 298 (355)
..|+.|.+++
T Consensus 220 ~AvdeF~~~~ 229 (248)
T PF05711_consen 220 KAVDEFRAEH 229 (248)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 3456666654
No 444
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=21.19 E-value=6e+02 Score=22.71 Aligned_cols=30 Identities=7% Similarity=-0.160 Sum_probs=19.6
Q ss_pred cccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 174 CAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 174 CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
..|.|+.+.++++.+ ...+|+.++.+..++
T Consensus 6 tG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~ 37 (254)
T TIGR02415 6 TGGAQGIGKGIAERLAKDGFAVAVADLNEETA 37 (254)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 345677777777543 235788888776665
No 445
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=21.18 E-value=6.1e+02 Score=22.79 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=27.9
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.|.+||=.+ |.|+.+..++..+ ...+|+.++.+...+ +...++
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR 56 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 355676555 5677788777643 236799999987766 444443
No 446
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=20.92 E-value=3.1e+02 Score=26.12 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=23.4
Q ss_pred CCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 165 RPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 165 ~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+|++||-.++|+ |..+.++|...+...|++.+.++.+.
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~ 201 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRL 201 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 5788888754322 22334455554323688888777776
No 447
>PRK07904 short chain dehydrogenase; Provisional
Probab=20.91 E-value=6.5e+02 Score=22.99 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=34.9
Q ss_pred CCCeEeeecccCcchHHHHHHhc-CC--CcEEEEcCCchh-h--HHhhccccccccCcceEEEEEecc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL-YP--DYYCMDGASLLP-V--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~-~~--g~V~AvD~s~~R-l--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.+.+||=.+ |.||.+.++++.+ .. .+|++++.+.+. + +.+.++ . .+..++.++..|.
T Consensus 7 ~~~~vlItG-as~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~--~--~~~~~v~~~~~D~ 69 (253)
T PRK07904 7 NPQTILLLG-GTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMK--A--AGASSVEVIDFDA 69 (253)
T ss_pred CCcEEEEEc-CCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHH--h--cCCCceEEEEecC
Confidence 455566544 5788899988653 33 489999988775 5 444444 2 1223566666664
No 448
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.83 E-value=6e+02 Score=22.56 Aligned_cols=36 Identities=11% Similarity=-0.171 Sum_probs=24.4
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
+..||=.+ |+|+.+.+++..+ ....|++++.+..++
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~ 44 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENL 44 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 34565555 5788888887643 235788898887766
No 449
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.76 E-value=6.3e+02 Score=22.79 Aligned_cols=33 Identities=15% Similarity=-0.098 Sum_probs=21.7
Q ss_pred CCeEeeecccC-cchHHHHHHhc--CCCcEEEEcCC
Q psy7769 167 YDTVLDMCAAP-GGKTLVALQTL--YPDYYCMDGAS 199 (355)
Q Consensus 167 G~~VLD~CAgP-GgKT~~la~~~--~~g~V~AvD~s 199 (355)
|..||=.+|+. ||.+.+++..+ ....|++++.+
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 44666666653 67888877643 23578888766
No 450
>PRK06101 short chain dehydrogenase; Provisional
Probab=20.70 E-value=6.2e+02 Score=22.68 Aligned_cols=31 Identities=10% Similarity=-0.129 Sum_probs=22.9
Q ss_pred ecccCcchHHHHHHhc-C-CCcEEEEcCCchhh
Q psy7769 173 MCAAPGGKTLVALQTL-Y-PDYYCMDGASLLPV 203 (355)
Q Consensus 173 ~CAgPGgKT~~la~~~-~-~g~V~AvD~s~~Rl 203 (355)
+..|+|+.+.+++..+ . ..+|++++.++.++
T Consensus 6 ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~ 38 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQGWQVIACGRNQSVL 38 (240)
T ss_pred EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 5667888888888654 2 35788998887776
No 451
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=20.69 E-value=4.1e+02 Score=23.57 Aligned_cols=121 Identities=12% Similarity=0.019 Sum_probs=63.5
Q ss_pred EEEechhcHHHHHhh-C-CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhh-ccccccccCcce-EEE
Q psy7769 148 YYCMDGASLLPVLAL-N-IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALN-IRPYDTVLDIHA-LKL 222 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L-~-~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~-l~r~~~~~g~~~-v~~ 222 (355)
||.=|..+...+..+ + ..++.+|+=+||=+-...+.- .......++..|.+..-- .-.. .. .| +.+. ..+
T Consensus 5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~--fy--D~~~p~~~ 79 (162)
T PF10237_consen 5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFV--FY--DYNEPEEL 79 (162)
T ss_pred cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceE--EC--CCCChhhh
Confidence 565666655555444 3 345678988877432222211 122346788888886432 1111 21 10 1100 011
Q ss_pred -----EEecceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHH
Q psy7769 223 -----VKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 223 -----~~~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L 295 (355)
-..|...+|||- .+.+-.. .....+-.++|+++.|+.+| +++|+..+.+.|
T Consensus 80 ~~~l~~~~d~vv~DPPF------------l~~ec~~------k~a~ti~~L~k~~~kii~~T----g~~~~~~~~~ll 135 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPPF------------LSEECLT------KTAETIRLLLKPGGKIILCT----GEEMEELIKKLL 135 (162)
T ss_pred hhhcCCCceEEEECCCC------------CCHHHHH------HHHHHHHHHhCccceEEEec----HHHHHHHHHHHh
Confidence 134555689997 1111111 33344445568889999865 567888888877
No 452
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=20.69 E-value=1.3e+02 Score=27.11 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=31.5
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCCCC----CCHHHHHHHHHh
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSLSPI----QNDGVVHMSLKR 297 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl~~~----ENE~vV~~~L~~ 297 (355)
+.+..|.+.|+.||.++|-|=|++-. .|+.-|+++.+-
T Consensus 8 ~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~i 49 (190)
T PRK10634 8 DAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLEL 49 (190)
T ss_pred HHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHHH
Confidence 56788999999999999999776543 899999988764
No 453
>PRK07825 short chain dehydrogenase; Provisional
Probab=20.48 E-value=6.6e+02 Score=22.92 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=24.4
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl 203 (355)
|..|| +.-|+||.+.+++..+ ....|+.++.++..+
T Consensus 5 ~~~il-VtGasggiG~~la~~l~~~G~~v~~~~r~~~~~ 42 (273)
T PRK07825 5 GKVVA-ITGGARGIGLATARALAALGARVAIGDLDEALA 42 (273)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 44555 4556788888887643 235688888887766
No 454
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=20.30 E-value=1.9e+02 Score=26.92 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=31.1
Q ss_pred CCeEeeecccCcchHHHHHHhcC--------CCcEEEEcCCchhh--HHhhcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLY--------PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~--------~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.-+|++++||.|..+..++..+. .-+++-+|.|+... -++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 35999999999999998887543 25799999998877 344444
No 455
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=20.23 E-value=4.8e+02 Score=25.06 Aligned_cols=37 Identities=19% Similarity=-0.027 Sum_probs=25.2
Q ss_pred CCCCeEeeecccCcchHHHHHH---hcCCCcEEEEcCCchhh
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQ---TLYPDYYCMDGASLLPV 203 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~---~~~~g~V~AvD~s~~Rl 203 (355)
++|++||=.+ +|+....+++ ..+-.+|++++.++.+.
T Consensus 176 ~~g~~vlI~g--~g~vG~~~~~lak~~G~~~v~~~~~~~~~~ 215 (361)
T cd08231 176 GAGDTVVVQG--AGPLGLYAVAAAKLAGARRVIVIDGSPERL 215 (361)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 4898888774 4666655443 33323799999888887
No 456
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=20.10 E-value=4.4e+02 Score=25.69 Aligned_cols=37 Identities=16% Similarity=-0.066 Sum_probs=24.0
Q ss_pred CCCCCeEeeecccCcchHHHH---HHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVA---LQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~l---a~~~~~g~V~AvD~s~~Rl 203 (355)
+++|++||=.++ |+....+ |+.. ..+|++++.+..+.
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~ 220 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKAF-GLKVTVISSSSNKE 220 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHC-CCEEEEEeCCcchh
Confidence 468999988554 5655544 4433 25788888776654
Done!