RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7769
(355 letters)
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 89.4 bits (222), Expect = 5e-20
Identities = 65/240 (27%), Positives = 96/240 (40%), Gaps = 54/240 (22%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALN 207
Y D AS LP L L+ +P + VLD+CAAPGGKT + M+ + V+A++
Sbjct: 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAE-------LMENEGAI-VVAVD 189
Query: 208 IRP------YDTV--LDIHALKLVKVGGSVVYST---------------CSLSPIQNDGV 244
+ P + + L + + +V + CS GV
Sbjct: 190 VSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCS-----GTGV 244
Query: 245 VHMSLKRIWEETGCEIE---------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295
+ W T +I + ALKL+K GG +VYSTCSL+P +N+ VV L
Sbjct: 245 IRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFL 304
Query: 296 KRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
+R E+E L P LF L + PH+ G + K K +
Sbjct: 305 ER---HPDFELEPVRL-----PWGPLFEGLGSELGKTRRLYPHVHGTDG-FFIAKLRKKR 355
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 75.6 bits (186), Expect = 1e-15
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 43/179 (24%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT------------LVA-------LQTL 188
YY + +S++P +AL R + VLDM AAPGGKT +VA + L
Sbjct: 53 YYPQEASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKAL 112
Query: 189 YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHM- 247
+ M G V+ + R + L LK + ++ + CS +GV+
Sbjct: 113 ISNINRM-GVLNTIVINADGRKFGAYL----LKFDAI---LLDAPCS-----GEGVIRKD 159
Query: 248 -SLKRIWEETGCEIEIKH--------ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
S KR W E A+ +K GG +VYSTCSL +N+ V+ L++
Sbjct: 160 PSRKRNWSEEDI-KYCSLLQKELIDAAIDALKPGGVLVYSTCSLEVEENEEVIDYILRK 217
>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family.
Length = 277
Score = 53.9 bits (130), Expect = 3e-08
Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 50/184 (27%)
Query: 148 YYCM-DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLAL 206
+ D +S L +ALN + + +LDMCAAPGGKT + L + V+A+
Sbjct: 65 AVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAE-LMKNEGT--------VVAV 115
Query: 207 NIRPYDTVLDIHALKLVK-------------VGGSVVYSTCSLSPIQND----------- 242
+ LK V G L + D
Sbjct: 116 DRNK-------QRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGEFDRILLDAPCSGT 168
Query: 243 GVVHMSLKRIWEETGCEIE---------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293
GV+ W +I +K A LVK GG +VYSTCS+ P +N+ V+
Sbjct: 169 GVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAVIKY 228
Query: 294 SLKR 297
L++
Sbjct: 229 FLQK 232
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 53.5 bits (129), Expect = 7e-08
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 50/176 (28%)
Query: 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDT 213
L L LN +P TVLD+CAAPGGK ++ + L N R T
Sbjct: 238 TQALACLLLNPQPGSTVLDLCAAPGGK-----------------STFMAELMQN-RGQIT 279
Query: 214 VLDIHALKLVKV-------GGSVVYSTCS-----LSPIQND-----------GVV----- 245
+D + KL K+ G +++ + Q D GV+
Sbjct: 280 AVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPCTGTGVLGRRAE 339
Query: 246 ---HMSLKRIWEETGCEIEI-KHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ +++ E G + E+ HA L+K GG +VY+TCS+ P +N+ + L+R
Sbjct: 340 LRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 52.1 bits (126), Expect = 2e-07
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 25/98 (25%)
Query: 129 SGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL 188
G+I+ K G D +S+L AL+ + DTVLD CAAPGGKT + L
Sbjct: 218 KGNIAGTDLFKDG-----LITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELL 272
Query: 189 YPDYYCMDGASLLPVLALNIRPYDTVLDIHA--LKLVK 224
G V+A LDIH LKL++
Sbjct: 273 KN-----TGK----VVA---------LDIHEHKLKLIE 292
Score = 40.9 bits (97), Expect = 6e-04
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 261 EI-KHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
EI + + +K GG +VYSTC++ +N+ V+ L+
Sbjct: 360 EILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397
Score = 40.9 bits (97), Expect = 7e-04
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 219 ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
+ +K GG +VYSTC++ +N+ V+ L+
Sbjct: 365 VAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397
>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase
RsmB. This protein is also known as sun protein. The
reading frame was originally interpreted as two reading
frames, fmu and fmv. The recombinant protein from E.
coli was shown to methylate only C967 of small subunit
(16S) ribosomal RNA and to produce only m5C at that
position. The seed alignment is built from bacterial
sequences only. Eukaryotic homologs include Nop2, a
protein required for processing pre-rRNA, that is likely
also a rRNA methyltransferase, although the fine
specificity may differ. Cutoff scores are set to avoid
treating archaeal and eukaroytic homologs automatically
as functionally equivalent, although they may have very
similar roles [Protein synthesis, tRNA and rRNA base
modification].
Length = 426
Score = 49.5 bits (118), Expect = 1e-06
Identities = 42/180 (23%), Positives = 64/180 (35%), Gaps = 51/180 (28%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPY 211
D ++ L + +T+LD CAAPGGKT L+ A V+AL+I
Sbjct: 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILEL-------APQAQ---VVALDI--- 270
Query: 212 DTVLDIHALKLVKVGGSVVYSTCSLSPIQND-------------------------GVVH 246
H LK V + T D GV+
Sbjct: 271 ----HEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIR 326
Query: 247 MSLKRIWEETGCEI----EIKHAL-----KLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
W +I E++ + L+K GG++VY+TCS+ P +N + L+
Sbjct: 327 RHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386
>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 46.0 bits (110), Expect = 2e-05
Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 85/167 (50%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKT-----------LVAL-----------QTL- 188
D A+ L L + + VLD CAAPGGKT +VAL + L
Sbjct: 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQ 289
Query: 189 --------------YPDYYCMDGASLLPVLALNIRPYDTVL------------------- 215
P + DG +P+D +L
Sbjct: 290 RLGLKATVIVGDARDPAQWW-DG-----------QPFDRILLDAPCSATGVIRRHPDIKW 337
Query: 216 -----DIHAL------------KLVKVGGSVVYSTCSLSPIQNDGVV 245
DI AL L+K GG+++Y+TCS+ P +N+ +
Sbjct: 338 LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQI 384
Score = 31.3 bits (72), Expect = 0.72
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 261 EIKHAL-KLVKVGGSVVYSTCSLSPIQNDGVV 291
EI AL L+K GG+++Y+TCS+ P +N+ +
Sbjct: 353 EILDALWPLLKPGGTLLYATCSILPEENEQQI 384
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
Reviewed.
Length = 470
Score = 43.7 bits (104), Expect = 9e-05
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 264 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFS 323
HALK GG++VYSTC+L+ +N V LK + + E E PL LF
Sbjct: 230 HALK---PGGTLVYSTCTLNREENQAVCL-WLKETYPD-AVEFE---------PLGDLFP 275
Query: 324 FAN 326
A
Sbjct: 276 GAE 278
Score = 41.8 bits (99), Expect = 4e-04
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVH 246
HALK GG++VYSTC+L+ +N V
Sbjct: 230 HALK---PGGTLVYSTCTLNREENQAVCL 255
Score = 41.0 bits (97), Expect = 6e-04
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 144 GVFNYYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKT 181
G+F Y + +S+LPV AL + VLDM AAPG KT
Sbjct: 91 GLF--YIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKT 128
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 42.6 bits (100), Expect = 2e-04
Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 34/223 (15%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQ------TLYPDYYCMDGASLLP--V 203
+ + ++P+L + + P VLD CAAPGGKT + + + L+
Sbjct: 224 ESSQIVPLL-MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHA 282
Query: 204 LALNIRPYDTVL-DIHALKLV---KVGGSVVYSTC-SLSPIQNDGVVHMSLKRIWEETGC 258
L + + + D L +V + C SL +N V L+R+ +E
Sbjct: 283 KRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEV---LRRVNKEDFK 339
Query: 259 EIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLS 312
++ + A KL++ GG ++YSTC+++ +N VV + + + E+ D+
Sbjct: 340 KLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVV-----KRFVYEQKDAEVIDIR 394
Query: 313 QALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
L F I YG L+ P P Y K+
Sbjct: 395 DKLEE----FEVEGIWDGYGFLMLPD--ETLTPFYVSVLRKMG 431
>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
Length = 434
Score = 41.5 bits (98), Expect = 5e-04
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ L+K GG++VY+TC+L P +N+ + L R
Sbjct: 367 LESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402
Score = 41.1 bits (97), Expect = 6e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
L+K GG++VY+TC+L P +N+ + L R
Sbjct: 369 SLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402
Score = 39.9 bits (94), Expect = 0.002
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 128 PSGDISEFPSPKRGVTGVFNYYCM-DGASLLPVLALNIRPYDTVLDMCAAPGGKT 181
G I + P + G ++ + D ++ L L+ +P + +LD CAAPGGKT
Sbjct: 219 NPGSIRQLPGYEEG------WWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKT 267
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 34.6 bits (79), Expect = 0.078
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 2 KMTQSIEDIEKKDSTEE--RSRRQKKQSDEEEDDGSNRSSSDRH--LYSNQSLEASIETA 57
K + D+E++ + ++ + R+ KK ++ ED GS SD + S E
Sbjct: 120 KAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEEL 179
Query: 58 ELDKD 62
+L+KD
Sbjct: 180 DLEKD 184
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 32.2 bits (74), Expect = 0.21
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 162 LNIRPYDTVLDMCAAPGGKTLVALQ 186
L TVLD+ AAPGG + V L+
Sbjct: 18 LKPGKGKTVLDLGAAPGGFSQVLLE 42
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 30.6 bits (69), Expect = 0.74
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALK 221
I+P DTVLD+ AAPGG + VA++ V+A++++P + ++ ++
Sbjct: 30 IKPGDTVLDLGAAPGGWSQVAVEQ---------VGGKGRVIAVDLQPMKPIENVDFIR 78
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 29.9 bits (68), Expect = 1.0
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 116 LHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIR---PYDTVLD 172
I+ LQ F+ + EF +GV +D + P +AL I T +
Sbjct: 29 FEITA-LQMFNLTRANAEEFLEVYKGVVPELPAM-VDELTSGPCIALEIAGENAVKTFRE 86
Query: 173 MC 174
C
Sbjct: 87 FC 88
>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional.
Length = 596
Score = 30.8 bits (69), Expect = 1.1
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 273 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKDLSQALRPLKSLFSFANINLSY 331
G++ Y+T + + N + L + E GC+ I IKD++ L P ++ +A + +
Sbjct: 141 GAICYTTSPVHTLDN----FLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT 196
Query: 332 GHLVQPHLPSNFGPMYFCKFDKI 354
G V H S G C ++ +
Sbjct: 197 GLPVHLHSHSTSGLASICHYEAV 219
>gnl|CDD|225206 COG2324, COG2324, Predicted membrane protein [Function unknown].
Length = 281
Score = 30.6 bits (69), Expect = 1.3
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 284 PIQN------DGVVHMSL-KRIWEETGCEIEIKDLSQALRPLKSLFSFA 325
P+QN G V ++ KR+W E E+ D +Q L L F FA
Sbjct: 191 PLQNFAGWWLSGAVFATVAKRLWRGNFIEKEVADCNQPLEGLLGNFGFA 239
>gnl|CDD|221653 pfam12588, PSDC, Phophatidylserine decarboxylase. This domain
family is found in bacteria and eukaryotes, and is
approximately 140 amino acids in length. The family is
found in association with pfam02666. Phosphatidylserine
decarboxylase (PSD) is an important enzyme in the
synthesis of phosphatidylethanolamine in both
prokaryotes and eukaryotes.
Length = 141
Score = 29.5 bits (67), Expect = 1.4
Identities = 9/50 (18%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 285 IQNDGVVHMSLKRIWEE---------TGCEIEIKDLSQALRPLKSLFSFA 325
I++D ++M ++++E +G ++++D + L+ L + + A
Sbjct: 12 IESDPRLYMLFTQMFDEVPEKYQADPSGQPLQVRDYDELLQLLNHILTTA 61
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 29.5 bits (67), Expect = 2.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 164 IRPYDTVLDMCAAPGGKTLVALQTL 188
+P V+D+ AAPGG + VA + L
Sbjct: 43 FKPGMVVVDLGAAPGGWSQVAAKKL 67
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 29.2 bits (66), Expect = 2.5
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 4 TQSIEDIEKK--DSTEERSRRQKKQSDEEEDDGSNRSSSD 41
+IE++E+K + EER + S++ +DGS+ S D
Sbjct: 19 EDTIENVERKQALTEEERQASADESSEDASEDGSDDDSDD 58
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 29.1 bits (66), Expect = 4.0
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 12/32 (37%)
Query: 249 LKRIWEETGCEIEIKHALKLVKV-----GGSV 275
L R E TGCEI L K GGSV
Sbjct: 19 LNRASEATGCEI-------LGKAEFLNPGGSV 43
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.
Length = 499
Score = 29.0 bits (65), Expect = 4.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 184 ALQTLYPDYYCMDG 197
A+ + PDYYCMDG
Sbjct: 343 AVGRISPDYYCMDG 356
>gnl|CDD|223461 COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General
function prediction only].
Length = 291
Score = 28.8 bits (65), Expect = 4.8
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 108 FKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLAL----N 163
E E + +A D+ P+ TG+ + L+P+ +L
Sbjct: 124 LPPPEEIEAEPAELAEALGLEEDDLLPEHPPQVVSTGLPDL-------LVPLESLEALDA 176
Query: 164 IRPYDTVLDMCAAPGGKTLVALQT 187
+RP + L +A GG V +
Sbjct: 177 LRPDFSALTELSAGGGGVYVFARE 200
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22.
The mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded
pre-proteins into mitochondria, is very complex with at
least 19 components. These proteins include several
chaperone proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner
membrane translocase (Tim) and three "motor" proteins.
This family represents the Tom22 proteins. The N
terminal region of Tom22 has been shown to have
chaperone-like activity, and the C terminal region
faces the intermembrane face.
Length = 136
Score = 27.6 bits (62), Expect = 6.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 8 EDIEKKDSTEERSRRQKKQSDEEEDDGSNRSSSDRHLYSNQSLEASIETAELDKDRLVAP 67
E ++K + + +++ D+E+D ++ SD + N++L DR+VA
Sbjct: 10 ETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENETL----------YDRIVA- 58
Query: 68 HDTASTGLHDFIPATQ 83
L D +P T
Sbjct: 59 -------LKDIVPPTT 67
>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional.
Length = 394
Score = 28.2 bits (63), Expect = 6.7
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 255 ETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQA 314
E G +I ++ K G V+ I D +H LK G + D S
Sbjct: 199 EHGVDISVQALTKYQSGGSDVLMGAT----ITADAELHAKLKLARMRLGIGVSADDCSLV 254
Query: 315 LRPLKSL 321
LR L SL
Sbjct: 255 LRGLPSL 261
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 27.8 bits (62), Expect = 8.0
Identities = 10/59 (16%), Positives = 27/59 (45%)
Query: 4 TQSIEDIEKKDSTEERSRRQKKQSDEEEDDGSNRSSSDRHLYSNQSLEASIETAELDKD 62
Q+ D ++ ++++ + ++ EEE + +N + + + E S E E + +
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,952,986
Number of extensions: 1716382
Number of successful extensions: 1821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1816
Number of HSP's successfully gapped: 56
Length of query: 355
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 257
Effective length of database: 6,590,910
Effective search space: 1693863870
Effective search space used: 1693863870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)