RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7769
(355 letters)
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 85.0 bits (211), Expect = 4e-19
Identities = 39/170 (22%), Positives = 58/170 (34%), Gaps = 71/170 (41%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT------------LVALQTLYPDYY-- 193
Y +S++P + LN R D +LDMCAAPGGKT +VA+ +
Sbjct: 65 YMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAV-----EISKT 119
Query: 194 --------------------CMDGASLLPVLALNIRPYDTVL------------------ 215
D L N +D +L
Sbjct: 120 RTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVS 179
Query: 216 --DI------------HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
DI + L+K G +VYSTCS+ +N+ V+ L++
Sbjct: 180 EEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229
Score = 49.9 bits (120), Expect = 3e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
I + L+K G +VYSTCS+ +N+ V+ L++
Sbjct: 194 IDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 80.5 bits (199), Expect = 6e-17
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 43/179 (24%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT--LVALQTLYPDYYCMDGASLL---- 201
YY + ++ + L+ +P + VLD+ AAPGGKT L A M G LL
Sbjct: 83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAAR---------MGGKGLLLANE 133
Query: 202 ------PVLALNIRPY---DTVLDIHALKLVKVGGS-----VVYSTCSLSPIQNDGVVH- 246
L N+ + V L + G+ ++ + CS +G+
Sbjct: 134 VDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCS-----GEGMFRK 188
Query: 247 -MSLKRIWEETGCEI------EI-KHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
R W + + + A +L+ GG +VYSTC+ +P +N+GVV LK
Sbjct: 189 DREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKA 247
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 73.4 bits (181), Expect = 1e-14
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 75/168 (44%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-------- 203
D ++ + L + + +LD+CAAPGGKT L+ A ++ V
Sbjct: 232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE-------VAPEAQVVAVDIDEQRLS 284
Query: 204 --------LALNIR----------------PYDTVL---------------DI------- 217
L + +D +L DI
Sbjct: 285 RVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDR 344
Query: 218 --------------HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
+K GG++VY+TCS+ P +N + L+R
Sbjct: 345 DIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 70.4 bits (173), Expect = 1e-13
Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 67/165 (40%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-------DYY----------- 193
+ AS + + L+ +P +TV+D+ AAPGGKT + + D
Sbjct: 245 EEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFV 304
Query: 194 -----------CMDGASLLPVLALNIRPYDTVL------------------------DIH 218
D ++ D VL I+
Sbjct: 305 KRMGIKIVKPLVKDARKAPEIIGE--EVADKVLLDAPCTSSGTIGKNPELRWRLREDKIN 362
Query: 219 AL------------KLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
+ +LVK GG ++Y+TCS+ +N+ + L
Sbjct: 363 EMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV 407
Score = 44.2 bits (105), Expect = 4e-05
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ A +LVK GG ++Y+TCS+ +N+ + L
Sbjct: 372 LESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV 407
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 61.4 bits (150), Expect = 7e-11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTL 182
Y + +S+ P +AL+ +P + V DM AAPGGKT
Sbjct: 100 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTS 134
Score = 50.3 bits (121), Expect = 3e-07
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ L+++K GG +VYSTCSL P +N+ V+ +L
Sbjct: 229 LEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 264
Score = 48.7 bits (117), Expect = 1e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
L+++K GG +VYSTCSL P +N+ V+ +L
Sbjct: 231 KGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 264
Score = 33.7 bits (78), Expect = 0.064
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 192 YYCMDGASLLPVLALNIRPYDTVLD 216
Y + +S+ P +AL+ +P + V D
Sbjct: 100 IYIQEASSMYPPVALDPKPGEIVAD 124
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 61.9 bits (151), Expect = 8e-11
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT 181
Y + ++++ A +P + VLD+CAAPGGK+
Sbjct: 87 EYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKS 120
Score = 50.4 bits (121), Expect = 5e-07
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSL 321
+ A+K++K G ++YSTC+ +P +N+ ++ + E IE L+Q++ +S
Sbjct: 217 LSSAIKMLKNKGQLIYSTCTFAPEENEEIIS----WLVENYPVTIEEIPLTQSVSSGRSE 272
Query: 322 FSFA 325
+
Sbjct: 273 WGSV 276
Score = 46.9 bits (112), Expect = 5e-06
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
A+K++K G ++YSTC+ +P +N+ ++ ++
Sbjct: 219 SAIKMLKNKGQLIYSTCTFAPEENEEIISWLVEN 252
Score = 34.2 bits (79), Expect = 0.055
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 192 YYCMDGASLLPVLALNIRPYDTVLD 216
Y + ++++ A +P + VLD
Sbjct: 87 EYSQEPSAMIVGTAAAAKPGEKVLD 111
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 59.6 bits (145), Expect = 3e-10
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 119 SPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPG 178
P L F D+ E P + G D AS LP + L+ P V+D CAAPG
Sbjct: 61 MPELLVFP-AQTDLHEHPLYRAGH-----LILQDRASCLPAMLLDPPPGSHVIDACAAPG 114
Query: 179 GKTL 182
KT
Sbjct: 115 NKTS 118
Score = 46.9 bits (112), Expect = 4e-06
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
+ HAL +VYSTCSL +N+ VV +L++
Sbjct: 218 LCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQ 252
Score = 45.0 bits (107), Expect = 2e-05
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
HAL +VYSTCSL +N+ VV +L++
Sbjct: 220 HALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQ 252
Score = 30.7 bits (70), Expect = 0.61
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 192 YYCMDGASLLPVLALNIRPYDTVLD 216
D AS LP + L+ P V+D
Sbjct: 84 LILQDRASCLPAMLLDPPPGSHVID 108
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 57.0 bits (138), Expect = 3e-09
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKT 181
+Y + +S+LPV AL + V+D+ AAPG KT
Sbjct: 97 FYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKT 132
Score = 49.3 bits (118), Expect = 1e-06
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
I A ++ GG++VYSTC+L+ +N+ V +
Sbjct: 229 IDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKET 264
Score = 47.4 bits (113), Expect = 4e-06
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
A ++ GG++VYSTC+L+ +N+ V +
Sbjct: 231 SAFHALRPGGTLVYSTCTLNQEENEAVCLWLKET 264
Score = 29.3 bits (66), Expect = 2.0
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 192 YYCMDGASLLPVLAL--NIRPYDTVLD 216
+Y + +S+LPV AL + V+D
Sbjct: 97 FYIQEASSMLPVAALFADGNAPQRVMD 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 2e-08
Identities = 70/420 (16%), Positives = 113/420 (26%), Gaps = 152/420 (36%)
Query: 38 SSSDRHLY-SNQSLEASIETAELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFI----- 91
+ S R L S+ SLE + LV T A+QL+ E F
Sbjct: 3 AYSTRPLTLSHGSLEHVL---------LV------PTASF--FIASQLQ--EQFNKILPE 43
Query: 92 -TD---------------ADYMDY----YRPSPEVDFKVVPETELHI--SPYLQ------ 123
T+ ++ Y PS F V L + YL+
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 124 -AFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTL 182
A + + K + NY + P + ++ L G L
Sbjct: 104 LAAKLLQENDTTLVKTKELIK---NYITARIMAKRPFD----KKSNSALFRAVGEGNAQL 156
Query: 183 VA--------------LQTLYPDY------YCMDGASLLPVLALNI----RPYDTVLDIH 218
VA L+ LY Y A L L + + L+I
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 219 A-LKLVKVGGSVVY-STCSLS-PI-------------QNDGVVHMSLKRIWE-ETGCEIE 261
L+ Y + +S P+ + G L+ + TG
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 262 I-------------------KHALK-LVKVG--GSVVYSTCSLSP-IQNDGVVH------ 292
+ + A+ L +G Y SL P I D + +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 293 -M-SLKRIWEETGCEIE--IKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNF---GP 345
M S+ + T +++ + + L P + +N G N GP
Sbjct: 337 PMLSISNL---TQEQVQDYVNKTNSHL-PAGKQVEISLVN---G-------AKNLVVSGP 382
Score = 54.7 bits (131), Expect = 3e-08
Identities = 52/337 (15%), Positives = 97/337 (28%), Gaps = 135/337 (40%)
Query: 83 QLKGMEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGV 142
Q +GM G MD Y+ S V + H + + F DI +P +
Sbjct: 1627 QEQGM-G-------MDLYKTSKAAQ-DVWNRADNH---FKDTYGFSILDIVI-NNPVN-L 1672
Query: 143 TGVF----------NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDY 192
T F NY M ++T++D + + +
Sbjct: 1673 TIHFGGEKGKRIRENYSAMI--------------FETIVD--GKLKTEKIFKEINEHSTS 1716
Query: 193 YCMDG-ASLL-------PVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV 244
Y LL P AL T+++ A + +K G I D
Sbjct: 1717 YTFRSEKGLLSATQFTQP--AL------TLMEKAAFEDLKSKGL----------IPADAT 1758
Query: 245 V--HMSLKRIWEETGCE----------IEIKHALKLVKV-------------GGSVVYST 279
H SL G E + I+ +++V G Y
Sbjct: 1759 FAGH-SL-------G-EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 280 CSLSPIQ-----NDGVVHMSLKRIWEETG--CEI--------------EIKDLSQALRPL 318
+++P + + + ++R+ + TG EI +++ L L
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 319 KSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
+ I++ L + ++++
Sbjct: 1870 NFI-KLQKIDII-------ELQKSL------SLEEVE 1892
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-05
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 26/111 (23%)
Query: 42 RHLYSNQSLE--ASIETAELD------KDRLVAPHDTASTGLHDFIPATQLKGMEGFITD 93
HL + + E LD K R + AS + + + QLK + +I D
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL--QQLKFYKPYICD 536
Query: 94 ADYMDYYRPSPE------VDFKVVPETELHISPY---LQ-AFSFPSGDISE 134
D P E +DF E L S Y L+ A I E
Sbjct: 537 ND------PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 35.2 bits (80), Expect = 0.031
Identities = 77/494 (15%), Positives = 132/494 (26%), Gaps = 175/494 (35%)
Query: 4 TQSIEDIEKKDSTEERSRR-----QKKQS--------DEEEDD----------GSNRSSS 40
+ I+ I + R KQ + + + S
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 41 DRHLYSNQSLEASIETAELDKDRLVA---PHDTASTGLHDFIPATQ--LKGMEGF---IT 92
+Y Q + ++ V+ P+ L + PA + G+ G
Sbjct: 108 MTRMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 93 DADYMDYYRPSPEVDFKV---------VPETEL--------HISP-YLQAFSFPSGDISE 134
D Y+ ++DFK+ PET L I P + S
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 135 FPSPKRGVTGVFNY--YCMDGASLLPVL----------ALNIRPYDTVLDMCAAPGGKTL 182
S + + + Y LL VL A N+ C K L
Sbjct: 227 IHSIQAELRRLLKSKPYE---NCLL-VLLNVQNAKAWNAFNLS--------C-----KIL 269
Query: 183 V---------ALQTLYPDYYCMDGAS-------LLPVLA--LNIRPYD---TVLDIHALK 221
+ L + +D S + +L L+ RP D VL + +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 222 LVKVGGSV--------------------VYSTC--SLSP-----------IQNDGVVHMS 248
L + S+ + + L P + H+
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIP 388
Query: 249 ---LKRIWEETGCEIEIKHALKLVK---VGGSVVYSTCSL--------SPIQNDGVVHMS 294
L IW + + KL K V ST S+ ++N+ +H S
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 295 L------KRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLV---QPHLPSNFGP 345
+ + ++ D + +S + + HL P + F
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLD--------QYFYSH----IGH-HLKNIEHPERMTLF-R 494
Query: 346 MYFCKFD----KIK 355
M F F KI+
Sbjct: 495 MVFLDFRFLEQKIR 508
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.2 bits (88), Expect = 0.002
Identities = 5/58 (8%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 8 EDIEKKDSTEERSRRQ-KKQSDEEEDDG-SNRSSS-DRHLYSNQSLEASIETAELDKD 62
+ +++ D+ + ++ ++++ ++ ++ +S +++ +N+ + + + D D
Sbjct: 96 KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA-FYQQPDAD 152
Score = 34.4 bits (78), Expect = 0.027
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 2 KMTQSIEDIEK-KDSTEERSRR-QKKQSDEEEDDGSNRSSSDRHL---YSNQS--LEASI 54
++TQ E I K + EE+ +R Q+ + + + R + + L QS +E +
Sbjct: 79 RLTQEPESIRKWR---EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 55 ETAELDKDRLVAPHD 69
+ D
Sbjct: 136 INNRIADKAFYQQPD 150
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 32.8 bits (76), Expect = 0.078
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 164 IRPYDTVLDMCAAPGGKTLVALQTLYPD 191
+P TV+D+ AAPGG + + +
Sbjct: 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGK 47
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 32.9 bits (76), Expect = 0.088
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYD 212
+RP VLD AAPG + VA+Q + VL +++
Sbjct: 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGF-VLGVDLLHIF 67
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 32.2 bits (74), Expect = 0.17
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 164 IRPYDTVLDMCAAPGGKTLVALQ 186
++ +LD+ PG V L+
Sbjct: 20 LKKNKIILDIGCYPGSWCQVILE 42
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.23
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 10/31 (32%)
Query: 180 KTLVALQT---LYPDYYCMDGASLLPVLALN 207
+ L LQ LY D D A P LA+
Sbjct: 20 QALKKLQASLKLYAD----DSA---PALAIK 43
Score = 28.8 bits (63), Expect = 1.5
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 139 KRGVTGVFNYYCMDGASLLPVLALN 163
K+ + Y D A P LA+
Sbjct: 23 KK-LQASLKLYADDSA---PALAIK 43
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 31.7 bits (73), Expect = 0.24
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 164 IRPYDTVLDMCAAPGGKTLVALQ 186
+R D V+++ ++PGG T V
Sbjct: 23 VRKGDAVIEIGSSPGGWTQVLNS 45
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 31.8 bits (72), Expect = 0.27
Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 20/152 (13%)
Query: 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHA 219
+A +P + V+DM A G +L ++ + + ++
Sbjct: 119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIE---------KDPYTFKFLV--EN 167
Query: 220 LKLVKVGGSVVYSTCSLSPIQNDGV---VHMSLKRIWEETGCEIEIKHALKLVKVGGSVV 276
+ L KV + + + + M E I AL + K G +
Sbjct: 168 IHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTHEF-----IPKALSIAKDGAIIH 222
Query: 277 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308
Y + KRI +E G ++E
Sbjct: 223 YHNTVPEKLMPREPFET-FKRITKEYGYDVEK 253
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 29.3 bits (66), Expect = 0.65
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 239 IQNDGVVH---MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295
+ G+VH MS R+ ++V VG V + V +S+
Sbjct: 45 CRKQGLVHRTHMSSCRV----------DKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSM 94
Query: 296 KRIWEETGCEIEIKDLSQALRP 317
K + + TG +++ ++ P
Sbjct: 95 KVVNQGTGKDLDPNNVIIESGP 116
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 29.6 bits (66), Expect = 1.3
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYP 190
V I P D +++ G TL + P
Sbjct: 86 VAYAGISPGDFIVEAGVGSGALTLFLANIVGP 117
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 29.3 bits (65), Expect = 1.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 164 IRPYDTVLDMCAAPGGKTLVALQ 186
+ +D+ A PGG T ++
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVK 231
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 29.3 bits (65), Expect = 2.0
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPD 191
++ +RP +L++ G + L L
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGK 135
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 28.5 bits (63), Expect = 2.9
Identities = 26/156 (16%), Positives = 44/156 (28%), Gaps = 22/156 (14%)
Query: 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGS 228
V D+ A G + AL + GA V+ + + + I L K
Sbjct: 52 VVADLGAGTGVLSYGAL---------LLGAK--EVICVEVDKEAVDVLIENLGEFKGKFK 100
Query: 229 VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQND 288
V S + D V+ + + A ++ VVYS P
Sbjct: 101 VFIGDVSEFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEI----SDVVYSIHLAKPEVRR 156
Query: 289 GVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSF 324
+ ++ E G + + F F
Sbjct: 157 FI-----EKFSWEHGFVVTH--RLTTKIEIPLQFFF 185
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 28.4 bits (63), Expect = 3.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 164 IRPYDTVLDMCAAPGGKTLVALQ 186
++ V+D+ GG A
Sbjct: 72 VKLEGRVIDLGCGRGGWCYYAAA 94
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 28.2 bits (62), Expect = 3.5
Identities = 8/60 (13%), Positives = 26/60 (43%)
Query: 2 KMTQSIEDIEKKDSTEERSRRQKKQSDEEEDDGSNRSSSDRHLYSNQSLEASIETAELDK 61
++ + + ++E+ + ER++R S E+ + N++ ++ E + +
Sbjct: 106 QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQR 165
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 28.0 bits (62), Expect = 3.6
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPD 191
+ + ++ DTV+D G T + +
Sbjct: 15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGEN 47
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 27.8 bits (61), Expect = 4.9
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 115 ELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMC 174
E+ + + P + F Y + R + + +
Sbjct: 81 EMEKAQEVIESDSPWETLRSFYFYP-------RYLEL---LKNEAALGRFRRGERAVFIG 130
Query: 175 AAPGGKTLVALQTLY 189
P T + L +Y
Sbjct: 131 GGPLPLTGILLSHVY 145
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 27.3 bits (61), Expect = 5.6
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 295 LKR-IWEETGCEIEIKDL 311
+ R +WEETG + D+
Sbjct: 55 VAREVWEETGITMVPGDI 72
>2wh6_A Early antigen protein R; mitochondrion, early protein,
transmembrane, viral protein,; 1.50A {Human herpesvirus
4} PDB: 2v6q_A 2xpx_A 1q59_A
Length = 173
Score = 27.1 bits (59), Expect = 5.8
Identities = 15/77 (19%), Positives = 28/77 (36%)
Query: 41 DRHLYSNQSLEASIETAELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYY 100
D ++ N +L +E A + ++P DT H + + E F + +
Sbjct: 29 DSRVHGNGTLHPVLELAARETPLRLSPEDTVVLRYHVLLEEIIERNSETFTETWNRFITH 88
Query: 101 RPSPEVDFKVVPETELH 117
++DF V H
Sbjct: 89 TEHVDLDFNSVFLEIFH 105
>2r7r_A RNA-dependent RNA polymerase; viral protein, RNA-dependent RNA
polymerase, single subunit polymerase fold, fingers,
PALM, thumb; 2.60A {Simian rotavirus} PDB: 2r7q_A 2r7s_A
2r7t_A 2r7u_A 2r7v_A 2r7w_A* 2r7x_A* 2r7o_A
Length = 1095
Score = 27.9 bits (61), Expect = 6.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 100 YRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPK 139
Y+PS E +KV+ E I YL + P D + K
Sbjct: 940 YKPSIEELYKVISLHENEIQLYLISLGIPKIDADTYVGSK 979
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 27.3 bits (60), Expect = 7.0
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 159 VLALNIRPYDTVLDMCAAPGGKTLVA 184
A ++P + +L++ G + V
Sbjct: 36 AEAWQVKPGEKILEIGCGQGDLSAVL 61
>3ats_A Putative uncharacterized protein; hypothetical protein, putative
aminoglycoside phosphortransf transferase; 1.67A
{Mycobacterium tuberculosis} PDB: 3att_A*
Length = 357
Score = 27.3 bits (61), Expect = 7.9
Identities = 4/38 (10%), Positives = 11/38 (28%), Gaps = 5/38 (13%)
Query: 76 HDFIPATQLKGMEGFITDADYMDYY-----RPSPEVDF 108
+ L G+ + + D Y ++ +
Sbjct: 270 QELAGLATLPGLPEVMREDDVRATYQALTGVELGDLHW 307
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 26.6 bits (59), Expect = 8.2
Identities = 5/18 (27%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 295 LKR-IWEETGCEIEIKDL 311
+ R + EE G + + L
Sbjct: 58 VVREVKEELGVKAQAGQL 75
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 27.0 bits (59), Expect = 8.9
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDY 192
L ++RP V + + L + P
Sbjct: 108 FRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGV 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,426,488
Number of extensions: 323420
Number of successful extensions: 861
Number of sequences better than 10.0: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 66
Length of query: 355
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 260
Effective length of database: 4,049,298
Effective search space: 1052817480
Effective search space used: 1052817480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)